mirror of
https://github.com/HDFGroup/hdf5.git
synced 2025-01-18 15:15:56 +08:00
5e8a177dd8
Bug fix and feature
Description:
It could not find a working h5dump to process the hdf5 files.
This could be because h5dump is not installed in $PATH or
a disfunctional one is found. (E.g. arabica:/usr/sdt/bin/h5dump
does not work.)
Setting it to ./h5dump or $PWD/h5dump does not work because
when h5dump is used, it has "cd testfiles", a different place.
Solution:
Set H5DUMP with the current absolute path (used `pwd` instead
of $PWD which is sometimes not set for whatever reason.)
Also add a feature to allow H5DUMP to be set to a different
value by hand. For example, if the h5dump just built is not
working correctly, one can do "H5DUMP=/usr/local/bin/h5dump make check"
to bypass the broken h5dump.
Platforms tested:
arabica
227 lines
6.2 KiB
Bash
227 lines
6.2 KiB
Bash
#!/bin/sh
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# Test script for the h4toh5 tests.
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# Using the h4toh5 convert to convert a pre-created hdf file to
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# an hdf5 file (output file), then compare it with a pre-created
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# corresponding hdf5 file (expected file).
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# If the same, that particular test passes.
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# If not the same, the output file and expected file are processed
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# by the h5dump tool to see if they produce the same results.
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# If the same, the test passes.
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# If not, show the difference of the two results and report the test failed.
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#
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# h5dump is default to use the one just built. It can be overridden
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# by setting $H5DUMP to a different value such as /usr/local/bin/h5dump.
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h4toh5=./h4toh5 # a relative name
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cmp='cmp -s'
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diff='diff -c'
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RM='rm -f'
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SED='sed '
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H5DUMP=${H5DUMP:-`pwd`/'h5dump'} # Default to use the h5dumper
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# in the same tools directory
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# Verify if $H5DUMP is a valid command.
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tmpfile=/tmp/testh4toh5.$$
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$H5DUMP -V > $tmpfile
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if [ ! -s $tmpfile ]; then
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echo " Could not run the '$H5DUMP' command. The test can still proceed"
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echo " but it may fail if '$H5DUMP' is needed to verify the output."
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echo " You can make sure '$H5DUMP' is among your shell PATH and run"
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echo " the test again. You may also visit http://hdf.ncsa.uiuc.edu"
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echo " or email hdfhelp@ncsa.uiuc.edu for more information."
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H5DUMP=:
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fi
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$RM $tmpfile
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# The build (current) directory might be different than the source directory.
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if test "X$srcdir" = X; then
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srcdir=.
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fi
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mkdir testfiles >/dev/null 2>&1
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SRCDIR="$srcdir/testfiles"
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OUTDIR="./testfiles"
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nerrors=0
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verbose=yes
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# Print a line-line message left justified in a field of 70 characters
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# beginning with the word "Testing".
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TESTING()
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{
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SPACES=" "
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echo "Testing $* $SPACES" |cut -c1-70 |tr -d '\012'
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}
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# Run a test and print PASS or *FAIL*. If a test fails then increment
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# the `nerrors' global variable and (if $verbose is set) display the
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# difference between the actual and the expected hdf4 files. The
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# expected hdf5 files are in testfiles/Expected directory.
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# The actual hdf5 file is not removed if $HDF5_NOCLEANUP is to a non-null
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# value.
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CONVERT()
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{
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# Run h4toh5 convert.
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TESTING $h4toh5 $@
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#
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# Set up arguments to run the conversion test.
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# The converter assumes all hdf4 files has the .hdf suffix as in the form
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# of foo.hdf. It creates the corresponding hdf5 files with the .h5 suffix
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# as in the form of foo.h5. One exception is that if exactly two file
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# names are given, it treats the first argument as an hdf4 file and creates
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# the corresponding hdf5 file with the name as the second argument, WITOUT
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# any consideration of the suffix. (For this test script, in order to
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# match the output hdf5 file with the expected hdf5 file, it expects the
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# second file of the two-files tests has the .h5 suffix too.)
