mirror of
https://github.com/HDFGroup/hdf5.git
synced 2025-01-30 15:32:37 +08:00
a2524671ca
* Add H5Fwait, H5Dwait, and other changes for async vol connector
* Revert temporary testing changes
* Add H5Fwait to header file
* Add H5VLreset_lib_state() routine.
* Correct VOL wrap context when retrieving library state for file open & create.
* Manage the API context's VOL connector state as part of the library state.
* Set the 'VOL connector property valid' flag when restoring the library state.
* Don't push new API context on stack when retrieving "current" one.
* Check for NULL VOL wrap context before decrementing refcount on it, when
freeing the API context state.
* Manage recount of underlying connector for VOL wrap context.
* Add H5TSmutex_acquire() and H5TSmutex_release() routines to acquire and
release the global lock on the HDF5 library.
* Update library with new functions related to library global lock
* Add asynchronous token API
* Add new lightweight FUNC_ENTER / LEAVE macros for helping to structure the
threadsafety (H5TS*) routines.
* Sync w/develop
* Initial event set code framework.
* Elaborate on the H5ES routines, starting to add API routines.
Update the "close ID" callbacks to allow asynchronous request tokens to be
passed in from an asynchronous close API call.
Refactor current asynchronous API routines (H5Fopen/H5Fclose and
H5Dread/H5Dread) to use event sets instead of directly working with request
tokens from the application.
Clean up a few other minor warnings & code style issues.
* Implement H5EScreate, H5ESget_count, and H5ESclose.
It should be possible to write a simple application that creates an event
set and uses it with H5Fopen_async, H5Dread_async, H5Dwrite_async, and
H5Fclose_async, then calls H5ESclose (which waits for all async events to
complete).
* Add source file for event set test.
* Refactor sync & async API routines to call common routine.
Move dataset API read / write routines to src/H5D.c, along with all the other
API routines.
Progress on "fake" async VOL connector, for testing.
* Modify async implementation to wrap async requests in a H5VL_object_t
struct so the VOL layer can find the connector when accessing the
request at a later point.
* Free the requests is H5ESclose. Remove comments implying that request
wait, notify, and cancel callbacks should free the request.
* Fix bug in error handling in H5Fclose.
* Fix bugs in async file routines. Rename H5VL_create_object_generic to
H5VL_create_object.
* Add explicit async version of H5Fcreate.
* Add more _async routines
* Correct typo for return value from H5Awrite changes
* Add H5EStest and H5ESwait routines
* Updated with API tracing info
* Fix NULL pointer dereference in H5ES__wait
* Add H5is_library_terminating() routine, so that VOL connectors can detect
when the library is shutting down.
* Fix typo
* Remove event from event set's linked list
* Move block of code so that vol_obj is valid
* Avoid setting properties in the DXPL when reseting the library state (and in
the test code).
* Refactor argument tracing to implement new capability for tracing arguments
of non-API routines, with the H5ARG_TRACE macro. This macro is updated
automatically with the bin/trace script that runs as part of the autogen.sh
process. Major changes were in src/H5trace.c and bin/trace, with the other
changes being cleanups to the argument lists, to improve their presentation
in the tracing output.
Also - added the "managed string" routines, which can dynamically allocate
strings, appending printf-formatted output to the string efficiently.
* Release memory for managed strings
* Fix printf() formats.
* More printf() format fixes.
* Add H5Eappend_stack routine and regression tests
* Clean up a few missed merge conflicts and update the error stacks.
* Remove unnecessary fork() operations and ten second sleep().
* Restore commented out attribute out, to better enable tracking down the previous failure
* Allow multiple H5ARG_TRACE macros within a routine to be updated
* Switch to using "new" H5ES_insert (which takes the arguments for the caller routine) for all event set operations. Renames H5ES_insert_new to H5ES_insert and removes the previous H5ES_insert.
* Merge "managed" string routines into "ref-counted" strings, and refactor code to use them.
* Add missing file.
* Add caller's name and arguments to event, for error reporting
* Refactor event set setup for "API common" internal routines
* Checkin async API routines for H5A* and H5G* modules as listed in ID-283.
