mirror of
https://github.com/HDFGroup/hdf5.git
synced 2024-12-27 08:01:04 +08:00
395c1c7db5
Description: Added new H5SL_TYPE_GENERIC skip list type, which uses void *'s as keys and a client-supplied callback for key comparison. This was added to support the upcoming "merge named datatype" feature for H5Ocopy, but may be used in other places as well. Also added testing. Also fixed a potential bug with the H5SL_TYPE_OBJ implementation, and added testing for that. Tested: jam, koala, heiwa (h5committest), durandal
331 lines
9.1 KiB
C
331 lines
9.1 KiB
C
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
|
|
* Copyright by The HDF Group. *
|
|
* Copyright by the Board of Trustees of the University of Illinois. *
|
|
* All rights reserved. *
|
|
* *
|
|
* This file is part of HDF5. The full HDF5 copyright notice, including *
|
|
* terms governing use, modification, and redistribution, is contained in *
|
|
* the files COPYING and Copyright.html. COPYING can be found at the root *
|
|
* of the source code distribution tree; Copyright.html can be found at the *
|
|
* root level of an installed copy of the electronic HDF5 document set and *
|
|
* is linked from the top-level documents page. It can also be found at *
|
|
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
|
|
* access to either file, you may request a copy from help@hdfgroup.org. *
|
|
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
|
|
|
|
#include <stdio.h>
|
|
#include <stdlib.h>
|
|
#include "h5tools_ref.h"
|
|
#include "H5private.h"
|
|
#include "H5SLprivate.h"
|
|
#include "h5tools.h"
|
|
#include "h5tools_utils.h"
|
|
#include "h5trav.h"
|
|
|
|
|
|
/*
|
|
* Table to look up a path name for an object
|
|
* reference.
|
|
*
|
|
* This table stores mappings of reference -> path
|
|
* for all objects in the file that may be the target of
|
|
* an object reference.
|
|
*
|
|
* The 'path' is an absolute path by which the object
|
|
* can be accessed. When an object has > 1 such path,
|
|
* only one will be used in the table, with no particular
|
|
* method of selecting which one.
|
|
*/
|
|
|
|
typedef struct {
|
|
haddr_t objno; /* Object ID (i.e. address) */
|
|
const char *path; /* Object path */
|
|
} ref_path_node_t;
|
|
|
|
static H5SL_t *ref_path_table = NULL; /* the "table" (implemented with a skip list) */
|
|
static hid_t thefile = (-1);
|
|
|
|
static int ref_path_table_put(const char *, haddr_t objno);
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: free_ref_path_info
|
|
*
|
|
* Purpose: Free the key for a reference path table node
|
|
*
|
|
* Return: Non-negative on success, negative on failure
|
|
*
|
|
* Programmer: Quincey Koziol
|
|
*
|
|
* Modifications:
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static herr_t
|
|
free_ref_path_info(void *item, void UNUSED *key, void UNUSED *operator_data/*in,out*/)
|
|
{
|
|
ref_path_node_t *node = (ref_path_node_t *)item;
|
|
|
|
HDfree((void *)node->path);
|
|
HDfree(node);
|
|
|
|
return(0);
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: init_ref_path_cb
|
|
*
|
|
* Purpose: Called by interator to create references for
|
|
* all objects and enter them in the table.
|
|
*
|
|
* Return: Error status.
|
|
*
|
|
* Programmer: REMcG
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static herr_t
|
|
init_ref_path_cb(const char *obj_name, const H5O_info_t *oinfo,
|
|
const char *already_seen, void UNUSED *_udata)
|
|
{
|
|
/* Check if the object is already in the path table */
|
|
if(NULL == already_seen) {
|
|
/* Insert the object into the path table */
|
|
ref_path_table_put(obj_name, oinfo->addr);
|
|
} /* end if */
|
|
|
|
return 0;
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: init_ref_path_table
|
|
*
|
|
* Purpose: Initalize the reference path table
|
|
*
|
|
* Return: Non-negative on success, negative on failure
|
|
*
|
|
* Programmer: Quincey Koziol
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static int
|
|
init_ref_path_table(void)
|
|
{
|
|
/* Sanity check */
|
|
HDassert(thefile > 0);
|
|
|
|
/* Create skip list to store reference path information */
|
|
if((ref_path_table = H5SL_create(H5SL_TYPE_HADDR, NULL))==NULL)
|
|
return (-1);
|
|
|
|
/* Iterate over objects in this file */
|
|
if(h5trav_visit(thefile, "/", TRUE, TRUE, init_ref_path_cb, NULL, NULL) < 0) {
|
|
error_msg("unable to construct reference path table\n");
|
|
h5tools_setstatus(EXIT_FAILURE);
|
|
} /* end if */
|
|
|
|
return(0);
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: term_ref_path_table
|
|
*
|
|
* Purpose: Terminate the reference path table
|
|
*
|
|
* Return: Non-negative on success, negative on failure
|
|
*
|
|
* Programmer: Quincey Koziol
|
|
*
|
|
* Modifications:
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
int
|
|
term_ref_path_table(void)
|
|
{
|
|
/* Destroy reference path table, freeing all memory */
|
|
if(ref_path_table)
|
|
H5SL_destroy(ref_path_table, free_ref_path_info, NULL);
|
|
|
|
return(0);
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: ref_path_table_lookup
|
|
*
|
|
* Purpose: Looks up a table entry given a path name.
