mirror of
https://github.com/HDFGroup/hdf5.git
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1139 lines
34 KiB
C
1139 lines
34 KiB
C
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the files COPYING and Copyright.html. COPYING can be found at the root *
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* of the source code distribution tree; Copyright.html can be found at the *
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* root level of an installed copy of the electronic HDF5 document set and *
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* is linked from the top-level documents page. It can also be found at *
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* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
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* access to either file, you may request a copy from help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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#include <stdlib.h>
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#include <string.h>
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#include "h5hltest.h"
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#include "H5srcdir.h"
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#include "H5DOpublic.h"
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#include <math.h>
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#if defined(H5_HAVE_ZLIB_H) && !defined(H5_ZLIB_HEADER)
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# define H5_ZLIB_HEADER "zlib.h"
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#endif
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#if defined(H5_ZLIB_HEADER)
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# include H5_ZLIB_HEADER /* "zlib.h" */
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#endif
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#define FILE_NAME "test_dectris.h5"
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#define DATASETNAME1 "direct_write"
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#define DATASETNAME2 "skip_one_filter"
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#define DATASETNAME3 "skip_two_filters"
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#define DATASETNAME4 "data_conv"
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#define DATASETNAME5 "contiguous_dset"
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#define DATASETNAME6 "invalid_argue"
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#define RANK 2
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#define NX 16
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#define NY 16
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#define CHUNK_NX 4
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#define CHUNK_NY 4
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#define DEFLATE_SIZE_ADJUST(s) (ceil(((double)(s))*1.001F)+12)
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/* Temporary filter IDs used for testing */
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#define H5Z_FILTER_BOGUS1 305
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#define H5Z_FILTER_BOGUS2 306
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#define ADD_ON 7
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#define FACTOR 3
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/* Local prototypes for filter functions */
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static size_t filter_bogus1(unsigned int flags, size_t cd_nelmts,
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const unsigned int *cd_values, size_t nbytes, size_t *buf_size, void **buf);
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static size_t filter_bogus2(unsigned int flags, size_t cd_nelmts,
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const unsigned int *cd_values, size_t nbytes, size_t *buf_size, void **buf);
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/* This message derives from H5Z */
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const H5Z_class2_t H5Z_BOGUS1[1] = {{
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H5Z_CLASS_T_VERS, /* H5Z_class_t version */
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H5Z_FILTER_BOGUS1, /* Filter id number */
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1, 1, /* Encoding and decoding enabled */
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"bogus1", /* Filter name for debugging */
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NULL, /* The "can apply" callback */
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NULL, /* The "set local" callback */
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filter_bogus1, /* The actual filter function */
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}};
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const H5Z_class2_t H5Z_BOGUS2[1] = {{
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H5Z_CLASS_T_VERS, /* H5Z_class_t version */
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H5Z_FILTER_BOGUS2, /* Filter id number */
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1, 1, /* Encoding and decoding enabled */
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"bogus2", /* Filter name for debugging */
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NULL, /* The "can apply" callback */
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NULL, /* The "set local" callback */
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filter_bogus2, /* The actual filter function */
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}};
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/*-------------------------------------------------------------------------
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* Function: test_direct_chunk_write
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*
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* Purpose: Test the basic functionality of H5DOwrite_chunk
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*
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* Return: Success: 0
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*
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* Failure: 1
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*
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* Programmer: Raymond Lu
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* 30 November 2012
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*
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*-------------------------------------------------------------------------
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*/
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#ifdef H5_HAVE_FILTER_DEFLATE
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static int
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test_direct_chunk_write (hid_t file)
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{
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hid_t dataspace = -1, dataset = -1;
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hid_t mem_space = -1;
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hid_t cparms = -1, dxpl = -1;
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hsize_t dims[2] = {NX, NY};
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hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
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hsize_t chunk_dims[2] ={CHUNK_NX, CHUNK_NY};
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herr_t status;
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int ret;
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int data[NX][NY];
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int i, j, n;
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unsigned filter_mask = 0;
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int direct_buf[CHUNK_NX][CHUNK_NY];
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int check_chunk[CHUNK_NX][CHUNK_NY];
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hsize_t offset[2] = {0, 0};
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size_t buf_size = CHUNK_NX*CHUNK_NY*sizeof(int);
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const Bytef *z_src = (const Bytef*)(direct_buf);
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Bytef *z_dst; /*destination buffer */
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uLongf z_dst_nbytes = (uLongf)DEFLATE_SIZE_ADJUST(buf_size);
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uLong z_src_nbytes = (uLong)buf_size;
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int aggression = 9; /* Compression aggression setting */
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void *outbuf = NULL; /* Pointer to new buffer */
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hsize_t start[2]; /* Start of hyperslab */
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hsize_t stride[2]; /* Stride of hyperslab */
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hsize_t count[2]; /* Block count */
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hsize_t block[2]; /* Block sizes */
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TESTING("basic functionality of H5DOwrite_chunk");
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/*
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* Create the data space with unlimited dimensions.
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*/
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if((dataspace = H5Screate_simple(RANK, dims, maxdims)) < 0)
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goto error;
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if((mem_space = H5Screate_simple(RANK, chunk_dims, NULL)) < 0)
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goto error;
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/*
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* Modify dataset creation properties, i.e. enable chunking and compression
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*/
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if((cparms = H5Pcreate(H5P_DATASET_CREATE)) < 0)
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goto error;
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if((status = H5Pset_chunk( cparms, RANK, chunk_dims)) < 0)
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goto error;
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if((status = H5Pset_deflate( cparms, (unsigned) aggression)) < 0)
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goto error;
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/*
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* Create a new dataset within the file using cparms
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* creation properties.