Fix couple h5dump expected output files due to the changes.
* Add some of the error query routines needed for event sets.
* Refactor to make async setup / teardown and "common" routines cleaner
* (1) Add async APIs to H5L, H5F, and H5D modules
(2) Fix errors in previous checkins of async APIs in H5A and H5G modules
(3) h5dump expected output changes
* Enhance event info, for better error handling
* Change name of temporary vol_obj variable, to help reduce coding errors
* Fix oversight with vol_obj pointer
* Minor code cleanup
* Add missing \'valid\' flag for VOL wrapper context, when restoring the library\'s state
* Run source formatter
* Change H5TSmutex lock and release to include a lock count
* Update error reporting ideas
* Minor updates to improve sanity checking for retrieving / restoring library state
* Updated with feedback from h5py team members
* Refactor internal event set list and event handling, add implementation for H5ESget_err_info
* Change the VOL request subclass callbacks that switch from using "H5ES_status_t" to "H5VL_request_status_t", and also add a H5VL_request_status_t* parameter to the 'cancel' callback in the request subclass. Also more code quality cleanups to add iterator callbacks to internal event set routines.
* Update API tracing for new H5VL_request_status_t typedef
* Finish converting internal event set operations to use list iterator callbacks, instead of directly accessing the list structure
* Add H5VL_REQUEST_GET_ERR_STACK operation to request subclass, for retrieving a copy of the error stack for a failed asynchronous operation
* Remove 'canceled' event status from Java constants
* Be safer about releasing resources when inserting a newly opened/created object or file into an event set
* Remove H5EStest, add H5ES_WAIT_NONE for 0 timeout, and revise parameters to H5ESwait, to make it more "aggregate".
* Remove H5ES_STATUS_CANCELED from Java wrappers also
* (a) Add async APIs for H5O module as listed in jira issue ID-283.
(b) Remove verification of name parameter in async related routines for H55A and H5L modules
because it is checked in H5VL_setup* routine.
(c) Modify h5dump expected output due to the async changes.
* Corrections based on PR feedback.
* Further changes to make based on PR feedback.
* Fix missed merge marker, and reformatted line
* Clean up some warnings
* Correct level of indirection
* Relocate prototype (and doxygen info) for H5Aclose
* Change non-static function declarations to be static
* Ensure that H5TSpublic.h header gets installed (#129)
* Add 'wrapper' versions of async calls, to allow language wrappers and layers on top of HDF5 to pass in their application information.
* Switch H5Aexists\*_async and H5Lexists\*_async to use flag to return status, instead of return value. Make the corresponding changes through most of the v1 and v2 B-tree code. Clean up warnings in H5public.h and cmpd_dtransform.c.
* Add H5Iregister_future routine and tests.
* Correct return value for H5Lexists_async
* Add H5_DLL macro to public H5ES API routines
* Update supported -> flags parameter for introspect_query callback
* Remove my email address. Update passthrough VOL connector ID.
* Fix comment for post_open_api_common
* Remove unused non-blocking VOL connector
* Minor cleanup in async branch in preparation for merge to develop
* Update CMake and the Autotools to use the new pass-through VOL ID
* Fix for SWMR daily test failures (#160)
The H5I_register_using_existing_id() call did not initialize the future
ID callbacks, causing the library to segfault when it tried to
resolve those function pointers.
* Added selective async APIs (#150)
* Added selective async APIs
Description:
Added the following APIs:
H5Ropen_attr_async
H5Ropen_object_async
H5Ropen_region_async
H5Mcreate_async
H5Mopen_async
H5Mput_async
H5Mget_async
H5Mclose_async
H5Tcommit_async
H5Topen_async
H5Tcopy_async
H5Tclose_async
- Updated an expected output file to include a new internal function
in the error stack for the failure case.
* Updated async APIs per reviews, including removing async version of
H5Tcopy.
* Removed statements that were added by mistake in the previous commit.
