hdf5/test/onion.c
jhendersonHDF ea3f926057
1.14 sync with develop (#3660)
* Rework tools.cmake and add C flags (#3110)

* Fix gh pages so that the doxygen files are uploaded (#3102)

* Add workspace path
* add debug
* Make one job so workspace files are available
* Put doxygen docs under docs folder in gh-pages

* Fix a misc warning in test/vol.c (#3112)

The compiler complains about using integers instead of size_t
for some sizes.

* Remove H5detect and H5make_libsettings (#3104)

Removes H5detect and H5make_libsettings from the build and replaces
their functionality with things that don't affect cross-compiling.

H5detect --> floating-point types are now detected on library load
H5make_libsettings --> Moved functionality to a new H5build_settings.c template file

* clang-tidy clang-analyzer-core issues addressed (#3113)

src/H5system.c:1293:13: warning: Dereference of null pointer
[clang-analyzer-core.NullDereference]
src/H5trace.c:4048:17: warning: Passed-by-value struct argument contains
uninitialized data (e.g., via the field chain: 'initial.user')
[clang-analyzer-core.CallAndMessage]

* Add note for issue 3056 (#3117)

* Use 1.14 toolchain (#3116)

* Remove the checkposix script (#3122)

This script was used to ensure that all non-HDF5 calls were prefixed
with 'HD'. We are removing this scheme so this script is no longer
needed.

* Remove unused HD macros (#3120)

* Remove unused HD macros
The library prefixes most C and POSIX API calls with 'HD'. We are
going to start removing these so the code looks like normal C.

This PR removes most of the unused HD markup macros.

* Replace ntohl/ntohs

* Adds an optional version arg to bin/format_source (#3119)

* Clean up mirror VFD code in utils dir (#3121)

* Remove dead code
* Replace mybzero with memset
* Replace hbool_t/TRUE/FALSE with bool/true/false

* Fix spelling issues flagged by codespell (#3130)

* Make autogen.sh output message consistent (#3128)

* Add Python for HDF-EOS zoo description (#3129)

* Fix function name in comment in ros3 VFD (#3131)

* Revert long double checks (#3133)

* Revert "Remove long double conversion work-arounds (#3097)"

This reverts commit 1e1dac1dac.

* Update comments to reflect newer systems

* Add java options to build scripts (#3127)

* Add java options to build scripts

Previously, cmakehdf5 turned on compiling of the java interface
by default due to a value set in cacheinit.cmake.

Now, consistent with how Fortran and CPP interfaces are handled,
the script overwrites this default value to disable the libraries,
fixing #2958.

I also implemented the --enable-java/--disable java options for
cmakehdf5, and -java for buildhdf5.

Allen said these scripts should mention that
compilers are to be specified in environment variables, but missing
compilers causes errors at the CMake level, and
CMake's error messages are already pretty informative (See the one
in #2958 about JAVA_COMPILER).

* Removed .lnt linter files (#3143)

These were last usefully modified in 2004

* Fix path to libhdf5.settings in cmakehdf5 (#3140)

* Many clang -Wextra-semi-stmt fixes (#2537)

* Adds semicolons to function-like macros
* Adds a do..while(0) loop to some macros
* Removes semicolons when inappropriate, especially H5E_TRY_BEGIN/END

* Remove HD prefix from network calls (#3142)

HDsocket(), etc. Only affects the mirror VFD and its test code.

* Remove hbool_t/TRUE/FALSE from java (#3145)

Replaces with bool/true/false

* CMake: (feature) ROS3 and cmake config file. (#3146)

- Added a cmake variable to the hdf5-config.cmake file which
  indicate if the library has been build with or without the
  read-only S3 functionality.

* Define minimal permissions for new GitHub workflows (#3147)

* Track s3 i/o when S3COMMS_DEBUG enabled (#3139)

* Track s3 i/o when S3COMMS_DEBUG enabled

* Fix the snapshots workflow (#3148)

* Add upload url as artifact
* Change doxygen path and comment log-url upload
* zip doxygen files for upload
* add workspace var

* chore: fix grammar (#3150)

* chore: fix grammar

* Removes the HD prefix from java C99 calls (#3149)

POSIX calls (HDstrndup, etc.) are unchanged

* Correct the zip usage (#3153)

* Many fixes to various compiler warnings (#3124)

* Fixed various -Wmissing-variable-declarations by adding static keyword
* In a few cases, renamed the variable suffix from _g to _s.
* Fixed some -Wmissing-variable-declarations by using different declaration macros
* Fixed various -Wconditional-uninitialized warnings by just initializing variable to zero
* Fixed various -Wcomma warnings
* Fixed clang -Wstrict-prototypes warnings
* Fixed various -Wunused-variable warnings
* Updated some casts to fix the only 3 -Wcast-qual warnings
* Fixed the only -Wsometimes-uninitialized warning

* Create Security Policy (#3152)

* Fix #1978 h5vers usage message. (#3162)

Update Platforms Tested in RELEASE.txt.

* speed-up building HDF5 (#3087)

Disables building the tests when building the netCDF, etc.

* Remove dead code behind #ifdef OLD_WAY (#3163)

* Remove H5F_evict_tagged_metadata() (#3165)

The rest of the library just calls H5AC_evict_tagged_metadata()
directly.

* Add missing space in zip command (#3167)

* Fixed check for a VOL's async compatibility  (#3164)

* cap flag fix in test

* added async comp. output

* Update Linux workflows (#3173)

* Consolidate environment setup
* Turn on ros3 VFD in CMake (Linux only)

* Add gh-pages doxygen link (#3175)

* Fix the doxygen to gh pages and artifact creation (#3176)

* Tidy the list of options in main.yml (#3181)

* Remove HD/hbool_t from fortran (#3182)

* Remove HD/hbool_t from high-level lib (#3183)

* Remove HDva_(arg|copy|end|start) (#3184)

* Drop HD prefix & hbool_t from H5TS (#3180)

* Remove HD from fork/exec*/wait* (#3190)

These are not C99 but are hidden behind ifdefs and are highly
unlikely to ever have non-POSIX equivalents.

* Fix assertion failure when attempting to use IOC VFD directly (#3187)

* Rename HDqsort() to qsort() (#3193)

* Rename HDqsort() to qsort()

* Committing clang-format changes

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Rename HDpipe() to pipe() (#3192)

Pipe is POSIX but implemented in Microsoft's CRT

* Rename HDassert() to assert() (#3191)

* Change HDassert to assert

* Fix bin/make_err

* Rename HD(f)printf() to (f)printf() (#3194)

* Add note about HDF5_VOL_CONNECTOR to tools usage (#3159)

* Rename HDsystem() to system() (#3197)

system() is only used in the iopipe test and the things it calls
(which are POSIX-y) are protected by an ifdef.

* Remove HD from HDposix_memalign() (#3196)

The posix_memalign call is only used in the direct VFD, which can only
be built if posix_memalign() is available.

* Remove HD from memory allocate/free calls (#3195)

* HDcalloc
* HDfree
* HDmalloc
* HDrealloc

* chore: fix grammar (#3207)

* docs: remove redundancy in Data Transfer section of user guide (#3208)

* Remove checks for setsysinfo, which is unused (#3205)

* Autotools
* CMake

* Remove HD from protected POSIX calls (#3203)

These calls are non-C99 but protected by ifdefs and have no Windows
equivalents:
* HDalarm
* HDasprintf
* HDclock_gettime
* HDfcntl
* HDgethostname
* HDgetrusage
* HDsymlink

* Rename HDato*() to ato*() (#3201)

* Remove some "Programmer" comments (#3209)

These are meaningless noise.

Removes the "Programmer" lines on comment start lines:

    /* Programmer: John Smith

These complicate my sed script that will rip out the rest of
the comments.

* Rename HDexit() and related to exit(), etc. (#3202)

* HDatexit
* HDexit
* HD_exit

* Remove HD from strto* calls (#3204)

* HDstrtod
* HDstrtol
* HDstrtoll
* HDstrtoul
* HDstrtoull
* HDstrtoumax

* Remove HD from C std lib file ops (#3206)

* HDfclose
* HDferror
* HDfeof
* HDfflush
* HDfopen
* HDfread
* HDfwrite

* Remove programmer/date from comments (#3210)

* Removes Programmer: and Date: fields
* Fixes a few Modifications: fields leftover from previous work

* Remove HD from HDmem* calls (#3211)

* Remove HD from HDis* (e.g., isalpha) (#3212)

* HDisalnum
* HDisalpha
* HDiscntrl
* HDisdigit
* HDisgraph
* HDislower
* HDisprint
* HDispunct
* HDisspace
* HDisupper
* HDisxdigit

* Update actions for release option, fix branch for daily build (#3185)

* Update actions for release option, fix branch for daily build

* Scheduled workflows run on latest commit on the develop

* Add snapshots location

* docs: improve consistency in verb form (#3076) (#3188)

* fix gh action if statements (#3213)

* Adjust presets timeout and fix build script VS versions (#3215)

* Several ros3vfd logging improvements

* Committing clang-format changes

* Update COPYING (#3231)

Fixed old support URL.

* addresses compilation fortran warnings on Frontier (#3236)

* Fix doc for H5allocate_memory (#3240)

* merge bbrelease to release (#3232)

* merge bbrelease to release

* Fix pre-req workflow

* Replace support.hdfgroup.org URLs for alternative COPYING file (#3228)

* Replace support.hdfgroup.org URLs for alternative COPYING file
locations in copyright headers with https://www.hdfgroup.org/licenses.
Replace  support.hdfgroup.org URL for alternative COPYING_LBNL_HDF5
with github URL.
Tweak chkcopyright script for change from UICOPYRIGHTSTR to
THGCOPYRIGHTSTR.

* Replace 1_10 reference with develop branch (#3227)

* Switch CI to use release script (#3242)

* Subfiling VFD source cleanup (#3241)

* Subfiling VFD source cleanup

Modularize Subfiling CMake code into separate CMakeLists.txt file

Update Mercury util code to latest version and update Copyright

Generate mercury_util_config.h header file instead of using
pre-generated file

Remove unnecessary Mercury functionality

Fix minor warning in Subfiling VFD code

* Remove Mercury headers from Autotools publicly-distributed header list

* install h5fuse.sh in bin dir. (#3244)

* Disable h5py until fixed properly without spack (#3243)

* ROS3: (feature) Temporary security credentials (#3030)

- Implemented support for AWS temporary security credentials.
  For this kind of credentials also a session/security token
  should be included in the request by adding the
  x-amz-security-token header.

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>
Co-authored-by: Jordan Henderson <jhenderson@hdfgroup.org>
Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Avoid truncating at null byte when copying to std::string (#3083)



---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Fix CMake builds when Subfiling VFD isn't enabled (#3250)

* Fix CMake builds when Subfiling VFD isn't enabled

* Add Subfiling VFD entry to hdf5-config.cmake.in

* Fix some warnings in developer builds (#3247)

* Fix some warnings in developer builds

* Switch approach to Winline flag

* Fixed more warnings about extra semicolons (#3249)

* Require semi-colon after H5_CHECK_OVERFLOW calls



Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Fix warning in H5C__UPDATE_STATS_FOR_DIRTY_PIN macro (#3259)

Add braces to H5C__UPDATE_STATS_FOR_DIRTY_PIN macro to fix warning
causing Werror Release builds to fail

* Update DEFAULT_API_VERSION documentation for CMake (#3255)

* Update DEFAULT_API_VERSION documentation for CMake

* Fix hint

---------

Co-authored-by: Larry Knox <lrknox@hdfgroup.org>

* changed the scope of #ifdef DOXYGEN to now include H5D multi-functions (#3254)

* Option changed but not all references (#3252)

* Option changed but not all references

* remove quotes from binary var

* Move 1.12.3 release to October (#3263)

* Fixed some -Wunused-variable warnings and one Wsometimes-uninitialized warning (#3260)

* removed the use of encoded single apostrophe (#3261)

* removed the use of encoded single apostrophe, and fix H5Dread_chunk from write to read

* updated sanitizer paragraph
* fixed brief description for H5Fget_info

* ROS3: (fix) Replaced HDfprintf (#3266)

- Replaced the HDfprintf() functions by fprintf() to be consistent
  with other parts of the library.

* chore: make VRFY output consistent (#3268)

* CMake: (fix) Threads dependency (#3267)

- If the HDF5 library has been build with either thread-safety or
  subfiling VFD feature on it will have an additional dependency
  on a threading library. This dependency has been added to the
  hdf-config.cmake.in file.

* chore: fix grammar - get hang -> get hung (#3272)

* Another round of fixing -Wextra-semi-stmt warnings (#3264)



Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* chore: fix typo - persent -> present (#3273)

* Remove py-pip from h5py action (#3265)

* Update release schedule (#3317)

* Move 1.12.3 to November
* Add 1.14.3 in October

* Update README.md w/ 1.4.3 info (#3318)

* Switch parallel compression to use vector I/O (#3245)

Updates parallel compression feature to use vector I/O instead of
creating and passing down MPI derived types to VFD

* Fix incorrect error check in H5Ofill.c for undefined fill values (#3312)

* Fix H5Otoken_to_str call in h5dump and other minor cleanup (#3314)

* Fix loading plugin fails with missing directory GH issue #3248 (#3315)

* Made HGOTO_ERROR a do-while loop (#3308)

* Made HGOTO_ERROR a do-while loop

* Update files to skip list and ignore_words_list  (#3321)

* Update files to skip list and ignore_words_list for codespell to not
check files generated by autotools.  Autotools generate misspellings
that can't be fixed in HDF5 code.

* Windows runtime items go into the bin folder (#3320)

* A couple of documentation items to fix (#3332)

* Fix h5repack for variable-length datatyped datasets (#3331)

* Fix CVE-2018-11202 (#3330)

A malformed file could result in chunk index memory leaks. Under most
conditions (i.e., when the --enable-using-memchecker option is NOT
used), this would result in a small memory leak and and infinite loop
and abort when shutting down the library. The infinite loop would be
due to the "free list" package not being able to clear its resources
so the library couldn't shut down. When the "using a memory checker"
option is used, the free lists are disabled so there is just a memory
leak with no abort on library shutdown.

The chunk index resources are now correctly cleaned up when reading
misparsed files and valgrind confirms no memory leaks.

* Fix CVE-2018-13867 (#3336)

* Fixes the last of the -Wextra-semi-stmt warnings (#3326)

* Fixed extra semi warning by adjusting alternative macro definitions

* Find-replace H5E_END_TRY; -> H5E_END_TRY

* Made H5Epush_goto a do-while loop, fixed indentation

* Made GOTOERROR and ERRMSG do-while loops

* Made Hgoto_error and Hgoto_done  do-while loops

* Made vrfy_cint_type and vrfy_ctype  do-while loops

* Made TEST_TYPE_CONTIG and others do-while loops

* Removed extraneous semi-colons

* Committing clang-format changes

---------

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Fix a typo in RELEASE.txt

* Fix assertion failure in H5D__mpio_collective_filtered_vec_io (#3340)

* Make h5dump spacing consistent when printing VLEN datatype (#3351)

* Fix for the bug exposed from running test/set_extent.c when selection… (#3319)

* Fix for the bug exposed from running test/set_extent.c when selection I/O is enabled.
This is a fix from Neil.
The test/set_extent.c is modified to test for selection I/O enabled.

* Add Fortran ES module to deploy list (#3341)

* Add Fortran ES module to deploy list

* Change fortran mod file export to use a list of names

* test(parallel): verify FALSE case (#3356)

* Implementation of the mpio driver with selection I/O. (#3222)

* This changes the default selection I/O to on for MPIO.

* Work around a testphdf5 failure on Cray MPICH machines (#3361)

* set H5_PAC_C_MAX_REAL_PRECISION default to 0 when cross sompiling with (#3364)

CMake to fix Fortran build failures.

* Add RELEASE.txt notes for recent selection I/O work. (#3374)

* Fix possible performance regression introduced with in-place type conversion in 1.14.2 (#3376)

* Correct script (#3377)

* Correct CI settings (#3384)

* Correct CI settings

* Correct plugin file name

* restore CI tarball name prefix to match bin/release (#3385)

* Fix assertion failure during file close on error (#3387)

* Fix compile failures with H5C_DO_MEMORY_SANITY_CHECKS enabled (#3388)

* Fix valgrind warning about write of uninitialized bytes (#3389)

* Fix valgrind warning about write of uninitialized bytes in ScaleOffset filter (#3390)

* Update presets, examples uncompress, szip cache (#3391)

* Fix serial to parallel chunked dataset file space allocation bug (#3394)

* chore: fix typo (#3405)

* Fix for CVE-2016-4332 (#3406)

This CVE issue was previously listed as fixed (via HDFFV-9950) back in
2016, but with no confirmation test. Now that test files exist for
the 2016 Talos CVE issues, we found that CVE-2016-4332 can raise an
assert in debug builds.

This fix replaces the assert with pointer checks that don't raise
errors or asserts. Since the function is in cleanup code, we do our
best to close and free things, even when presented with partially-
initialized structs.

Fixes CVE-2016-4332 and HDFFV-9950 (confirmed via the cve_hdf5 repo)

* Fix ph5diff tests for MPIEXEC_MAX_NUMPROCS=1 (#3407)

* Enable szip by default in Autotools (#3412)

Since libaec is so prevalent and BSD-licensed for both encode and
decode, we build the szip filter by default when the szip or aec
libraries are found.

* Re-enable SZIP default to ON in CMake (#3414)

The Autotools were handled in a separate commit

* Fix Heap-buffer-overflow WRITE in H5MM_memcpy (#3368)

* Add Intel oneAPI actions (#2949) (#2977)

* ci: add Intel oneAPI actions (#2949)

* ci: fix CMake installation

* ci: use absolute paths for libtool installation

* ci(oneAPI): update compiler versions and use cron

* Add RELEASE.txt entry for compound performance regression fix (#3376) (#3416)

* chore: remove gubbins comment (#3420)

* Add other types and full type to enum/str/vlen dataformat for structblock[begin/end] (#3353)

* Avoid H5Ocopy in h5repack for variable-length string types (#3419)

* Skip atomicity tests for OpenMPI major versions < 5 (#3421)

* Fix an issue with use of uninitialized memory in trefer_deprec.c test (#3422)

* Add parallel examples in doxygen (#3413)

* Fix use of uninitialized value in testpar/t_dset.c test (#3423)

* Remove extraneous "33" in RELEASE.txt (#3425)

* Revise file close assertion failure fix (#3418)

* Remove intel oneapi warning (#3426)

* Fix for CVE-2018-15671.  h5stat -S $POC will result in a crash with segmenetation fault. (#3427)

It is because the object in the testfile points back to the root group.
When the tool tries to traverse the object, it goes back to the root group and then back again.

* chore: match function call and VRFY() output (#3428)

* Fix the Fortran extension used in example links (#3430)

* Put H5T_CONV_ab macros in do..while loops (#3432)

Ever since a recent round of macro cleanup, bin/trace and clang-format
have been bickering over what H5Tconv.c should look like and neither
produces readable code.

This change puts the top-level H5T_CONV_ab macros in do..while loops,
adds appropriate semicolons, and adds the missing H5_CLANG_DIAG_ON|OFF
and H5_GCC_CLANG_DIAG_ON|OFF macros to the list of statement macros
clang-format recognizes. H5Tconv.c is now readable and both bin/trace
and clang-format are happy.

* Convert some H5MM calls to standard C equivalents (#2382)

* H5MM_calloc and malloc are now mapped to stdlib C calls
* H5MM_memcpy now maps directly to memcpy in release builds
* H5MM_memcpy is still implemented as a separate function that
   checks for buffer overlap when H5MM_DEBUG is defined
   (default w/ debug builds)
* Switches many library memcpy calls to use H5MM_memcpy
* Fixes a possible zero allocation in H5Olayout.c

* Add 1.14.4 to the release schedule (#3434)

* Output stderr file in CMake testing on failure (#3431)

* Add Intel oneAPI badges (#3433)

* Add a CVE regression test action (#3445)

*

* Disable SZIP for Intel oneAPI Action (#3449)

* Disable SZIP for Intel oneAPI Action

* Disable Fortran and parallel

* Update VOL CMake for REST VOL (#3450)

* Update VOL CMake for REST VOL

* Prevent linking static libs to VOLs

* Add an h5py badge to README.md (#3477)

* Removed all the ranks printing out testing information (#3457)

* Fix Subfiling VFD IOC assignment bug (#3456)

* Correct java test dimension (#3482)

* Support CMake VOL builds with FetchContent from local directory (#3455)

* Update VOL CMake for REST VOL

* Prevent linking static libs to VOLs

* index on fetch_local: 5c5c3f1505 Prevent linking static libs to VOLs

* index on (no branch): 9a36d3e7b1 On fetch_local: WIP:add source dir fetch option for vols

* Allow building of VOL from local source

* Move LOCAL_DIR option to HDF5_VOL_ALLOW_EXTERNAL

* Fix the Fortran include dir in install config files (#3454)

* Convert hbool_t --> bool in examples (#3492)

* Fix some minor formatting for consistency (#3499)

* Create scorecard.yml (#3508)

Bring in OSSF Scorecard code scanner as a GitHub action

* Convert hbool_t --> bool in testpar (#3495)

* hbool_t/TRUE/FALSE --> bool/true/false in tools (#3491)

* Convert hbool_t --> bool in test (#3494)

* Convert hbool_t --> bool in src (#3496)

* hbool_t --> bool in src

* Does not remove TRUE/FALSE
* Public header files are unchanged
* Public API calls are unchanged

* TRUE/FALSE --> true/false in src

* Add deprecation notice for hbool_t

* Added new Fortran API wrappers (#3511)

* Added new wrappers for
h5get_free_list_sizes_f
H5Sselect_intersect_block_f
H5Sselect_shape_same_f
h5pget_no_selection_io_cause_f
h5pget_mpio_no_collective_cause_f
H5Lvisit_by_name_f
H5Lvisit_f
H5Fget_info_f
h5dwrite_chunk_f
h5dread_chunk_f

* added h5pget_file_space_page_size_f, h5pset_file_space_page_size_f, h5pget_file_space_strategy_f, h5pset_file_space_strategy_f, h5info tests

* added fortran tests

* Update tH5F.F90

* misc. fortran fixes for failing CI dailty tests (#3523)

* fixed H5Lvisit* interface

* changed integer type for direct write

* Consistent initialization of hid_t in the tests (#3521)

* Fix windows cpack with debug (#3525)

* Add missing row for the ROS3 VFD in table #3415 (#3517)

* fixed nvidia compiler issue (#3527)

* Identify functions in a subgroup (#3530)

* quiet warning on sunspot (gcc 11.2.0) (#3534)

* Add API examples doxygen page (#3500)

* removed C_INT32_T from Fortran APIs (#3537)

* Add NVHPC 23.7 GitHub Actions (#3509)

* Add NVHPC 27.3 GitHub Actions

* Address @derobins review

* Remove HD prefix from math functions (#3538)

* Remove HD prefix from HDlog10 calls (#3539)

Was missed in a previous commit and causes building subfiling to
fail.

