hdf5/tools/h5diff/testh5diff.sh
Pedro Vicente Nunes 6787ef71a2 [svn-r15428] http://bugzilla.hdfgroup.uiuc.edu/show_bug.cgi?id=1170
Summary: when using h5diff to compare the results of h5repack (or other tools that copy one HDF5 file to another), a new option is needed to allow h5diff to make an "absolute" comparison of the 2 files. This is the "contents" mode explained in the usage below.

If this mode is present, objects in both files must match (must be exactly the same). If this does not happen, the tool returns an error code of 1 (instead of the success code of 0)

Changes to the h5repack test script: the call to h5diff was changed to include -c (maintaining the previous -q). 

tested: windows, linux, solaris
2008-08-04 16:13:16 -05:00

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#! /bin/sh
#
# Copyright by The HDF Group.
# Copyright by the Board of Trustees of the University of Illinois.
# All rights reserved.
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the files COPYING and Copyright.html. COPYING can be found at the root
# of the source code distribution tree; Copyright.html can be found at the
# root level of an installed copy of the electronic HDF5 document set and
# is linked from the top-level documents page. It can also be found at
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
# access to either file, you may request a copy from help@hdfgroup.org.
#
# Tests for the h5diff tool
#
# Modification:
# Albert Cheng, 2005/08/17
# Added the SKIP feature.
# Albert Cheng, 2005/2/3
# Added -p option for parallel h5diff tests.
# Pedro Vicente Nunes:
# 10/25/2005: Added test #9
# 11/27/2006: Added test #10, #11
###############################################################################
## test file names
###############################################################################
INDIR=$srcdir/testfiles
SRCFILE1=h5diff_basic1.h5
SRCFILE2=h5diff_basic2.h5
SRCFILE3=h5diff_types.h5
SRCFILE4=h5diff_dtypes.h5
SRCFILE5=h5diff_attr1.h5
SRCFILE6=h5diff_attr2.h5
SRCFILE7=h5diff_dset1.h5
SRCFILE8=h5diff_dset2.h5
SRCFILE9=h5diff_hyper1.h5
SRCFILE10=h5diff_hyper2.h5
SRCFILE11=h5diff_empty.h5
FILE1="$INDIR/$SRCFILE1"
FILE2="$INDIR/$SRCFILE2"
FILE3="$INDIR/$SRCFILE3"
FILE4="$INDIR/$SRCFILE4"
FILE5="$INDIR/$SRCFILE5"
FILE6="$INDIR/$SRCFILE6"
FILE7="$INDIR/$SRCFILE7"
FILE8="$INDIR/$SRCFILE8"
FILE9="$INDIR/$SRCFILE9"
FILE10="$INDIR/$SRCFILE10"
FILE11="$INDIR/$SRCFILE11"
H5DIFF=h5diff # The tool name
H5DIFF_BIN=`pwd`/$H5DIFF # The path of the tool binary
CMP='cmp -s'
DIFF='diff -c'
nerrors=0
verbose=yes
pmode= # default to run h5diff tests
# The build (current) directory might be different than the source directory.
if test -z "$srcdir"; then
srcdir=.
fi
test -d ./testfiles || mkdir ./testfiles
# Parse option
# -p run ph5diff tests
# -h print help page
while [ $# -gt 0 ]; do
case "$1" in
-p) # run ph5diff tests
H5DIFF_BIN=`pwd`/ph5diff
pmode=yes
shift
;;
-h) # print help page
echo "$0 [-p] [-h]"
echo " -p run ph5diff tests"
echo " -h print help page"
shift
exit 0
;;
*) # unknown option
echo "$0: Unknown option ($1)"
exit 1
;;
esac
done
# Print a line-line message left justified in a field of 70 characters
# beginning with the word "Testing".
#
TESTING() {
SPACES=" "
echo "Testing $* $SPACES" | cut -c1-70 | tr -d '\012'