* Fix compile issues in H5M and warnings elsewhere
* Reformat code
* Brings VOL_LIST changes from develop. (#163)
Co-authored-by: Houjun Tang <htang4@lbl.gov>
Co-authored-by: Neil Fortner <nfortne2@hdfgroup.org>
Co-authored-by: vchoi <vchoi@jelly.ad.hdfgroup.org>
Co-authored-by: vchoi-hdfgroup <55293060+vchoi-hdfgroup@users.noreply.github.com>
Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org>
Co-authored-by: Dana Robinson <derobins@hdfgroup.org>
Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
Co-authored-by: bmribler <39579120+bmribler@users.noreply.github.com>
310 lines
14 KiB
C
310 lines
14 KiB
C
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the COPYING file, which can be found at the root of the source code *
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* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
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* If you do not have access to either file, you may request a copy from *
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* help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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/* common definitions used by all parallel hdf5 test programs. */
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#ifndef PHDF5TEST_H
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#define PHDF5TEST_H
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#include "testpar.h"
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enum H5TEST_COLL_CHUNK_API {
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API_NONE = 0,
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API_LINK_HARD,
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API_MULTI_HARD,
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API_LINK_TRUE,
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API_LINK_FALSE,
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API_MULTI_COLL,
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API_MULTI_IND
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};
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#ifndef FALSE
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#define FALSE 0
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#endif
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#ifndef TRUE
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#define TRUE 1
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#endif
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/* Constants definitions */
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#define DIM0 600 /* Default dataset sizes. */
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#define DIM1 1200 /* Values are from a monitor pixel sizes */
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#define ROW_FACTOR 8 /* Nominal row factor for dataset size */
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#define COL_FACTOR 16 /* Nominal column factor for dataset size */
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#define RANK 2
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#define DATASETNAME1 "Data1"
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#define DATASETNAME2 "Data2"
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#define DATASETNAME3 "Data3"
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#define DATASETNAME4 "Data4"
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#define DATASETNAME5 "Data5"
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#define DATASETNAME6 "Data6"
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#define DATASETNAME7 "Data7"
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#define DATASETNAME8 "Data8"
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#define DATASETNAME9 "Data9"
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/* point selection order */
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#define IN_ORDER 1
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#define OUT_OF_ORDER 2
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/* Hyperslab layout styles */
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#define BYROW 1 /* divide into slabs of rows */
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#define BYCOL 2 /* divide into blocks of columns */
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#define ZROW 3 /* same as BYCOL except process 0 gets 0 rows */
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#define ZCOL 4 /* same as BYCOL except process 0 gets 0 columns */
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/* File_Access_type bits */
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#define FACC_DEFAULT 0x0 /* default */
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#define FACC_MPIO 0x1 /* MPIO */
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#define FACC_SPLIT 0x2 /* Split File */
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#define DXFER_COLLECTIVE_IO 0x1 /* Collective IO*/
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#define DXFER_INDEPENDENT_IO 0x2 /* Independent IO collectively */
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/*Constants for collective chunk definitions */
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#define SPACE_DIM1 24
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#define SPACE_DIM2 4
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#define BYROW_CONT 1
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#define BYROW_DISCONT 2
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#define BYROW_SELECTNONE 3
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#define BYROW_SELECTUNBALANCE 4
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#define BYROW_SELECTINCHUNK 5
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#define DIMO_NUM_CHUNK 4
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#define DIM1_NUM_CHUNK 2
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#define LINK_TRUE_NUM_CHUNK 2
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#define LINK_FALSE_NUM_CHUNK 6
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#define MULTI_TRUE_PERCENT 50
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#define LINK_TRUE_CHUNK_NAME "h5_link_chunk_true"
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#define LINK_FALSE_CHUNK_NAME "h5_link_chunk_false"
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#define LINK_HARD_CHUNK_NAME "h5_link_chunk_hard"
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#define MULTI_HARD_CHUNK_NAME "h5_multi_chunk_hard"
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#define MULTI_COLL_CHUNK_NAME "h5_multi_chunk_coll"
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#define MULTI_INDP_CHUNK_NAME "h5_multi_chunk_indp"
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#define DSET_COLLECTIVE_CHUNK_NAME "coll_chunk_name"