* fixed arg to C H5Dwrite_chunk (#3541)

* Strip HD prefix from string/char C API calls (#3540)

* Strip HD prefix from string/char C API calls

* HD(f)(put|get)(s|c)
* HDstr*
* HDv*printf
* HD(s)(print|scan)f
* HDperror

But NOT:

* HDstrcase*
* HDvasprintf
* HDstrtok_r
* HDstrndup

As those are not C99 and have portability work-around
implementations. They will be handled later.

* Fix th5_system.c screwup

* Convert main.yml CI into callable workflows (#3529)

* Fix broken URL. (#3546)

* Fix grammar (#3545)

* Update oneAPI-C/A badge yml links. (#3564)

* Check return values from HDF5 API calls. (#3556)

* Adds link to h5fuse.sh in testpar for autotools (#3557)

* Make the h5fuse.sh utility available to parallel subfiling tests so h5fuse testing is not skipped.

* Some minor formatting and text changes (#3563)

* Fix typos and grammar in t_pread. (#3565)

* Fix typo (givin->given) in test/testframe.c. (#3567)

* Fix ifx unused variable hdferr warning. (#3568)

* Correct comments about H5Z_FILTER_NONE (#3572)

* Update release script. (#3577)

* fixed function declaration (#3579)

* Fixed GH-3554 (#3584)

Removed the extra condition

* Remove h5dwalk.1 man page. (#3589)

* Removed the use of -commons linking option on Darwin (#3581)

Removed the use of -commons linking option on Darwin as COMMON and EQUIVALENCE is no long used

* Fix docs for H5Pset_dxpl_mpio_collective_opt() (#3594)

* Fix typo: arange->arrange in src/H5Cmpio.c. (#3597)

* Fix docs for H5Acreate2 and H5Acreate_by_name (#3598)

* Use HDoff_t with lseek consistently (#3600)

lseek on Windows uses __int64 for both the offset and return type
instead of off_t like most POSIX systems. This changes ensures we
use HDoff_t (which is typdef'd correctly on Windows) w/ lseek.

* Replaces HDgetenv with getenv (#3599)

* Develop tools move (#3580)

Reorganizes the tools files to support the VOL tests

* Clean up Subfiling VFD header doxygen formatting (#3601)

* Remove `sh` to run bash script. (#3590)

* Correct path name of ddl file to be changed (#3607)

* Fix potential uninitialized variable (#3602)

Moves a union initialization up a bit so it's performed before code
that can jump to the cleanup target, where file descriptors could
be checked without being initialized.

This could only happen in test code and only in an out-of-memory
situation.

Fixes Coverity 1542254

* Remove unnecessary assignment in test generator (#3603)

Fixes what looks like a copy/paste/modify error in the format convert
test file generator, where an array element is assigned one value
and them immediately overwritten by another value.

Fixes Coverity issue 1542285

* Remove useless define TRUE/FALSE statements. (#3604)

* Fix typo behaviour and dependes. (#3605)

* Fix typos (#3609)

* Fixed unused variable in H5CS.c (#3552) (#3612)

* Fixed #3552

* Fix grammar (#3614)

* Cleanup unused statements (#3553) (#3617)

Removed unnecessary assert statements and noise comments.

* Fix Intel oneAPI icc warning (#3619)

* Fix several spelling/grammar issues (#3621)

* Add HPC CDash to README.md (#3623)

* Disable static + thread-safe on Windows w/ CMake (#3622)

The thread-safety feature on Windows requires a hook in DllMain() and
thus is only available when HDF5 is built as a shared library.

This was previously a warning, but has now been elevated to a fatal
error that cannot be overridden with ALLOW_UNSUPPORTED.

Fixes GitHub #3613

* Remove unused member from H5D_shared_t struct. (#3628)

* Remove old EXTERNALPROJECT_ADD in favor of FETCH_CONTENT (#3624)

* Fix grammar (#3635)

* Disambiguate error output messages. (#3634)

* Disambiguate error output messages.

* Address @brtnfld review.

* Fail CMake on Windows when sub-filing VFD is enabled (#3636)

* Improve consistency in past tense usage (#3638)

* Split out test logic to separate file (#3639)

* Drop MPI-2 support (#3643)

* Switch IEEE flags for NAG Fortran (#3644)

Default is -ieee=stop, which causes problems when the H5T
module performs floating-point type introspection.

The new mode is -ieee=full

* Remove 1.10.11 info from README.md (#3646)

* Fixes GH#1027 compilation error (#3654)

* Remove 1.10 badge (#3650)

* Use real URLs and updated names for plugins (#3651)

* synchronize TGZ naming convention/usage

* Update parallel compression feature to support multi-dataset I/O (#3591)

* Add more tests for selection I/O. (#3528)