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*/
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if((dataset = H5Dcreate2(file, DATASETNAME1, H5T_NATIVE_INT, dataspace, H5P_DEFAULT,
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cparms, H5P_DEFAULT)) < 0)
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goto error;
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/* Initialize the dataset */
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for(i = n = 0; i < NX; i++)
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for(j = 0; j < NY; j++)
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data[i][j] = n++;
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if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0)
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goto error;
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/*
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* Write the data for the dataset. It should stay in the chunk cache.
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* It will be evicted from the cache by the H5DOwrite_chunk calls.
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*/
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if((status = H5Dwrite(dataset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL,
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dxpl, data)) < 0)
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goto error;
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/* Initialize data for one chunk */
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for(i = n = 0; i < CHUNK_NX; i++)
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for(j = 0; j < CHUNK_NY; j++)
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direct_buf[i][j] = n++;
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/* Allocate output (compressed) buffer */
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outbuf = HDmalloc(z_dst_nbytes);
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z_dst = (Bytef *)outbuf;
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/* Perform compression from the source to the destination buffer */
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ret = compress2(z_dst, &z_dst_nbytes, z_src, z_src_nbytes, aggression);
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/* Check for various zlib errors */
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if(Z_BUF_ERROR == ret) {
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fprintf(stderr, "overflow");
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goto error;
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} else if(Z_MEM_ERROR == ret) {
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fprintf(stderr, "deflate memory error");
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goto error;
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} else if(Z_OK != ret) {
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fprintf(stderr, "other deflate error");
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goto error;
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}
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/* Write the compressed chunk data repeatedly to cover all the chunks in the
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* dataset, using the direct writing function. */
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for(i=0; i<NX/CHUNK_NX; i++) {
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for(j=0; j<NY/CHUNK_NY; j++) {
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status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, z_dst_nbytes, outbuf);
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offset[1] += CHUNK_NY;
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}
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offset[0] += CHUNK_NX;
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offset[1] = 0;
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}
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if(outbuf)
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HDfree(outbuf);
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if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0)
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goto error;
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if(H5Dclose(dataset) < 0)
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goto error;
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if((dataset = H5Dopen2(file, DATASETNAME1, H5P_DEFAULT)) < 0)
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goto error;
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/*
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* Select hyperslab for one chunk in the file
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*/
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start[0] = CHUNK_NX; start[1] = CHUNK_NY;
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stride[0] = 1; stride[1] = 1;
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count[0] = 1; count[1] = 1;
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block[0] = CHUNK_NX; block[1] = CHUNK_NY;
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if((status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, start, stride, count, block)) < 0)
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goto error;
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/* Read the chunk back */
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if((status = H5Dread(dataset, H5T_NATIVE_INT, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0)
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goto error;
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/* Check that the values read are the same as the values written */
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for(i = 0; i < CHUNK_NX; i++) {
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for(j = 0; j < CHUNK_NY; j++) {
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if(direct_buf[i][j] != check_chunk[i][j]) {
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printf(" 1. Read different values than written.");
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printf(" At index %d,%d\n", i, j);
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printf(" direct_buf=%d, check_chunk=%d\n", direct_buf[i][j], check_chunk[i][j]);
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goto error;
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}
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}
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}
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/* Reinitialize different data for one chunk */
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for(i = 0; i < CHUNK_NX; i++)
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for(j = 0; j < CHUNK_NY; j++)
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direct_buf[i][j] = i + j;
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/* Allocate output (compressed) buffer */
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outbuf = HDmalloc(z_dst_nbytes);
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z_dst = (Bytef *)outbuf;
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/* Perform compression from the source to the destination buffer */
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ret = compress2(z_dst, &z_dst_nbytes, z_src, z_src_nbytes, aggression);
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/* Check for various zlib errors */
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if(Z_BUF_ERROR == ret) {
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fprintf(stderr, "overflow");
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goto error;
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} else if(Z_MEM_ERROR == ret) {
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fprintf(stderr, "deflate memory error");
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goto error;
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} else if(Z_OK != ret) {
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fprintf(stderr, "other deflate error");
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goto error;
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}
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/* Rewrite the compressed chunk data repeatedly to cover all the chunks in the
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* dataset, using the direct writing function. */
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offset[0] = offset[1] = 0;
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for(i=0; i<NX/CHUNK_NX; i++) {
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for(j=0; j<NY/CHUNK_NY; j++) {
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status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, z_dst_nbytes, outbuf);
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offset[1] += CHUNK_NY;
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}
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offset[0] += CHUNK_NX;
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offset[1] = 0;
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}
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if(outbuf)
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HDfree(outbuf);
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if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0)
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goto error;
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if(H5Dclose(dataset) < 0)
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goto error;
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if((dataset = H5Dopen2(file, DATASETNAME1, H5P_DEFAULT)) < 0)
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goto error;
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/* Read the chunk back */
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if((status = H5Dread(dataset, H5T_NATIVE_INT, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0)
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goto error;
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/* Check that the values read are the same as the values written */
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for(i = 0; i < CHUNK_NX; i++) {
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for(j = 0; j < CHUNK_NY; j++) {
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if(direct_buf[i][j] != check_chunk[i][j]) {
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printf(" 2. Read different values than written.");
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printf(" At index %d,%d\n", i, j);
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printf(" direct_buf=%d, check_chunk=%d\n", direct_buf[i][j], check_chunk[i][j]);
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goto error;
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}
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}
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}
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/*
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* Close/release resources.
