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hdf5/test/tvltypes.c
Albert Cheng cb876a28a1 [svn-r3677] Purpose: 
Bug fix (sort of)
Description:
    The RCSID string in H5public.h was causing the C++ code problem as it
    was included multiple times and C++ did not like multiple definitions
    of the same static variable.
Solution:
    Since we don't really make use of the RCSID strings as we have not
    installed it in all source files, we decided to remove it.
Platforms tested:
    eirene (linux), modi4 (IRIX64-64) both serial and parallel modes.
2001-03-20 16:32:24 -05:00

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/****************************************************************************
* NCSA HDF *
* Software Development Group *
* National Center for Supercomputing Applications *
* University of Illinois at Urbana-Champaign *
* 605 E. Springfield, Champaign IL 61820 *
* *
* For conditions of distribution and use, see the accompanying *
* hdf/COPYING file. *
* *
****************************************************************************/
/* $Id$ */
/***********************************************************
*
* Test program: tvltypes
*
* Test the Variable-Length Datatype functionality
*
*************************************************************/
#include <testhdf5.h>
#include <hdf5.h>
#define FILENAME "tvltypes.h5"
/* 1-D dataset with fixed dimensions */
#define SPACE1_NAME "Space1"
#define SPACE1_RANK 1
#define SPACE1_DIM1 4
/* 2-D dataset with fixed dimensions */
#define SPACE2_NAME "Space2"
#define SPACE2_RANK 2
#define SPACE2_DIM1 10
#define SPACE2_DIM2 10
void *test_vltypes_alloc_custom(size_t size, void *info);
void test_vltypes_free_custom(void *mem, void *info);
/****************************************************************
**
** test_vltypes_alloc_custom(): Test VL datatype custom memory
** allocation routines. This routine just uses malloc to
** allocate the memory and increments the amount of memory
** allocated.
**
****************************************************************/
void *test_vltypes_alloc_custom(size_t size, void *info)
{
void *ret_value=NULL; /* Pointer to return */
int *mem_used=(int *)info; /* Get the pointer to the memory used */
size_t extra; /* Extra space needed */
/*
* This weird contortion is required on the DEC Alpha to keep the
* alignment correct - QAK
*/
extra=MAX(sizeof(void *),sizeof(size_t));
if((ret_value=HDmalloc(extra+size))!=NULL) {
*(size_t *)ret_value=size;
*mem_used+=size;
} /* end if */
ret_value=((unsigned char *)ret_value)+extra;
return(ret_value);
}
/****************************************************************
**
** test_vltypes_free_custom(): Test VL datatype custom memory
** allocation routines. This routine just uses free to
** release the memory and decrements the amount of memory
** allocated.
**
****************************************************************/
void test_vltypes_free_custom(void *_mem, void *info)
{
unsigned char *mem;
int *mem_used=(int *)info; /* Get the pointer to the memory used */
size_t extra; /* Extra space needed */
/*
* This weird contortion is required on the DEC Alpha to keep the
* alignment correct - QAK
*/
extra=MAX(sizeof(void *),sizeof(size_t));
if(_mem!=NULL) {
mem=((unsigned char *)_mem)-extra;
*mem_used-=*(size_t *)mem;
HDfree(mem);