* Adjust 1.14 files after merging

---------
2023-10-12 11:32:23 -05:00

4967 lines
158 KiB
C

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* Onion Virtual File Driver (VFD)
*
* Purpose:
*
* Verify Onion VFD behavior that is not involved with operations on the
* backing store.
*/
#include "h5test.h"
#include "H5Fprivate.h" /* encode/decode macros */
#include "H5FDonion.h" /* This file driver's utilities */
#include "H5FDonion_priv.h" /* Onion file driver internals */
/* The Onion VFD uses H5MM calls internally, so any tests that allocate
* or free memory for said internal structures (e.g., the revision lists)
* will need to allocate memory using H5MM calls.
*/
#include "H5MMprivate.h" /* Memory management */
/* 2^n for uint64_t types -- H5_EXP2 unsafe past 32 bits */
#define U64_EXP2(n) ((uint64_t)1 << (n))
#define ONION_TEST_PAGE_SIZE_1 4
#define ONION_TEST_PAGE_SIZE_5 32
#define ONION_TEST_FIXNAME_SIZE 1024
#define ONION_TEST_EXPECTED_HISTORY_REVISIONS_MAX 16
#define ONION_TEST_REV_REV_WRITES_MAX 8
#define ONE_DIM_SIZE 1024
/* Structure to collect the onion filepaths in one place. */
struct onion_filepaths {
char *canon;
char *onion;
char *recovery;
};
struct expected_revision {
uint64_t revision_num;
uint64_t parent_revision_num;
uint64_t logical_eof;
uint64_t n_index_entries;
const char *comment;
};
struct expected_history {
uint64_t page_size;
uint64_t n_revisions;
uint64_t origin_eof;
struct expected_revision revisions[ONION_TEST_EXPECTED_HISTORY_REVISIONS_MAX];
};
struct write_info {
haddr_t offset;
haddr_t size;
const unsigned char *buf;
};
struct revise_revision {
bool truncate; /* onion-create, truncating any existing data */
uint64_t revision_num;
size_t n_writes;
struct write_info writes[ONION_TEST_REV_REV_WRITES_MAX];
const char *comment;
};
static int compare_file_bytes_exactly(const char *filepath, hid_t fapl_id, size_t nbytes,
const unsigned char *exp);
static int do_onion_open_and_writes(const char *filename, H5FD_onion_fapl_info_t *onion_info_p, size_t n_ops,
struct revise_revision *about);
static void onion_filepaths_destroy(struct onion_filepaths *paths);
static struct onion_filepaths *onion_filepaths_init(const char *basename);
/* set at runtime in main() */
static unsigned int flags_create_s = 0;
/* NOTE: b_list must be longer than a_list.
* Sizes must match respective buffer lengths.
*/
/* twenty-six four-character words beginning with 'a' -> 104 bytes */
static const unsigned char *a_list_s =
(const unsigned char *)"abetableacedacesacheacidacneadzeafaragedagesaidsairsajarallyalum"
"amokantsapesarcsareaartsasksaspsavidaxes";
uint64_t a_list_size_s = 104;
/* fifty-three four-character words beginning with 'b' -> 212 bytes */
static const unsigned char *b_list_s =
(const unsigned char *)"badebailbaitbalebanebarebaskbeambeanbearbeenbeerbeltbentbestbide"
"bikebilebindbirdbiteblipblueboarboatbobsbodyboilboldbollboltbond"
"boneboobboorboosbootbradbragbratbraybrewbritbrowbuckbudsbunkbunt"
"buoyburnburybustbuys";
static uint64_t b_list_size_s = 212;
/* Allocate and populate filepaths with h5_fixname'd strings as appropriate.
* Should be released with onion_filepaths_destroy() when done.
*/
static struct onion_filepaths *
onion_filepaths_init(const char *basename)
{
struct onion_filepaths *paths = NULL;
if (NULL == (paths = malloc(sizeof(struct onion_filepaths))))
TEST_ERROR;
paths->canon = NULL;
paths->onion = NULL;
paths->recovery = NULL;
if (NULL == (paths->canon = malloc(sizeof(char) * ONION_TEST_FIXNAME_SIZE)))
TEST_ERROR;
snprintf(paths->canon, ONION_TEST_FIXNAME_SIZE, "%s", basename);
if (NULL == (paths->onion = malloc(sizeof(char) * ONION_TEST_FIXNAME_SIZE)))
TEST_ERROR;
snprintf(paths->onion, ONION_TEST_FIXNAME_SIZE, "%s.onion", paths->canon);
if (NULL == (paths->recovery = malloc(sizeof(char) * ONION_TEST_FIXNAME_SIZE)))
TEST_ERROR;
snprintf(paths->recovery, ONION_TEST_FIXNAME_SIZE, "%s.onion.recovery", paths->canon);
return paths;
error:
if (paths != NULL) {
free(paths->canon);
free(paths->onion);
free(paths->recovery);
}
free(paths);
return NULL;
}
/* Free onion file paths */
static void
onion_filepaths_destroy(struct onion_filepaths *paths)
{
free(paths->canon);
free(paths->onion);
free(paths->recovery);
free(paths);
}
/*-----------------------------------------------------------------------------
* Function: test_archival_index()
*
* Purpose: Unit-test mechanisms for the onion archival index.
* Specifies and verifies index-validation and -search routines.
*
* Return: PASSED : 0
* FAILED : -1
*-----------------------------------------------------------------------------
*/
static int
test_archival_index(void)
{
/* We can ignore each entry's physical address and checksum values */
H5FD_onion_index_entry_t e0 = {1, 474};
H5FD_onion_index_entry_t e1 = {4, 558};
H5FD_onion_index_entry_t e2 = {5, 306};
H5FD_onion_index_entry_t e3 = {9, 515};
H5FD_onion_index_entry_t e4 = {14, 386};
H5FD_onion_index_entry_t e5 = {18, 90};
H5FD_onion_index_entry_t e6 = {19, 94};
H5FD_onion_index_entry_t e7 = {20, 509};
H5FD_onion_index_entry_t sorted[8] = {e0, e1, e2, e3, e4, e5, e6, e7};
H5FD_onion_index_entry_t sorted_duplicates[8] = {e0, e1, e2, e2, e4, e5, e6, e7};
H5FD_onion_index_entry_t sorted_incomplete[8] = {e1, e3, e4, e5};
/* Partially-sorted list also aligned to 2 * page-size */
H5FD_onion_index_entry_t sorted_partial[8] = {e1, e4, e5, e7, e0, e6, e2, e3}; /* 0..3 sorted */
H5FD_onion_index_entry_t unsorted[8] = {e3, e1, e4, e5, e0, e6, e2, e7};
H5FD_onion_archival_index_t aix = {
H5FD_ONION_ARCHIVAL_INDEX_VERSION_CURR, 1, /* page_size_log2 */
8, /* list must be populated and sorted through 0 .. (count-1) */
sorted, /* list */
};
const H5FD_onion_index_entry_t *entry_out_p = NULL;
TESTING("archival index");
/*
* Failing validity checks
*/
/* Invalid version should fail */
aix.version++;
if (H5FD__onion_archival_index_is_valid(&aix))
TEST_ERROR;
/* Invalid version should fail */
aix.version = 0;
if (H5FD__onion_archival_index_is_valid(&aix))
TEST_ERROR;
aix.version = H5FD_ONION_ARCHIVAL_INDEX_VERSION_CURR;
/* NULL list should fail */
aix.list = NULL;
if (H5FD__onion_archival_index_is_valid(&aix))
TEST_ERROR;
/* List not full should fail */
aix.list = sorted_incomplete;
if (H5FD__onion_archival_index_is_valid(&aix))
TEST_ERROR;
/* Unsorted list should fail */
aix.list = unsorted;
if (H5FD__onion_archival_index_is_valid(&aix))
TEST_ERROR;
/* List with duplicates should fail */
aix.list = sorted_duplicates;
if (H5FD__onion_archival_index_is_valid(&aix))
TEST_ERROR;
/*
* Passing validity checks
*/
/* Sorted list should pass */
aix.list = sorted;
if (!H5FD__onion_archival_index_is_valid(&aix))
TEST_ERROR;
/* Extra elements ignored (should pass) */
aix.list = sorted_partial;
aix.n_entries = 4;
if (!H5FD__onion_archival_index_is_valid(&aix))
TEST_ERROR;
/*
* Archival index search routine
*/
aix.list = sorted;
aix.n_entries = 8;
/* Check that address not in array returns zero */
if (H5FD__onion_archival_index_find(&aix, 3, &entry_out_p) != 0)
TEST_ERROR;
/* Pointer should remain unset */
if (entry_out_p != NULL)
TEST_ERROR;
/* Address found should return 1 */
if (H5FD__onion_archival_index_find(&aix, 4, &entry_out_p) != 1)
TEST_ERROR;
/* Pointer should be set */
if (NULL == entry_out_p)
TEST_ERROR;
/* Incorrect address recorded */
if (558 != entry_out_p->phys_addr)
TEST_ERROR;
/*
* Test search edge cases
*/
aix.list = sorted_incomplete;
aix.n_entries = 4;
/* Address not in array should return 0 */
if (H5FD__onion_archival_index_find(&aix, 1, &entry_out_p) != 0)
TEST_ERROR;
/* Address not in array should return 0 */
if (H5FD__onion_archival_index_find(&aix, 101, &entry_out_p) != 0)
TEST_ERROR;
/*
* Empty archival index
*/
entry_out_p = NULL;
aix.n_entries = 0; /* actually populated list is irrelevant */
/* Address not in array should return 0 */
if (H5FD__onion_archival_index_find(&aix, 3, &entry_out_p) != 0)
TEST_ERROR;
/* Pointer should remain unset */
if (entry_out_p != NULL)
TEST_ERROR;
PASSED();
return 0;
error:
return -1;
} /* end test_archival_index() */
/*-----------------------------------------------------------------------------
* Function: test_revision_index()
*
* Purpose: Test revision index functionality
*
* Return: PASSED : 0
* FAILED : -1
*-----------------------------------------------------------------------------
*/
static int
test_revision_index(void)
{
H5FD_onion_revision_index_t *rix_p = NULL;
H5FD_onion_index_entry_t entry = {
42, /* logical_page */
111112, /* phys_addr */
};
const H5FD_onion_index_entry_t *entry_out_p = NULL;
TESTING("revision index");
/* Test index creation */
if (NULL == (rix_p = H5FD__onion_revision_index_init(ONION_TEST_PAGE_SIZE_5)))
TEST_ERROR;
if (H5FD_ONION_REVISION_INDEX_VERSION_CURR != rix_p->version)
TEST_ERROR;
if (0 != rix_p->n_entries)
TEST_ERROR;
/* Test missed search */
if (H5FD__onion_revision_index_find(rix_p, entry.logical_page, &entry_out_p) != 0)
TEST_ERROR;
/* Test successful insertion and lookup */
/* Insertion failed */
if (H5FD__onion_revision_index_insert(rix_p, &entry) < 0)
TEST_ERROR;
if (1 != rix_p->n_entries)
TEST_ERROR;
/* Lookup failed */
if (H5FD__onion_revision_index_find(rix_p, entry.logical_page, &entry_out_p) < 0)
TEST_ERROR;
/* Failure to set output parameter */
if (NULL == entry_out_p)
TEST_ERROR;
if (entry.logical_page != entry_out_p->logical_page)
TEST_ERROR;
/* Seeking missing page should miss */
if (H5FD__onion_revision_index_find(rix_p, entry.logical_page + 1, &entry_out_p) != 0)
TEST_ERROR;
/* Test / demonstrate stored entry independent of user object */
entry.logical_page = 100;
entry.phys_addr = 101;
if (H5FD__onion_revision_index_insert(rix_p, &entry) < 0)
TEST_ERROR;
if (2 != rix_p->n_entries)
TEST_ERROR;
entry.logical_page = 500;
entry.phys_addr = 501;
if (H5FD__onion_revision_index_find(rix_p, 100, &entry_out_p) < 0)
TEST_ERROR;
if (100 != entry_out_p->logical_page || 101 != entry_out_p->phys_addr)
TEST_ERROR;
/* Demonstrate updating an entry */
/* Error cases */
entry.logical_page = 100; /* phys_addr still 501, checksum bbbbbbbb */
if (H5FD__onion_revision_index_insert(rix_p, &entry) >= 0)
TEST_ERROR; /* all components but sum must match */
entry.phys_addr = 101;
/* Successful update */
entry.logical_page = 100;
entry.phys_addr = 101;
if (H5FD__onion_revision_index_insert(rix_p, &entry) < 0)
TEST_ERROR;
/* Should still be two unique entries, not three */
if (2 != rix_p->n_entries)
TEST_ERROR;
if (H5FD__onion_revision_index_find(rix_p, 100, &entry_out_p) < 0)
TEST_ERROR;
if (100 != entry_out_p->logical_page || 101 != entry_out_p->phys_addr)
TEST_ERROR;
if (H5FD__onion_revision_index_destroy(rix_p) < 0)
TEST_ERROR;
PASSED();
return 0;
error:
if (rix_p != NULL)
(void)H5FD__onion_revision_index_destroy(rix_p);
return -1;
} /* end test_revision_index() */
/*-----------------------------------------------------------------------------
* Function: test_revision_index_collisions()
*
* Purpose: With knowledge of the revision index implementation, test
* hash key collisions.
*
* Return: PASSED : 0
* FAILED : -1
*-----------------------------------------------------------------------------
*/
static int
test_revision_index_collisions(void)
{
H5FD_onion_revision_index_t *rix_p = NULL;
H5FD_onion_index_entry_t entry = {
0, /* logical_page */
0, /* phys_addr */
};
const H5FD_onion_index_entry_t *entry_out_p = NULL;
const uint64_t n_insert = 40;
const uint64_t offset_from_power = 5;
TESTING("revision index collisions");
if (NULL == (rix_p = H5FD__onion_revision_index_init(ONION_TEST_PAGE_SIZE_5)))
TEST_ERROR;
for (uint64_t i = 0; i < n_insert; i++) {
entry.phys_addr = i;
entry.logical_page = U64_EXP2(i) + offset_from_power;
if (H5FD__onion_revision_index_insert(rix_p, &entry) < 0)
TEST_ERROR;
}
if (n_insert != rix_p->n_entries)
TEST_ERROR;
for (uint64_t i = 0; i < n_insert; i++) {
uint64_t page_id = U64_EXP2(i) + offset_from_power;
if (H5FD__onion_revision_index_find(rix_p, page_id, &entry_out_p) != 1)
TEST_ERROR;
if (entry_out_p->phys_addr != i)
TEST_ERROR;
}
if (H5FD__onion_revision_index_destroy(rix_p) < 0)
TEST_ERROR;
PASSED();
return 0;
error:
if (rix_p != NULL)
(void)H5FD__onion_revision_index_destroy(rix_p);
return -1;
} /* end test_revision_index_collisions() */
/*-----------------------------------------------------------------------------
*
* Function: test_revision_index_resizing()
*
* Purpose: With knowledge of the revision index implementation, test
* one or more resizig of the index.
*
* Return: PASSED : 0
* FAILED : -1
*
*-----------------------------------------------------------------------------
*/
static int
test_revision_index_resizing(void)
{
H5FD_onion_revision_index_t *rix_p = NULL;
H5FD_onion_index_entry_t entry = {
0, /* logical_page */
0, /* phys_addr */
};
const H5FD_onion_index_entry_t *entry_out_p = NULL;
const uint64_t n_insert = U64_EXP2((H5FD_ONION_REVISION_INDEX_STARTING_SIZE_LOG2 + 3));
TESTING("revision index resizing");
if (NULL == (rix_p = H5FD__onion_revision_index_init(ONION_TEST_PAGE_SIZE_5)))
TEST_ERROR;
for (uint64_t i = 0; i < n_insert; i++) {
entry.logical_page = i;
entry.phys_addr = ((uint64_t)(-1) - i);
if (H5FD__onion_revision_index_insert(rix_p, &entry) < 0)
TEST_ERROR;
}
if (n_insert != rix_p->n_entries)
TEST_ERROR;
for (uint64_t i = 0; i < n_insert; i++) {
uint64_t page_id = i;
if (H5FD__onion_revision_index_find(rix_p, page_id, &entry_out_p) != 1)
TEST_ERROR;
if (entry_out_p->phys_addr != ((uint64_t)(-1) - i))
TEST_ERROR;
}
if (H5FD__onion_revision_index_destroy(rix_p) < 0)
TEST_ERROR;
PASSED();
return 0;
error:
if (rix_p != NULL)
(void)H5FD__onion_revision_index_destroy(rix_p);
return -1;
} /* end test_revision_index_resizing() */
/*-----------------------------------------------------------------------------
* Function: test_revision_index_to_archival_index()
*
* Purpose: Verify to_archival_index().
*
* Return: PASSED : 0
* FAILED : -1
*-----------------------------------------------------------------------------
*/
static int
test_revision_index_to_archival_index(void)
{
H5FD_onion_revision_index_t *rix_p = NULL;
H5FD_onion_index_entry_t rix_entry = {
0, /* logical_page */
0, /* phys_addr */
};
H5FD_onion_archival_index_t aix = {
H5FD_ONION_ARCHIVAL_INDEX_VERSION_CURR,
5, /* page_size_log2 */
0, /* n_entries to be set */
NULL,
};
const uint64_t n_insert = 10;
TESTING("revision index to archival index");
/*
* SETUP
*/
if (NULL == (rix_p = H5FD__onion_revision_index_init(ONION_TEST_PAGE_SIZE_5)))
TEST_ERROR;
/* Add scattered entries in reverse order. */
for (uint64_t i = 0; i < n_insert; i++) {
uint64_t n = 2003 * (n_insert - i) + 47;
rix_entry.logical_page = n;
rix_entry.phys_addr = n * 13;
if (H5FD__onion_revision_index_insert(rix_p, &rix_entry) < 0)
TEST_ERROR;
}
if (n_insert != rix_p->n_entries)
TEST_ERROR;
aix.list = NULL;
aix.n_entries = 0;
/* Successful merge into empty archival index */
if (H5FD__onion_merge_revision_index_into_archival_index(rix_p, &aix) < 0)
TEST_ERROR;
if (!H5FD__onion_archival_index_is_valid(&aix))
TEST_ERROR;
if (n_insert != aix.n_entries)
TEST_ERROR;
for (uint64_t i = 0; i < n_insert; i++) {
const H5FD_onion_index_entry_t *aix_entry_p = NULL;
uint64_t n = 2003 * (i + 1) + 47;
aix_entry_p = &aix.list[i];
if (aix_entry_p->logical_page != n)
TEST_ERROR;
if (aix_entry_p->phys_addr != (n * 13))
TEST_ERROR;
}
/* Successful merge into populated archival index */
H5MM_xfree(aix.list);
aix.list = NULL;
if (NULL == (aix.list = H5MM_malloc(sizeof(H5FD_onion_index_entry_t) * 2)))
TEST_ERROR;
aix.list[0].logical_page = 47;
aix.list[0].phys_addr = 47 * 13;
aix.list[1].logical_page = (2003 * (n_insert + 1) + 47);
aix.list[1].phys_addr = (2003 * (n_insert + 1) + 47) * 13;
aix.n_entries = 2;
if (!H5FD__onion_archival_index_is_valid(&aix))
TEST_ERROR;
if (H5FD__onion_merge_revision_index_into_archival_index(rix_p, &aix) < 0)
TEST_ERROR;
if (!H5FD__onion_archival_index_is_valid(&aix))
TEST_ERROR;
if (n_insert + 2 != aix.n_entries)
TEST_ERROR;
for (uint64_t i = 0; i < (n_insert + 2); i++) {
const H5FD_onion_index_entry_t *aix_entry_p = NULL;
uint64_t n = 2003 * i + 47;
aix_entry_p = &aix.list[i];
if (aix_entry_p->logical_page != n)
TEST_ERROR;
if (aix_entry_p->phys_addr != (n * 13))
TEST_ERROR;
}
/* Merged enties from revision index replace existing entries */
H5MM_xfree(aix.list);
aix.list = NULL;
if (NULL == (aix.list = H5MM_malloc(sizeof(H5FD_onion_index_entry_t) * 2)))
TEST_ERROR;
aix.list[0].logical_page = 2003 * (n_insert / 2) + 47;
aix.list[0].phys_addr = 103;
aix.list[1].logical_page = 2003 * (n_insert / 2 + 1) + 47;
aix.list[1].phys_addr = 101;
aix.n_entries = 2;
if (!H5FD__onion_archival_index_is_valid(&aix))
TEST_ERROR;
if (H5FD__onion_merge_revision_index_into_archival_index(rix_p, &aix) < 0)
TEST_ERROR;
if (!H5FD__onion_archival_index_is_valid(&aix))
TEST_ERROR;
if (n_insert != aix.n_entries)
TEST_ERROR;
for (uint64_t i = 0; i < n_insert; i++) {
const H5FD_onion_index_entry_t *aix_entry_p = NULL;
uint64_t n = 2003 * (i + 1) + 47;
aix_entry_p = &aix.list[i];
if (aix_entry_p->logical_page != n)
TEST_ERROR;
if (aix_entry_p->phys_addr != (n * 13))
TEST_ERROR;
}
/* CLEANUP */
if (H5FD__onion_revision_index_destroy(rix_p) < 0)
TEST_ERROR;
H5MM_xfree(aix.list);
PASSED();
return 0;
error:
if (rix_p)
(void)H5FD__onion_revision_index_destroy(rix_p);
H5MM_xfree(aix.list);
return -1;
} /* end test_revision_index_to_archival_index() */
/*-----------------------------------------------------------------------------
* Function: test_fapl()
*
* Purpose: Verify H5Pget and set behavior, and data-consistency checks.
*
* Return: PASSED : 0
* FAILED : -1
*-----------------------------------------------------------------------------
*/
static int
test_fapl(void)
{
H5FD_onion_fapl_info_t info_in = {
H5FD_ONION_FAPL_INFO_VERSION_CURR,
H5P_DEFAULT, /* backing_fapl_id */
ONION_TEST_PAGE_SIZE_1, /* page_size */
H5FD_ONION_STORE_TARGET_ONION, /* store_target */
H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST,
0, /* force_write_open */
0, /* creation_flags */
"indoor speaking voices", /* comment */
};
H5FD_onion_fapl_info_t info_out;
hid_t dxpl_id = H5I_INVALID_HID;
hid_t fapl_id = H5I_INVALID_HID;
hid_t fapl_id_sec2 = H5I_INVALID_HID;
herr_t ret = FAIL;
TESTING("file access property list");
if ((dxpl_id = H5Pcreate(H5P_DATASET_XFER)) < 0)
TEST_ERROR;
if ((fapl_id_sec2 = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
if (H5Pset_fapl_sec2(fapl_id_sec2))
TEST_ERROR;
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
/* Set FAPL */
/* Invalid fapl should fail */
H5E_BEGIN_TRY
{
ret = H5Pset_fapl_onion(H5I_INVALID_HID, &info_in);
}
H5E_END_TRY
if (SUCCEED == ret)
TEST_ERROR;
/* NULL info pointer should fail */
H5E_BEGIN_TRY
{
ret = H5Pset_fapl_onion(fapl_id, NULL);
}
H5E_END_TRY
if (SUCCEED == ret)
TEST_ERROR;
/* Invalid version should fail */
info_in.version++;
H5E_BEGIN_TRY
{
ret = H5Pset_fapl_onion(fapl_id, &info_in);
}
H5E_END_TRY
if (SUCCEED == ret)
TEST_ERROR;
info_in.version--;
/* Page size not a power of 2 should fail */
info_in.page_size = 7;
H5E_BEGIN_TRY
{
ret = H5Pset_fapl_onion(fapl_id, &info_in);
}
H5E_END_TRY
if (SUCCEED == ret)
TEST_ERROR;
/* Page size <=0 should fail */
info_in.page_size = 0;
H5E_BEGIN_TRY
{
ret = H5Pset_fapl_onion(fapl_id, &info_in);
}
H5E_END_TRY
if (SUCCEED == ret)
TEST_ERROR;
info_in.page_size = ONION_TEST_PAGE_SIZE_1;
/* Invalid backing fapl should fail */
info_in.backing_fapl_id = H5I_INVALID_HID;
H5E_BEGIN_TRY
{
ret = H5Pset_fapl_onion(fapl_id, &info_in);
}
H5E_END_TRY
if (SUCCEED == ret)
TEST_ERROR;
/* Backing fapl not a fapl should fail */
info_in.backing_fapl_id = dxpl_id;
H5E_BEGIN_TRY
{
ret = H5Pset_fapl_onion(fapl_id, &info_in);
}
H5E_END_TRY
if (SUCCEED == ret)