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*/
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H5Dclose(dataset);
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H5Sclose(mem_space);
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H5Sclose(dataspace);
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H5Pclose(cparms);
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H5Pclose(dxpl);
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PASSED();
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return 0;
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error:
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H5E_BEGIN_TRY {
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H5Dclose(dataset);
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H5Sclose(mem_space);
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H5Sclose(dataspace);
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H5Pclose(cparms);
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H5Pclose(dxpl);
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} H5E_END_TRY;
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if(outbuf)
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HDfree(outbuf);
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return 1;
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}
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#endif /* H5_HAVE_FILTER_DEFLATE */
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/*-------------------------------------------------------------------------
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* Function: test_skip_compress_write1
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*
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* Purpose: Test skipping compression filter when it is the only filter
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* for the dataset
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*
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* Return: Success: 0
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*
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* Failure: 1
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*
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* Programmer: Raymond Lu
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* 30 November 2012
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*
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*-------------------------------------------------------------------------
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*/
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static int
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test_skip_compress_write1(hid_t file)
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{
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hid_t dataspace = -1, dataset = -1;
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hid_t mem_space = -1;
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hid_t cparms = -1, dxpl = -1;
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hsize_t dims[2] = {NX, NY};
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hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
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hsize_t chunk_dims[2] ={CHUNK_NX, CHUNK_NY};
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herr_t status;
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int i, j, n;
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unsigned filter_mask = 0;
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int direct_buf[CHUNK_NX][CHUNK_NY];
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int check_chunk[CHUNK_NX][CHUNK_NY];
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hsize_t offset[2] = {0, 0};
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size_t buf_size = CHUNK_NX*CHUNK_NY*sizeof(int);
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int aggression = 9; /* Compression aggression setting */
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hsize_t start[2]; /* Start of hyperslab */
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hsize_t stride[2]; /* Stride of hyperslab */
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hsize_t count[2]; /* Block count */
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hsize_t block[2]; /* Block sizes */
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TESTING("skipping compression filter for H5DOwrite_chunk");
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/*
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* Create the data space with unlimited dimensions.
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*/
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if((dataspace = H5Screate_simple(RANK, dims, maxdims)) < 0)
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goto error;
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|
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if((mem_space = H5Screate_simple(RANK, chunk_dims, NULL)) < 0)
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goto error;
|
|
|
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/*
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* Modify dataset creation properties, i.e. enable chunking and compression
|
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*/
|
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if((cparms = H5Pcreate(H5P_DATASET_CREATE)) < 0)
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goto error;
|
|
|
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if((status = H5Pset_chunk( cparms, RANK, chunk_dims)) < 0)
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goto error;
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|
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if((status = H5Pset_deflate( cparms, (unsigned ) aggression)) < 0)
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goto error;
|
|
|
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/*
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* Create a new dataset within the file using cparms
|
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* creation properties.
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*/
|
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if((dataset = H5Dcreate2(file, DATASETNAME2, H5T_NATIVE_INT, dataspace, H5P_DEFAULT,
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cparms, H5P_DEFAULT)) < 0)
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goto error;
|
|
|
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if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0)
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goto error;
|
|
|
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/* Initialize data for one chunk */
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for(i = n = 0; i < CHUNK_NX; i++)
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for(j = 0; j < CHUNK_NY; j++) {
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direct_buf[i][j] = n++;
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}
|
|
|
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/* write the uncompressed chunk data repeatedly to dataset, using the direct writing function.
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* Indicate skipping the compression filter. */
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offset[0] = CHUNK_NX;
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offset[1] = CHUNK_NY;
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|
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filter_mask = 0x00000001;
|
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|
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if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) < 0)
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goto error;
|
|
|
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if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0)
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goto error;
|
|
|
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if(H5Dclose(dataset) < 0)
|
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goto error;
|
|
|
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if((dataset = H5Dopen2(file, DATASETNAME2, H5P_DEFAULT)) < 0)
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goto error;
|
|
|
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/*
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* Select hyperslab for the chunk just written in the file
|
|
*/
|
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start[0] = CHUNK_NX; start[1] = CHUNK_NY;
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stride[0] = 1; stride[1] = 1;
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count[0] = 1; count[1] = 1;
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block[0] = CHUNK_NX; block[1] = CHUNK_NY;
|
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if((status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, start, stride, count, block)) < 0)
|
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goto error;
|
|
|
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/* Read the chunk back */
|
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if((status = H5Dread(dataset, H5T_NATIVE_INT, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0)
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goto error;
|
|
|
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/* Check that the values read are the same as the values written */
|
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for(i = 0; i < CHUNK_NX; i++) {
|
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for(j = 0; j < CHUNK_NY; j++) {
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if(direct_buf[i][j] != check_chunk[i][j]) {
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printf(" 1. Read different values than written.");
|
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printf(" At index %d,%d\n", i, j);
|
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printf(" direct_buf=%d, check_chunk=%d\n", direct_buf[i][j], check_chunk[i][j]);
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goto error;
|
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}
|
|
}
|
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}
|
|
|
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/*
|
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* Close/release resources.