} /* end if */
}
/****************************************************************
**
** test_vltypes_vlen_atomic(): Test basic VL datatype code.
** Tests VL datatypes of atomic datatypes
**
****************************************************************/
static void
test_vltypes_vlen_atomic(void)
{
hvl_t wdata[SPACE1_DIM1]; /* Information to write */
hvl_t rdata[SPACE1_DIM1]; /* Information read in */
hid_t fid1; /* HDF5 File IDs */
hid_t dataset; /* Dataset ID */
hid_t sid1; /* Dataspace ID */
hid_t tid1; /* Datatype ID */
hid_t xfer_pid; /* Dataset transfer property list ID */
hsize_t dims1[] = {SPACE1_DIM1};
hsize_t size; /* Number of bytes which will be used */
uintn i,j; /* counting variables */
int mem_used=0; /* Memory used during allocation */
herr_t ret; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing Basic Atomic VL Datatype Functionality\n"));
/* Allocate and initialize VL data to write */
for(i=0; i<SPACE1_DIM1; i++) {
wdata[i].p=malloc((i+1)*sizeof(unsigned int));
wdata[i].len=i+1;
for(j=0; j<(i+1); j++)
((unsigned int *)wdata[i].p)[j]=i*10+j;
} /* end for */
/* Create file */
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fcreate");
/* Create dataspace for datasets */
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
CHECK(sid1, FAIL, "H5Screate_simple");
/* Create a datatype to refer to */
tid1 = H5Tvlen_create (H5T_NATIVE_UINT);
CHECK(tid1, FAIL, "H5Tvlen_create");
/* Create a dataset */
dataset=H5Dcreate(fid1,"Dataset1",tid1,sid1,H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate");
/* Write dataset to disk */
ret=H5Dwrite(dataset,tid1,H5S_ALL,H5S_ALL,H5P_DEFAULT,wdata);
CHECK(ret, FAIL, "H5Dwrite");
/* Change to the custom memory allocation routines for reading VL data */
xfer_pid=H5Pcreate(H5P_DATASET_XFER);
CHECK(xfer_pid, FAIL, "H5Pcreate");
ret=H5Pset_vlen_mem_manager(xfer_pid,test_vltypes_alloc_custom,&mem_used,test_vltypes_free_custom,&mem_used);
CHECK(ret, FAIL, "H5Pset_vlen_mem_manager");
/* Make certain the correct amount of memory will be used */
ret=H5Dvlen_get_buf_size(dataset,tid1,sid1,&size);
CHECK(ret, FAIL, "H5Dvlen_get_buf_size");
/* 10 elements allocated = 1 + 2 + 3 + 4 elements for each array position */
VERIFY(size,((SPACE1_DIM1*(SPACE1_DIM1+1))/2)*sizeof(unsigned int),"H5Dvlen_get_buf_size");
/* Read dataset from disk */
ret=H5Dread(dataset,tid1,H5S_ALL,H5S_ALL,xfer_pid,rdata);
CHECK(ret, FAIL, "H5Dread");
/* Make certain the correct amount of memory has been used */
/* 10 elements allocated = 1 + 2 + 3 + 4 elements for each array position */
VERIFY(mem_used,((SPACE1_DIM1*(SPACE1_DIM1+1))/2)*sizeof(unsigned int),"H5Dread");
/* Compare data read in */
for(i=0; i<SPACE1_DIM1; i++) {
if(wdata[i].len!=rdata[i].len) {
num_errs++;
printf("VL data length don't match!, wdata[%d].len=%d, rdata[%d].len=%d\n",(int)i,(int)wdata[i].len,(int)i,(int)rdata[i].len);
continue;
} /* end if */
for(j=0; j<rdata[i].len; j++) {
if( ((unsigned int *)wdata[i].p)[j] != ((unsigned int *)rdata[i].p)[j] ) {
num_errs++;
printf("VL data values don't match!, wdata[%d].p[%d]=%d, rdata[%d].p[%d]=%d\n",(int)i,(int)j, (int)((unsigned int *)wdata[i].p)[j], (int)i,(int)j, (int)((unsigned int *)rdata[i].p)[j]);
continue;
} /* end if */
} /* end for */
} /* end for */
/* Reclaim the read VL data */
ret=H5Dvlen_reclaim(tid1,sid1,xfer_pid,rdata);
CHECK(ret, FAIL, "H5Dvlen_reclaim");
/* Make certain the VL memory has been freed */
VERIFY(mem_used,0,"H5Dvlen_reclaim");
/* Reclaim the write VL data */
ret=H5Dvlen_reclaim(tid1,sid1,H5P_DEFAULT,wdata);
CHECK(ret, FAIL, "H5Dvlen_reclaim");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close datatype */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
/* Close disk dataspace */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
/* Close dataset transfer property list */
ret = H5Pclose(xfer_pid);