TEST_ERROR;
info_in.backing_fapl_id = H5P_DEFAULT;
if (H5Pset_fapl_onion(fapl_id, &info_in) < 0)
TEST_ERROR;
/* Get onion fapl info */
/* NULL info_out pointer should fail */
H5E_BEGIN_TRY
{
ret = H5Pget_fapl_onion(fapl_id, NULL);
}
H5E_END_TRY
if (SUCCEED == ret)
TEST_ERROR;
/* Invalid fapl should fail */
H5E_BEGIN_TRY
{
ret = H5Pget_fapl_onion(H5I_INVALID_HID, &info_out);
}
H5E_END_TRY
if (SUCCEED == ret)
TEST_ERROR;
/* Non-onion fapl ID should fail */
H5E_BEGIN_TRY
{
ret = H5Pget_fapl_onion(fapl_id_sec2, &info_out);
}
H5E_END_TRY
if (SUCCEED == ret)
TEST_ERROR;
/* Normal case */
if (H5Pget_fapl_onion(fapl_id, &info_out) < 0)
TEST_ERROR;
if (H5FD_ONION_FAPL_INFO_VERSION_CURR != info_out.version)
TEST_ERROR;
if (H5P_DEFAULT != info_out.backing_fapl_id)
TEST_ERROR;
if (ONION_TEST_PAGE_SIZE_1 != info_out.page_size)
TEST_ERROR;
if (H5FD_ONION_STORE_TARGET_ONION != info_out.store_target)
TEST_ERROR;
if (H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST != info_out.revision_num)
TEST_ERROR;
if (0 != info_out.creation_flags)
TEST_ERROR;
if (0 != info_out.force_write_open)
TEST_ERROR;
if (strcmp(info_in.comment, info_out.comment))
TEST_ERROR;
/* Cleanup */
if (H5Pclose(dxpl_id) < 0)
TEST_ERROR;
if (H5Pclose(fapl_id) < 0)
TEST_ERROR;
if (H5Pclose(fapl_id_sec2) < 0)
TEST_ERROR;
PASSED();
return 0;
error:
H5E_BEGIN_TRY
{
H5Pclose(dxpl_id);
H5Pclose(fapl_id);
H5Pclose(fapl_id_sec2);
}
H5E_END_TRY
return -1;
} /* end test_fapl() */
/*-----------------------------------------------------------------------------
* Function: test_header_encode_decode()
*
* Purpose: Verify onion header encoding and decoding behavior.
*
* Return: PASSED : 0
* FAILED : -1
*-----------------------------------------------------------------------------
*/
static int
test_header_encode_decode(void)
{
unsigned char buf[64];
unsigned char exp[64] = {
/* bogus but unique values */
'O', 'H', 'D', 'H', /* NOTE: match signature define in onion_priv.h */
1, 12, 0, 0, /* NOTE: update version w/ "current" as needed */
0, 16, 0, 0, 0x11, 0x00, 0, 0, 0x02, 0, 0, 0, /* origin_eof */
0x40, 0xe2, 0x01, 0, 0, 0, 0, 0, /* history_addr */
88, 0, 0, 0, 0, 0, 0, 0, /* history_size */
0, 0, 0, 0 /* sum populated below */
};
unsigned char *ptr = NULL;
uint32_t checksum = 0;
uint32_t checksum_out = 0;
size_t i = 0;
uint64_t size_ret = 0;
H5FD_onion_header_t hdr;
H5FD_onion_header_t hdr_out;
TESTING("encode/decode history header");
checksum = H5_checksum_fletcher32(exp, H5FD_ONION_ENCODED_SIZE_HEADER - 4);
ptr = exp + H5FD_ONION_ENCODED_SIZE_HEADER - 4;
UINT32ENCODE(ptr, checksum);
hdr.version = H5FD_ONION_HEADER_VERSION_CURR;
hdr.flags = 12;
hdr.origin_eof = 8589934609ull;
hdr.page_size = 4096;
hdr.history_addr = 123456;
hdr.history_size = 88;
if (H5FD__onion_header_encode(&hdr, buf, &checksum_out) != H5FD_ONION_ENCODED_SIZE_HEADER)
TEST_ERROR;
if (checksum != checksum_out)
TEST_ERROR;
for (i = 0; i < H5FD_ONION_ENCODED_SIZE_HEADER; i++) {
if (exp[i] != buf[i]) {
printf("first mismatched byte at %zu: %02x %02x\n", i, exp[i], buf[i]);
TEST_ERROR;
}
}
hdr_out.version = H5FD_ONION_HEADER_VERSION_CURR;
hdr_out.flags = 0;
hdr_out.page_size = 0;
hdr_out.history_addr = 0;
hdr_out.history_size = 0;
/* Invalid header signature prevents decoding.
*/
exp[3] = 'X'; /* invalidate encoded signature */
H5E_BEGIN_TRY
{
size_ret = H5FD__onion_header_decode(exp, &hdr_out);
}
H5E_END_TRY
if (0 != size_ret)
TEST_ERROR;
exp[3] = 'H'; /* reset */
/* Invalid header version prevents decoding.
*/
exp[4] = 0; /* encoded version 0?!? */
H5E_BEGIN_TRY
{
size_ret = H5FD__onion_header_decode(exp, &hdr_out);
}
H5E_END_TRY
if (0 != size_ret)
TEST_ERROR;
exp[4] = H5FD_ONION_HEADER_VERSION_CURR + 1; /* encoded super-version?! */
H5E_BEGIN_TRY
{
size_ret = H5FD__onion_header_decode(exp, &hdr_out);
}
H5E_END_TRY
if (0 != size_ret)
TEST_ERROR;
/* Reset */
exp[4] = H5FD_ONION_HEADER_VERSION_CURR;
/* Valid header can be decoded */
if (H5FD__onion_header_decode(buf, &hdr_out) != H5FD_ONION_ENCODED_SIZE_HEADER)
TEST_ERROR;
if (H5FD_ONION_HEADER_VERSION_CURR != hdr_out.version)
TEST_ERROR;
if (hdr.flags != hdr_out.flags)
TEST_ERROR;
if (hdr.page_size != hdr_out.page_size)
TEST_ERROR;
if (hdr.history_addr != hdr_out.history_addr)
TEST_ERROR;
if (hdr.history_size != hdr_out.history_size)
TEST_ERROR;
PASSED();
return 0;
error:
return -1;
} /* end test_header_encode_decode() */
/*-----------------------------------------------------------------------------
* Function: test_history_encode_decode_empty()
*
* Purpose: Verify onion history encoding and decoding behavior.
* Tests the case of the "empty" history.
* Verifies behavior in standard error cases.
*
* Return: PASSED : 0
* FAILED : -1
*-----------------------------------------------------------------------------
*/
static int
test_history_encode_decode_empty(void)
{
unsigned char buf[32];
unsigned char exp[32] = {
'O', 'W', 'H', 'S', /* NOTE: match signature define in onion_priv.h */
1, 0, 0, 0, /* NOTE: update version w/ "current" as needed */
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 /* sum populated below */
};
unsigned char *ptr = NULL;
uint32_t checksum = 0;
uint32_t checksum_out = 0;
size_t i = 0;
uint64_t size_ret = 0;
H5FD_onion_history_t history = {
H5FD_ONION_HISTORY_VERSION_CURR, 0, /* n_revisions */
NULL, /* list */
0, /* checksum */
};
H5FD_onion_history_t history_out = {
H5FD_ONION_HISTORY_VERSION_CURR, 0, /* n_revisions */
NULL, /* list */
0, /* checksum */
};
TESTING("encode/decode history (empty and failures)");
/* Generate checksum but don't store it yet */
checksum = H5_checksum_fletcher32(exp, H5FD_ONION_ENCODED_SIZE_HISTORY - 4);
ptr = exp + H5FD_ONION_ENCODED_SIZE_HISTORY - 4;
UINT32ENCODE(ptr, checksum);
if (H5FD__onion_history_encode(&history, buf, &checksum_out) != H5FD_ONION_ENCODED_SIZE_HISTORY)
TEST_ERROR;
for (i = 0; i < 20; i++) {
if (exp[i] != buf[i]) {
printf("first mismatched byte at %zu: %02x %02x\n", i, exp[i], buf[i]);
TEST_ERROR;
}
}
if (checksum != checksum_out)
TEST_ERROR;
history.checksum = checksum; /* set to compare later */
/* Invalid signature prevents decoding */
exp[3] = 'X'; /* invalidate encoded signature */
H5E_BEGIN_TRY
{
size_ret = H5FD__onion_history_decode(exp, &history_out);
}
H5E_END_TRY
if (0 != size_ret)
TEST_ERROR;
exp[3] = 'H'; /* reset */
/* Invalid version prevents decoding */
exp[4] = 0; /* encoded version 0?!? */
H5E_BEGIN_TRY
{
size_ret = H5FD__onion_history_decode(exp, &history_out);
}
H5E_END_TRY
if (0 != size_ret)
TEST_ERROR;
exp[4] = H5FD_ONION_HISTORY_VERSION_CURR + 1;
H5E_BEGIN_TRY
{
size_ret = H5FD__onion_history_decode(exp, &history_out);
}
H5E_END_TRY
if (0 != size_ret)
TEST_ERROR;
exp[4] = H5FD_ONION_HISTORY_VERSION_CURR; /* reset */
/* Valid summary can be decoded */
if (H5FD__onion_history_decode(buf, &history_out) != H5FD_ONION_ENCODED_SIZE_HISTORY)
TEST_ERROR;
if (H5FD_ONION_HISTORY_VERSION_CURR != history_out.version)
TEST_ERROR;
if (history.n_revisions != history_out.n_revisions)
TEST_ERROR;
if (history.checksum != history_out.checksum)
TEST_ERROR;
if (NULL != history_out.record_locs)
TEST_ERROR;
PASSED();
return 0;
error:
return -1;
} /* end test_history_encode_decode_empty() */
/*-----------------------------------------------------------------------------
* Function: test_history_encode_decode()
*
* Purpose: Verify onion history encoding and decoding behavior.
* Encode/decode with some set of revision record pointers.
*
* Return: PASSED : 0
* FAILED : -1
*-----------------------------------------------------------------------------
*/
static int
test_history_encode_decode(void)
{
unsigned char *buf = NULL;
unsigned char exp[80] = {
'O', 'W', 'H', 'S', /* NOTE: match signature define in onion_priv.h */
1, 0, 0, 0, /* NOTE: update version w/ "current" as needed */
3, 0, 0, 0, 0, 0, 0, 0,
/* rev0 pointer */
56, 2, 0, 0, 0, 0, 0, 0, 238, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, /* sum populated below */
/* rev1 pointer */
121, 173, 3, 0, 0, 0, 0, 0, 203, 17, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, /* sum populated below */
/* rev2 pointer */
96, 158, 52, 198, 213, 0, 0, 0, 240, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, /* sum populated below */
/* final checksum */
0, 0, 0, 0 /* sum populated below */
};
unsigned char *buf_p = NULL;
uint32_t checksum_out = 0;
size_t i = 0;
H5FD_onion_history_t history = {
H5FD_ONION_HISTORY_VERSION_CURR, 3, /* n_revisions */
NULL, /* list set below */
0, /* checksum not set by us */
};
H5FD_onion_history_t history_out = {
H5FD_ONION_HISTORY_VERSION_CURR, 0, /* n_revisions must start as zero */
NULL, /* list */
0, /* checksum */
};
size_t exp_size =
H5FD_ONION_ENCODED_SIZE_HISTORY + H5FD_ONION_ENCODED_SIZE_RECORD_POINTER * history.n_revisions;
TESTING("encode/decode history");
if (80 != exp_size)
TEST_ERROR;
history.record_locs = calloc(history.n_revisions, sizeof(H5FD_onion_record_loc_t));
if (NULL == history.record_locs)
TEST_ERROR;
/* Must match values in exp */
history.record_locs[0].phys_addr = 568ull;
history.record_locs[0].record_size = 238ull;
history.record_locs[1].phys_addr = 241017ull;
history.record_locs[1].record_size = 4555ull;
history.record_locs[2].phys_addr = 918153371232ull;
history.record_locs[2].record_size = 240ull;
/* Populate revision pointer sums in exp */
for (i = 0; i < history.n_revisions; i++) {
uint64_t history_pre = H5FD_ONION_ENCODED_SIZE_HISTORY - 4;
uint64_t ptr_pre = H5FD_ONION_ENCODED_SIZE_RECORD_POINTER - 4;
uint64_t ptr_size = H5FD_ONION_ENCODED_SIZE_RECORD_POINTER;
buf_p = exp + history_pre + ptr_size * i;
history.record_locs[i].checksum = H5_checksum_fletcher32(buf_p, ptr_pre);
buf_p += ptr_pre;
UINT32ENCODE(buf_p, history.record_locs[i].checksum);
}
/* Compute, populate, and store exp final sum */
history.checksum = H5_checksum_fletcher32(exp, exp_size - 4);
buf_p = exp + exp_size - 4;
UINT32ENCODE(buf_p, history.checksum);
if (NULL == (buf = malloc(exp_size)))
TEST_ERROR;
if (H5FD__onion_history_encode(&history, buf, &checksum_out) != exp_size)
TEST_ERROR;
for (i = 0; i < exp_size; i++) {
if (exp[i] != buf[i])
TEST_ERROR;
}
if (history.checksum != checksum_out)
TEST_ERROR;
/* Initial decode, gets always-present components */
history_out.n_revisions = 0; /* must be initialized to 0 */
if (H5FD__onion_history_decode(exp, &history_out) != exp_size)
TEST_ERROR;
if (H5FD_ONION_HISTORY_VERSION_CURR != history_out.version)
TEST_ERROR;
if (history.n_revisions != history_out.n_revisions)
TEST_ERROR;
/* Must be created by us */
if (NULL != history_out.record_locs)
TEST_ERROR;
/* True decode requires allocating space for record pointers */
history_out.record_locs = calloc(history_out.n_revisions, sizeof(H5FD_onion_record_loc_t));
if (NULL == history_out.record_locs)
TEST_ERROR;
if (H5FD__onion_history_decode(exp, &history_out) != exp_size)
TEST_ERROR;
if (H5FD_ONION_HISTORY_VERSION_CURR != history_out.version)
TEST_ERROR;
if (history.n_revisions != history_out.n_revisions)
TEST_ERROR;
if (history.checksum != history_out.checksum)
TEST_ERROR;
if (NULL == history_out.record_locs)
TEST_ERROR;
for (i = 0; i < history.n_revisions; i++) {
H5FD_onion_record_loc_t exp_rp = history.record_locs[i];
H5FD_onion_record_loc_t act_rp = history_out.record_locs[i];
if (exp_rp.phys_addr != act_rp.phys_addr)
TEST_ERROR;
if (exp_rp.record_size != act_rp.record_size)
TEST_ERROR;
if (exp_rp.checksum != act_rp.checksum)
TEST_ERROR;
}
free(history_out.record_locs);
free(buf);
free(history.record_locs);
PASSED();
return 0;
error:
free(history_out.record_locs);
free(buf);
free(history.record_locs);
return -1;
} /* end test_history_encode_decode() */
/*-----------------------------------------------------------------------------
*
* Function: test_revision_record_encode_decode()
*
* Purpose: Verify onion revision-record encoding and decoding behavior.
*
* Return: PASSED : 0
* FAILED : -1
*
*-----------------------------------------------------------------------------
*/
static int
test_revision_record_encode_decode(void)
{
/* clang-format off */
/* Byte array of expected values (FRAGILE!) */
unsigned char exp[173] = {
'O', 'R', 'R', 'S', /* Bytes 000-003: signature */
1, 0, 0, 0, /* Bytes 004-007: version */
5, 0, 0, 0, 0, 0, 0, 0, /* Bytes 008-015: revision ID */
2, 0, 0, 0, 0, 0, 0, 0, /* Bytes 016-023: parent revision ID */
'1', '9', '4', '1', '1', '2', '0', '7', /* Bytes 024-039: time of creation */
'T', '1', '9', '0', '6', '4', '3', 'Z', /* ... */
0x11, 0x00, 0, 0, 0x02, 0, 0, 0, /* Bytes 040-047: logical file size */
0, 16, 0, 0, /* Bytes 048-051: page size */
4, 0, 0, 0, 0, 0, 0, 0, /* Bytes 052-059: # entries */
25, 0, 0, 0, /* Bytes 060-063: comment size */
/* ENTRY 0 */
0, 0xB0, 0x1E, 0, 0, 0, 0, 0, /* Bytes 064-071: entry 0: logical offset */
0x4B, 0x02, 0, 0, 0, 0, 0, 0, /* Bytes 072-079: entry 0: physical address */
0, 0, 0, 0, /* Bytes 080-083: checksum (populated below) */
/* ENTRY 1 */
0, 0xF0, 0x2E, 0, 0, 0, 0, 0, /* Bytes 084-091: entry 1: logical offset */
0xA7, 0, 0, 0, 0, 0, 0, 0, /* Bytes 092-099: entry 1: physical address */
0, 0, 0, 0, /* Bytes 100-103: checksum (populated below) */
/* ENTRY 2 */
0, 0x50, 0x15, 0, 0, 0x20, 0, 0, /* Bytes 104-111: entry 2: logical offset */
0x11, 0, 0, 0, 0x02, 0, 0, 0, /* Bytes 112-119: entry 2: physical address */
0, 0, 0, 0, /* Bytes 120-123: checksum (populated below) */
/* ENTRY 3 */
0, 0xE0, 0x24, 0, 0, 0, 0, 0, /* Bytes 124-131: entry 3: logical offset */
0xB1, 0x01, 0, 0, 0, 0, 0, 0, /* Bytes 132-139: entry 3: physical address */
0, 0, 0, 0, /* Bytes 140-143: checksum (populated below) */
'E', 'x', 'a', 'm', 'p', 'l', 'e', ' ', /* Bytes 144-168: comment */
'c', 'o', 'm', 'm', 'e', 'n', 't', ' ', /* ... */
'm', 'e', 's', 's', 'a', 'g', 'e', '.', /* ... */
'\0', /* ... */
0, 0, 0, 0 /* Bytes 169-172: final checksum (populated below) */
};
/* clang-format on */
unsigned char *buf = NULL;
unsigned char *buf_p = NULL;
size_t i = 0;
uint64_t size_ret;
H5FD_onion_revision_record_t r_out;
uint32_t checksum = 0;
bool badness = false;
char comment[25] = "Example comment message.";
H5FD_onion_revision_record_t record = {
H5FD_ONION_REVISION_RECORD_VERSION_CURR,
5, /* revision ID */
2, /* parent revision ID */
{'\0'}, /* time of creation - populated below */
8589934609ull, /* logical file size */
{
H5FD_ONION_ARCHIVAL_INDEX_VERSION_CURR, /* version */
12, /* page_size_log2 */
4, /* n_entries */
NULL, /* list - populated below */
}, /* archival index struct */
25, /* comment size */
comment, /* comment */
0, /* checksum (computed later) */
};
size_t exp_size = H5FD_ONION_ENCODED_SIZE_REVISION_RECORD +
(H5FD_ONION_ENCODED_SIZE_INDEX_ENTRY * record.archival_index.n_entries) +
strlen("Example comment message.") + 1;
r_out.archival_index.list = NULL;
r_out.comment = NULL;
TESTING("encode/decode revision record");
memcpy(record.time_of_creation, "19411207T190643Z", 16);
record.archival_index.list = calloc(record.archival_index.n_entries, sizeof(H5FD_onion_index_entry_t));
if (NULL == record.archival_index.list)
TEST_ERROR;
/* Convert logical_page and should match address in expected buffer */
record.archival_index.list[0].logical_page = 491ull;
record.archival_index.list[0].phys_addr = 587ull;
record.archival_index.list[1].logical_page = 751ull;
record.archival_index.list[1].phys_addr = 167ull;
record.archival_index.list[2].logical_page = 8589934933ull;
record.archival_index.list[2].phys_addr = 8589934609ull;
record.archival_index.list[3].logical_page = 590ull;
record.archival_index.list[3].phys_addr = 433ull;
/* Set expected checksum for each archival index entry in buffer */
for (i = 0; i < record.archival_index.n_entries; i++) {
uint64_t rec_pre = H5FD_ONION_ENCODED_SIZE_REVISION_RECORD - 4;
uint64_t idx_pre = H5FD_ONION_ENCODED_SIZE_INDEX_ENTRY - 4;
uint64_t idx_size = H5FD_ONION_ENCODED_SIZE_INDEX_ENTRY;
buf_p = exp + rec_pre + idx_size * i;
checksum = H5_checksum_fletcher32(buf_p, idx_pre);
buf_p += idx_pre;
UINT32ENCODE(buf_p, checksum);
}
checksum = 0;
record.checksum = H5_checksum_fletcher32(exp, exp_size - 4);
buf_p = exp + exp_size - 4;
UINT32ENCODE(buf_p, record.checksum);
/* Required initialization for record-out structure */
r_out.version = H5FD_ONION_REVISION_RECORD_VERSION_CURR;
r_out.comment_size = 0;
r_out.comment = NULL;
r_out.archival_index.version = H5FD_ONION_ARCHIVAL_INDEX_VERSION_CURR;
r_out.archival_index.n_entries = 0;
r_out.archival_index.list = NULL;
if (NULL == (buf = malloc(sizeof(unsigned char) * exp_size)))
TEST_ERROR;
/* Test encode */
if (H5FD__onion_revision_record_encode(&record, buf, &checksum) != exp_size)
TEST_ERROR;
for (i = 0; i < exp_size; i++) {
if (exp[i] != buf[i]) {
badness = true;
printf("Bad encoded record - Index %zu: expected 0x%02X but got 0x%02X\n", i,
(unsigned int)exp[i], (unsigned int)buf[i]);
}
}
if (badness) {
/* If this fragile test breaks, this information is helpful... */
printf("INDEX\n");
for (i = 0; i < exp_size; i++)
printf("%4zu ", i);
printf("\n");
printf("EXPECTED\n");
for (i = 0; i < exp_size; i++)
printf("0x%02X ", (unsigned int)exp[i]);
printf("\n");
printf("ACTUAL\n");
for (i = 0; i < exp_size; i++)
printf("0x%02X ", (unsigned int)buf[i]);
printf("\n");
}
if (badness)
TEST_ERROR;
if (record.checksum != checksum)
TEST_ERROR;
/* Test decode (malformed encoding) */
/* Invalid signature */
exp[2] = 'Y';
H5E_BEGIN_TRY
{
size_ret = H5FD__onion_revision_record_decode(exp, &r_out);
}
H5E_END_TRY
if (0 != size_ret)
TEST_ERROR;
exp[2] = 'R'; /* reset */
/* Zero version */
exp[4] = 0;
H5E_BEGIN_TRY
{
size_ret = H5FD__onion_revision_record_decode(exp, &r_out);
}
H5E_END_TRY
if (0 != size_ret)
TEST_ERROR;
/* Advance version */
exp[4] = H5FD_ONION_REVISION_RECORD_VERSION_CURR + 1;
H5E_BEGIN_TRY
{
size_ret = H5FD__onion_revision_record_decode(exp, &r_out);
}
H5E_END_TRY
if (0 != size_ret)
TEST_ERROR;
exp[4] = H5FD_ONION_REVISION_RECORD_VERSION_CURR; /* reset */
/* Test successful decode */
/* Initial decode; get variable-length component sizes */
if (H5FD__onion_revision_record_decode(exp, &r_out) != exp_size)
TEST_ERROR;
if (record.comment_size != r_out.comment_size)
TEST_ERROR;
if (record.archival_index.n_entries != r_out.archival_index.n_entries)
TEST_ERROR;
/* Allocate variable-length components */
r_out.comment = calloc(r_out.comment_size, sizeof(char));
if (NULL == r_out.comment)
TEST_ERROR;
r_out.archival_index.list = calloc(r_out.archival_index.n_entries, sizeof(H5FD_onion_index_entry_t));
if (NULL == r_out.archival_index.list)
TEST_ERROR;
/* Decode into all components */
if (H5FD__onion_revision_record_decode(exp, &r_out) != exp_size)
TEST_ERROR;
if (H5FD_ONION_REVISION_RECORD_VERSION_CURR != r_out.version)
TEST_ERROR;
if (record.revision_num != r_out.revision_num)
TEST_ERROR;
if (record.parent_revision_num != r_out.parent_revision_num)
TEST_ERROR;
if (record.parent_revision_num != r_out.parent_revision_num)
TEST_ERROR;
if (record.checksum != r_out.checksum)
TEST_ERROR;
if (strncmp(record.time_of_creation, r_out.time_of_creation, 16) != 0)
TEST_ERROR;
if (record.comment_size != r_out.comment_size)
TEST_ERROR;
if (record.comment_size != strlen(r_out.comment) + 1)
TEST_ERROR;
if (strlen(record.comment) != strlen(r_out.comment))
TEST_ERROR;
if (strcmp(record.comment, r_out.comment) != 0)
TEST_ERROR;
if (H5FD_ONION_ARCHIVAL_INDEX_VERSION_CURR != r_out.archival_index.version)
TEST_ERROR;
if (record.archival_index.page_size_log2 != r_out.archival_index.page_size_log2)
TEST_ERROR;
if (record.archival_index.n_entries != r_out.archival_index.n_entries)
TEST_ERROR;
for (i = 0; i < record.archival_index.n_entries; i++) {
H5FD_onion_index_entry_t *ep = &record.archival_index.list[i];
H5FD_onion_index_entry_t *ap = &r_out.archival_index.list[i];