|
|
*/
|
|
H5Dclose(dataset);
|
|
H5Sclose(mem_space);
|
|
H5Sclose(dataspace);
|
|
H5Pclose(cparms);
|
|
H5Pclose(dxpl);
|
|
|
|
PASSED();
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return 0;
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|
|
error:
|
|
H5E_BEGIN_TRY {
|
|
H5Dclose(dataset);
|
|
H5Sclose(mem_space);
|
|
H5Sclose(dataspace);
|
|
H5Pclose(cparms);
|
|
H5Pclose(dxpl);
|
|
} H5E_END_TRY;
|
|
|
|
return 1;
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: filter_bogus1
|
|
*
|
|
* Purpose: A bogus filte that adds ADD_ON to the original value
|
|
*
|
|
* Return: Success: Data chunk size
|
|
*
|
|
* Programmer: Raymond Lu
|
|
* 30 November 2012
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static size_t
|
|
filter_bogus1(unsigned int flags, size_t UNUSED cd_nelmts,
|
|
const unsigned int UNUSED *cd_values, size_t nbytes,
|
|
size_t *buf_size, void **buf)
|
|
{
|
|
int *int_ptr=(int *)*buf; /* Pointer to the data values */
|
|
ssize_t buf_left=(ssize_t)*buf_size; /* Amount of data buffer left to process */
|
|
|
|
if(flags & H5Z_FLAG_REVERSE) { /* read */
|
|
/* Substract the "add on" value to all the data values */
|
|
while(buf_left>0) {
|
|
*int_ptr++ -= (int)ADD_ON;
|
|
buf_left -= (ssize_t)sizeof(int);
|
|
} /* end while */
|
|
} /* end if */
|
|
else { /* write */
|
|
/* Add the "add on" value to all the data values */
|
|
while(buf_left>0) {
|
|
*int_ptr++ += (int)ADD_ON;
|
|
buf_left -= (ssize_t)sizeof(int);
|
|
} /* end while */
|
|
} /* end else */
|
|
|
|
return nbytes;
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: filter_bogus2
|
|
*
|
|
* Purpose: A bogus filter that multiplies the original value by FACTOR.
|
|
*
|
|
* Return: Success: Data chunk size
|
|
*
|
|
* Programmer: Raymond Lu
|
|
* 30 November 2012
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static size_t
|
|
filter_bogus2(unsigned int flags, size_t UNUSED cd_nelmts,
|
|
const unsigned int UNUSED *cd_values, size_t nbytes,
|
|
size_t *buf_size, void **buf)
|
|
{
|
|
int *int_ptr=(int *)*buf; /* Pointer to the data values */
|
|
ssize_t buf_left=(ssize_t)*buf_size; /* Amount of data buffer left to process */
|
|
|
|
if(flags & H5Z_FLAG_REVERSE) { /* read */
|
|
/* Substract the "add on" value to all the data values */
|
|
while(buf_left>0) {
|
|
*int_ptr++ /= (int)FACTOR;
|
|
buf_left -= (ssize_t)sizeof(int);
|
|
} /* end while */
|
|
} /* end if */
|
|
else { /* write */
|
|
/* Add the "add on" value to all the data values */
|
|
while(buf_left>0) {
|
|
*int_ptr++ *= (int)FACTOR;
|
|
buf_left -= (ssize_t)sizeof(int);
|
|
} /* end while */
|
|
} /* end else */
|
|
|
|
return nbytes;
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: test_skip_compress_write2
|
|
*
|
|
* Purpose: Test skipping compression filter when there are three filters
|
|
* for the dataset
|
|
*
|
|
* Return: Success: 0
|
|
*
|
|
* Failure: 1
|
|
*
|
|
* Programmer: Raymond Lu
|
|
* 30 November 2012
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static int
|
|
test_skip_compress_write2(hid_t file)
|
|
{
|
|
hid_t dataspace = -1, dataset = -1;
|
|
hid_t mem_space = -1;
|
|
hid_t cparms = -1, dxpl = -1;
|
|
hsize_t dims[2] = {NX, NY};
|
|
hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
|
|
hsize_t chunk_dims[2] ={CHUNK_NX, CHUNK_NY};
|
|
herr_t status;
|
|
int i, j, n;
|
|
|
|
unsigned filter_mask = 0;
|
|
int origin_direct_buf[CHUNK_NX][CHUNK_NY];
|
|
int direct_buf[CHUNK_NX][CHUNK_NY];
|
|
int check_chunk[CHUNK_NX][CHUNK_NY];
|
|
hsize_t offset[2] = {0, 0};
|
|
size_t buf_size = CHUNK_NX*CHUNK_NY*sizeof(int);
|
|
int aggression = 9; /* Compression aggression setting */
|
|
|
|
hsize_t start[2]; /* Start of hyperslab */
|
|
hsize_t stride[2]; /* Stride of hyperslab */
|
|
hsize_t count[2]; /* Block count */
|
|
hsize_t block[2]; /* Block sizes */
|
|
|
|
TESTING("skipping compression filters but keep two other filters");
|
|
|
|
/*
|
|
* Create the data space with unlimited dimensions.
|
|
*/
|
|
if((dataspace = H5Screate_simple(RANK, dims, maxdims)) < 0)
|
|
goto error;
|
|
|
|
if((mem_space = H5Screate_simple(RANK, chunk_dims, NULL)) < 0)
|
|
goto error;
|
|
|
|
/*
|
|
* Modify dataset creation properties, i.e. enable chunking and compression.