CHECK(ret, FAIL, "H5Pclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
} /* end test_vltypes_vlen_atomic() */
/****************************************************************
**
** test_vltypes_vlen_compound(): Test basic VL datatype code.
** Tests VL datatypes of compound datatypes
**
****************************************************************/
static void
test_vltypes_vlen_compound(void)
{
typedef struct { /* Struct that the VL sequences are composed of */
int i;
float f;
} s1;
hvl_t wdata[SPACE1_DIM1]; /* Information to write */
hvl_t rdata[SPACE1_DIM1]; /* Information read in */
hid_t fid1; /* HDF5 File IDs */
hid_t dataset; /* Dataset ID */
hid_t sid1; /* Dataspace ID */
hid_t tid1, tid2; /* Datatype IDs */
hid_t xfer_pid; /* Dataset transfer property list ID */
hsize_t dims1[] = {SPACE1_DIM1};
hsize_t size; /* Number of bytes which will be used */
uintn i,j; /* counting variables */
int mem_used=0; /* Memory used during allocation */
herr_t ret; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing Basic Compound VL Datatype Functionality\n"));
/* Allocate and initialize VL data to write */
for(i=0; i<SPACE1_DIM1; i++) {
wdata[i].p=malloc((i+1)*sizeof(s1));
wdata[i].len=i+1;
for(j=0; j<(i+1); j++) {
((s1 *)wdata[i].p)[j].i=i*10+j;
((s1 *)wdata[i].p)[j].f=(i*20+j)/3.0;
} /* end for */
} /* end for */
/* Create file */
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fcreate");
/* Create dataspace for datasets */
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
CHECK(sid1, FAIL, "H5Screate_simple");
/* Create the base compound type */
tid2 = H5Tcreate(H5T_COMPOUND, sizeof(s1));
CHECK(tid2, FAIL, "H5Tcreate");
/* Insert fields */
ret=H5Tinsert(tid2, "i", HOFFSET(s1, i), H5T_NATIVE_INT);
CHECK(ret, FAIL, "H5Tinsert");
ret=H5Tinsert(tid2, "f", HOFFSET(s1, f), H5T_NATIVE_FLOAT);
CHECK(ret, FAIL, "H5Tinsert");
/* Create a datatype to refer to */
tid1 = H5Tvlen_create (tid2);
CHECK(tid1, FAIL, "H5Tvlen_create");
/* Create a dataset */
dataset=H5Dcreate(fid1,"Dataset1",tid1,sid1,H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate");
/* Write dataset to disk */
ret=H5Dwrite(dataset,tid1,H5S_ALL,H5S_ALL,H5P_DEFAULT,wdata);
CHECK(ret, FAIL, "H5Dwrite");
/* Change to the custom memory allocation routines for reading VL data */
xfer_pid=H5Pcreate(H5P_DATASET_XFER);
CHECK(xfer_pid, FAIL, "H5Pcreate");
ret=H5Pset_vlen_mem_manager(xfer_pid,test_vltypes_alloc_custom,&mem_used,test_vltypes_free_custom,&mem_used);
CHECK(ret, FAIL, "H5Pset_vlen_mem_manager");
/* Make certain the correct amount of memory will be used */
ret=H5Dvlen_get_buf_size(dataset,tid1,sid1,&size);
CHECK(ret, FAIL, "H5Dvlen_get_buf_size");
/* 10 elements allocated = 1 + 2 + 3 + 4 elements for each array position */
VERIFY(size,((SPACE1_DIM1*(SPACE1_DIM1+1))/2)*sizeof(s1),"H5Dvlen_get_buf_size");
/* Read dataset from disk */
ret=H5Dread(dataset,tid1,H5S_ALL,H5S_ALL,xfer_pid,rdata);
CHECK(ret, FAIL, "H5Dread");
/* Make certain the correct amount of memory has been used */
/* 10 elements allocated = 1 + 2 + 3 + 4 elements for each array position */
VERIFY(mem_used,((SPACE1_DIM1*(SPACE1_DIM1+1))/2)*sizeof(s1),"H5Dread");
/* Compare data read in */
for(i=0; i<SPACE1_DIM1; i++) {
if(wdata[i].len!=rdata[i].len) {