if (ep->phys_addr != ap->phys_addr)
TEST_ERROR;
if (ep->logical_page != ap->logical_page)
TEST_ERROR;
}
/* Cleanup */
free(r_out.archival_index.list);
free(r_out.comment);
free(buf);
free(record.archival_index.list);
PASSED();
return 0;
error:
free(r_out.archival_index.list);
free(r_out.comment);
free(buf);
free(record.archival_index.list);
return -1;
} /* end test_revision_record_encode_decode() */
/*- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
* Use VFL to open target file and check that its bytes exactly match those
* of given buffer 'exp'[ected].
*
* Returns 0 if successful, -1 if error or mismatch.
*- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*/
static int
compare_file_bytes_exactly(const char *filepath, hid_t fapl_id, size_t nbytes, const unsigned char *exp)
{
H5FD_t *raw_vfile = NULL; /* virtual file to look at raw file contents */
unsigned char *act_buf = NULL; /* allocated area for actual file bytes */
uint64_t filesize = 0;
if (NULL == (raw_vfile = H5FDopen(filepath, H5F_ACC_RDONLY, fapl_id, HADDR_UNDEF)))
TEST_ERROR;
/* filesize is wrong w/ stdio - it's zero instead of 40 or whatnot */
filesize = (uint64_t)H5FDget_eof(raw_vfile, H5FD_MEM_DRAW);
if ((uint64_t)nbytes != filesize) {
fprintf(stderr, "\nSizes not the same - nbytes: %zu, filesize: %" PRIu64 "\n", nbytes, filesize);
TEST_ERROR;
}
if (NULL == (act_buf = malloc(nbytes)))
TEST_ERROR;
/* Fill buffer with bogus UCHAR_MAX values */
for (size_t i = 0; i < nbytes; i++)
act_buf[i] = UCHAR_MAX;
if (H5FDset_eoa(raw_vfile, H5FD_MEM_DRAW, nbytes) < 0)
TEST_ERROR;
if (H5FDread(raw_vfile, H5FD_MEM_DRAW, H5P_DEFAULT, 0, nbytes, act_buf) < 0)
TEST_ERROR;
/* Compare raw bytes data */
for (size_t i = 0; i < nbytes; i++) {
if (exp[i] != act_buf[i]) {
printf("first mismatched byte %zu: expected 0x%02X was 0x%02X\n", i, exp[i], act_buf[i]);
TEST_ERROR;
}
}
if (H5FDclose(raw_vfile) < 0)
TEST_ERROR;
free(act_buf);
return 0;
error:
if (raw_vfile != NULL)
H5FDclose(raw_vfile);
free(act_buf);
return -1;
} /* end compare_file_bytes_exactly() */
/*- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
* Do a manual read of the onion history (separate, single "Onion" file).
* Verify that the history data is well-formed and matches the expected state.
*
* Inspect file contents on backing store.
* Return -1 on problem, 0 if okay.
*- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*/
static int
verify_history_as_expected_onion(H5FD_t *raw_file, struct expected_history *filter)
{
unsigned char *buf = NULL; /* allocated area for actual file bytes */
H5FD_onion_header_t hdr_out;
H5FD_onion_history_t history_out;
H5FD_onion_revision_record_t rev_out;
uint64_t filesize = 0;
uint64_t readsize = 0;
uint8_t *ui8p = NULL;
uint32_t buf_checksum = 0;
/* memset to avoid bad frees on errors */
memset(&rev_out, 0, sizeof(H5FD_onion_revision_record_t));
memset(&history_out, 0, sizeof(H5FD_onion_history_t));
hdr_out.version = H5FD_ONION_HEADER_VERSION_CURR;
history_out.version = H5FD_ONION_HISTORY_VERSION_CURR;
history_out.n_revisions = 0;
history_out.record_locs = NULL;
rev_out.version = H5FD_ONION_REVISION_RECORD_VERSION_CURR;
rev_out.archival_index.version = H5FD_ONION_ARCHIVAL_INDEX_VERSION_CURR;
filesize = (uint64_t)H5FDget_eof(raw_file, H5FD_MEM_DRAW);
if (H5FDset_eoa(raw_file, H5FD_MEM_DRAW, filesize) < 0)
TEST_ERROR;
/* Ingest onion header */
readsize = MIN(filesize, H5FD_ONION_ENCODED_SIZE_HEADER);
if (NULL == (buf = malloc(readsize * sizeof(unsigned char))))
TEST_ERROR;
if (H5FDread(raw_file, H5FD_MEM_DRAW, H5P_DEFAULT, 0, readsize, buf) < 0)
TEST_ERROR;
readsize = H5FD__onion_header_decode(buf, &hdr_out);
if (0 == readsize)
TEST_ERROR;
if (H5FD_ONION_HEADER_VERSION_CURR != hdr_out.version)
TEST_ERROR;
/* Decode from the buffer to we can compare on BE systems */
ui8p = (uint8_t *)(&buf[readsize - 4]);
UINT32DECODE(ui8p, buf_checksum);
if (hdr_out.checksum != buf_checksum)
TEST_ERROR;
if (hdr_out.checksum != H5_checksum_fletcher32(buf, readsize - 4))
TEST_ERROR;
if (filter->page_size != hdr_out.page_size)
TEST_ERROR;
if (hdr_out.history_addr + hdr_out.history_size != filesize)
TEST_ERROR;
if (filter->origin_eof != hdr_out.origin_eof)
TEST_ERROR;
free(buf);
buf = NULL;
/* Ingest history */
readsize = hdr_out.history_size;
if (NULL == (buf = malloc(readsize * sizeof(unsigned char))))
TEST_ERROR;
if (H5FDread(raw_file, H5FD_MEM_DRAW, H5P_DEFAULT, hdr_out.history_addr, readsize, buf) < 0)
TEST_ERROR;
/* Initial read, get count of revisions */
readsize = H5FD__onion_history_decode(buf, &history_out);
if (0 == readsize)
TEST_ERROR;
if (H5FD_ONION_HISTORY_VERSION_CURR != history_out.version)
TEST_ERROR;
/* Decode from the buffer to we can compare on BE systems */
ui8p = (uint8_t *)(&buf[readsize - 4]);
UINT32DECODE(ui8p, buf_checksum);
if (history_out.checksum != buf_checksum)
TEST_ERROR;
if (history_out.checksum != H5_checksum_fletcher32(buf, readsize - 4))
TEST_ERROR;
if (filter->n_revisions != history_out.n_revisions)
TEST_ERROR;
/* Final read, populate pointers to revision records */
history_out.record_locs = calloc(history_out.n_revisions, sizeof(H5FD_onion_record_loc_t));
if (NULL == history_out.record_locs)
TEST_ERROR;
if (H5FD__onion_history_decode(buf, &history_out) != readsize)
TEST_ERROR;
/* Reuse buffer space to sanity-check checksum for record pointer(s). */
assert(readsize >= sizeof(H5FD_onion_record_loc_t));
for (size_t i = 0; i < history_out.n_revisions; i++) {
uint64_t phys_addr;
uint64_t record_size;
/* Do a checked assignment from the struct value into appropriately
* sized types. We don't have access to the H5F_t struct for this
* file, so we can't use the offset/length macros in H5Fprivate.h.
*
* Have to do an encode to get these values so the test passes on BE
* systems.
*/
H5_CHECKED_ASSIGN(phys_addr, uint64_t, history_out.record_locs[i].phys_addr, haddr_t);
H5_CHECKED_ASSIGN(record_size, uint64_t, history_out.record_locs[i].record_size, hsize_t);
ui8p = (uint8_t *)buf;
UINT64ENCODE(ui8p, phys_addr);
ui8p = (uint8_t *)(buf + 8);
UINT64ENCODE(ui8p, record_size);
if (history_out.record_locs[i].checksum != H5_checksum_fletcher32(buf, 16))
TEST_ERROR;
}
free(buf);
buf = NULL;
/* Ingest revision(s) */
for (size_t i = 0; i < history_out.n_revisions; i++) {
H5FD_onion_record_loc_t *rpp = &history_out.record_locs[i];
struct expected_revision *erp = &filter->revisions[i];
rev_out.archival_index.list = NULL;
rev_out.archival_index.n_entries = 0;
rev_out.archival_index.page_size_log2 = 0;
rev_out.comment_size = 0;
rev_out.comment = NULL;
readsize = rpp->record_size;
if (NULL == (buf = malloc((size_t)rpp->record_size)))
TEST_ERROR;
if (H5FDread(raw_file, H5FD_MEM_DRAW, H5P_DEFAULT, rpp->phys_addr, rpp->record_size, buf) < 0)
TEST_ERROR;
/* Initial revision read -- get fixed components */
readsize = H5FD__onion_revision_record_decode(buf, &rev_out);
if (0 == readsize)
TEST_ERROR;
if (rpp->record_size != readsize)
TEST_ERROR;
if (H5FD_ONION_REVISION_RECORD_VERSION_CURR != rev_out.version)
TEST_ERROR;
/* Decode from the buffer to we can compare on BE systems */
ui8p = (uint8_t *)(&buf[readsize - 4]);
UINT32DECODE(ui8p, buf_checksum);
if (rev_out.checksum != buf_checksum)
TEST_ERROR;
if (rev_out.checksum != H5_checksum_fletcher32(buf, readsize - 4))
TEST_ERROR;
if (erp->revision_num != rev_out.revision_num)
TEST_ERROR;
if (erp->parent_revision_num != rev_out.parent_revision_num)
TEST_ERROR;
if (erp->logical_eof != rev_out.logical_eof)
TEST_ERROR;
/* Final read, get variable-length data */
if (NULL == (rev_out.comment = malloc((size_t)rev_out.comment_size)))
TEST_ERROR;
rev_out.archival_index.list =
calloc(rev_out.archival_index.n_entries, sizeof(H5FD_onion_index_entry_t));
if (NULL == rev_out.archival_index.list)
TEST_ERROR;
readsize = H5FD__onion_revision_record_decode(buf, &rev_out);
if (rpp->record_size != readsize)
TEST_ERROR;
/* Compare revision info with expected filter */
if (erp->comment == NULL) {
if (rev_out.comment_size != 0)
TEST_ERROR;
}
else {
if (strlen(rev_out.comment) != strlen(erp->comment))
TEST_ERROR;
if (strcmp(rev_out.comment, erp->comment) != 0)
TEST_ERROR;
}
if (erp->n_index_entries != (uint64_t)(-1) &&
erp->n_index_entries != rev_out.archival_index.n_entries)
TEST_ERROR;
free(buf);
free(rev_out.comment);
free(rev_out.archival_index.list);
}
free(history_out.record_locs);
history_out.record_locs = NULL;
return 0;
error:
free(buf);
free(rev_out.comment);
free(rev_out.archival_index.list);
free(history_out.record_locs);
return -1;
} /* end verify_history_as_expected_onion() */
/*- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
* Verify file bytes on the backing store
* + onion storage target
* + create from nothing
* + stage 0 (initializing)
* + open (not yet written)
* + "Empty" .h5 file created
* + .onion file created w/ only header (0 whole-hist addr)
* + .onion.recovery created w/ "empty" history
* + Cannot open onionized canonical file (incomplete history, no rev)
*
* Inspect file contents on backing store.
* Return -1 on problem, 0 if okay.
*- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*/
static int
verify_stored_onion_create_0_open(struct onion_filepaths *paths, H5FD_onion_fapl_info_t *onion_info)
{
H5FD_t *file = NULL; /* virtual file to look at raw file contents */
unsigned char *act_buf = NULL; /* allocated area for actual file bytes */
hid_t fapl_id = onion_info->backing_fapl_id;
herr_t err_ret = FAIL;
unsigned char hdr_exp_bytes[] = {
'O', 'H', 'D', 'H', 1, 1, 0, 0, 0, 0, 0, 0, /* page-size encoded below */
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 20, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, /* checksum encoded below */
};
size_t history_exp_bytes_size = 20;
unsigned char history_exp_bytes[] = {
'O', 'W', 'H', 'S', 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 /* checksum encoded below */
};
unsigned char *ptr = NULL;
uint32_t checksum = 0;
/* Finish populating expected header bytes */
ptr = hdr_exp_bytes + 8; /* WARNING: must match format */
UINT32ENCODE(ptr, onion_info->page_size);
checksum = H5_checksum_fletcher32(hdr_exp_bytes, H5FD_ONION_ENCODED_SIZE_HEADER - 4);
ptr = hdr_exp_bytes + H5FD_ONION_ENCODED_SIZE_HEADER - 4;
UINT32ENCODE(ptr, checksum);
ptr = NULL;
/* Finish populating expected history bytes */
checksum = H5_checksum_fletcher32(history_exp_bytes, H5FD_ONION_ENCODED_SIZE_HISTORY - 4);
ptr = history_exp_bytes + H5FD_ONION_ENCODED_SIZE_HISTORY - 4;
UINT32ENCODE(ptr, checksum);
ptr = NULL;
/* Look at h5 file: should have zero bytes */
file = H5FDopen(paths->canon, H5F_ACC_RDONLY, fapl_id, HADDR_UNDEF);
if (NULL == file)
TEST_ERROR;
/* Size here is arbitrary */
if (NULL == (act_buf = calloc(1, 8)))
TEST_ERROR;
/* Should fail when reading from an empty file */
H5E_BEGIN_TRY
{
err_ret = H5FDread(file, H5FD_MEM_DRAW, H5P_DEFAULT, 0, 1, act_buf);
}
H5E_END_TRY
if (err_ret != FAIL)
TEST_ERROR;
free(act_buf);
act_buf = NULL;
if (H5FDclose(file) < 0)
TEST_ERROR;
file = NULL;
/* Look at onion file: should have header */
if (compare_file_bytes_exactly(paths->onion, fapl_id, H5FD_ONION_ENCODED_SIZE_HEADER, hdr_exp_bytes) < 0)
TEST_ERROR;
/* Look at history backing file: should have nascent history */
if (compare_file_bytes_exactly(paths->recovery, fapl_id, history_exp_bytes_size, history_exp_bytes) < 0)
TEST_ERROR;
/* Inspect .h5 file contents */
if (compare_file_bytes_exactly(paths->canon, fapl_id, 8, (const unsigned char *)"ONIONEOF") < 0)
TEST_ERROR;
return 0;
error:
if (file != NULL)
(void)H5FDclose(file);
free(act_buf);
return -1;
} /* end verify_stored_onion_create_0_open() */
/*-----------------------------------------------------------------------------
* Function: test_create_oniontarget()
*
* Purpose: Test the ability of the Onion VFD to create a valid
* 'onionized' file.
*
* When `truncate_canonical` is false, the canonical file is
* nonexistent on the backing store on onion-creation.
* When `truncate_canonical` is true, a canonical file is created
* on the backing store with known contents, which are to be
* truncated on onion-creation.
*
* Return: PASSED : 0
* FAILED : -1
*-----------------------------------------------------------------------------
*/
static int
test_create_oniontarget(bool truncate_canonical, bool with_initial_data)
{
const char *basename = "somesuch";
hid_t fapl_id = H5I_INVALID_HID;
struct onion_filepaths *paths = NULL;
H5FD_onion_fapl_info_t onion_info = {
H5FD_ONION_FAPL_INFO_VERSION_CURR,
H5P_DEFAULT, /* backing_fapl_id */
ONION_TEST_PAGE_SIZE_5, /* page_size */
H5FD_ONION_STORE_TARGET_ONION, /* store_target */
H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST,
0, /* force_write_open */
0, /* creation_flags */
"initial commit" /* comment */
};
H5FD_t *vfile_raw = NULL; /* virtual file to look at raw file contents */
H5FD_t *vfile_rw = NULL; /* Onion virtual file for read/write */
H5FD_t *vfile_ro = NULL; /* Onion virtual file for read-only */
struct expected_history filter;
char *buf = NULL;
if (true == truncate_canonical && true == with_initial_data)
TESTING("onion creation; truncate extant canonical; w/ initial data");
else if (true == truncate_canonical)
TESTING("onion creation; truncate extant canonical; no initial data");
else if (true == with_initial_data)
TESTING("onion creation; no extant canonical; w/ initial data");
else
TESTING("onion creation; no extant canonical; no initial data");
/*********
* SETUP *
*********/
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
if (NULL == (paths = onion_filepaths_init(basename)))
TEST_ERROR;
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
/* Create canonical file to be truncated */
if (true == truncate_canonical) {
/* Create canonical file. */
vfile_raw = H5FDopen(paths->canon, flags_create_s, onion_info.backing_fapl_id, HADDR_UNDEF);
if (NULL == vfile_raw)
TEST_ERROR;
if (H5FDset_eoa(vfile_raw, H5FD_MEM_DRAW, b_list_size_s) < 0)
TEST_ERROR;
if (H5FDwrite(vfile_raw, H5FD_MEM_DRAW, H5P_DEFAULT, 0, b_list_size_s, b_list_s) < 0)
TEST_ERROR;
if (H5FDclose(vfile_raw) < 0)
TEST_ERROR;
vfile_raw = NULL;
H5E_BEGIN_TRY
{
vfile_raw = H5FDopen(paths->canon, H5F_ACC_RDONLY, fapl_id, HADDR_UNDEF);
}
H5E_END_TRY
/* Check if onion history for onion-open created file */
if (NULL != vfile_raw)
TEST_ERROR;
/* Create "existing onion file". */
vfile_raw = H5FDopen(paths->onion, flags_create_s, onion_info.backing_fapl_id, HADDR_UNDEF);
if (NULL == vfile_raw)
TEST_ERROR;
if (H5FDset_eoa(vfile_raw, H5FD_MEM_DRAW, b_list_size_s) < 0)
TEST_ERROR;
if (H5FDwrite(vfile_raw, H5FD_MEM_DRAW, H5P_DEFAULT, 0, 23, "prior history stand-in") < 0)
TEST_ERROR;
if (H5FDclose(vfile_raw) < 0)
TEST_ERROR;
vfile_raw = NULL;
} /* end if to create canonical file for truncation */
/*
* OPENED
*/
/* Begin creation of onionized file from nothing */
vfile_rw = H5FDopen(paths->canon, flags_create_s, fapl_id, HADDR_UNDEF);
if (NULL == vfile_rw)
TEST_ERROR;
if (verify_stored_onion_create_0_open(paths, &onion_info) < 0)
TEST_ERROR;
H5E_BEGIN_TRY
{
vfile_ro = H5FDopen(paths->canon, H5F_ACC_RDONLY, fapl_id, HADDR_UNDEF);
}
H5E_END_TRY
/* check if onionization (creation) not complete; nothing to open */
if (vfile_ro != NULL)
TEST_ERROR;
/*
* WRITING
*/
if (true == with_initial_data) {
haddr_t half_size = 0;
haddr_t buf_size = 0;
/* Write the sub-page entry at addr 0 */
if (4 >= onion_info.page_size)
TEST_ERROR;
if (H5FDset_eoa(vfile_rw, H5FD_MEM_DRAW, 4) < 0)
TEST_ERROR;
if (H5FDwrite(vfile_rw, H5FD_MEM_DRAW, H5P_DEFAULT, 0, 4, a_list_s) < 0) {
TEST_ERROR;
}
/* Verify logical file contents. */
if (NULL == (buf = malloc(4 * sizeof(char))))
TEST_ERROR;
if (H5FDread(vfile_rw, H5FD_MEM_DRAW, H5P_DEFAULT, 0, 4, buf) < 0)
TEST_ERROR;
if (memcmp(a_list_s, buf, 4) != 0)
TEST_ERROR;
free(buf);
buf = NULL;
/* Write the latter half of buffer at addr 0 (more than one page) */
half_size = a_list_size_s / 2;
buf_size = a_list_size_s - half_size;
if (buf_size <= onion_info.page_size)
TEST_ERROR;
if (H5FDset_eoa(vfile_rw, H5FD_MEM_DRAW, buf_size) < 0)
TEST_ERROR;
if (H5FDwrite(vfile_rw, H5FD_MEM_DRAW, H5P_DEFAULT, 0, buf_size, a_list_s + half_size) < 0)
TEST_ERROR;
/* Verify logical file contents. */
if (NULL == (buf = malloc(buf_size * sizeof(char))))
TEST_ERROR;
if (H5FDread(vfile_rw, H5FD_MEM_DRAW, H5P_DEFAULT, 0, buf_size, buf) < 0)
TEST_ERROR;
if (memcmp(a_list_s + half_size, buf, buf_size) != 0)
TEST_ERROR;
free(buf);
buf = NULL;
/* Overwrite existing data with entire buffer at addr 0 */
if (H5FDset_eoa(vfile_rw, H5FD_MEM_DRAW, a_list_size_s) < 0)
TEST_ERROR;
if (H5FDwrite(vfile_rw, H5FD_MEM_DRAW, H5P_DEFAULT, 0, a_list_size_s, a_list_s) < 0)
TEST_ERROR;
/* Verify logical file contents. */
if (NULL == (buf = malloc(a_list_size_s * sizeof(char))))
TEST_ERROR;
if (H5FDread(vfile_rw, H5FD_MEM_DRAW, H5P_DEFAULT, 0, a_list_size_s, buf) < 0)
TEST_ERROR;
if (memcmp(a_list_s, buf, a_list_size_s) != 0)
TEST_ERROR;
free(buf);
buf = NULL;
} /* end if writing data to logical file */
/*
* CLOSED
*/
if (H5FDclose(vfile_rw) < 0)
TEST_ERROR;
vfile_rw = NULL;
/* Look at h5 file: should be known-empty */
if (compare_file_bytes_exactly(paths->canon, onion_info.backing_fapl_id, 8,
(const unsigned char *)"ONIONEOF") < 0)
TEST_ERROR;
/* Look at recovery file: should be gone */
H5E_BEGIN_TRY
{
vfile_raw = H5FDopen(paths->recovery, H5F_ACC_RDONLY, onion_info.backing_fapl_id, HADDR_UNDEF);
}
H5E_END_TRY
if (NULL != vfile_raw)
TEST_ERROR;
/* Inspect onion file */
vfile_raw = H5FDopen(paths->onion, H5F_ACC_RDONLY, onion_info.backing_fapl_id, HADDR_UNDEF);
if (NULL == vfile_raw)
TEST_ERROR;
filter.page_size = onion_info.page_size;
filter.n_revisions = 1;
filter.origin_eof = 0;
filter.revisions[0].comment = onion_info.comment;
filter.revisions[0].n_index_entries = (uint64_t)(-1); /* don't care */
filter.revisions[0].revision_num = 0;
filter.revisions[0].parent_revision_num = 0;
filter.revisions[0].logical_eof = (true == with_initial_data) ? a_list_size_s : 0;
if (verify_history_as_expected_onion(vfile_raw, &filter) < 0)
TEST_ERROR;
if (H5FDclose(vfile_raw) < 0)
TEST_ERROR;
vfile_raw = NULL;
/* R/O open the file with Onion VFD; inspect logical file */
vfile_ro = H5FDopen(paths->canon, H5F_ACC_RDONLY, fapl_id, HADDR_UNDEF);
if (NULL == vfile_ro)
TEST_ERROR;
if (true == with_initial_data) {
/* Initial revision contains data */
if (H5FDget_eof(vfile_ro, H5FD_MEM_DRAW) != a_list_size_s)
TEST_ERROR;
if (H5FDget_eoa(vfile_ro, H5FD_MEM_DRAW) != 0)
TEST_ERROR;
if (H5FDset_eoa(vfile_ro, H5FD_MEM_DRAW, a_list_size_s) < 0)
TEST_ERROR;
if (NULL == (buf = malloc(a_list_size_s * 64 * sizeof(char))))
TEST_ERROR;
if (H5FDread(vfile_ro, H5FD_MEM_DRAW, H5P_DEFAULT, 0, a_list_size_s, buf) < 0)
TEST_ERROR;
if (memcmp(a_list_s, buf, a_list_size_s) != 0)
TEST_ERROR;
free(buf);
buf = NULL;
}
else {
/* Initial revision has no data */
if (H5FDget_eoa(vfile_ro, H5FD_MEM_DRAW) != 0)
TEST_ERROR;
if (H5FDget_eof(vfile_ro, H5FD_MEM_DRAW) != 0)
TEST_ERROR;
}
if (H5FDclose(vfile_ro) < 0)
TEST_ERROR;
vfile_ro = NULL;
/*
* CLEANUP
*/
if (H5Pclose(fapl_id) < 0)
TEST_ERROR;
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
onion_filepaths_destroy(paths);
PASSED();
return 0;
error:
if (paths != NULL) {
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
onion_filepaths_destroy(paths);
}
free(buf);
if (vfile_raw != NULL)
(void)H5FDclose(vfile_raw);
if (vfile_rw != NULL)
(void)H5FDclose(vfile_rw);
if (vfile_ro != NULL)
(void)H5FDclose(vfile_ro);
H5E_BEGIN_TRY
{
H5Pclose(fapl_id);
}
H5E_END_TRY
return -1;
} /* end test_create_oniontarget() */
/*-----------------------------------------------------------------------------
*
* Function: test_several_revisions_with_logical_gaps()
*
* Purpose: Test the ability of the Onion VFD to create a valid
