mirror of
https://github.com/HDFGroup/hdf5.git
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458 lines
17 KiB
Java
458 lines
17 KiB
Java
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the COPYING file, which can be found at the root of the source code *
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* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
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* If you do not have access to either file, you may request a copy from *
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* help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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package test;
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import static org.junit.Assert.assertFalse;
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import static org.junit.Assert.assertTrue;
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import static org.junit.Assert.fail;
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import java.io.File;
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import hdf.hdf5lib.H5;
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import hdf.hdf5lib.HDF5Constants;
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import hdf.hdf5lib.exceptions.HDF5Exception;
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import hdf.hdf5lib.exceptions.HDF5LibraryException;
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import org.junit.After;
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import org.junit.Before;
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import org.junit.Rule;
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import org.junit.Test;
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import org.junit.rules.TestName;
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public class TestH5T {
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@Rule public TestName testname = new TestName();
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private static final String H5_FILE = "testT.h5";
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long H5fid = -1;
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long H5strdid = -1;
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private final void _deleteFile(String filename) {
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File file = null;
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try {
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file = new File(filename);
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}
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catch (Throwable err) {}
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if (file.exists()) {
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try {file.delete();} catch (SecurityException e) {}
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}
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}
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@Before
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public void createH5file() throws NullPointerException, HDF5Exception {
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assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0);
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System.out.print(testname.getMethodName());
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H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
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HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
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assertTrue("H5.H5Fcreate", H5fid > 0);
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H5strdid = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
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assertTrue("H5.H5Tcopy", H5strdid > 0);
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H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
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}
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@After
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public void deleteH5file() throws HDF5LibraryException {
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if (H5strdid >= 0)
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try {H5.H5Tclose(H5strdid);} catch (Exception ex) {}
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if (H5fid > 0)
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try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
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_deleteFile(H5_FILE);
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System.out.println();
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}
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@Test(expected = HDF5LibraryException.class)
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public void testH5Tequal_type_error() throws Throwable {
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H5.H5Tequal(HDF5Constants.H5T_INTEGER, H5strdid);
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}
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@Test
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public void testH5Tget_class() {
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try {
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int result = H5.H5Tget_class(H5strdid);
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assertTrue("H5.H5Tget_class", result > 0);
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String class_name = H5.H5Tget_class_name(result);
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assertTrue("H5.H5Tget_class", class_name.compareTo("H5T_STRING")==0);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tget_class: " + err);
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}
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}
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@Test
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public void testH5Tget_size() {
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long dt_size = -1;
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try {
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dt_size = H5.H5Tget_size(H5strdid);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tget_size:H5.H5Tget_size " + err);
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}
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assertTrue("testH5Tget_size", dt_size > 0);
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}
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@Test
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public void testH5Tset_size() {
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long dt_size = 5;
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try {
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H5.H5Tset_size(H5strdid, dt_size);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tset_size:H5.H5Tset_size " + err);
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}
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try {
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dt_size = H5.H5Tget_size(H5strdid);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tget_size:H5.H5Tget_size " + err);
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}
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assertTrue("testH5Tget_size", dt_size == 5);
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}
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@Test
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public void testH5Tarray_create() {
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long filetype_id = -1;
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long[] adims = { 3, 5 };
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try {
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filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims);
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assertTrue("testH5Tarray_create", filetype_id >= 0);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tarray_create.H5Tarray_create " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Tget_array_ndims() {
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long filetype_id = -1;
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int ndims = 0;