num_errs++;
printf("VL data length don't match!, wdata[%d].len=%d, rdata[%d].len=%d\n",(int)i,(int)wdata[i].len,(int)i,(int)rdata[i].len);
continue;
} /* end if */
for(j=0; j<rdata[i].len; j++) {
if( ((s1 *)wdata[i].p)[j].i != ((s1 *)rdata[i].p)[j].i ) {
num_errs++;
printf("VL data values don't match!, wdata[%d].p[%d].i=%d, rdata[%d].p[%d].i=%d\n",(int)i,(int)j, (int)((s1 *)wdata[i].p)[j].i, (int)i,(int)j, (int)((s1 *)rdata[i].p)[j].i);
continue;
} /* end if */
if( ((s1 *)wdata[i].p)[j].f != ((s1 *)rdata[i].p)[j].f ) {
num_errs++;
printf("VL data values don't match!, wdata[%d].p[%d].f=%f, rdata[%d].p[%d].f=%f\n",(int)i,(int)j, (double)((s1 *)wdata[i].p)[j].f, (int)i,(int)j, (double)((s1 *)rdata[i].p)[j].f);
continue;
} /* end if */
} /* end for */
} /* end for */
/* Reclaim the VL data */
ret=H5Dvlen_reclaim(tid1,sid1,xfer_pid,rdata);
CHECK(ret, FAIL, "H5Dvlen_reclaim");
/* Make certain the VL memory has been freed */
VERIFY(mem_used,0,"H5Dvlen_reclaim");
/* Reclaim the write VL data */
ret=H5Dvlen_reclaim(tid1,sid1,H5P_DEFAULT,wdata);
CHECK(ret, FAIL, "H5Dvlen_reclaim");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close datatype */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
/* Close datatype */
ret = H5Tclose(tid2);
CHECK(ret, FAIL, "H5Tclose");
/* Close disk dataspace */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
/* Close dataset transfer property list */
ret = H5Pclose(xfer_pid);
CHECK(ret, FAIL, "H5Pclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
} /* end test_vltypes_vlen_compound() */
/****************************************************************
**
** test_vltypes_compound_vlen_atomic(): Test basic VL datatype code.
** Tests compound datatypes with VL datatypes of atomic datatypes.
**
****************************************************************/
static void
test_vltypes_compound_vlen_atomic(void)
{
typedef struct { /* Struct that the VL sequences are composed of */
int i;
float f;
hvl_t v;
} s1;
s1 wdata[SPACE1_DIM1]; /* Information to write */
s1 rdata[SPACE1_DIM1]; /* Information read in */
hid_t fid1; /* HDF5 File IDs */
hid_t dataset; /* Dataset ID */
hid_t sid1; /* Dataspace ID */
hid_t tid1, tid2; /* Datatype IDs */
hid_t xfer_pid; /* Dataset transfer property list ID */
hsize_t dims1[] = {SPACE1_DIM1};
hsize_t size; /* Number of bytes which will be used */
uintn i,j; /* counting variables */
int mem_used=0; /* Memory used during allocation */
herr_t ret; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing Compound Datatypes with VL Atomic Datatype Component Functionality\n"));
/* Allocate and initialize VL data to write */
for(i=0; i<SPACE1_DIM1; i++) {
wdata[i].i=i*10;
wdata[i].f=(i*20)/3.0;
wdata[i].v.p=malloc((i+1)*sizeof(unsigned int));
wdata[i].v.len=i+1;
for(j=0; j<(i+1); j++)
((unsigned int *)wdata[i].v.p)[j]=i*10+j;
} /* end for */
/* Create file */
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fcreate");
/* Create dataspace for datasets */
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
CHECK(sid1, FAIL, "H5Screate_simple");
/* Create a VL datatype to refer to */
tid1 = H5Tvlen_create (H5T_NATIVE_UINT);
CHECK(tid1, FAIL, "H5Tvlen_create");
/* Create the base compound type */