|
|
* The order of filters is bogus 1 + deflate + bogus 2.
|
|
*/
|
|
if((cparms = H5Pcreate(H5P_DATASET_CREATE)) < 0)
|
|
goto error;
|
|
|
|
if((status = H5Pset_chunk( cparms, RANK, chunk_dims)) < 0)
|
|
goto error;
|
|
|
|
/* Register and enable first bogus filter */
|
|
if(H5Zregister (H5Z_BOGUS1) < 0)
|
|
goto error;
|
|
|
|
if(H5Pset_filter(cparms, H5Z_FILTER_BOGUS1, 0, (size_t)0, NULL) < 0)
|
|
goto error;
|
|
|
|
/* Enable compression filter */
|
|
if((status = H5Pset_deflate( cparms, (unsigned) aggression)) < 0)
|
|
goto error;
|
|
|
|
/* Register and enable second bogus filter */
|
|
if(H5Zregister (H5Z_BOGUS2) < 0)
|
|
goto error;
|
|
|
|
if(H5Pset_filter(cparms, H5Z_FILTER_BOGUS2, 0, (size_t)0, NULL) < 0)
|
|
goto error;
|
|
|
|
/*
|
|
* Create a new dataset within the file using cparms
|
|
* creation properties.
|
|
*/
|
|
if((dataset = H5Dcreate2(file, DATASETNAME3, H5T_NATIVE_INT, dataspace, H5P_DEFAULT,
|
|
cparms, H5P_DEFAULT)) < 0)
|
|
goto error;
|
|
|
|
if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0)
|
|
goto error;
|
|
|
|
/* Initialize data for one chunk. Apply operations of two bogus filters to the chunk */
|
|
for(i = n = 0; i < CHUNK_NX; i++)
|
|
for(j = 0; j < CHUNK_NY; j++) {
|
|
origin_direct_buf[i][j] = n++;
|
|
direct_buf[i][j] = (origin_direct_buf[i][j] + ADD_ON) * FACTOR;
|
|
}
|
|
|
|
/* write the uncompressed chunk data repeatedly to dataset, using the direct writing function.
|
|
* Indicate skipping the compression filter but keep the other two bogus filters */
|
|
offset[0] = CHUNK_NX;
|
|
offset[1] = CHUNK_NY;
|
|
|
|
/* compression filter is the middle one to be skipped */
|
|
filter_mask = 0x00000002;
|
|
|
|
if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) < 0)
|
|
goto error;
|
|
|
|
if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0)
|
|
goto error;
|
|
|
|
if(H5Dclose(dataset) < 0)
|
|
goto error;
|
|
|
|
if((dataset = H5Dopen2(file, DATASETNAME3, H5P_DEFAULT)) < 0)
|
|
goto error;
|
|
|
|
/*
|
|
* Select hyperslab for one chunk in the file
|
|
*/
|
|
start[0] = CHUNK_NX; start[1] = CHUNK_NY;
|
|
stride[0] = 1; stride[1] = 1;
|
|
count[0] = 1; count[1] = 1;
|
|
block[0] = CHUNK_NX; block[1] = CHUNK_NY;
|
|
if((status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, start, stride, count, block)) < 0)
|
|
goto error;
|
|
|
|
/* Read the chunk back */
|
|
if((status = H5Dread(dataset, H5T_NATIVE_INT, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0)
|
|
goto error;
|
|
|
|
/* Check that the values read are the same as the values written */
|
|
for(i = 0; i < CHUNK_NX; i++) {
|
|
for(j = 0; j < CHUNK_NY; j++) {
|
|
if(origin_direct_buf[i][j] != check_chunk[i][j]) {
|
|
printf(" 1. Read different values than written.");
|
|
printf(" At index %d,%d\n", i, j);
|
|
printf(" origin_direct_buf=%d, check_chunk=%d\n", origin_direct_buf[i][j], check_chunk[i][j]);
|
|
goto error;
|
|
}
|
|
}
|
|
}
|
|
|
|
/*
|
|
* Close/release resources.
|
|
*/
|
|
H5Dclose(dataset);
|
|
H5Sclose(mem_space);
|
|
H5Sclose(dataspace);
|
|
H5Pclose(cparms);
|
|
H5Pclose(dxpl);
|
|
|
|
PASSED();
|
|
return 0;
|
|
|
|
error:
|
|
H5E_BEGIN_TRY {
|
|
H5Dclose(dataset);
|
|
H5Sclose(mem_space);
|
|
H5Sclose(dataspace);
|
|
H5Pclose(cparms);
|
|
H5Pclose(dxpl);
|
|
} H5E_END_TRY;
|
|
|
|
return 1;
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: test_data_conv
|
|
*
|
|
* Purpose: Test data conversion
|
|
*
|
|
* Return: Success: 0
|
|
*
|
|
* Failure: 1
|
|
*
|
|
* Programmer: Raymond Lu
|
|
* 30 November 2012
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static int
|
|
test_data_conv(hid_t file)
|
|
{
|
|
typedef struct {
|
|
int a, b, c[4], d, e;
|
|
} src_type_t;
|
|
typedef struct {
|
|
int a, c[4], e;
|
|
} dst_type_t;
|
|
|
|
hid_t dataspace = -1, dataset = -1;
|
|
hid_t mem_space = -1;
|
|
hid_t cparms = -1, dxpl = -1;
|
|
hsize_t dims[2] = {NX, NY};
|
|
hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
|
|
hsize_t chunk_dims[2] ={CHUNK_NX, CHUNK_NY};
|
|
herr_t status;
|
|
int i, j, n;
|
|
const hsize_t four = 4;
|
|
hid_t st=-1, dt=-1;
|
|
hid_t array_dt;
|
|
|
|
unsigned filter_mask = 0;
|
|
src_type_t direct_buf[CHUNK_NX][CHUNK_NY];
|
|
dst_type_t check_chunk[CHUNK_NX][CHUNK_NY];
|
|
hsize_t offset[2] = {0, 0};
|
|
size_t buf_size = CHUNK_NX*CHUNK_NY*sizeof(src_type_t);
|
|
|
|
hsize_t start[2]; /* Start of hyperslab */
|
|
hsize_t stride[2]; /* Stride of hyperslab */
|
|
hsize_t count[2]; /* Block count */
|
|
hsize_t block[2]; /* Block sizes */
|
|
|
|
TESTING("data conversion for H5DOwrite_chunk");
|
|
|
|
/*
|
|
* Create the data space with unlimited dimensions.