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/*Constants for MPI derived data type generated from span tree */
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#define MSPACE1_RANK 1 /* Rank of the first dataset in memory */
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#define MSPACE1_DIM 27000 /* Dataset size in memory */
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#define FSPACE_RANK 2 /* Dataset rank as it is stored in the file */
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#define FSPACE_DIM1 9 /* Dimension sizes of the dataset as it is stored in the file */
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#define FSPACE_DIM2 3600
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/* We will read dataset back from the file to the dataset in memory with these dataspace parameters. */
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#define MSPACE_RANK 2
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#define MSPACE_DIM1 9
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#define MSPACE_DIM2 3600
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#define FHCOUNT0 1 /* Count of the first dimension of the first hyperslab selection*/
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#define FHCOUNT1 768 /* Count of the second dimension of the first hyperslab selection*/
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#define FHSTRIDE0 4 /* Stride of the first dimension of the first hyperslab selection*/
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#define FHSTRIDE1 3 /* Stride of the second dimension of the first hyperslab selection*/
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#define FHBLOCK0 3 /* Block of the first dimension of the first hyperslab selection*/
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#define FHBLOCK1 2 /* Block of the second dimension of the first hyperslab selection*/
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#define FHSTART0 0 /* start of the first dimension of the first hyperslab selection*/
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#define FHSTART1 1 /* start of the second dimension of the first hyperslab selection*/
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#define SHCOUNT0 1 /* Count of the first dimension of the first hyperslab selection*/
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#define SHCOUNT1 1 /* Count of the second dimension of the first hyperslab selection*/
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#define SHSTRIDE0 1 /* Stride of the first dimension of the first hyperslab selection*/
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#define SHSTRIDE1 1 /* Stride of the second dimension of the first hyperslab selection*/
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#define SHBLOCK0 3 /* Block of the first dimension of the first hyperslab selection*/
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#define SHBLOCK1 768 /* Block of the second dimension of the first hyperslab selection*/
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#define SHSTART0 4 /* start of the first dimension of the first hyperslab selection*/
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#define SHSTART1 0 /* start of the second dimension of the first hyperslab selection*/
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#define MHCOUNT0 6912 /* Count of the first dimension of the first hyperslab selection*/
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#define MHSTRIDE0 1 /* Stride of the first dimension of the first hyperslab selection*/
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#define MHBLOCK0 1 /* Block of the first dimension of the first hyperslab selection*/
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#define MHSTART0 1 /* start of the first dimension of the first hyperslab selection*/
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#define RFFHCOUNT0 3 /* Count of the first dimension of the first hyperslab selection*/
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#define RFFHCOUNT1 768 /* Count of the second dimension of the first hyperslab selection*/
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#define RFFHSTRIDE0 1 /* Stride of the first dimension of the first hyperslab selection*/
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#define RFFHSTRIDE1 1 /* Stride of the second dimension of the first hyperslab selection*/
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#define RFFHBLOCK0 1 /* Block of the first dimension of the first hyperslab selection*/
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#define RFFHBLOCK1 1 /* Block of the second dimension of the first hyperslab selection*/
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#define RFFHSTART0 1 /* start of the first dimension of the first hyperslab selection*/
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#define RFFHSTART1 2 /* start of the second dimension of the first hyperslab selection*/
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#define RFSHCOUNT0 3 /* Count of the first dimension of the first hyperslab selection*/
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#define RFSHCOUNT1 1536 /* Count of the second dimension of the first hyperslab selection*/
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#define RFSHSTRIDE0 1 /* Stride of the first dimension of the first hyperslab selection*/
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#define RFSHSTRIDE1 1 /* Stride of the second dimension of the first hyperslab selection*/
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#define RFSHBLOCK0 1 /* Block of the first dimension of the first hyperslab selection*/
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#define RFSHBLOCK1 1 /* Block of the second dimension of the first hyperslab selection*/
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#define RFSHSTART0 2 /* start of the first dimension of the first hyperslab selection*/
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#define RFSHSTART1 4 /* start of the second dimension of the first hyperslab selection*/
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#define RMFHCOUNT0 3 /* Count of the first dimension of the first hyperslab selection*/
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#define RMFHCOUNT1 768 /* Count of the second dimension of the first hyperslab selection*/
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#define RMFHSTRIDE0 1 /* Stride of the first dimension of the first hyperslab selection*/
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#define RMFHSTRIDE1 1 /* Stride of the second dimension of the first hyperslab selection*/
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#define RMFHBLOCK0 1 /* Block of the first dimension of the first hyperslab selection*/