tid2 = H5Tcreate(H5T_COMPOUND, sizeof(s1));
CHECK(tid2, FAIL, "H5Tcreate");
/* Insert fields */
ret=H5Tinsert(tid2, "i", HOFFSET(s1, i), H5T_NATIVE_INT);
CHECK(ret, FAIL, "H5Tinsert");
ret=H5Tinsert(tid2, "f", HOFFSET(s1, f), H5T_NATIVE_FLOAT);
CHECK(ret, FAIL, "H5Tinsert");
ret=H5Tinsert(tid2, "v", HOFFSET(s1, v), tid1);
CHECK(ret, FAIL, "H5Tinsert");
/* Create a dataset */
dataset=H5Dcreate(fid1,"Dataset1",tid2,sid1,H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate");
/* Write dataset to disk */
ret=H5Dwrite(dataset,tid2,H5S_ALL,H5S_ALL,H5P_DEFAULT,wdata);
CHECK(ret, FAIL, "H5Dwrite");
/* Change to the custom memory allocation routines for reading VL data */
xfer_pid=H5Pcreate(H5P_DATASET_XFER);
CHECK(xfer_pid, FAIL, "H5Pcreate");
ret=H5Pset_vlen_mem_manager(xfer_pid,test_vltypes_alloc_custom,&mem_used,test_vltypes_free_custom,&mem_used);
CHECK(ret, FAIL, "H5Pset_vlen_mem_manager");
/* Make certain the correct amount of memory will be used */
ret=H5Dvlen_get_buf_size(dataset,tid2,sid1,&size);
CHECK(ret, FAIL, "H5Dvlen_get_buf_size");
/* 10 elements allocated = 1 + 2 + 3 + 4 elements for each array position */
VERIFY(size,((SPACE1_DIM1*(SPACE1_DIM1+1))/2)*sizeof(unsigned int),"H5Dvlen_get_buf_size");
/* Read dataset from disk */
ret=H5Dread(dataset,tid2,H5S_ALL,H5S_ALL,xfer_pid,rdata);
CHECK(ret, FAIL, "H5Dread");
/* Make certain the correct amount of memory has been used */
/* 10 elements allocated = 1 + 2 + 3 + 4 elements for each array position */
VERIFY(mem_used,((SPACE1_DIM1*(SPACE1_DIM1+1))/2)*sizeof(unsigned int),"H5Dread");
/* Compare data read in */
for(i=0; i<SPACE1_DIM1; i++) {
if(wdata[i].i!=rdata[i].i) {
num_errs++;
printf("Integer components don't match!, wdata[%d].i=%d, rdata[%d].i=%d\n",(int)i,(int)wdata[i].i,(int)i,(int)rdata[i].i);
continue;
} /* end if */
if(wdata[i].f!=rdata[i].f) {
num_errs++;
printf("Float components don't match!, wdata[%d].f=%f, rdata[%d].f=%f\n",(int)i,(double)wdata[i].f,(int)i,(double)rdata[i].f);
continue;
} /* end if */
if(wdata[i].v.len!=rdata[i].v.len) {
num_errs++;
printf("VL data length don't match!, wdata[%d].v.len=%d, rdata[%d].v.len=%d\n",(int)i,(int)wdata[i].v.len,(int)i,(int)rdata[i].v.len);
continue;
} /* end if */
for(j=0; j<rdata[i].v.len; j++) {
if( ((unsigned int *)wdata[i].v.p)[j] != ((unsigned int *)rdata[i].v.p)[j] ) {
num_errs++;
printf("VL data values don't match!, wdata[%d].v.p[%d]=%d, rdata[%d].v.p[%d]=%d\n",(int)i,(int)j, (int)((unsigned int *)wdata[i].v.p)[j], (int)i,(int)j, (int)((unsigned int *)rdata[i].v.p)[j]);
continue;
} /* end if */
} /* end for */
} /* end for */
/* Reclaim the VL data */
ret=H5Dvlen_reclaim(tid2,sid1,xfer_pid,rdata);
CHECK(ret, FAIL, "H5Dvlen_reclaim");
/* Make certain the VL memory has been freed */
VERIFY(mem_used,0,"H5Dvlen_reclaim");
/* Reclaim the write VL data */
ret=H5Dvlen_reclaim(tid2,sid1,H5P_DEFAULT,wdata);
CHECK(ret, FAIL, "H5Dvlen_reclaim");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close datatype */
ret = H5Tclose(tid2);
CHECK(ret, FAIL, "H5Tclose");
/* Close datatype */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
/* Close disk dataspace */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
/* Close dataset transfer property list */
ret = H5Pclose(xfer_pid);