|
|
* Used during construction of the table.
|
|
*
|
|
* Return: The table entre (pte) or NULL if not in the
|
|
* table.
|
|
*
|
|
* Programmer: REMcG
|
|
*
|
|
* Modifications:
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
haddr_t
|
|
ref_path_table_lookup(const char *thepath)
|
|
{
|
|
H5O_info_t oi;
|
|
|
|
/* Allow lookups on the root group, even though it doesn't have any link info */
|
|
if(HDstrcmp(thepath, "/")) {
|
|
H5L_info_t li;
|
|
|
|
/* Check for external link first, so we don't return the OID of an object in another file */
|
|
if(H5Lget_info(thefile, thepath, &li, H5P_DEFAULT) < 0)
|
|
return HADDR_UNDEF;
|
|
|
|
/* UD links can't be followed, so they always "dangle" like soft links. */
|
|
if(li.type >= H5L_TYPE_UD_MIN)
|
|
return HADDR_UNDEF;
|
|
} /* end if */
|
|
|
|
/* Get the object info now */
|
|
/* (returns failure for dangling soft links) */
|
|
if(H5Oget_info_by_name(thefile, thepath, &oi, H5P_DEFAULT) < 0)
|
|
return HADDR_UNDEF;
|
|
|
|
/* Return OID */
|
|
return(oi.addr);
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: ref_path_table_put
|
|
*
|
|
* Purpose: Enter the 'obj' with 'path' in the table (assumes its not
|
|
* already there)
|
|
*
|
|
* Create an object reference, pte, and store them
|
|
* in the table.
|
|
*
|
|
* NOTE: Takes ownership of the path name string passed in!
|
|
*
|
|
* Return: Non-negative on success, negative on failure
|
|
*
|
|
* Programmer: REMcG
|
|
*
|
|
* Modifications:
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static int
|
|
ref_path_table_put(const char *path, haddr_t objno)
|
|
{
|
|
ref_path_node_t *new_node;
|
|
|
|
HDassert(ref_path_table);
|
|
HDassert(path);
|
|
|
|
if((new_node = HDmalloc(sizeof(ref_path_node_t))) == NULL)
|
|
return(-1);
|
|
|
|
new_node->objno = objno;
|
|
new_node->path = HDstrdup(path);
|
|
|
|
return(H5SL_insert(ref_path_table, new_node, &(new_node->objno)));
|
|
}
|
|
|
|
/*
|
|
* counter used to disambiguate multiple instances of same object.
|
|
*/
|
|
int xid = 1;
|
|
|
|
int get_next_xid(void) {
|
|
return xid++;
|
|
}
|
|
|
|
/*
|
|
* This counter is used to create fake object ID's
|
|
* The idea is to set it to the largest possible offest, which
|
|
* minimizes the chance of collision with a real object id.
|
|
*
|
|
*/
|
|
haddr_t fake_xid = HADDR_MAX;
|
|
haddr_t
|
|
get_fake_xid (void) {
|
|
return (fake_xid--);
|
|
}
|
|
|
|
/*
|
|
* for an object that does not have an object id (e.g., soft link),
|
|
* create a table entry with a fake object id as the key.
|
|
*
|
|
* Assumes 'path' is for an object that is not in the table.
|
|
*
|
|
*/
|
|
|
|
haddr_t
|
|
ref_path_table_gen_fake(const char *path)
|
|
{
|
|
haddr_t fake_objno;
|
|
|
|
/* Generate fake ID for string */
|
|
fake_objno = get_fake_xid();
|
|
|
|
/* Create ref path table, if it hasn't already been created */
|
|
if(ref_path_table == NULL)
|
|
init_ref_path_table();
|
|
|
|
/* Insert "fake" object into table */
|
|
ref_path_table_put(path, fake_objno);
|
|
|
|
return(fake_objno);
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: lookup_ref_path
|
|
*
|
|
* Purpose: Lookup the path to the object with refernce 'ref'.
|
|
*
|
|
* Return: Return a path to the object, or NULL if not found.
|
|
*
|
|
* Programmer: REMcG
|
|
*
|
|
* Modifications:
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
const char *
|
|
lookup_ref_path(haddr_t ref)
|
|
{
|
|
ref_path_node_t *node;
|
|
|
|
/* Be safer for h5ls */
|
|
if(thefile < 0)
|
|
return(NULL);
|
|
|
|
/* Create ref path table, if it hasn't already been created */
|
|
if(ref_path_table == NULL)
|
|
init_ref_path_table();
|
|
|
|
node = H5SL_search(ref_path_table, &ref);
|
|
|
|
return(node ? node->path : NULL);
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: fill_ref_path_table
|
|
*
|
|
* Purpose: Called by interator to create references for
|
|
* all objects and enter them in the table.
|
|
*
|
|
* Return: Error status.
|
|
*
|
|
* Programmer: REMcG
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
herr_t
|
|
fill_ref_path_table(hid_t fid)
|
|
{
|
|
/* Set file ID for later queries (XXX: this should be fixed) */
|
|
thefile = fid;
|
|
|
|
/* Defer creating the ref path table until it's needed */
|
|
|
|
return 0;
|
|
}
|
|
|