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#define RMFHBLOCK1 1 /* Block of the second dimension of the first hyperslab selection*/
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#define RMFHSTART0 0 /* start of the first dimension of the first hyperslab selection*/
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#define RMFHSTART1 0 /* start of the second dimension of the first hyperslab selection*/
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#define RMSHCOUNT0 3 /* Count of the first dimension of the first hyperslab selection*/
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#define RMSHCOUNT1 1536 /* Count of the second dimension of the first hyperslab selection*/
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#define RMSHSTRIDE0 1 /* Stride of the first dimension of the first hyperslab selection*/
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#define RMSHSTRIDE1 1 /* Stride of the second dimension of the first hyperslab selection*/
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#define RMSHBLOCK0 1 /* Block of the first dimension of the first hyperslab selection*/
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#define RMSHBLOCK1 1 /* Block of the second dimension of the first hyperslab selection*/
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#define RMSHSTART0 1 /* start of the first dimension of the first hyperslab selection*/
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#define RMSHSTART1 2 /* start of the second dimension of the first hyperslab selection*/
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#define NPOINTS \
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4 /* Number of points that will be selected \
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and overwritten */
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/* Definitions of the selection mode for the test_actual_io_function. */
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#define TEST_ACTUAL_IO_NO_COLLECTIVE 0
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#define TEST_ACTUAL_IO_RESET 1
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#define TEST_ACTUAL_IO_MULTI_CHUNK_IND 2
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#define TEST_ACTUAL_IO_MULTI_CHUNK_COL 3
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#define TEST_ACTUAL_IO_MULTI_CHUNK_MIX 4
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#define TEST_ACTUAL_IO_MULTI_CHUNK_MIX_DISAGREE 5
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#define TEST_ACTUAL_IO_DIRECT_MULTI_CHUNK_IND 6
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#define TEST_ACTUAL_IO_DIRECT_MULTI_CHUNK_COL 7
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#define TEST_ACTUAL_IO_LINK_CHUNK 8
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#define TEST_ACTUAL_IO_CONTIGUOUS 9
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/* Definitions of the selection mode for the no_collective_cause_tests function. */
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#define TEST_COLLECTIVE 0x001
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#define TEST_SET_INDEPENDENT 0x002
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#define TEST_DATATYPE_CONVERSION 0x004
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#define TEST_DATA_TRANSFORMS 0x008
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#define TEST_NOT_SIMPLE_OR_SCALAR_DATASPACES 0x010
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#define TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_COMPACT 0x020
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#define TEST_NOT_CONTIGUOUS_OR_CHUNKED_DATASET_EXTERNAL 0x040
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#define TEST_FILTERS 0x080
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/* TEST_FILTERS will take place of this after supporting mpio + filter for
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* H5Dcreate and H5Dwrite */
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#define TEST_FILTERS_READ 0x100
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/* Don't erase these lines, they are put here for debugging purposes */
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/*
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#define MSPACE1_RANK 1
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#define MSPACE1_DIM 50
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#define MSPACE2_RANK 1
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#define MSPACE2_DIM 4
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#define FSPACE_RANK 2
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#define FSPACE_DIM1 8
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#define FSPACE_DIM2 12
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#define MSPACE_RANK 2
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#define MSPACE_DIM1 8
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#define MSPACE_DIM2 9
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#define NPOINTS 4
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*/ /* end of debugging macro */
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/* type definitions */
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typedef struct H5Ptest_param_t /* holds extra test parameters */
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{
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char *name;
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int count;
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} H5Ptest_param_t;
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/* Dataset data type. Int's can be easily octo dumped. */
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typedef int DATATYPE;
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/* Shape Same Tests Definitions */
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typedef enum {
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IND_CONTIG, /* Independent IO on contigous datasets */
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COL_CONTIG, /* Collective IO on contigous datasets */
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IND_CHUNKED, /* Independent IO on chunked datasets */
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COL_CHUNKED /* Collective IO on chunked datasets */
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} ShapeSameTestMethods;
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/* Shared global variables */
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extern int dim0, dim1; /*Dataset dimensions */
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extern int chunkdim0, chunkdim1; /*Chunk dimensions */
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extern int nerrors; /*errors count */
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extern H5E_auto2_t old_func; /* previous error handler */