CHECK(ret, FAIL, "H5Pclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
} /* end test_vltypes_compound_vlen_atomic() */
/****************************************************************
**
** test_vltypes_vlen_vlen_atomic(): Test basic VL datatype code.
** Tests VL datatype with VL datatypes of atomic datatypes.
**
****************************************************************/
static unsigned long vlen_size_func(unsigned long n)
{
unsigned long u=1;
unsigned long tmp=1;
unsigned long result=1;
while(u<n) {
u++;
tmp+=u;
result+=tmp;
}
return(result);
}
/****************************************************************
**
** test_vltypes_vlen_vlen_atomic(): Test basic VL datatype code.
** Tests VL datatype with VL datatypes of atomic datatypes.
**
****************************************************************/
static void
test_vltypes_vlen_vlen_atomic(void)
{
hvl_t wdata[SPACE1_DIM1]; /* Information to write */
hvl_t rdata[SPACE1_DIM1]; /* Information read in */
hvl_t *t1, *t2; /* Temporary pointer to VL information */
hid_t fid1; /* HDF5 File IDs */
hid_t dataset; /* Dataset ID */
hid_t sid1; /* Dataspace ID */
hid_t tid1, tid2; /* Datatype IDs */
hid_t xfer_pid; /* Dataset transfer property list ID */
hsize_t dims1[] = {SPACE1_DIM1};
hsize_t size; /* Number of bytes which will be used */
uintn i,j,k; /* counting variables */
int mem_used=0; /* Memory used during allocation */
herr_t ret; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing VL Datatypes with VL Atomic Datatype Component Functionality\n"));
/* Allocate and initialize VL data to write */
for(i=0; i<SPACE1_DIM1; i++) {
wdata[i].p=malloc((i+1)*sizeof(hvl_t));
if(wdata[i].p==NULL) {
printf("Cannot allocate memory for VL data! i=%u\n",i);
num_errs++;
return;
} /* end if */
wdata[i].len=i+1;
for(t1=wdata[i].p,j=0; j<(i+1); j++, t1++) {
t1->p=malloc((j+1)*sizeof(unsigned int));
if(t1->p==NULL) {
printf("Cannot allocate memory for VL data! i=%u, j=%u\n",i,j);
num_errs++;
return;
} /* end if */
t1->len=j+1;
for(k=0; k<(j+1); k++)
((unsigned int *)t1->p)[k]=i*100+j*10+k;
} /* end for */
} /* end for */
/* Create file */
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fcreate");
/* Create dataspace for datasets */
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
CHECK(sid1, FAIL, "H5Screate_simple");
/* Create a VL datatype to refer to */
tid1 = H5Tvlen_create (H5T_NATIVE_UINT);
CHECK(tid1, FAIL, "H5Tvlen_create");
/* Create the base VL type */
tid2 = H5Tvlen_create (tid1);
CHECK(tid2, FAIL, "H5Tvlen_create");
/* Create a dataset */
dataset=H5Dcreate(fid1,"Dataset1",tid2,sid1,H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate");
/* Write dataset to disk */
ret=H5Dwrite(dataset,tid2,H5S_ALL,H5S_ALL,H5P_DEFAULT,wdata);
CHECK(ret, FAIL, "H5Dwrite");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close datatype */
ret = H5Tclose(tid2);
CHECK(ret, FAIL, "H5Tclose");
/* Close datatype */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
/* Close disk dataspace */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Create file */
fid1 = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fopen");
/* Create dataspace for datasets */
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
CHECK(sid1, FAIL, "H5Screate_simple");
/* Create a VL datatype to refer to */
tid1 = H5Tvlen_create (H5T_NATIVE_UINT);
CHECK(tid1, FAIL, "H5Tvlen_create");
/* Create the base VL type */
tid2 = H5Tvlen_create (tid1);
CHECK(tid2, FAIL, "H5Tvlen_create");
/* Open a dataset */
dataset=H5Dopen(fid1,"Dataset1");
CHECK(dataset, FAIL, "H5Dopen");
/* Change to the custom memory allocation routines for reading VL data */
xfer_pid=H5Pcreate(H5P_DATASET_XFER);
CHECK(xfer_pid, FAIL, "H5Pcreate");