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long[] adims = { 3, 5 };
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try {
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filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tarray_create.H5Tarray_create " + err);
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}
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assertTrue("testH5Tget_array_ndims:H5Tarray_create", filetype_id >= 0);
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try {
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ndims = H5.H5Tget_array_ndims(filetype_id);
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assertTrue("testH5Tget_array_ndims", ndims == 2);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tget_array_ndims.H5Tget_array_ndims " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Tget_array_dims() {
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long filetype_id = -1;
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int ndims = 0;
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long[] adims = { 3, 5 };
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long[] rdims = new long[2];
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try {
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filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tarray_create.H5Tarray_create " + err);
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}
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assertTrue("testH5Tget_array_dims:H5Tarray_create", filetype_id >= 0);
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try {
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ndims = H5.H5Tget_array_dims(filetype_id, rdims);
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assertTrue("testH5Tget_array_dims", ndims == 2);
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assertTrue("testH5Tget_array_dims", adims[0] == rdims[0]);
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assertTrue("testH5Tget_array_dims", adims[1] == rdims[1]);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tget_array_dims.H5Tget_array_dims " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Tenum_functions() {
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long filetype_id =-1;
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String enum_type ="Enum_type";
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byte[] enum_val = new byte[1];
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String enum_name = null;
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// Create a enumerate datatype
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try {
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filetype_id = H5.H5Tcreate(HDF5Constants.H5T_ENUM, (long)1);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tenum_functions:H5Tcreate " + err);
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}
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assertTrue("testH5Tenum_functions:H5Tcreate", filetype_id >= 0);
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try {
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enum_val[0]=10;
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H5.H5Tenum_insert(filetype_id, "RED", enum_val);
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enum_val[0]=11;
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H5.H5Tenum_insert(filetype_id, "GREEN", enum_val);
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enum_val[0]=12;
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H5.H5Tenum_insert(filetype_id, "BLUE", enum_val);
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enum_val[0]=13;
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H5.H5Tenum_insert(filetype_id, "ORANGE", enum_val);
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enum_val[0]=14;
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H5.H5Tenum_insert(filetype_id, "YELLOW", enum_val);
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// Query member number and member index by member name, for enumeration type.
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assertTrue("Can't get member number", H5.H5Tget_nmembers(filetype_id) == 5);
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assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3);
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// Commit enumeration datatype and close it */
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H5.H5Tcommit(H5fid, enum_type, filetype_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
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H5.H5Tclose(filetype_id);
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// Open the dataytpe for query
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filetype_id = H5.H5Topen(H5fid, enum_type, HDF5Constants.H5P_DEFAULT);
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assertTrue("testH5Tenum_functions:H5Tcreate", filetype_id >= 0);
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// Query member number and member index by member name, for enumeration type
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assertTrue("Can't get member number", H5.H5Tget_nmembers(filetype_id) == 5);
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assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3);
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// Query member value by member name, for enumeration type
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H5.H5Tenum_valueof (filetype_id, "ORANGE", enum_val);
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assertTrue("Incorrect value for enum member", enum_val[0]==13);
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// Query member value by member index, for enumeration type
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H5.H5Tget_member_value (filetype_id, 2, enum_val);
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assertTrue("Incorrect value for enum member", enum_val[0]==12);
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// Query member name by member value, for enumeration type
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enum_val[0] = 14;
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enum_name = H5.H5Tenum_nameof(filetype_id, enum_val, 16);
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assertTrue("Incorrect name for enum member", enum_name.compareTo("YELLOW")==0);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tenum_functions:query " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Tenum_create_functions() {
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long filetype_id = -1;
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byte[] enum_val = new byte[1];
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// Create a enumerate datatype
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try {
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filetype_id = H5.H5Tenum_create(HDF5Constants.H5T_NATIVE_INT);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tenum_create_functions:H5Tcreate " + err);
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}
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assertTrue("testH5Tenum_create_functions:H5Tcreate", filetype_id >= 0);
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try {
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enum_val[0]=10;
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H5.H5Tenum_insert(filetype_id, "RED", enum_val);
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enum_val[0]=11;
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H5.H5Tenum_insert(filetype_id, "GREEN", enum_val);
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enum_val[0]=12;
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H5.H5Tenum_insert(filetype_id, "BLUE", enum_val);
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enum_val[0]=13;
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H5.H5Tenum_insert(filetype_id, "ORANGE", enum_val);
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enum_val[0]=14;
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H5.H5Tenum_insert(filetype_id, "YELLOW", enum_val);
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// Query member number and member index by member name, for enumeration type.