}
# Some systems will dump some messages to stdout for various reasons.
# Remove them from the stdout result file.
# $1 is the file name of the file to be filtered.
# Cases of filter needed:
# 1. Sandia Red-Storm
# yod always prints these two lines at the beginning.
# LibLustre: NAL NID: 0004a605 (5)
# Lustre: OBD class driver Build Version: 1, info@clusterfs.com
# 2. LANL Lambda
# mpijob mirun -np always add an extra line at the end like:
# P4 procgroup file is /users/acheng/.lsbatch/host10524.l82
STDOUT_FILTER() {
result_file=$1
tmp_file=/tmp/h5test_tmp_$$
# Filter Sandia Red-Storm yod messages.
cp $result_file $tmp_file
sed -e '/^LibLustre:/d' -e '/^Lustre:/d' \
< $tmp_file > $result_file
# Filter LANL Lambda mpirun message.
cp $result_file $tmp_file
sed -e '/^P4 procgroup file is/d' \
< $tmp_file > $result_file
# cleanup
rm -f $tmp_file
}
# Some systems will dump some messages to stderr for various reasons.
# Remove them from the stderr result file.
# $1 is the file name of the file to be filtered.
# Cases of filter needed:
# 1. MPE:
# In parallel mode and if MPE library is used, it prints the following
# two message lines whether the MPE tracing is used or not.
# Writing logfile.
# Finished writing logfile.
# 2. LANL MPI:
# The LANL MPI will print some messages like the following,
# LA-MPI: *** mpirun (1.5.10)
# LA-MPI: *** 3 process(es) on 2 host(s): 2*fln21 1*fln22
# LA-MPI: *** libmpi (1.5.10)
# LA-MPI: *** Copyright 2001-2004, ACL, Los Alamos National Laboratory
# 3. h5diff debug output:
# Debug output all have prefix "h5diff debug: ".
STDERR_FILTER() {
result_file=$1
tmp_file=/tmp/h5test_tmp_$$
# Filter MPE messages
if test -n "$pmode"; then
cp $result_file $tmp_file
sed -e '/^Writing logfile./d' -e '/^Finished writing logfile./d' \
< $tmp_file > $result_file
fi
# Filter LANL MPI messages
# and LLNL srun messages
if test -n "$pmode"; then
cp $result_file $tmp_file
sed -e '/^LA-MPI:/d' -e '/^srun:/d' \
< $tmp_file > $result_file
fi
# Filter h5diff debug output
cp $result_file $tmp_file
sed -e '/^h5diff debug: /d' \
< $tmp_file > $result_file
# clean up temporary files.
rm -f $tmp_file
}
# Run a test and print PASS or *FAIL*. If a test fails then increment
# the `nerrors' global variable and (if $verbose is set) display the
# difference between the actual output and the expected output. The
# expected output is given as the first argument to this function and
# the actual output file is calculated by replacing the `.ddl' with
# `.out'. The actual output is not removed if $HDF5_NOCLEANUP has a
# non-zero value.
#
# Need eval before the RUNCMD command because some machines like
# AIX, has RUNPARALLEL in the style as
# MP_PROCS=3 MP_TASKS_PER_NODE=3 poe ./a.out
# that throws the shell script off.
#
TOOLTEST() {
expect="$srcdir/testfiles/$1"
actual="./testfiles/`basename $1 .txt`.out"
actual_err="./testfiles/`basename $1 .txt`.err"
actual_sav=${actual}-sav
actual_err_sav=${actual_err}-sav
shift
if test -n "$pmode"; then
RUNCMD=$RUNPARALLEL
else
RUNCMD=$RUNSERIAL
fi
# Run test.
# Tflops interprets "$@" as "" when no parameter is given (e.g., the
# case of missing file name). Changed it to use $@ till Tflops fixes it.
#TESTING $H5DIFF $@
(
#echo "#############################"
#echo "Expected output for '$H5DIFF $@'"
#echo "#############################"
#cd $srcdir/testfiles
if [ "`uname -s`" = "TFLOPS O/S" ]; then
eval $RUNCMD $H5DIFF_BIN $@
else
eval $RUNCMD $H5DIFF_BIN "$@"
fi
) >$actual 2>$actual_err
# save actual and actual_err in case they are needed later.
cp $actual $actual_sav
STDOUT_FILTER $actual
cp $actual_err $actual_err_sav
STDERR_FILTER $actual_err
cat $actual_err >> $actual
if [ ! -f $expect ]; then
# Create the expect file if it doesn't yet exist.
echo " CREATED"
cp $actual $expect
elif $CMP $expect $actual; then
echo " PASSED"
elif test -z "$pmode"; then
echo "*FAILED*"
echo " Expected result ($expect) differs from actual result ($actual)"
nerrors="`expr $nerrors + 1`"