ret=H5Pset_vlen_mem_manager(xfer_pid,test_vltypes_alloc_custom,&mem_used,test_vltypes_free_custom,&mem_used);
CHECK(ret, FAIL, "H5Pset_vlen_mem_manager");
/* Make certain the correct amount of memory was used */
ret=H5Dvlen_get_buf_size(dataset,tid2,sid1,&size);
CHECK(ret, FAIL, "H5Dvlen_get_buf_size");
/* 10 hvl_t elements allocated = 1 + 2 + 3 + 4 elements for each array position */
/* 20 unsigned int elements allocated = 1 + 3 + 6 + 10 elements */
VERIFY(size,((SPACE1_DIM1*(SPACE1_DIM1+1))/2)*sizeof(hvl_t)+vlen_size_func(SPACE1_DIM1)*sizeof(unsigned int),"H5Dvlen_get_buf_size");
/* Read dataset from disk */
ret=H5Dread(dataset,tid2,H5S_ALL,H5S_ALL,xfer_pid,rdata);
CHECK(ret, FAIL, "H5Dread");
/* Make certain the correct amount of memory has been used */
/* 10 hvl_t elements allocated = 1 + 2 + 3 + 4 elements for each array position */
/* 20 unsigned int elements allocated = 1 + 3 + 6 + 10 elements */
VERIFY(mem_used,((SPACE1_DIM1*(SPACE1_DIM1+1))/2)*sizeof(hvl_t)+vlen_size_func(SPACE1_DIM1)*sizeof(unsigned int),"H5Dread");
/* Compare data read in */
for(i=0; i<SPACE1_DIM1; i++) {
if(wdata[i].len!=rdata[i].len) {
num_errs++;
printf("VL data length don't match!, wdata[%d].len=%d, rdata[%d].len=%d\n",(int)i,(int)wdata[i].len,(int)i,(int)rdata[i].len);
continue;
} /* end if */
for(t1=wdata[i].p, t2=rdata[i].p, j=0; j<rdata[i].len; j++, t1++, t2++) {
if(t1->len!=t2->len) {
num_errs++;
printf("VL data length don't match!, i=%d, j=%d, t1->len=%d, t2->len=%d\n",(int)i,(int)j,(int)t1->len,(int)t2->len);
continue;
} /* end if */
for(k=0; k<t2->len; k++) {
if( ((unsigned int *)t1->p)[k] != ((unsigned int *)t2->p)[k] ) {
num_errs++;
printf("VL data values don't match!, t1->p[%d]=%d, t2->p[%d]=%d\n",(int)k, (int)((unsigned int *)t1->p)[k], (int)k, (int)((unsigned int *)t2->p)[k]);
continue;
} /* end if */
} /* end for */
} /* end for */
} /* end for */
/* Reclaim all the (nested) VL data */
ret=H5Dvlen_reclaim(tid2,sid1,xfer_pid,rdata);
CHECK(ret, FAIL, "H5Dvlen_reclaim");
/* Make certain the VL memory has been freed */
VERIFY(mem_used,0,"H5Dvlen_reclaim");
/* Reclaim the write VL data */
ret=H5Dvlen_reclaim(tid2,sid1,H5P_DEFAULT,wdata);
CHECK(ret, FAIL, "H5Dvlen_reclaim");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close datatype */
ret = H5Tclose(tid2);
CHECK(ret, FAIL, "H5Tclose");
/* Close datatype */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
/* Close disk dataspace */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
/* Close dataset transfer property list */
ret = H5Pclose(xfer_pid);
CHECK(ret, FAIL, "H5Pclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
} /* end test_vltypes_vlen_vlen_atomic() */
/****************************************************************
**
** test_vltypes(): Main VL datatype testing routine.
**
****************************************************************/
void
test_vltypes(void)
{
/* Output message about test being performed */
MESSAGE(5, ("Testing Variable-Length Datatypes\n"));
/* These next tests use the same file */
test_vltypes_vlen_atomic(); /* Test VL atomic datatypes */
test_vltypes_vlen_compound(); /* Test VL compound datatypes */
test_vltypes_compound_vlen_atomic(); /* Test compound datatypes with VL atomic components */
test_vltypes_vlen_vlen_atomic(); /* Test VL datatype with VL atomic components */
} /* test_vltypes() */
/*-------------------------------------------------------------------------
* Function: cleanup_vltypes
*
* Purpose: Cleanup temporary test files
*
* Return: none
*
* Programmer: Quincey Koziol
* June 8, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
void
cleanup_vltypes(void)
{
remove(FILENAME);
}
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