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extern void * old_client_data; /*previous error handler arg.*/
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extern int facc_type; /*Test file access type */
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extern int dxfer_coll_type;
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/* Test program prototypes */
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void test_plist_ed(void);
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void zero_dim_dset(void);
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void test_file_properties(void);
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void multiple_dset_write(void);
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void multiple_group_write(void);
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void multiple_group_read(void);
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void collective_group_write_independent_group_read(void);
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void collective_group_write(void);
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void independent_group_read(void);
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void test_fapl_mpio_dup(void);
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void test_split_comm_access(void);
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void test_page_buffer_access(void);
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void dataset_atomicity(void);
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void dataset_writeInd(void);
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void dataset_writeAll(void);
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void extend_writeInd(void);
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void extend_writeInd2(void);
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void extend_writeAll(void);
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void dataset_readInd(void);
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void dataset_readAll(void);
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void extend_readInd(void);
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void extend_readAll(void);
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void none_selection_chunk(void);
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void actual_io_mode_tests(void);
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void no_collective_cause_tests(void);
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void test_chunk_alloc(void);
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void test_filter_read(void);
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void compact_dataset(void);
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void null_dataset(void);
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void big_dataset(void);
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void dataset_fillvalue(void);
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void coll_chunk1(void);
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void coll_chunk2(void);
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void coll_chunk3(void);
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void coll_chunk4(void);
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void coll_chunk5(void);
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void coll_chunk6(void);
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void coll_chunk7(void);
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void coll_chunk8(void);
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void coll_chunk9(void);
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void coll_chunk10(void);
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void coll_irregular_cont_read(void);
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void coll_irregular_cont_write(void);
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void coll_irregular_simple_chunk_read(void);
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void coll_irregular_simple_chunk_write(void);
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void coll_irregular_complex_chunk_read(void);
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void coll_irregular_complex_chunk_write(void);
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void io_mode_confusion(void);
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void rr_obj_hdr_flush_confusion(void);
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void rr_obj_hdr_flush_confusion_reader(MPI_Comm comm);
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void rr_obj_hdr_flush_confusion_writer(MPI_Comm comm);
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void chunk_align_bug_1(void);
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void lower_dim_size_comp_test(void);
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void link_chunk_collective_io_test(void);
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void contig_hyperslab_dr_pio_test(ShapeSameTestMethods sstest_type);
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void checker_board_hyperslab_dr_pio_test(ShapeSameTestMethods sstest_type);
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void file_image_daisy_chain_test(void);
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#ifdef H5_HAVE_FILTER_DEFLATE
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void compress_readAll(void);
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#endif /* H5_HAVE_FILTER_DEFLATE */
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void test_dense_attr(void);
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void test_partial_no_selection_coll_md_read(void);
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void test_multi_chunk_io_addrmap_issue(void);
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void test_link_chunk_io_sort_chunk_issue(void);
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/* commonly used prototypes */
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hid_t create_faccess_plist(MPI_Comm comm, MPI_Info info, int l_facc_type);
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MPI_Offset h5_mpi_get_file_size(const char *filename, MPI_Comm comm, MPI_Info info);
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int dataset_vrfy(hsize_t start[], hsize_t count[], hsize_t stride[], hsize_t block[], DATATYPE *dataset,
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DATATYPE *original);
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void point_set(hsize_t start[], hsize_t count[], hsize_t stride[], hsize_t block[], size_t num_points,
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hsize_t coords[], int order);
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#endif /* PHDF5TEST_H */
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