* 'onionized' file.
*
* When `truncate_canonical` is false, the canonical file is
* nonexistent on the backing store on onion-creation.
* When `truncate_canonical` is true, a canonical file is created
* on the backing store with known contents, which are to be
* truncated on onion-creation.
*
* Return: PASSED : 0
* FAILED : -1
*
*-----------------------------------------------------------------------------
*/
static int
test_several_revisions_with_logical_gaps(void)
{
const char *basename = "somesuch";
hid_t fapl_id = H5I_INVALID_HID;
struct onion_filepaths *paths = NULL;
H5FD_onion_fapl_info_t onion_info = {
H5FD_ONION_FAPL_INFO_VERSION_CURR,
H5I_INVALID_HID, /* backing_fapl_id */
ONION_TEST_PAGE_SIZE_5, /* page_size */
H5FD_ONION_STORE_TARGET_ONION, /* store_target */
H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST,
0, /* force_write_open */
0, /* flags */
"first" /* comment */
};
H5FD_t *file = NULL; /* Onion virtual file for read/write */
struct expected_history filter;
unsigned char *buf = NULL;
struct revise_revision about[4];
H5FD_onion_history_t history_out;
size_t i = 0;
haddr_t size = 0;
uint64_t a_off = ONION_TEST_PAGE_SIZE_5 + 7; /* 39 */
uint64_t b_off = (((a_off + a_list_size_s + ONION_TEST_PAGE_SIZE_5 - 1) >> 5) << 5) +
ONION_TEST_PAGE_SIZE_5 + 7; /* full page between */
TESTING("multiple revisions with gaps and overlap");
/*********
* SETUP *
*********/
history_out.version = H5FD_ONION_HISTORY_VERSION_CURR;
history_out.n_revisions = 0;
history_out.record_locs = NULL;
if (NULL == (paths = onion_filepaths_init(basename)))
TEST_ERROR;
if ((onion_info.backing_fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
/* Empty first revision */
about[0].truncate = true;
about[0].revision_num = H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST;
about[0].comment = "first";
about[0].n_writes = 0;
about[1].truncate = false;
about[1].revision_num = H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST;
about[1].comment = "second";
about[1].n_writes = 1;
about[1].writes[0].offset = a_off;
about[1].writes[0].size = a_list_size_s;
about[1].writes[0].buf = a_list_s;
about[2].truncate = false;
about[2].revision_num = H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST;
about[2].comment = "third";
about[2].n_writes = 1; /* TODO: several writes */
about[2].writes[0].offset = b_off;
about[2].writes[0].size = b_list_size_s;
about[2].writes[0].buf = b_list_s;
about[3].truncate = false;
about[3].revision_num = H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST;
about[3].comment = "fourth";
about[3].n_writes = 1;
about[3].writes[0].offset = 0;
about[3].writes[0].size = a_list_size_s;
about[3].writes[0].buf = a_list_s;
if (do_onion_open_and_writes(paths->canon, &onion_info, 4, about) < 0)
TEST_ERROR;
/* Inspect logical file */
/* THIS IS THE INITIAL FILE, SHOULD ONLY HAVE 8 BYTES */
onion_info.revision_num = 0;
fapl_id = H5Pcreate(H5P_FILE_ACCESS);
if (H5I_INVALID_HID == fapl_id)
TEST_ERROR;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
file = H5FDopen(paths->canon, H5F_ACC_RDONLY, fapl_id, HADDR_UNDEF);
if (NULL == file)
TEST_ERROR;
if (8 != H5FDget_eof(file, H5FD_MEM_DRAW)) {
printf("\nEOF is not zero, it is: %" PRIuHADDR "\n", H5FDget_eof(file, H5FD_MEM_DRAW));
TEST_ERROR;
}
if (H5FDclose(file) < 0)
TEST_ERROR;
file = NULL;
if (H5Pclose(fapl_id) < 0)
TEST_ERROR;
fapl_id = H5I_INVALID_HID;
/* Empty first revision */
onion_info.revision_num = 1;
fapl_id = H5Pcreate(H5P_FILE_ACCESS);
if (H5I_INVALID_HID == fapl_id)
TEST_ERROR;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
file = H5FDopen(paths->canon, H5F_ACC_RDONLY, fapl_id, HADDR_UNDEF);
if (NULL == file)
TEST_ERROR;
if (0 != H5FDget_eof(file, H5FD_MEM_DRAW)) {
printf("\nEOF is not zero, it is: %" PRIuHADDR "\n", H5FDget_eof(file, H5FD_MEM_DRAW));
TEST_ERROR;
}
if (H5FDclose(file) < 0)
TEST_ERROR;
file = NULL;
if (H5Pclose(fapl_id) < 0)
TEST_ERROR;
fapl_id = H5I_INVALID_HID;
/* One offset block in second revision */
onion_info.revision_num = 2;
fapl_id = H5Pcreate(H5P_FILE_ACCESS);
if (H5I_INVALID_HID == fapl_id)
TEST_ERROR;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
file = H5FDopen(paths->canon, H5F_ACC_RDONLY, fapl_id, HADDR_UNDEF);
if (NULL == file)
TEST_ERROR;
size = a_off + a_list_size_s;
if (size != H5FDget_eof(file, H5FD_MEM_DRAW)) {
printf("\nEOF is not %" PRIuHADDR ", it is: %" PRIuHADDR "\n", size,
H5FDget_eof(file, H5FD_MEM_DRAW));
TEST_ERROR;
}
if (NULL == (buf = malloc(size * sizeof(unsigned char))))
TEST_ERROR;
if (H5FDset_eoa(file, H5FD_MEM_DRAW, size) < 0)
TEST_ERROR;
if (H5FDread(file, H5FD_MEM_DRAW, H5P_DEFAULT, 0, size, buf) < 0)
TEST_ERROR;
for (i = 0; i < a_off; i++) {
if (0 != buf[i])
TEST_ERROR;
}
if (memcmp(buf + a_off, a_list_s, a_list_size_s) != 0)
TEST_ERROR;
free(buf);
buf = NULL;
/* Repeat read at page offset; test possible read offset error */
if (NULL == (buf = malloc(ONION_TEST_PAGE_SIZE_5 * sizeof(unsigned char))))
TEST_ERROR;
if (H5FDread(file, H5FD_MEM_DRAW, H5P_DEFAULT, ONION_TEST_PAGE_SIZE_5, ONION_TEST_PAGE_SIZE_5, buf) < 0)
TEST_ERROR;
size = a_off - ONION_TEST_PAGE_SIZE_5;
for (i = 0; i < size; i++) {
if (0 != buf[i])
TEST_ERROR;
}
if (memcmp(buf + size, a_list_s, ONION_TEST_PAGE_SIZE_5 - size) != 0)
TEST_ERROR;
free(buf);
buf = NULL;
if (H5FDclose(file) < 0)
TEST_ERROR;
file = NULL;
if (H5Pclose(fapl_id) < 0)
TEST_ERROR;
fapl_id = H5I_INVALID_HID;
/* Two offset blocks in third revision */
onion_info.revision_num = 3;
fapl_id = H5Pcreate(H5P_FILE_ACCESS);
if (H5I_INVALID_HID == fapl_id)
TEST_ERROR;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
file = H5FDopen(paths->canon, H5F_ACC_RDONLY, fapl_id, HADDR_UNDEF);
if (NULL == file)
TEST_ERROR;
size = b_off + b_list_size_s;
if (size != H5FDget_eof(file, H5FD_MEM_DRAW))
TEST_ERROR;
if (NULL == (buf = malloc(size * sizeof(unsigned char))))
TEST_ERROR;
if (H5FDset_eoa(file, H5FD_MEM_DRAW, size) < 0)
TEST_ERROR;
if (H5FDread(file, H5FD_MEM_DRAW, H5P_DEFAULT, 0, size, buf) < 0)
TEST_ERROR;
for (i = 0; i < a_off; i++) {
if (0 != buf[i])
TEST_ERROR;
}
if (memcmp(buf + a_off, a_list_s, a_list_size_s) != 0)
TEST_ERROR;
for (i = a_off + a_list_size_s; i < b_off; i++) {
if (0 != buf[i])
TEST_ERROR;
}
if (memcmp(buf + b_off, b_list_s, b_list_size_s) != 0)
TEST_ERROR;
free(buf);
buf = NULL;
if (H5FDclose(file) < 0)
TEST_ERROR;
file = NULL;
if (H5Pclose(fapl_id) < 0)
TEST_ERROR;
fapl_id = H5I_INVALID_HID;
/* From start and partial overwrite in fourth revision */
onion_info.revision_num = 4;
fapl_id = H5Pcreate(H5P_FILE_ACCESS);
if (H5I_INVALID_HID == fapl_id)
TEST_ERROR;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
file = H5FDopen(paths->canon, H5F_ACC_RDONLY, fapl_id, HADDR_UNDEF);
if (NULL == file)
TEST_ERROR;
size = b_off + b_list_size_s;
if (size != H5FDget_eof(file, H5FD_MEM_DRAW))
TEST_ERROR;
buf = (unsigned char *)malloc(sizeof(unsigned char) * size);
if (NULL == buf)
TEST_ERROR;
if (H5FDset_eoa(file, H5FD_MEM_DRAW, size) < 0)
TEST_ERROR;
if (H5FDread(file, H5FD_MEM_DRAW, H5P_DEFAULT, 0, size, buf) < 0)
TEST_ERROR;
if (memcmp(buf, a_list_s, a_list_size_s) != 0)
TEST_ERROR;
if (memcmp(buf + a_list_size_s, a_list_s + a_list_size_s - a_off, a_off) != 0)
TEST_ERROR;
for (i = a_off + a_list_size_s; i < b_off; i++) {
if (0 != buf[i])
TEST_ERROR;
}
if (memcmp(buf + b_off, b_list_s, b_list_size_s) != 0)
TEST_ERROR;
free(buf);
buf = NULL;
if (H5FDclose(file) < 0)
TEST_ERROR;
file = NULL;
if (H5Pclose(fapl_id) < 0)
TEST_ERROR;
fapl_id = H5I_INVALID_HID;
/* No fifth revision */
/* Inspect history construction */
file = H5FDopen(paths->onion, H5F_ACC_RDONLY, onion_info.backing_fapl_id, HADDR_UNDEF);
if (NULL == file)
TEST_ERROR;
filter.page_size = onion_info.page_size;
filter.n_revisions = 4;
filter.origin_eof = 0;
filter.revisions[0].comment = "first";
filter.revisions[0].n_index_entries = 0;
filter.revisions[0].revision_num = 0;
filter.revisions[0].parent_revision_num = 0;
filter.revisions[0].logical_eof = 0;
filter.revisions[1].comment = "second";
filter.revisions[1].n_index_entries = (a_list_size_s + ONION_TEST_PAGE_SIZE_5 - 1) >> 5;
filter.revisions[1].revision_num = 1;
filter.revisions[1].parent_revision_num = 0;
filter.revisions[1].logical_eof = a_off + a_list_size_s;
filter.revisions[2].comment = "third";
filter.revisions[2].n_index_entries =
filter.revisions[1].n_index_entries + ((b_list_size_s + ONION_TEST_PAGE_SIZE_5 - 1) >> 5);
filter.revisions[2].revision_num = 2;
filter.revisions[2].parent_revision_num = 1;
filter.revisions[2].logical_eof = b_off + b_list_size_s;
filter.revisions[3].comment = "fourth";
filter.revisions[3].n_index_entries = filter.revisions[2].n_index_entries + 1;
filter.revisions[3].revision_num = 3;
filter.revisions[3].parent_revision_num = 2;
filter.revisions[3].logical_eof = b_off + b_list_size_s;
if (verify_history_as_expected_onion(file, &filter) < 0)
TEST_ERROR;
if (H5FDclose(file) < 0)
TEST_ERROR;
file = NULL;
/* CLEANUP */
if (H5Pclose(onion_info.backing_fapl_id) < 0)
TEST_ERROR;
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
onion_filepaths_destroy(paths);
PASSED();
return 0;
error:
if (paths != NULL) {
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
onion_filepaths_destroy(paths);
}
free(history_out.record_locs);
free(buf);
if (file != NULL)
(void)H5FDclose(file);
H5E_BEGIN_TRY
{
H5Pclose(fapl_id);
H5Pclose(onion_info.backing_fapl_id);
}
H5E_END_TRY
return -1;
} /* end test_several_revisions_with_logical_gaps() */
/*- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*
* Function: do_onion_open_and_writes
*
* Purpose: Automate the process of creating/opening a file and performing
* a series of writes.
*
* Return: Success : 0
* Failure : -1
*
*- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
*/
// TODO: Modify to create initial file without onion
static int
do_onion_open_and_writes(const char *filename, H5FD_onion_fapl_info_t *onion_info_p, size_t n_ops,
struct revise_revision *about)
{
hid_t fapl_id = H5I_INVALID_HID;
H5FD_t *file = NULL; /* Onion virtual file for read/write */
unsigned char *buf_vfy = NULL;
size_t i = 0;
for (i = 0; i < n_ops; i++) {
size_t j = 0;
unsigned int flags = H5F_ACC_RDWR;
if (i != 0 && about[i].truncate == true)
goto error;
if (true == about[i].truncate)
flags |= H5F_ACC_CREAT | H5F_ACC_TRUNC;
onion_info_p->revision_num = about[i].revision_num;
if (about[i].comment != NULL) {
j = MIN(strlen(about[i].comment), H5FD_ONION_FAPL_INFO_COMMENT_MAX_LEN);
memcpy(onion_info_p->comment, about[i].comment, j);
}
onion_info_p->comment[j] = '\0';
fapl_id = H5Pcreate(H5P_FILE_ACCESS);
if (H5I_INVALID_HID == fapl_id)
goto error;
if (H5Pset_fapl_onion(fapl_id, onion_info_p) < 0)
goto error;
file = H5FDopen(filename, flags, fapl_id, HADDR_UNDEF);
if (NULL == file)
goto error;
for (j = 0; j < about[i].n_writes; j++) {
struct write_info *wi = &about[i].writes[j];
/* Write to file */
if (H5FDget_eoa(file, H5FD_MEM_DRAW) < wi->offset + wi->size &&
H5FDset_eoa(file, H5FD_MEM_DRAW, wi->offset + wi->size) < 0)
TEST_ERROR;
if (H5FDwrite(file, H5FD_MEM_DRAW, H5P_DEFAULT, wi->offset, wi->size, wi->buf) < 0)
TEST_ERROR;
/* Verify write as expected */
if (NULL == (buf_vfy = malloc(wi->size * sizeof(unsigned char))))
TEST_ERROR;
if (H5FDread(file, H5FD_MEM_DRAW, H5P_DEFAULT, wi->offset, wi->size, buf_vfy) < 0)
TEST_ERROR;
if (memcmp(buf_vfy, wi->buf, wi->size) != 0) {
const unsigned char *_buf = wi->buf;
size_t z = 0;
puts("i exp act");
for (z = 0; z < wi->size; z++)
printf("%02zx %c %c\n", z, _buf[z], buf_vfy[z]);
fflush(stdout);
TEST_ERROR;
}
free(buf_vfy);
buf_vfy = NULL;
} /* end for each write */
if (H5FDclose(file) < 0)
goto error;
file = NULL;
if (H5Pclose(fapl_id) < 0)
goto error;
fapl_id = H5I_INVALID_HID;
} /* end for each open-close cycle */
return 0;
error:
if (file != NULL)
(void)H5FDclose(file);
H5E_BEGIN_TRY
{
H5Pclose(fapl_id);
}
H5E_END_TRY
free(buf_vfy);
return -1;
} /* end do_onion_open_and_writes() */
/*-----------------------------------------------------------------------------
*
* Function: test_page_aligned_history_create()
*
* Purpose: Verify that, when specified in FAPL on onionization/creation,
* All history writes are aligned to page-size boundaries.
*
* Return: PASSED : 0
* FAILED : -1
*
*-----------------------------------------------------------------------------
*/
static int
test_page_aligned_history_create(void)
{
const char *basename = "somesuch";
hid_t fapl_id = H5I_INVALID_HID;
struct onion_filepaths *paths = NULL;
H5FD_onion_fapl_info_t onion_info = {
H5FD_ONION_FAPL_INFO_VERSION_CURR,
H5I_INVALID_HID, /* backing_fapl_id */
ONION_TEST_PAGE_SIZE_5, /* page_size */
H5FD_ONION_STORE_TARGET_ONION, /* store_target */
H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST,
0, /* force_write_open */
H5FD_ONION_FAPL_INFO_CREATE_FLAG_ENABLE_PAGE_ALIGNMENT,
"initial commit" /* comment */
};
H5FD_t *file = NULL; /* Onion virtual file for read/write */
unsigned char *buf = NULL;
struct revise_revision about[2];
H5FD_onion_header_t hdr_out;
H5FD_onion_history_t history_out;
size_t i = 0;
uint64_t a_off = b_list_size_s - a_list_size_s;
TESTING("page-aligned history on onion-created file");
/*********
* SETUP *
*********/
hdr_out.version = H5FD_ONION_HEADER_VERSION_CURR;
history_out.version = H5FD_ONION_HISTORY_VERSION_CURR;
history_out.n_revisions = 0;
history_out.record_locs = NULL;
if ((onion_info.backing_fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
if (NULL == (paths = onion_filepaths_init(basename)))
TEST_ERROR;
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
about[0].truncate = true;
about[0].revision_num = H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST;
about[0].comment = "initial_commit";
about[0].n_writes = 1;
about[0].writes[0].offset = 0;
about[0].writes[0].size = b_list_size_s;
about[0].writes[0].buf = b_list_s;
about[1].truncate = false;
about[1].revision_num = H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST;
about[1].comment = "second";
about[1].n_writes = 1;
about[1].writes[0].offset = a_off;
about[1].writes[0].size = a_list_size_s;
about[1].writes[0].buf = a_list_s;
if (do_onion_open_and_writes(paths->canon, &onion_info, 2, about) < 0)
TEST_ERROR;
/* Inspect logical file */
if (NULL == (buf = malloc(b_list_size_s * sizeof(unsigned char))))
TEST_ERROR;
file = H5FDopen(paths->canon, H5F_ACC_RDONLY, fapl_id, HADDR_UNDEF);
if (NULL == file)
TEST_ERROR;
if (b_list_size_s != H5FDget_eof(file, H5FD_MEM_DRAW))
TEST_ERROR;
if (H5FDset_eoa(file, H5FD_MEM_DRAW, b_list_size_s) < 0)
TEST_ERROR;
if (H5FDread(file, H5FD_MEM_DRAW, H5P_DEFAULT, 0, b_list_size_s, buf) < 0)
TEST_ERROR;
if (memcmp(a_list_s, buf + a_off, a_list_size_s) != 0) {
size_t k;
printf("aoff: %" PRIu64 "\n", a_off);
puts("i exp act");
for (k = 0; k < b_list_size_s; k++) {
printf("%3zu:: %c : %c\n", k, (k < a_off) ? ' ' : a_list_s[k - a_off], buf[k]);
}
fflush(stdout);
TEST_ERROR;
}
if (memcmp(b_list_s, buf, a_off) != 0) {
size_t k;
printf("aoff: %" PRIu64 "\n", a_off);
puts("i exp act");
for (k = 0; k < b_list_size_s; k++) {
printf("%3zu:: %c : %c\n", k, (k < a_off) ? b_list_s[k] : ' ', buf[k]);
}
fflush(stdout);
TEST_ERROR;
}
if (H5FDclose(file) < 0)
TEST_ERROR;
file = NULL;
free(buf);
buf = NULL;
/* Inspect history construction */
if (NULL == (file = H5FDopen(paths->onion, H5F_ACC_RDONLY, onion_info.backing_fapl_id, HADDR_UNDEF)))
TEST_ERROR;
if (H5FDset_eoa(file, H5FD_MEM_DRAW, H5FDget_eof(file, H5FD_MEM_DRAW)) < 0)
TEST_ERROR;
if (NULL == (buf = malloc(H5FD_ONION_ENCODED_SIZE_HEADER)))
TEST_ERROR;
if (H5FDread(file, H5FD_MEM_DRAW, H5P_DEFAULT, 0, H5FD_ONION_ENCODED_SIZE_HEADER, buf) < 0)
TEST_ERROR;
if (H5FD__onion_header_decode(buf, &hdr_out) != H5FD_ONION_ENCODED_SIZE_HEADER)
TEST_ERROR;
if (hdr_out.history_addr & ((1 << 5) - 1)) /* 5::PAGE_SIZE_5 */
TEST_ERROR;
free(buf);
buf = NULL;
if (NULL == (buf = malloc(hdr_out.history_size)))
TEST_ERROR;
if (H5FDread(file, H5FD_MEM_DRAW, H5P_DEFAULT, hdr_out.history_addr, hdr_out.history_size, buf) < 0)
TEST_ERROR;
if (H5FD__onion_history_decode(buf, &history_out) != hdr_out.history_size)
TEST_ERROR;
if (history_out.n_revisions != 2)
TEST_ERROR;
history_out.record_locs = calloc(history_out.n_revisions, sizeof(H5FD_onion_record_loc_t));
if (NULL == history_out.record_locs)
TEST_ERROR;
if (H5FD__onion_history_decode(buf, &history_out) != hdr_out.history_size)
TEST_ERROR;
free(buf);
buf = NULL;
for (i = 0; i < history_out.n_revisions; i++) {
H5FD_onion_record_loc_t *rloc = &history_out.record_locs[i];
if (rloc->phys_addr & ((1 << 5) - 1)) /* 5::PAGE_SIZE_5 */
TEST_ERROR;
/* TODO: check phys_addr of each page entry? */
}
free(history_out.record_locs);
history_out.record_locs = NULL;
if (H5FDclose(file) < 0)
TEST_ERROR;
file = NULL;
/* CLEANUP */
if (H5Pclose(onion_info.backing_fapl_id) < 0)
TEST_ERROR;
if (H5Pclose(fapl_id) < 0)
TEST_ERROR;
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
onion_filepaths_destroy(paths);
free(buf);
PASSED();
return 0;
error:
if (paths != NULL) {
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
onion_filepaths_destroy(paths);
}
free(history_out.record_locs);
free(buf);
if (file != NULL)
(void)H5FDclose(file);
H5E_BEGIN_TRY
{
H5Pclose(fapl_id);
H5Pclose(onion_info.backing_fapl_id);
}
H5E_END_TRY
return -1;
} /* end test_page_aligned_history_create() */
/*-----------------------------------------------------------------------------
* Function: test_integration_create()
*
* Purpose: Create and make multiple revisions in an HDF5 file.
*
* Return: PASSED : 0
* FAILED : -1
*-----------------------------------------------------------------------------
*/
static int
test_integration_create(void)
{
const char *basename = "integration_2d.h5";
hid_t fapl_id = H5I_INVALID_HID;
hid_t file_id = H5I_INVALID_HID;
hid_t file = H5I_INVALID_HID;
hid_t space = H5I_INVALID_HID;
hid_t dset = H5I_INVALID_HID;
hid_t dcpl = H5I_INVALID_HID;
struct onion_filepaths *paths = NULL;
H5FD_onion_fapl_info_t onion_info = {
H5FD_ONION_FAPL_INFO_VERSION_CURR,
H5I_INVALID_HID, /* backing_fapl_id */
ONION_TEST_PAGE_SIZE_5, /* page_size */
H5FD_ONION_STORE_TARGET_ONION, /* store_target */
H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST,
0, /* force_write_open */
0, /* creation flags, was H5FD_ONION_FAPL_INFO_CREATE_FLAG_ENABLE_PAGE_ALIGNMENT */
"initial commit" /* comment */
};
hsize_t dims[2] = {128, 256};
hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
hsize_t chunk[2] = {4, 4};
int fillval;
struct {
int arr[128][256];
} *wdata = NULL;
struct {
int arr[128][256];
} *rdata = NULL;
struct {
int arr[128][256];
} *dset_data = NULL;
TESTING("onion-created two dimensional HDF5 file with revisions");
/* SETUP */
if (NULL == (wdata = calloc(1, sizeof(*wdata))))
TEST_ERROR;
if (NULL == (rdata = calloc(1, sizeof(*rdata))))
TEST_ERROR;
if (NULL == (dset_data = calloc(1, sizeof(*dset_data))))
TEST_ERROR;
if ((onion_info.backing_fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
if (NULL == (paths = onion_filepaths_init(basename)))
TEST_ERROR;
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
/*----------------------------------------------------------------------
* Create the skeleton file (create the file without Onion VFD)
*----------------------------------------------------------------------
*/
/* Initialize data */
for (int i = 0; i < 128; i++)
for (int j = 0; j < 256; j++)
wdata->arr[i][j] = i * j - j;
/* Create a new file using the default properties */
if ((file = H5Fcreate(paths->canon, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Create dataspace with unlimited dimensions */
if ((space = H5Screate_simple(2, dims, maxdims)) < 0)
TEST_ERROR;
/* Create the dataset creation property list, and set the chunk
* size
*/