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#
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# If SRCDIR != OUTDIR, need to copy the input hdf4 files from the SRCDIR
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# to the OUTDIR and transform the input file pathname because of the suffix
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# convention mentioned above. This way, the hdf5 files are always created
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# in the OUTDIR directory.
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INFILES=""
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OUTFILES=""
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MULTIRUN=""
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case "$1" in
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"-m") # multiple files conversion
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MULTIRUN="-m"
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shift
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for f in $*
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do
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if [ "$SRCDIR" != "$OUTDIR" ]
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then
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cp $SRCDIR/$f $OUTDIR/$f
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fi
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INFILES="$INFILES $f"
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OUTFILES="$OUTFILES `basename $f .hdf`.h5"
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shift
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done
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;;
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* ) # Single file conversion
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case $# in
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1) if [ "$SRCDIR" != "$OUTDIR" ]
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then
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cp $SRCDIR/$1 $OUTDIR/$1
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fi
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INFILES="$1"
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OUTFILES="`basename $1 .hdf`.h5"
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;;
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2) # hdf4 file specified
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if [ "$SRCDIR" != "$OUTDIR" ]
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then
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cp $SRCDIR/$1 $OUTDIR/$1
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fi
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INFILES="$1"
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OUTFILES="$2"
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;;
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*) # Illegal
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echo "Illegal arguments"
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exit 1
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;;
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esac
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;;
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esac
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# run the conversion and remove input files that have been copied over
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(
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cd $OUTDIR
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../$h4toh5 $INFILES $OUTFILES 2>/dev/null
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if [ "$SRCDIR" != "$OUTDIR" ]
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then
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$RM $INFILES
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fi
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)
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# Verify results
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result="passed"
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for f in $OUTFILES
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do
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if $cmp $SRCDIR/Expected/$f $OUTDIR/$f
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then
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:
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else
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# Use h5dump to dump the files and verify the output.
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outfile=`basename $f .h5`
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expect_out=$outfile.expect
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actual_out=$outfile.actual
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(cd $SRCDIR/Expected
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$H5DUMP $outfile.h5 ) > $expect_out
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(cd $OUTDIR
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$H5DUMP $outfile.h5 ) > $actual_out
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if [ "passed" = $result -a ! -s $actual_out ] ; then
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echo "*FAILED*"
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nerrors="`expr $nerrors + 1`"
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result=failed
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test yes = "$verbose" &&
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echo " H5DUMP failed to produce valid output"
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elif $cmp $expect_out $actual_out; then
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:
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else
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if test "passed" = $result; then
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echo "*FAILED*"
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nerrors="`expr $nerrors + 1`"
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result=failed
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fi
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test yes = "$verbose" &&
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echo " Actual result (*.actual) differs from expected result (*.expect)" &&
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$diff $expect_out $actual_out |sed 's/^/ /'
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fi
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fi
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# Clean up output file
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if [ X = ${HDF5_NOCLEANUP:-X} ]; then
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$RM $expect_out $actual_out
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$RM $OUTDIR/$f
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fi
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done
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if test "passed" = "$result"; then
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echo " PASSED"
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fi
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}
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##############################################################################
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##############################################################################
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### T H E T E S T S ###
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##############################################################################
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##############################################################################
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$RM $OUTDIR/*.hdf $OUTDIR/*.tmp
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#
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# The HDF5 filenames are created based upon the HDF4 filenames
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# without the extension.
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#
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# test for converting H5 groups to H4 Vgroups.
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#CONVERT vg.hdf
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#
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# The test for conversion are the same as above with the only difference
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# being that the HDF5 filenames are given explicitly.
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#
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$RM $OUTDIR/*.tmp
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CONVERT vg.hdf vg.h5
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#
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# Again, the test for conversion are the same as the first set of test.
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# Here, multiple conversion are done on HDF4 files at one time.
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#
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$RM $OUTDIR/*.hdf $OUTDIR/*.tmp
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#CONVERT -m vg.hdf
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if test $nerrors -eq 0 ; then
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echo "All h4toh5 tests passed."
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fi
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exit $nerrors
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