|
|
*/
|
|
if((dataspace = H5Screate_simple(RANK, dims, maxdims)) < 0)
|
|
goto error;
|
|
|
|
if((mem_space = H5Screate_simple(RANK, chunk_dims, NULL)) < 0)
|
|
goto error;
|
|
|
|
/*
|
|
* Modify dataset creation properties, i.e. enable chunking
|
|
*/
|
|
if((cparms = H5Pcreate(H5P_DATASET_CREATE)) < 0)
|
|
goto error;
|
|
|
|
if((status = H5Pset_chunk( cparms, RANK, chunk_dims)) < 0)
|
|
goto error;
|
|
|
|
/* Build hdf5 datatypes */
|
|
array_dt = H5Tarray_create2(H5T_NATIVE_INT, 1, &four);
|
|
if((st = H5Tcreate(H5T_COMPOUND, sizeof(src_type_t))) < 0 ||
|
|
H5Tinsert(st, "a", HOFFSET(src_type_t, a), H5T_NATIVE_INT) < 0 ||
|
|
H5Tinsert(st, "b", HOFFSET(src_type_t, b), H5T_NATIVE_INT) < 0 ||
|
|
H5Tinsert(st, "c", HOFFSET(src_type_t, c), array_dt) < 0 ||
|
|
H5Tinsert(st, "d", HOFFSET(src_type_t, d), H5T_NATIVE_INT) < 0 ||
|
|
H5Tinsert(st, "e", HOFFSET(src_type_t, e), H5T_NATIVE_INT) < 0)
|
|
goto error;
|
|
|
|
if(H5Tclose(array_dt) < 0)
|
|
goto error;
|
|
|
|
array_dt = H5Tarray_create2(H5T_NATIVE_INT, 1, &four);
|
|
if((dt = H5Tcreate(H5T_COMPOUND, sizeof(dst_type_t))) < 0 ||
|
|
H5Tinsert(dt, "a", HOFFSET(dst_type_t, a), H5T_NATIVE_INT) < 0 ||
|
|
H5Tinsert(dt, "c", HOFFSET(dst_type_t, c), array_dt) < 0 ||
|
|
H5Tinsert(dt, "e", HOFFSET(dst_type_t, e), H5T_NATIVE_INT) < 0)
|
|
goto error;
|
|
|
|
if(H5Tclose(array_dt) < 0)
|
|
goto error;
|
|
|
|
/*
|
|
* Create a new dataset within the file using cparms
|
|
* creation properties.
|
|
*/
|
|
if((dataset = H5Dcreate2(file, DATASETNAME4, st, dataspace, H5P_DEFAULT,
|
|
cparms, H5P_DEFAULT)) < 0)
|
|
goto error;
|
|
|
|
if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0)
|
|
goto error;
|
|
|
|
/* Initialize data for one chunk */
|
|
for(i = n = 0; i < CHUNK_NX; i++) {
|
|
for(j = 0; j < CHUNK_NY; j++) {
|
|
(direct_buf[i][j]).a = i*j+0;
|
|
(direct_buf[i][j]).b = i*j+1;
|
|
(direct_buf[i][j]).c[0] = i*j+2;
|
|
(direct_buf[i][j]).c[1] = i*j+3;
|
|
(direct_buf[i][j]).c[2] = i*j+4;
|
|
(direct_buf[i][j]).c[3] = i*j+5;
|
|
(direct_buf[i][j]).d = i*j+6;
|
|
(direct_buf[i][j]).e = i*j+7;
|
|
}
|
|
}
|
|
|
|
/* write the chunk data to dataset, using the direct writing function.