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
TEST_ERROR;
if (H5Pset_chunk(dcpl, 2, chunk) < 0)
TEST_ERROR;
/* Set the fill value for the dataset */
fillval = 99;
if (H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fillval) < 0)
TEST_ERROR;
/* Set the allocation time to "early". This way we can be sure
* that reading from the dataset immediately after creation will
* return the fill value.
*/
if (H5Pset_alloc_time(dcpl, H5D_ALLOC_TIME_EARLY) < 0)
TEST_ERROR;
/* Create the dataset using the dataset creation property list */
if ((dset = H5Dcreate2(file, "DS1", H5T_STD_I32LE, space, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Write the data to the dataset */
if (H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata) < 0)
TEST_ERROR;
/* Close and release resources */
if (H5Pclose(dcpl) < 0)
TEST_ERROR;
if (H5Dclose(dset) < 0)
TEST_ERROR;
if (H5Sclose(space) < 0)
TEST_ERROR;
if (H5Fclose(file) < 0)
TEST_ERROR;
/*----------------------------------------------------------------------
* First revision: open the file with Onion VFD and change the data
*----------------------------------------------------------------------
*/
if ((file_id = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
if ((dset = H5Dopen2(file_id, "DS1", H5P_DEFAULT)) < 0)
TEST_ERROR;
for (int i = 0; i < 128; i++)
for (int j = 0; j < 256; j++)
dset_data->arr[i][j] = i * 6 + j + 1;
if (H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset_data) < 0)
TEST_ERROR;
if (H5Dclose(dset) < 0)
TEST_ERROR;
dset = H5I_INVALID_HID;
if (H5Fclose(file_id) < 0)
TEST_ERROR;
file_id = H5I_INVALID_HID;
/*----------------------------------------------------------------------
* Second revision: open the file with Onion VFD and change the data
*----------------------------------------------------------------------
*/
if ((file_id = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
if ((dset = H5Dopen2(file_id, "DS1", H5P_DEFAULT)) < 0)
TEST_ERROR;
for (int i = 0; i < 128; i++)
for (int j = 0; j < 256; j++)
dset_data->arr[i][j] = i * 3 + j + 5;
if (H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset_data) < 0)
TEST_ERROR;
/* CLEANUP */
if (H5Dclose(dset) < 0)
TEST_ERROR;
dset = H5I_INVALID_HID;
if (H5Fclose(file_id) < 0)
TEST_ERROR;
file_id = H5I_INVALID_HID;
if (H5Pclose(fapl_id) < 0)
TEST_ERROR;
fapl_id = H5I_INVALID_HID;
/*----------------------------------------------------------------------
* Start to verify the revision
*----------------------------------------------------------------------
*/
/*----------------------------------------------------------------------
* Verify the original file
*----------------------------------------------------------------------
*/
onion_info.revision_num = 0;
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
if ((file_id = H5Fopen(paths->canon, H5F_ACC_RDONLY, fapl_id)) < 0)
TEST_ERROR;
if ((dset = H5Dopen2(file_id, "DS1", H5P_DEFAULT)) < 0)
TEST_ERROR;
if (H5Dread(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata) < 0)
TEST_ERROR;
for (int i = 0; i < 128; i++) {
for (int j = 0; j < 256; j++) {
int expected = i * j - j;
if (rdata->arr[i][j] != expected) {
printf("ERROR!!! Expected: %d, Got: %d\n", expected, rdata->arr[i][j]);
fflush(stdout);
TEST_ERROR;
}
}
}
if (H5Dclose(dset) < 0)
TEST_ERROR;
dset = H5I_INVALID_HID;
if (H5Fclose(file_id) < 0)
TEST_ERROR;
file_id = H5I_INVALID_HID;
if (H5Pclose(fapl_id) < 0)
TEST_ERROR;
fapl_id = H5I_INVALID_HID;
/*----------------------------------------------------------------------
* Verify the first revision
*----------------------------------------------------------------------
*/
onion_info.revision_num = 1;
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
if ((file_id = H5Fopen(paths->canon, H5F_ACC_RDONLY, fapl_id)) < 0)
TEST_ERROR;
if ((dset = H5Dopen2(file_id, "DS1", H5P_DEFAULT)) < 0)
TEST_ERROR;
if (H5Dread(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata) < 0)
TEST_ERROR;
for (int i = 0; i < 128; i++) {
for (int j = 0; j < 256; j++) {
int expected = i * 6 + j + 1;
if (rdata->arr[i][j] != expected) {
printf("ERROR!!! Expected: %d, Got: %d\n", expected, rdata->arr[i][j]);
fflush(stdout);
TEST_ERROR;
}
}
}
if (H5Dclose(dset) < 0)
TEST_ERROR;
dset = H5I_INVALID_HID;
if (H5Fclose(file_id) < 0)
TEST_ERROR;
file_id = H5I_INVALID_HID;
if (H5Pclose(fapl_id) < 0)
TEST_ERROR;
fapl_id = H5I_INVALID_HID;
/*----------------------------------------------------------------------
* Verify the second revision
*----------------------------------------------------------------------
*/
onion_info.revision_num = 2;
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
if ((file_id = H5Fopen(paths->canon, H5F_ACC_RDONLY, fapl_id)) < 0)
TEST_ERROR;
if ((dset = H5Dopen2(file_id, "DS1", H5P_DEFAULT)) < 0)
TEST_ERROR;
if (H5Dread(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata) < 0)
TEST_ERROR;
for (int i = 0; i < 128; i++) {
for (int j = 0; j < 256; j++) {
int expected = i * 3 + j + 5;
if (rdata->arr[i][j] != expected) {
printf("ERROR!!! Expected: %d, Got: %d\n", expected, rdata->arr[i][j]);
fflush(stdout);
TEST_ERROR;
}
else {
fflush(stdout);
}
}
}
if (H5Dclose(dset) < 0)
TEST_ERROR;
if (H5Fclose(file_id) < 0)
TEST_ERROR;
if (H5Pclose(fapl_id) < 0)
TEST_ERROR;
if (H5Pclose(onion_info.backing_fapl_id) < 0)
TEST_ERROR;
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
onion_filepaths_destroy(paths);
free(wdata);
free(rdata);
free(dset_data);
PASSED();
return 0;
error:
if (paths != NULL) {
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
onion_filepaths_destroy(paths);
}
H5E_BEGIN_TRY
{
H5Dclose(dset);
H5Fclose(file_id);
H5Pclose(fapl_id);
H5Pclose(onion_info.backing_fapl_id);
}
H5E_END_TRY
free(wdata);
free(rdata);
free(dset_data);
return -1;
} /* end test_integration_create() */
static int
test_integration_create_simple(void)
{
const char *basename = "integration_1d.h5";
hid_t fapl_id = H5I_INVALID_HID;
struct onion_filepaths *paths = NULL;
H5FD_onion_fapl_info_t onion_info = {
H5FD_ONION_FAPL_INFO_VERSION_CURR,
H5I_INVALID_HID, /* backing_fapl_id */
ONION_TEST_PAGE_SIZE_5, /* page_size */
H5FD_ONION_STORE_TARGET_ONION, /* store_target */
H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST,
0, /* force_write_open */
0, /* creation flags, was H5FD_ONION_FAPL_INFO_CREATE_FLAG_ENABLE_PAGE_ALIGNMENT */
"initial commit" /* comment */
};
hid_t file_id = H5I_INVALID_HID;
hid_t file = H5I_INVALID_HID;
hid_t space = H5I_INVALID_HID;
hid_t dset = H5I_INVALID_HID;
hid_t dcpl = H5I_INVALID_HID;
hsize_t dims[2] = {1, ONE_DIM_SIZE};
hsize_t maxdims[2] = {1, ONE_DIM_SIZE};
int fillval;
struct {
int arr[ONE_DIM_SIZE];
} *wdata = NULL;
struct {
int arr[ONE_DIM_SIZE];
} *rdata = NULL;
struct {
int arr[ONE_DIM_SIZE];
} *dset_data = NULL;
TESTING("onion-created one-dimensional HDF5 file with revisions");
/* Setup */
if (NULL == (wdata = calloc(1, sizeof(*wdata))))
TEST_ERROR;
if (NULL == (rdata = calloc(1, sizeof(*rdata))))
TEST_ERROR;
if (NULL == (dset_data = calloc(1, sizeof(*dset_data))))
TEST_ERROR;
if ((onion_info.backing_fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
if (NULL == (paths = onion_filepaths_init(basename)))
TEST_ERROR;
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
/*----------------------------------------------------------------------
* Create the skeleton file (create the file without Onion VFD)
*----------------------------------------------------------------------
*/
/* Initialize data */
for (int i = 0; i < ONE_DIM_SIZE; i++)
wdata->arr[i] = i;
/* Create a new file using the default properties */
if ((file = H5Fcreate(paths->canon, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Create dataspace with unlimited dimensions*/
if ((space = H5Screate_simple(2, dims, maxdims)) < 0)
TEST_ERROR;
/* Create the dataset creation property list */
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
TEST_ERROR;
/* Set the fill value for the dataset */
fillval = 99;
if (H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fillval) < 0)
TEST_ERROR;
/* Set the allocation time to "early". This way we can be sure
* that reading from the dataset immediately after creation will
* return the fill value.
*/
if (H5Pset_alloc_time(dcpl, H5D_ALLOC_TIME_EARLY) < 0)
TEST_ERROR;
/* Create the dataset using the dataset creation property list */
if ((dset = H5Dcreate2(file, "DS1", H5T_STD_I32LE, space, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Write the data to the dataset */
if (H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata) < 0)
TEST_ERROR;
/* Close everything */
if (H5Pclose(dcpl) < 0)
TEST_ERROR;
if (H5Dclose(dset) < 0)
TEST_ERROR;
if (H5Sclose(space) < 0)
TEST_ERROR;
if (H5Fclose(file) < 0)
TEST_ERROR;
/*----------------------------------------------------------------------
* First revision: open the file with Onion VFD and change the data
*----------------------------------------------------------------------
*/
if ((file_id = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
if ((dset = H5Dopen2(file_id, "DS1", H5P_DEFAULT)) < 0)
TEST_ERROR;
for (int i = 0; i < ONE_DIM_SIZE; i++)
dset_data->arr[i] = i + ONE_DIM_SIZE;
if (H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset_data) < 0)
TEST_ERROR;
if (H5Dclose(dset) < 0)
TEST_ERROR;
dset = H5I_INVALID_HID;
if (H5Fclose(file_id) < 0)
TEST_ERROR;
file_id = H5I_INVALID_HID;
/*----------------------------------------------------------------------
* Second revision: open the file with Onion VFD and change the data
*----------------------------------------------------------------------
*/
if ((file_id = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
if ((dset = H5Dopen2(file_id, "DS1", H5P_DEFAULT)) < 0)
TEST_ERROR;
for (int i = 0; i < ONE_DIM_SIZE; i++)
dset_data->arr[i] = i + 2048;
if (H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset_data) < 0)
TEST_ERROR;
/* CLEANUP */
if (H5Dclose(dset) < 0)
TEST_ERROR;
dset = H5I_INVALID_HID;
if (H5Fclose(file_id) < 0)
TEST_ERROR;
file_id = H5I_INVALID_HID;
/*----------------------------------------------------------------------
* Third revision: open the file with Onion VFD and change the data
*----------------------------------------------------------------------
*/
if ((file_id = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
if ((dset = H5Dopen2(file_id, "DS1", H5P_DEFAULT)) < 0)
TEST_ERROR;
for (int i = 0; i < ONE_DIM_SIZE; i += 20)
dset_data->arr[i] = i + 3072;
if (H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset_data) < 0)
TEST_ERROR;
/* CLEANUP */
if (H5Dclose(dset) < 0)
TEST_ERROR;
dset = H5I_INVALID_HID;
if (H5Fclose(file_id) < 0)
TEST_ERROR;
file_id = H5I_INVALID_HID;
if (H5Pclose(fapl_id) < 0)
TEST_ERROR;
fapl_id = H5I_INVALID_HID;
/*----------------------------------------------------------------------
* Start to verify the revision
*----------------------------------------------------------------------
*/
/*----------------------------------------------------------------------
* Verify the second revision
*----------------------------------------------------------------------
*/
onion_info.revision_num = 2;
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
if ((file_id = H5Fopen(paths->canon, H5F_ACC_RDONLY, fapl_id)) < 0)
TEST_ERROR;
if ((dset = H5Dopen2(file_id, "DS1", H5P_DEFAULT)) < 0)
TEST_ERROR;
if (H5Dread(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata) < 0)
TEST_ERROR;
for (int i = 0; i < ONE_DIM_SIZE; i += 20) {
int expected = i + 2048;
if (rdata->arr[i] != expected) {
printf("ERROR!!! Expected: %d, Got: %d\n", expected, rdata->arr[i]);
TEST_ERROR;
}
}
/* Close everything */
if (H5Dclose(dset) < 0)
TEST_ERROR;
if (H5Fclose(file_id) < 0)
TEST_ERROR;
if (H5Pclose(fapl_id) < 0)
TEST_ERROR;
if (H5Pclose(onion_info.backing_fapl_id) < 0)
TEST_ERROR;
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
onion_filepaths_destroy(paths);
free(wdata);
free(rdata);
free(dset_data);
PASSED();
return 0;
error:
if (paths != NULL) {
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
onion_filepaths_destroy(paths);
}
H5E_BEGIN_TRY
{
H5Dclose(dset);
H5Fclose(file_id);
H5Pclose(fapl_id);
H5Pclose(onion_info.backing_fapl_id);
}
H5E_END_TRY
free(wdata);
free(rdata);
free(dset_data);
return -1;
} /* end test_integration_create_simple() */
static int
test_integration_create_delete_objects(void)
{
const char *basename = "integration_objs.h5";
hid_t fapl_id = H5I_INVALID_HID;
struct onion_filepaths *paths = NULL;
H5FD_onion_fapl_info_t onion_info = {
H5FD_ONION_FAPL_INFO_VERSION_CURR,
H5I_INVALID_HID, /* backing_fapl_id */
ONION_TEST_PAGE_SIZE_5, /* page_size */
H5FD_ONION_STORE_TARGET_ONION, /* store_target */
H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST,
0, /* force_write_open */
0, /* creation flags, was H5FD_ONION_FAPL_INFO_CREATE_FLAG_ENABLE_PAGE_ALIGNMENT */
"initial commit" /* comment */
};
hid_t group_id = H5I_INVALID_HID;
hid_t attr_space_id = H5I_INVALID_HID;
hid_t attr_id = H5I_INVALID_HID;
hsize_t attr_dim[1] = {4};
hid_t file = H5I_INVALID_HID;
hid_t space = H5I_INVALID_HID;
hid_t dset = H5I_INVALID_HID;
hid_t dcpl = H5I_INVALID_HID;
hsize_t dims[2] = {4, 4}, maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED}, chunk[2] = {4, 4};
int wdata[4][4], /* Write buffer */
fillval, i, j;
TESTING("onion-created HDF5 file with revisions testing addition and deletion of objects");
/* Set up */
if ((onion_info.backing_fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
if (NULL == (paths = onion_filepaths_init(basename)))
TEST_ERROR;
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
/*----------------------------------------------------------------------
* Create the skeleton file (create the file without Onion VFD)
*----------------------------------------------------------------------
*/
/* Initialize data */
for (i = 0; i < 4; i++)
for (j = 0; j < 4; j++)
wdata[i][j] = i + j;
/* Create a new file using the default properties */
if ((file = H5Fcreate(paths->canon, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Create dataspace with unlimited dimensions */
if ((space = H5Screate_simple(2, dims, maxdims)) < 0)
TEST_ERROR;
/* Create the dataset creation property list, and set the chunk
* size
*/
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
TEST_ERROR;
if (H5Pset_chunk(dcpl, 2, chunk) < 0)
TEST_ERROR;
/* Set the fill value for the dataset */
fillval = 99;
if (H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fillval) < 0)
TEST_ERROR;
/* Set the allocation time to "early". This way we can be sure
* that reading from the dataset immediately after creation will
* return the fill value.
*/
if (H5Pset_alloc_time(dcpl, H5D_ALLOC_TIME_EARLY) < 0)
TEST_ERROR;
/* Create the dataset using the dataset creation property list */
if ((dset = H5Dcreate2(file, "DS1", H5T_STD_I32LE, space, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Write the data to the dataset */
if (H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata) < 0)
TEST_ERROR;
if (H5Dclose(dset) < 0)
TEST_ERROR;
if (H5Fclose(file) < 0)
TEST_ERROR;
/*----------------------------------------------------------------------
* First revision: open the file with Onion VFD and add a dataset (DS2) to the file
*----------------------------------------------------------------------
*/
if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
/* Create the dataset using the dataset creation property list */
if ((dset = H5Dcreate2(file, "DS2", H5T_STD_I32LE, space, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Write the data to the dataset */
if (H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata) < 0)
TEST_ERROR;
if (H5Dclose(dset) < 0)
TEST_ERROR;
dset = H5I_INVALID_HID;
if (H5Fclose(file) < 0)
TEST_ERROR;
file = H5I_INVALID_HID;
/*----------------------------------------------------------------------
* Second revision: open the file with Onion VFD and remove the dataset (DS2),
* which was added during the first revision.
*----------------------------------------------------------------------
*/
if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
if (H5Ldelete(file, "DS2", H5P_DEFAULT) < 0)
TEST_ERROR;
if (H5Fclose(file) < 0)
TEST_ERROR;
file = H5I_INVALID_HID;
/*----------------------------------------------------------------------
* Third revision: open the file with Onion VFD and add an attribute to the file
*----------------------------------------------------------------------
*/
if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
/* Create dataspace for attribute */
if ((attr_space_id = H5Screate_simple(1, attr_dim, NULL)) < 0)
TEST_ERROR;
if ((attr_id =
H5Acreate2(file, "file_attribute", H5T_STD_I32LE, attr_space_id, H5P_DEFAULT, H5P_DEFAULT)) < 0)
TEST_ERROR;
if (H5Sclose(attr_space_id) < 0)
TEST_ERROR;
if (H5Aclose(attr_id) < 0)
TEST_ERROR;
if (H5Fclose(file) < 0)
TEST_ERROR;
file = H5I_INVALID_HID;
/*----------------------------------------------------------------------
* Fourth revision: open the file with Onion VFD and delete the attribute
*----------------------------------------------------------------------
*/
if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
if (H5Adelete(file, "file_attribute") < 0)
TEST_ERROR;
if (H5Fclose(file) < 0)
TEST_ERROR;
file = H5I_INVALID_HID;
/*----------------------------------------------------------------------
* Fifth revision: open the file with Onion VFD and add a group to the file
*----------------------------------------------------------------------
*/
if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
if ((group_id = H5Gcreate2(file, "new_group", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
TEST_ERROR;
if (H5Gclose(group_id) < 0)
TEST_ERROR;
if (H5Fclose(file) < 0)
TEST_ERROR;
file = H5I_INVALID_HID;
/*----------------------------------------------------------------------
* Sixth revision: open the file with Onion VFD and delete the newly added group
*----------------------------------------------------------------------
*/
if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
if (H5Ldelete(file, "new_group", H5P_DEFAULT) < 0)
TEST_ERROR;
if (H5Fclose(file) < 0)
TEST_ERROR;
file = H5I_INVALID_HID;
/*----------------------------------------------------------------------
* Start to verify the revision
*----------------------------------------------------------------------
*/
/*----------------------------------------------------------------------
* Verify the first revision: it should have the second dataset (DS2)
*----------------------------------------------------------------------
*/
onion_info.revision_num = 1;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
/* The second dataset (DS2) should exist */
if (H5Lexists(file, "DS2", H5P_DEFAULT) <= 0)
TEST_ERROR;
if (H5Fclose(file) < 0)
TEST_ERROR;
file = H5I_INVALID_HID;
/*------------------------------------------------------------------------
* Verify the second revision: the second dataset (DS2) should be removed
*------------------------------------------------------------------------
*/
onion_info.revision_num = 2;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
/* The second dataset (DS2) shouldn't exist */
if (H5Lexists(file, "DS2", H5P_DEFAULT) > 0)
TEST_ERROR;
if (H5Fclose(file) < 0)
TEST_ERROR;
file = H5I_INVALID_HID;
/*-------------------------------------------------------------------------
* Verify the third revision: the file attribute (file_attribute) should exist
*-------------------------------------------------------------------------
*/
onion_info.revision_num = 3;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
/* The file attribute should exist */
if (H5Aexists(file, "file_attribute") <= 0)
TEST_ERROR;
if (H5Fclose(file) < 0)
TEST_ERROR;