test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
else
# parallel mode output are often of different ordering from serial
# output. If the sorted expected and actual files compare the same,
# it is safe to assume the actual output match the expected file.
expect_sorted=expect_sorted
actual_sorted=actual_sorted
sort $expect -o $expect_sorted
sort $actual -o $actual_sorted
if $CMP $expect_sorted $actual_sorted; then
echo " PASSED"
else
echo "*FAILED*"
nerrors="`expr $nerrors + 1`"
if test yes = "$verbose"; then
echo "====Expected result ($expect_sorted) differs from actual result ($actual_sorted)"
$DIFF $expect_sorted $actual_sorted |sed 's/^/ /'
echo "====The actual output ($actual_sav)"
sed 's/^/ /' < $actual_sav
echo "====The actual stderr ($actual_err_sav)"
sed 's/^/ /' < $actual_err_sav
echo "====End of actual stderr ($actual_err_sav)"
echo ""
fi
fi
fi
# Clean up output file
if test -z "$HDF5_NOCLEANUP"; then
rm -f $actual $actual_err $actual_sav $actual_err_sav
rm -f $actual_sorted $expect_sorted
fi
}
# Print a "SKIP" message
SKIP() {
TESTING $H5DIFF $@
echo " -SKIP-"
}
##############################################################################
# The tests
# To avoid the printing of the complete full path of the test file, that hides
# all the other parameters for long paths, the printing of the command line
# is done first in
# TESTING with the name only of the test file $TOOL, not its full path $TESTFILE
##############################################################################
# ############################################################################
# # Common usage
# ############################################################################
# 1.0
TESTING $H5DIFF -h
TOOLTEST h5diff_10.txt -h
# 1.1 normal mode
TESTING $H5DIFF $SRCFILE1 $SRCFILE2
TOOLTEST h5diff_11.txt $FILE1 $FILE2
# 1.2 normal mode with objects
TESTING $H5DIFF $SRCFILE1 $SRCFILE2 g1/dset1 g1/dset2
TOOLTEST h5diff_12.txt $FILE1 $FILE2 g1/dset1 g1/dset2
# 1.3 report mode
TESTING $H5DIFF -r $SRCFILE1 $SRCFILE2
TOOLTEST h5diff_13.txt -r $FILE1 $FILE2
# 1.4 report mode with objects
TESTING $H5DIFF -r $SRCFILE1 $SRCFILE2 g1/dset1 g1/dset2
TOOLTEST h5diff_14.txt -r $FILE1 $FILE2 g1/dset1 g1/dset2
# 1.5 with -d
TESTING $H5DIFF --report --delta=5 $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_15.txt --report --delta=5 $FILE1 $FILE2 g1/dset3 g1/dset4
# 1.6.1 with -p (int)
TESTING $H5DIFF -v -p 0.02 $SRCFILE1 $SRCFILE1 g1/dset5 g1/dset6
TOOLTEST h5diff_16_1.txt -v -p 0.02 $FILE1 $FILE1 g1/dset5 g1/dset6
# 1.6.2 with -p (unsigned long_long)
TESTING $H5DIFF --verbose --relative=0.02 $SRCFILE1 $SRCFILE1 g1/dset7 g1/dset8
TOOLTEST h5diff_16_2.txt --verbose --relative=0.02 $FILE1 $FILE1 g1/dset7 g1/dset8
# 1.6.3 with -p (double)
TESTING $H5DIFF -v -p 0.02 $SRCFILE1 $SRCFILE1 g1/dset9 g1/dset10
TOOLTEST h5diff_16_3.txt -v -p 0.02 $FILE1 $FILE1 g1/dset9 g1/dset10
# 1.7 verbose mode
TESTING $H5DIFF -v $SRCFILE1 $SRCFILE2
TOOLTEST h5diff_17.txt -v $FILE1 $FILE2
# 1.8 quiet mode
TESTING $H5DIFF -q $SRCFILE1 $SRCFILE2
TOOLTEST h5diff_18.txt -q $FILE1 $FILE2
# 1.9 contents mode
TESTING $H5DIFF -v -c $SRCFILE1 $SRCFILE11
TOOLTEST h5diff_19.txt -v -c $FILE1 $FILE11
# ##############################################################################
# # not comparable types
# ##############################################################################
# 2.0
TESTING $H5DIFF -v $SRCFILE3 $SRCFILE3 dset g1
TOOLTEST h5diff_20.txt -v $FILE3 $FILE3 dset g1
# 2.1
TESTING $H5DIFF -v $SRCFILE3 $SRCFILE3 dset l1
TOOLTEST h5diff_21.txt -v $FILE3 $FILE3 dset l1
# 2.2
TESTING $H5DIFF -v $SRCFILE3 $SRCFILE3 dset t1
TOOLTEST h5diff_22.txt -v $FILE3 $FILE3 dset t1