|
|
* There should be no data conversion involved. */
|
|
offset[0] = CHUNK_NX;
|
|
offset[1] = CHUNK_NY;
|
|
|
|
if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) < 0)
|
|
goto error;
|
|
|
|
if(H5Fflush(dataset, H5F_SCOPE_LOCAL) < 0)
|
|
goto error;
|
|
|
|
if(H5Dclose(dataset) < 0)
|
|
goto error;
|
|
|
|
if((dataset = H5Dopen2(file, DATASETNAME4, H5P_DEFAULT)) < 0)
|
|
goto error;
|
|
|
|
/*
|
|
* Select hyperslab for the chunk just written in the file
|
|
*/
|
|
start[0] = CHUNK_NX; start[1] = CHUNK_NY;
|
|
stride[0] = 1; stride[1] = 1;
|
|
count[0] = 1; count[1] = 1;
|
|
block[0] = CHUNK_NX; block[1] = CHUNK_NY;
|
|
if((status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, start, stride, count, block)) < 0)
|
|
goto error;
|
|
|
|
/* Read the chunk back. Data should be converted */
|
|
if((status = H5Dread(dataset, dt, mem_space, dataspace, H5P_DEFAULT, check_chunk)) < 0)
|
|
goto error;
|
|
|
|
/* Check that the values read are the same as the values written */
|
|
for(i = 0; i < CHUNK_NX; i++) {
|
|
for(j = 0; j < CHUNK_NY; j++) {
|
|
if ((direct_buf[i][j]).a != (check_chunk[i][j]).a ||
|
|
(direct_buf[i][j]).c[0] != (check_chunk[i][j]).c[0] ||
|
|
(direct_buf[i][j]).c[1] != (check_chunk[i][j]).c[1] ||
|
|
(direct_buf[i][j]).c[2] != (check_chunk[i][j]).c[2] ||
|
|
(direct_buf[i][j]).c[3] != (check_chunk[i][j]).c[3] ||
|
|
(direct_buf[i][j]).e != (check_chunk[i][j]).e) {
|
|
printf(" 1. Read different values than written.");
|
|
printf(" At index %d,%d\n", i, j);
|
|
printf(" src={a=%d, b=%d, c=[%d,%d,%d,%d], d=%d, e=%d\n",
|
|
(direct_buf[i][j]).a, (direct_buf[i][j]).b, (direct_buf[i][j]).c[0], (direct_buf[i][j]).c[1],
|
|
(direct_buf[i][j]).c[2], (direct_buf[i][j]).c[3], (direct_buf[i][j]).d, (direct_buf[i][j]).e);
|
|
printf(" dst={a=%d, c=[%d,%d,%d,%d], e=%d\n",
|
|
(check_chunk[i][j]).a, (check_chunk[i][j]).c[0], (check_chunk[i][j]).c[1], (check_chunk[i][j]).c[2],
|
|
(check_chunk[i][j]).c[3], (check_chunk[i][j]).e);
|
|
|
|
goto error;
|
|
}
|
|
}
|
|
}
|
|
|
|
/*
|
|
* Close/release resources.
|
|
*/
|
|
H5Dclose(dataset);
|
|
H5Sclose(mem_space);
|
|
H5Sclose(dataspace);
|
|
H5Pclose(cparms);
|
|
H5Pclose(dxpl);
|
|
H5Tclose(st);
|
|
H5Tclose(dt);
|
|
|
|
|
|
PASSED();
|
|
return 0;
|
|
|
|
error:
|
|
H5E_BEGIN_TRY {
|
|
H5Dclose(dataset);
|
|
H5Sclose(mem_space);
|
|
H5Sclose(dataspace);
|
|
H5Pclose(cparms);
|
|
H5Pclose(dxpl);
|
|
H5Tclose(st);
|
|
H5Tclose(dt);
|
|
} H5E_END_TRY;
|
|
|
|
return 1;
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: test_invalid_parameters
|
|
*
|
|
* Purpose: Test invalid parameters for H5DOwrite_chunk
|
|
*
|
|
* Return: Success: 0
|
|
*
|
|
* Failure: 1
|
|
*
|
|
* Programmer: Raymond Lu
|
|
* 30 November 2012
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static int
|
|
test_invalid_parameters(hid_t file)
|
|
{
|
|
hid_t dataspace = -1, dataset = -1;
|
|
hid_t mem_space = -1;
|
|
hid_t cparms = -1, dxpl = -1;
|
|
hsize_t dims[2] = {NX, NY};
|
|
hsize_t chunk_dims[2] ={CHUNK_NX, CHUNK_NY};
|
|
herr_t status;
|
|
int i, j, n;
|
|
|
|
unsigned filter_mask = 0;
|
|
int direct_buf[CHUNK_NX][CHUNK_NY];
|
|
hsize_t offset[2] = {0, 0};
|
|
size_t buf_size = CHUNK_NX*CHUNK_NY*sizeof(int);
|
|
int aggression = 9; /* Compression aggression setting */
|
|
|
|
TESTING("invalid parameters for H5DOwrite_chunk");
|
|
|
|
/*
|
|
* Create the data space with unlimited dimensions.
|
|
*/
|
|
if((dataspace = H5Screate_simple(RANK, dims, NULL)) < 0)
|
|
goto error;
|
|
|
|
if((mem_space = H5Screate_simple(RANK, chunk_dims, NULL)) < 0)
|
|
goto error;
|
|
|
|
/*
|
|
* Modify dataset creation properties
|
|
*/
|
|
if((cparms = H5Pcreate(H5P_DATASET_CREATE)) < 0)
|
|
goto error;
|
|
|
|
/*
|
|
* Create a new contiguous dataset to verify H5DOwrite_chunk doesn't work
|
|
*/
|
|
if((dataset = H5Dcreate2(file, DATASETNAME5, H5T_NATIVE_INT, dataspace, H5P_DEFAULT,
|
|
cparms, H5P_DEFAULT)) < 0)
|
|
goto error;
|
|
|
|
if((dxpl = H5Pcreate(H5P_DATASET_XFER)) < 0)
|
|
goto error;
|
|
|
|
/* Initialize data for one chunk */
|
|
for(i = n = 0; i < CHUNK_NX; i++)
|
|
for(j = 0; j < CHUNK_NY; j++) {
|
|
direct_buf[i][j] = n++;
|
|
}
|
|
|
|
/* Try to write the chunk data to contiguous dataset. It should fail */
|
|
offset[0] = CHUNK_NX;
|
|
offset[1] = CHUNK_NY;
|
|
|
|
H5E_BEGIN_TRY {
|
|
if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL)
|
|
goto error;
|
|
} H5E_END_TRY;
|
|
|
|
if(H5Dclose(dataset) < 0)
|
|
goto error;
|
|
|
|
/* Create a chunked dataset with compression filter */
|
|
if((status = H5Pset_chunk( cparms, RANK, chunk_dims)) < 0)
|
|
goto error;
|
|
|
|
if((status = H5Pset_deflate( cparms, (unsigned ) aggression)) < 0)
|
|
goto error;
|
|
|
|
/*
|
|
* Create a new dataset within the file using cparms
|
|
* creation properties.