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assertTrue("Can't get member number", H5.H5Tget_nmembers(filetype_id) == 5);
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assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tenum_create_functions:H5Tget_nmembers " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Topaque_functions() {
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long filetype_id = -1;
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String opaque_name = null;
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// Create a opaque datatype
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try {
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filetype_id = H5.H5Tcreate(HDF5Constants.H5T_OPAQUE, (long)4);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Topaque_functions:H5Tcreate " + err);
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}
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assertTrue("testH5Topaque_functions:H5Tcreate", filetype_id >= 0);
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try {
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H5.H5Tset_tag(filetype_id, "opaque type");
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opaque_name = H5.H5Tget_tag(filetype_id);
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assertTrue("Incorrect tag for opaque type", opaque_name.compareTo("opaque type")==0);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Topaque_functions:H5Tset_get_tag " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Tvlen_create() {
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long filetype_id = -1;
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try {
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filetype_id = H5.H5Tvlen_create(HDF5Constants.H5T_C_S1);
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assertTrue("testH5Tvlen_create", filetype_id >= 0);
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// Check if datatype is VL type
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int vlclass = H5.H5Tget_class(filetype_id);
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assertTrue("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN);
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assertFalse("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tvlen_create.H5Tvlen_create " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Tis_variable_str() {
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long filetype_id = -1;
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try {
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filetype_id = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
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assertTrue("testH5Tis_variable_str.H5Tcopy: ", filetype_id >= 0);
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// Convert to variable-length string
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H5.H5Tset_size(filetype_id, HDF5Constants.H5T_VARIABLE);
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// Check if datatype is VL string
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int vlclass = H5.H5Tget_class(filetype_id);
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assertTrue("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING);
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assertFalse("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN);
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assertTrue("testH5Tis_variable_str:H5Tis_variable_str", H5.H5Tis_variable_str(filetype_id));
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// Verify that the class detects as a string
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assertTrue("testH5Tis_variable_str:H5Tdetect_class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_STRING));
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tis_variable_str " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Tcompound_functions() {
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long filetype_id =-1;
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// Create a compound datatype
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try {
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filetype_id = H5.H5Tcreate(HDF5Constants.H5T_COMPOUND, (long)16);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tcompound_functions:H5Tcreate " + err);
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}
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assertTrue("testH5Tcompound_functions:H5Tcreate", filetype_id >= 0);
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try {
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H5.H5Tinsert(filetype_id, "Lon", 0, HDF5Constants.H5T_NATIVE_DOUBLE);
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H5.H5Tinsert(filetype_id, "Lat", 8, HDF5Constants.H5T_NATIVE_DOUBLE);
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// Query member number and member index by member name, for enumeration type.
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assertTrue("Can't get member number", H5.H5Tget_nmembers(filetype_id) == 2);
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assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "Lat") == 1);
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// We started to support this function for compound type in 1.8.6 release.
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int order = H5.H5Tget_order(filetype_id);
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assertFalse("Can't get order for compound type.", order == HDF5Constants.H5T_ORDER_ERROR);
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assertTrue("Wrong order for this type.", (order == HDF5Constants.H5T_ORDER_LE) || (order == HDF5Constants.H5T_ORDER_BE));
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// Make certain that the correct classes can be detected
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assertTrue("Can't get correct class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_COMPOUND));
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assertTrue("Can't get correct class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_FLOAT));
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// Make certain that an incorrect class is not detected
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assertFalse("Can get incorrect class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_TIME));
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// Query member name by member index
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String index_name = H5.H5Tget_member_name (filetype_id, 0);
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assertTrue("Incorrect name for member index", index_name.compareTo("Lon")==0);
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// Query member offset by member no
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long index_offset = H5.H5Tget_member_offset (filetype_id, 1);
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assertTrue("Incorrect offset for member no", index_offset == 8);
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// Query member type by member index
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long index_type = H5.H5Tget_member_type (filetype_id, 0);
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assertTrue("Incorrect type for member index", H5.H5Tequal(HDF5Constants.H5T_NATIVE_DOUBLE, index_type));
|
|
if (index_type >= 0)
|
|
try {H5.H5Tclose(index_type);} catch (Exception ex) {}
|
|
|
|
}
|
|
catch (Throwable err) {
|
|
err.printStackTrace();
|
|
fail("testH5Tcompound_functions:query " + err);
|
|
}
|
|
finally {
|
|
if (filetype_id >= 0)
|
|
try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
|
|
}
|
|
}
|
|
|
|
}
|