# ##############################################################################
# # compare groups, types, links (no differences and differences)
# ##############################################################################
# 2.3
TESTING $H5DIFF -v $SRCFILE3 $SRCFILE3 g1 g1
TOOLTEST h5diff_23.txt -v $FILE3 $FILE3 g1 g1
# 2.4
TESTING $H5DIFF -v $SRCFILE3 $SRCFILE3 t1 t1
TOOLTEST h5diff_24.txt -v $FILE3 $FILE3 t1 t1
# 2.5
TESTING $H5DIFF -v $SRCFILE3 $SRCFILE3 l1 l1
TOOLTEST h5diff_25.txt -v $FILE3 $FILE3 l1 l1
# 2.6
TESTING $H5DIFF -v $SRCFILE3 $SRCFILE3 g1 g2
TOOLTEST h5diff_26.txt -v $FILE3 $FILE3 g1 g2
# 2.7
TESTING $H5DIFF -v $SRCFILE3 $SRCFILE3 t1 t2
TOOLTEST h5diff_27.txt -v $FILE3 $FILE3 t1 t2
# 2.8
TESTING $H5DIFF -v $SRCFILE3 $SRCFILE3 l1 l2
TOOLTEST h5diff_28.txt -v $FILE3 $FILE3 l1 l2
# ##############################################################################
# # Dataset datatypes
# ##############################################################################
# 5.0
TESTING $H5DIFF -v $SRCFILE4 $SRCFILE4 dset0a dset0b
TOOLTEST h5diff_50.txt -v $FILE4 $FILE4 dset0a dset0b
# 5.1
TESTING $H5DIFF -v $SRCFILE4 $SRCFILE4 dset1a dset1b
TOOLTEST h5diff_51.txt -v $FILE4 $FILE4 dset1a dset1b
# 5.2
TESTING $H5DIFF -v $SRCFILE4 $SRCFILE4 dset2a dset2b
TOOLTEST h5diff_52.txt -v $FILE4 $FILE4 dset2a dset2b
# 5.3
TESTING $H5DIFF -v $SRCFILE4 $SRCFILE4 dset3a dset4b
TOOLTEST h5diff_53.txt -v $FILE4 $FILE4 dset3a dset4b
# 5.4
TESTING $H5DIFF -v $SRCFILE4 $SRCFILE4 dset4a dset4b
TOOLTEST h5diff_54.txt -v $FILE4 $FILE4 dset4a dset4b
# 5.5
TESTING $H5DIFF -v $SRCFILE4 $SRCFILE4 dset5a dset5b
TOOLTEST h5diff_55.txt -v $FILE4 $FILE4 dset5a dset5b
# 5.6
TESTING $H5DIFF -v $SRCFILE4 $SRCFILE4 dset6a dset6b
TOOLTEST h5diff_56.txt -v $FILE4 $FILE4 dset6a dset6b
# 5.7
TESTING $H5DIFF -v $SRCFILE4 $SRCFILE4 dset7a dset7b
TOOLTEST h5diff_57.txt -v $FILE4 $FILE4 dset7a dset7b
# 5.8 (region reference)
TESTING $H5DIFF -v $SRCFILE7 $SRCFILE8 refreg
TOOLTEST h5diff_58.txt -v $FILE7 $FILE8 refreg
# ##############################################################################
# # Error messages
# ##############################################################################
# 6.0: Check if the command line number of arguments is less than 3
TESTING $H5DIFF $SRCFILE1
TOOLTEST h5diff_600.txt $FILE1
# ##############################################################################
# # -d
# ##############################################################################
# 6.3: negative value
TESTING $H5DIFF -d -4 $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_603.txt -d -4 $FILE1 $FILE2 g1/dset3 g1/dset4
# 6.4: zero
TESTING $H5DIFF -d 0 $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_604.txt -d 0 $FILE1 $FILE2 g1/dset3 g1/dset4
# 6.5: non number
TESTING $H5DIFF -d u $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_605.txt -d u $FILE1 $FILE2 g1/dset3 g1/dset4
# 6.6: hexadecimal
TESTING $H5DIFF -d 0x1 $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_606.txt -d 0x1 $FILE1 $FILE2 g1/dset3 g1/dset4
# 6.7: string
TESTING $H5DIFF -d "1" $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_607.txt -d "1" $FILE1 $FILE2 g1/dset3 g1/dset4
# 6.8: repeated option
TESTING $H5DIFF -d 1 -d 2 $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_608.txt -d 1 -d 2 $FILE1 $FILE2 g1/dset3 g1/dset4
# 6.9: number larger than biggest difference
TESTING $H5DIFF -d 200 $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_609.txt -d 200 $FILE1 $FILE2 g1/dset3 g1/dset4
# 6.10: number smaller than smallest difference
TESTING $H5DIFF -d 1 $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_610.txt -d 1 $FILE1 $FILE2 g1/dset3 g1/dset4
# ##############################################################################
# # -p
# ##############################################################################
# 6.12: negative value
TESTING $H5DIFF -p -4 $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_612.txt -p -4 $FILE1 $FILE2 g1/dset3 g1/dset4