|
|
*/
|
|
if((dataset = H5Dcreate2(file, DATASETNAME6, H5T_NATIVE_INT, dataspace, H5P_DEFAULT,
|
|
cparms, H5P_DEFAULT)) < 0)
|
|
goto error;
|
|
|
|
/* Check invalid dataset ID */
|
|
H5E_BEGIN_TRY {
|
|
if((status = H5DOwrite_chunk((hid_t)-1, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL)
|
|
goto error;
|
|
} H5E_END_TRY;
|
|
|
|
/* Check invalid DXPL ID */
|
|
H5E_BEGIN_TRY {
|
|
if((status = H5DOwrite_chunk(dataset, (hid_t)-1, filter_mask, offset, buf_size, direct_buf)) != FAIL)
|
|
goto error;
|
|
} H5E_END_TRY;
|
|
|
|
/* Check invalid OFFSET */
|
|
H5E_BEGIN_TRY {
|
|
if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, NULL, buf_size, direct_buf)) != FAIL)
|
|
goto error;
|
|
} H5E_END_TRY;
|
|
|
|
/* Check when OFFSET is out of dataset range */
|
|
offset[0] = NX + 1;
|
|
offset[1] = NY;
|
|
H5E_BEGIN_TRY {
|
|
if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL)
|
|
goto error;
|
|
} H5E_END_TRY;
|
|
|
|
/* Check when OFFSET is not on chunk boundary */
|
|
offset[0] = CHUNK_NX;
|
|
offset[1] = CHUNK_NY + 1;
|
|
H5E_BEGIN_TRY {
|
|
if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL)
|
|
goto error;
|
|
} H5E_END_TRY;
|
|
|
|
/* Check invalid buffer size */
|
|
offset[0] = CHUNK_NX;
|
|
offset[1] = CHUNK_NY;
|
|
buf_size = 0;
|
|
H5E_BEGIN_TRY {
|
|
if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, direct_buf)) != FAIL)
|
|
goto error;
|
|
} H5E_END_TRY;
|
|
|
|
/* Check invalid data buffer */
|
|
buf_size = CHUNK_NX*CHUNK_NY*sizeof(int);
|
|
H5E_BEGIN_TRY {
|
|
if((status = H5DOwrite_chunk(dataset, dxpl, filter_mask, offset, buf_size, NULL)) != FAIL)
|
|
goto error;
|
|
} H5E_END_TRY;
|
|
|
|
if(H5Dclose(dataset) < 0)
|
|
goto error;
|
|
|
|
/*
|
|
* Close/release resources.
|
|
*/
|
|
H5Sclose(mem_space);
|
|
H5Sclose(dataspace);
|
|
H5Pclose(cparms);
|
|
H5Pclose(dxpl);
|
|
|
|
PASSED();
|
|
return 0;
|
|
|
|
error:
|
|
H5E_BEGIN_TRY {
|
|
H5Dclose(dataset);
|
|
H5Sclose(mem_space);
|
|
H5Sclose(dataspace);
|
|
H5Pclose(cparms);
|
|
H5Pclose(dxpl);
|
|
} H5E_END_TRY;
|
|
|
|
return 1;
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: Main function
|
|
*
|
|
* Purpose: Test direct chunk write function H5DOwrite_chunk
|
|
*
|
|
* Return: Success: 0
|
|
*
|
|
* Failure: 1
|
|
*
|
|
* Programmer: Raymond Lu
|
|
* 30 November 2012
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
int main( void )
|
|
{
|
|
hid_t file_id;
|
|
int nerrors=0;
|
|
|
|
/*
|
|
* Create a new file. If file exists its contents will be overwritten.
|
|
*/
|
|
if((file_id = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
|
|
goto error;
|
|
|
|
/* Test direct chunk write */
|
|
#ifdef H5_HAVE_FILTER_DEFLATE
|
|
nerrors += test_direct_chunk_write(file_id);
|
|
#endif /* H5_HAVE_FILTER_DEFLATE */
|
|
nerrors += test_skip_compress_write1(file_id);
|
|
nerrors += test_skip_compress_write2(file_id);
|
|
nerrors += test_data_conv(file_id);
|
|
nerrors += test_invalid_parameters(file_id);
|
|
|
|
if(H5Fclose(file_id) < 0)
|
|
goto error;
|
|
|
|
/* check for errors */
|
|
if (nerrors)
|
|
goto error;
|
|
|
|
return 0;
|
|
|
|
error:
|
|
return 1;
|
|
}
|