# 6.13: zero
TESTING $H5DIFF -p 0 $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_613.txt -p 0 $FILE1 $FILE2 g1/dset3 g1/dset4
# 6.14: non number
TESTING $H5DIFF -p u $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_614.txt -p u $FILE1 $FILE2 g1/dset3 g1/dset4
# 6.15: hexadecimal
TESTING $H5DIFF -p 0x1 $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_615.txt -p 0x1 $FILE1 $FILE2 g1/dset3 g1/dset4
# 6.16: string
TESTING $H5DIFF -p "0.21" $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_616.txt -p "0.21" $FILE1 $FILE2 g1/dset3 g1/dset4
# 6.17: repeated option
TESTING $H5DIFF -p 0.21 -p 0.22 $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_617.txt -p 0.21 -p 0.22 $FILE1 $FILE2 g1/dset3 g1/dset4
# 6.18: number larger than biggest difference
TESTING $H5DIFF -p 2 $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_618.txt -p 2 $FILE1 $FILE2 g1/dset3 g1/dset4
# 6.19: number smaller than smallest difference
TESTING $H5DIFF -p 0.005 $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_619.txt -p 0.005 $FILE1 $FILE2 g1/dset3 g1/dset4
# ##############################################################################
# # -n
# ##############################################################################
# 6.21: negative value
TESTING $H5DIFF -n -4 $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_621.txt -n -4 $FILE1 $FILE2 g1/dset3 g1/dset4
# 6.22: zero
TESTING $H5DIFF -n 0 $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_622.txt -n 0 $FILE1 $FILE2 g1/dset3 g1/dset4
# 6.23: non number
TESTING $H5DIFF -n u $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_623.txt -n u $FILE1 $FILE2 g1/dset3 g1/dset4
# 6.24: hexadecimal
TESTING $H5DIFF -n 0x1 $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_624.txt -n 0x1 $FILE1 $FILE2 g1/dset3 g1/dset4
# 6.25: string
TESTING $H5DIFF -n "2" $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_625.txt -n "2" $FILE1 $FILE2 g1/dset3 g1/dset4
# 6.26: repeated option
TESTING $H5DIFF -n 2 -n 3 $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_626.txt -n 2 -n 3 $FILE1 $FILE2 g1/dset3 g1/dset4
# 6.27: number larger than biggest difference
TESTING $H5DIFF --count=200 $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_627.txt --count=200 $FILE1 $FILE2 g1/dset3 g1/dset4
# 6.28: number smaller than smallest difference
TESTING $H5DIFF -n 1 $SRCFILE1 $SRCFILE2 g1/dset3 g1/dset4
TOOLTEST h5diff_628.txt -n 1 $FILE1 $FILE2 g1/dset3 g1/dset4
# 6.29 non valid files
TESTING $H5DIFF file1.h6 file2.h6
TOOLTEST h5diff_629.txt file1.h6 file2.h6
# ##############################################################################
# 7. attributes
# ##############################################################################
TESTING $H5DIFF -v $SRCFILE5 $SRCFILE6
TOOLTEST h5diff_70.txt -v $FILE5 $FILE6
# ##############################################################################
# 8. all dataset datatypes
# ##############################################################################
TESTING $H5DIFF -v $SRCFILE7 $SRCFILE8
TOOLTEST h5diff_80.txt -v $FILE7 $FILE8
# 9. compare a file with itself
TESTING $H5DIFF -v $SRCFILE2 $SRCFILE2
TOOLTEST h5diff_90.txt -v $FILE2 $FILE2
# 10. read by hyperslab, print indexes
TESTING $H5DIFF -v $SRCFILE9 $SRCFILE10
TOOLTEST h5diff_100.txt -v $FILE9 $FILE10
# 11. floating point comparison
TESTING $H5DIFF -v $SRCFILE1 $SRCFILE1 g1/d1 g1/d2
TOOLTEST h5diff_101.txt -v $FILE1 $FILE1 g1/d1 g1/d2
TESTING $H5DIFF -v $SRCFILE1 $SRCFILE1 g1/fp1 g1/fp2
TOOLTEST h5diff_102.txt -v $FILE1 $FILE1 g1/fp1 g1/fp2
# ##############################################################################
# # END
# ##############################################################################
if test $nerrors -eq 0 ; then
echo "All $H5DIFF tests passed."
fi
exit $nerrors