file = H5I_INVALID_HID;
/*-------------------------------------------------------------------------
* Verify the fourth revision: the file attribute (file_attribute) should be removed
*-------------------------------------------------------------------------
*/
onion_info.revision_num = 4;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
/* The file attribute should be removed */
if (H5Aexists(file, "file_attribute") > 0)
TEST_ERROR;
if (H5Fclose(file) < 0)
TEST_ERROR;
file = H5I_INVALID_HID;
/*-------------------------------------------------------------------------
* Verify the fifth revision: the group (new_group) should exist
*-------------------------------------------------------------------------
*/
onion_info.revision_num = 5;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
/* The new group should exist */
if (H5Lexists(file, "new_group", H5P_DEFAULT) <= 0)
TEST_ERROR;
if (H5Fclose(file) < 0)
TEST_ERROR;
file = H5I_INVALID_HID;
/*-------------------------------------------------------------------------
* Verify the sixth revision: the group (new_group) should be removed
*-------------------------------------------------------------------------
*/
onion_info.revision_num = 6;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
/* The new group should exist */
if (H5Lexists(file, "new_group", H5P_DEFAULT) > 0)
TEST_ERROR;
/* Close everything */
if (H5Fclose(file) < 0)
TEST_ERROR;
if (H5Pclose(fapl_id) < 0)
TEST_ERROR;
if (H5Pclose(dcpl) < 0)
TEST_ERROR;
if (H5Sclose(space) < 0)
TEST_ERROR;
if (H5Pclose(onion_info.backing_fapl_id) < 0)
TEST_ERROR;
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
onion_filepaths_destroy(paths);
PASSED();
return 0;
error:
if (paths != NULL) {
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
onion_filepaths_destroy(paths);
}
H5E_BEGIN_TRY
{
H5Dclose(dset);
H5Fclose(file);
H5Pclose(fapl_id);
H5Sclose(space);
H5Pclose(onion_info.backing_fapl_id);
}
H5E_END_TRY
return -1;
} /* end test_integration_create_delete_objects */
static int
test_integration_dset_extension(void)
{
const char *basename = "integration_dset_ext.h5";
hid_t fapl_id = H5I_INVALID_HID;
struct onion_filepaths *paths = NULL;
H5FD_onion_fapl_info_t onion_info = {
H5FD_ONION_FAPL_INFO_VERSION_CURR,
H5I_INVALID_HID, /* backing_fapl_id */
ONION_TEST_PAGE_SIZE_5, /* page_size */
H5FD_ONION_STORE_TARGET_ONION, /* store_target */
H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST,
0, /* force_write_open */
0, /* creation flags, was H5FD_ONION_FAPL_INFO_CREATE_FLAG_ENABLE_PAGE_ALIGNMENT */
"initial commit" /* comment */
};
hid_t file = H5I_INVALID_HID;
hid_t space = H5I_INVALID_HID;
hid_t dset_space = H5I_INVALID_HID;
hid_t dset = H5I_INVALID_HID;
hid_t dcpl = H5I_INVALID_HID;
hsize_t dims[2] = {4, 4};
hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
hsize_t chunk[2] = {4, 4};
hsize_t size[2];
hsize_t offset[2];
int wdata[4][4]; /* Write buffer */
int fillval;
int rdata[4][4]; /* Read buffer */
TESTING("onion-created HDF5 file with revisions testing dataset extension");
/* Setup */
if ((onion_info.backing_fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
if (NULL == (paths = onion_filepaths_init(basename)))
TEST_ERROR;
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
/*----------------------------------------------------------------------
* Create the skeleton file (create the file without Onion VFD)
*----------------------------------------------------------------------
*/
/* Initialize data */
for (int i = 0; i < 4; i++)
for (int j = 0; j < 4; j++)
wdata[i][j] = i + j;
/* Create a new file using the default properties */
if ((file = H5Fcreate(paths->canon, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Create dataspace with unlimited dimensions*/
if ((space = H5Screate_simple(2, dims, maxdims)) < 0)
TEST_ERROR;
/* Create the dataset creation property list, and set the chunk
* size
*/
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
TEST_ERROR;
if (H5Pset_chunk(dcpl, 2, chunk) < 0)
TEST_ERROR;
/* Set the fill value for the dataset */
fillval = 99;
if (H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fillval) < 0)
TEST_ERROR;
/* Set the allocation time to "early". This way we can be sure
* that reading from the dataset immediately after creation will
* return the fill value.
*/
if (H5Pset_alloc_time(dcpl, H5D_ALLOC_TIME_EARLY) < 0)
TEST_ERROR;
/* Create the dataset using the dataset creation property list */
if ((dset = H5Dcreate2(file, "DS1", H5T_STD_I32LE, space, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Write the data to the dataset */
if (H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata) < 0)
TEST_ERROR;
if (H5Dclose(dset) < 0)
TEST_ERROR;
if (H5Fclose(file) < 0)
TEST_ERROR;
/*----------------------------------------------------------------------
* First revision: open the file with Onion VFD and extend the dataset
*----------------------------------------------------------------------
*/
if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
/* Open the dataset */
if ((dset = H5Dopen2(file, "DS1", H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Extend the dataset and double the rows */
size[0] = 2 * dims[0];
size[1] = dims[1];
if (H5Dset_extent(dset, size) < 0)
TEST_ERROR;
if ((dset_space = H5Dget_space(dset)) < 0)
TEST_ERROR;
offset[0] = dims[0];
offset[1] = 0;
if (H5Sselect_hyperslab(dset_space, H5S_SELECT_SET, offset, NULL, dims, NULL) < 0)
TEST_ERROR;
/* Write the data to the dataset. */
if (H5Dwrite(dset, H5T_NATIVE_INT, space, dset_space, H5P_DEFAULT, wdata) < 0)
TEST_ERROR;
if (H5Sclose(dset_space) < 0)
TEST_ERROR;
if (H5Dclose(dset) < 0)
TEST_ERROR;
dset = H5I_INVALID_HID;
if (H5Fclose(file) < 0)
TEST_ERROR;
file = H5I_INVALID_HID;
/*----------------------------------------------------------------------
* Second revision: open the file with Onion VFD and shrink the dataset
*----------------------------------------------------------------------
*/
if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
/* Open the dataset */
if ((dset = H5Dopen2(file, "DS1", H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Extend the dataset and shrink back the size */
if (H5Dset_extent(dset, dims) < 0)
TEST_ERROR;
if (H5Dclose(dset) < 0)
TEST_ERROR;
dset = H5I_INVALID_HID;
if (H5Fclose(file) < 0)
TEST_ERROR;
file = H5I_INVALID_HID;
/*----------------------------------------------------------------------
* Start to verify the revision
*----------------------------------------------------------------------
*/
/*----------------------------------------------------------------------
* Verify the first revision: it should have the extended data
*----------------------------------------------------------------------
*/
onion_info.revision_num = 1;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
/* Open the dataset */
if ((dset = H5Dopen2(file, "DS1", H5P_DEFAULT)) < 0)
TEST_ERROR;
if ((dset_space = H5Dget_space(dset)) < 0)
TEST_ERROR;
offset[0] = dims[0];
offset[1] = 0;
if (H5Sselect_hyperslab(dset_space, H5S_SELECT_SET, offset, NULL, dims, NULL) < 0)
TEST_ERROR;
if (H5Dread(dset, H5T_NATIVE_INT, space, dset_space, H5P_DEFAULT, rdata) < 0)
TEST_ERROR;
for (int i = 0; i < 4; i++)
for (int j = 0; j < 4; j++)
if (rdata[i][j] != wdata[i][j])
TEST_ERROR;
if (H5Dclose(dset) < 0)
TEST_ERROR;
dset = H5I_INVALID_HID;
if (H5Fclose(file) < 0)
TEST_ERROR;
file = H5I_INVALID_HID;
/*----------------------------------------------------------------------
* Verify the second revision: it should have the original data
*----------------------------------------------------------------------
*/
onion_info.revision_num = 2;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
/* Open the dataset */
dset = H5Dopen2(file, "DS1", H5P_DEFAULT);
if ((dset_space = H5Dget_space(dset)) < 0)
TEST_ERROR;
if (H5Dread(dset, H5T_NATIVE_INT, space, dset_space, H5P_DEFAULT, rdata) < 0)
TEST_ERROR;
for (int i = 0; i < 4; i++)
for (int j = 0; j < 4; j++)
if (rdata[i][j] != wdata[i][j])
TEST_ERROR;
if (H5Dclose(dset) < 0)
TEST_ERROR;
dset = H5I_INVALID_HID;
if (H5Fclose(file) < 0)
TEST_ERROR;
file = H5I_INVALID_HID;
/* Close and release resources. */
if (H5Pclose(fapl_id) < 0)
TEST_ERROR;
if (H5Pclose(dcpl) < 0)
TEST_ERROR;
if (H5Sclose(space) < 0)
TEST_ERROR;
if (H5Pclose(onion_info.backing_fapl_id) < 0)
TEST_ERROR;
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
onion_filepaths_destroy(paths);
PASSED();
return 0;
error:
if (paths != NULL) {
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
onion_filepaths_destroy(paths);
}
H5E_BEGIN_TRY
{
H5Dclose(dset);
H5Fclose(file);
H5Pclose(fapl_id);
H5Pclose(onion_info.backing_fapl_id);
}
H5E_END_TRY
return -1;
} /* end test_integration_dset_extension */
static int
test_integration_ctl(void)
{
const char *basename = "integration_ctl.h5";
hid_t file = H5I_INVALID_HID;
hid_t space = H5I_INVALID_HID;
hid_t dset = H5I_INVALID_HID;
hid_t dcpl = H5I_INVALID_HID;
hid_t fapl_id = H5I_INVALID_HID;
hsize_t dims[2] = {4, 4};
hsize_t maxdims[2] = {H5S_UNLIMITED, H5S_UNLIMITED};
hsize_t chunk[2] = {4, 4};
int wdata[4][4]; /* Write buffer */
int fillval;
struct onion_filepaths *paths = NULL;
H5FD_onion_fapl_info_t onion_info = {
H5FD_ONION_FAPL_INFO_VERSION_CURR,
H5I_INVALID_HID, /* backing_fapl_id */
ONION_TEST_PAGE_SIZE_5, /* page_size */
H5FD_ONION_STORE_TARGET_ONION, /* store_target */
H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST,
0, /* force_write_open */
0, /* creation flags, was H5FD_ONION_FAPL_INFO_CREATE_FLAG_ENABLE_PAGE_ALIGNMENT */
"initial commit" /* comment */
};
uint64_t revision_count;
TESTING("onion-created HDF5 file with revisions testing H5FDctl");
/* Set up */
if ((onion_info.backing_fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
if (NULL == (paths = onion_filepaths_init(basename)))
TEST_ERROR;
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
/*----------------------------------------------------------------------
* Create the skeleton file (create the file without Onion VFD)
*----------------------------------------------------------------------
*/
/* Initialize data */
for (int i = 0; i < 4; i++)
for (int j = 0; j < 4; j++)
wdata[i][j] = i + j;
/* Create a new file using the default properties */
if ((file = H5Fcreate(paths->canon, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Create dataspace with unlimited dimensions */
if ((space = H5Screate_simple(2, dims, maxdims)) < 0)
TEST_ERROR;
/* Create the dataset creation property list, and set the chunk size */
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
TEST_ERROR;
if (H5Pset_chunk(dcpl, 2, chunk) < 0)
TEST_ERROR;
/* Set the fill value for the dataset */
fillval = 99;
if (H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fillval) < 0)
TEST_ERROR;
/* Set the allocation time to "early". This way we can be sure
* that reading from the dataset immediately after creation will
* return the fill value.
*/
if (H5Pset_alloc_time(dcpl, H5D_ALLOC_TIME_EARLY) < 0)
TEST_ERROR;
/* Create the dataset using the dataset creation property list */
if ((dset = H5Dcreate2(file, "DS1", H5T_STD_I32LE, space, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Write the data to the dataset */
if (H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata) < 0)
TEST_ERROR;
if (H5Dclose(dset) < 0)
TEST_ERROR;
if (H5Fclose(file) < 0)
TEST_ERROR;
/*----------------------------------------------------------------------
* First revision: open the file with Onion VFD and add a dataset (DS2) to the file
*----------------------------------------------------------------------
*/
if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
/* Create the dataset using the dataset creation property list */
if ((dset = H5Dcreate2(file, "DS2", H5T_STD_I32LE, space, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Write the data to the dataset */
if (H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata) < 0)
TEST_ERROR;
if (H5Dclose(dset) < 0)
TEST_ERROR;
dset = H5I_INVALID_HID;
if (H5Fclose(file) < 0)
TEST_ERROR;
file = H5I_INVALID_HID;
/*----------------------------------------------------------------------
* Second revision: open the file with Onion VFD and remove the dataset (DS2),
* which was added during the first revision.
*----------------------------------------------------------------------
*/
if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
if (H5Ldelete(file, "DS2", H5P_DEFAULT) < 0)
TEST_ERROR;
if (H5Fclose(file) < 0)
TEST_ERROR;
file = H5I_INVALID_HID;
/*----------------------------------------------------------------------
* Start to verify the number of revisions
*----------------------------------------------------------------------
*/
if (H5FDonion_get_revision_count(basename, fapl_id, &revision_count) < 0)
TEST_ERROR;
if (2 != revision_count)
TEST_ERROR;
/* Close and release resources */
if (H5Pclose(fapl_id) < 0)
TEST_ERROR;
if (H5Pclose(dcpl) < 0)
TEST_ERROR;
if (H5Sclose(space) < 0)
TEST_ERROR;
if (H5Pclose(onion_info.backing_fapl_id) < 0)
TEST_ERROR;
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
onion_filepaths_destroy(paths);
PASSED();
return 0;
error:
if (paths != NULL) {
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
onion_filepaths_destroy(paths);
}
H5E_BEGIN_TRY
{
H5Dclose(dset);
H5Fclose(file);
H5Pclose(fapl_id);
H5Pclose(onion_info.backing_fapl_id);
}
H5E_END_TRY
return -1;
}
static int
test_integration_reference(void)
{
const char *basename = "integration_refer.h5";
hid_t file = H5I_INVALID_HID;
hid_t group = H5I_INVALID_HID;
hid_t space = H5I_INVALID_HID;
hid_t space2 = H5I_INVALID_HID;
hid_t space_ref = H5I_INVALID_HID;
hid_t dset = H5I_INVALID_HID;
hid_t dset2 = H5I_INVALID_HID;
hid_t fapl_id = H5I_INVALID_HID;
hsize_t dims[2] = {4, 4};
hsize_t dim_ref[1] = {2};
int wdata[4][4]; /* Write buffer */
int rdata[4][4]; /* Read buffer */
H5R_ref_t wbuf[2];
H5R_ref_t rbuf[2];
H5O_type_t obj_type;
hsize_t start[2];
hsize_t stride[2];
hsize_t count[2];
hsize_t block[2];
hsize_t coord1[4][2]; /* Coordinates for point selection */
hssize_t nelmts;
struct onion_filepaths *paths = NULL;
H5FD_onion_fapl_info_t onion_info = {
H5FD_ONION_FAPL_INFO_VERSION_CURR,
H5I_INVALID_HID, /* backing_fapl_id */
ONION_TEST_PAGE_SIZE_5, /* page_size */
H5FD_ONION_STORE_TARGET_ONION, /* store_target */
H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST,
0, /* force_write_open */
0, /* creation flags, was H5FD_ONION_FAPL_INFO_CREATE_FLAG_ENABLE_PAGE_ALIGNMENT */
"initial commit" /* comment */
};
TESTING("onion-created HDF5 file with revisions testing references");
/* Set up */
if ((onion_info.backing_fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
if (NULL == (paths = onion_filepaths_init(basename)))
TEST_ERROR;
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
/*----------------------------------------------------------------------
* Create the skeleton file (create the file without Onion VFD)
*----------------------------------------------------------------------
*/
/* Initialize data */
for (int i = 0; i < 4; i++)
for (int j = 0; j < 4; j++)
wdata[i][j] = i + j;
/* Create a new file using the default properties */
if ((file = H5Fcreate(paths->canon, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Create dataspace */
if ((space = H5Screate_simple(2, dims, NULL)) < 0)
TEST_ERROR;
/* Create the dataset using the dataset creation property list */
if ((dset = H5Dcreate2(file, "DS1", H5T_STD_I32LE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Write the data to the dataset */
if (H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata) < 0)
TEST_ERROR;
if (H5Dclose(dset) < 0)
TEST_ERROR;
if (H5Fclose(file) < 0)
TEST_ERROR;
/*----------------------------------------------------------------------
* First revision: open the file with Onion VFD and add a dataset (DS2)
* of object references
*----------------------------------------------------------------------
*/
if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
/* Create dataspace with unlimited dimensions */
if ((space_ref = H5Screate_simple(1, dim_ref, NULL)) < 0)
TEST_ERROR;
/* Create the dataset of object references */
if ((dset = H5Dcreate2(file, "DS2", H5T_STD_REF, space_ref, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Create reference to dataset */
if (H5Rcreate_object(file, "DS1", H5P_DEFAULT, &wbuf[0]) < 0)
TEST_ERROR;
if (H5Rget_obj_type3(&wbuf[0], H5P_DEFAULT, &obj_type) < 0)
TEST_ERROR;
if (obj_type != H5O_TYPE_DATASET)
TEST_ERROR;
/* Create reference to the root group */
if (H5Rcreate_object(file, "/", H5P_DEFAULT, &wbuf[1]) < 0)
TEST_ERROR;
if (H5Rget_obj_type3(&wbuf[1], H5P_DEFAULT, &obj_type) < 0)
TEST_ERROR;
if (obj_type != H5O_TYPE_GROUP)
TEST_ERROR;
/* Write the object reference data to the dataset */
if (H5Dwrite(dset, H5T_STD_REF, H5S_ALL, H5S_ALL, H5P_DEFAULT, wbuf) < 0)
TEST_ERROR;
if (H5Dclose(dset) < 0)
TEST_ERROR;
dset = H5I_INVALID_HID;
if (H5Fclose(file) < 0)
TEST_ERROR;
file = H5I_INVALID_HID;
for (int i = 0; i < 2; i++)
if (H5Rdestroy(&wbuf[i]) < 0)
TEST_ERROR;
/*----------------------------------------------------------------------
* Second revision: open the file with Onion VFD and add a dataset (DS3)
* of region references
*----------------------------------------------------------------------
*/
if ((file = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
/* Create the dataset of region references */
if ((dset = H5Dcreate2(file, "DS3", H5T_STD_REF, space_ref, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Select 2x4 hyperslab for first reference */
start[0] = 0;
start[1] = 0;
stride[0] = 1;
stride[1] = 1;
count[0] = 1;
count[1] = 1;
block[0] = 2;
block[1] = 4;
/* Make a hyperslab selection of 2x4 elements */
if (H5Sselect_hyperslab(space, H5S_SELECT_SET, start, stride, count, block) < 0)
TEST_ERROR;
/* Verify the number of selection */
if ((nelmts = H5Sget_select_npoints(space)) != 8) {
printf("Number of selected elements is supposed to be 8, but got %" PRIuHSIZE "\n", nelmts);
TEST_ERROR;
}
/* Store first data region */
if (H5Rcreate_region(file, "/DS1", space, H5P_DEFAULT, &wbuf[0]) < 0)
TEST_ERROR;
if (H5Rget_obj_type3(&wbuf[0], H5P_DEFAULT, &obj_type) < 0)
TEST_ERROR;
if (obj_type != H5O_TYPE_DATASET)
TEST_ERROR;
/* Select the sequence of four points for the second reference */
coord1[0][0] = 0;
coord1[0][1] = 0;
coord1[1][0] = 1;
coord1[1][1] = 1;
coord1[2][0] = 2;
coord1[2][1] = 2;
coord1[3][0] = 3;
coord1[3][1] = 3;
if (H5Sselect_elements(space, H5S_SELECT_SET, 4, (const hsize_t *)coord1) < 0)
TEST_ERROR;
/* Store the second data region */
if (H5Rcreate_region(file, "/DS1", space, H5P_DEFAULT, &wbuf[1]) < 0)
TEST_ERROR;
if (H5Rget_obj_type3(&wbuf[1], H5P_DEFAULT, &obj_type) < 0)
TEST_ERROR;
if (obj_type != H5O_TYPE_DATASET)
TEST_ERROR;
/* Write the region reference data to the dataset */
if (H5Dwrite(dset, H5T_STD_REF, H5S_ALL, H5S_ALL, H5P_DEFAULT, wbuf) < 0)
TEST_ERROR;
if (H5Dclose(dset) < 0)
TEST_ERROR;
dset = H5I_INVALID_HID;
if (H5Fclose(file) < 0)
TEST_ERROR;
file = H5I_INVALID_HID;
for (int i = 0; i < 2; i++)
if (H5Rdestroy(&wbuf[i]) < 0)
TEST_ERROR;
/*----------------------------------------------------------------------
* Start to verify the revisions
*----------------------------------------------------------------------
*/
/*----------------------------------------------------------------------
* Verify the first revision: it should have the object references
*----------------------------------------------------------------------
*/
onion_info.revision_num = 1;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
if ((file = H5Fopen(paths->canon, H5F_ACC_RDONLY, fapl_id)) < 0)
TEST_ERROR;
/* Open the dataset of the object references */
if ((dset = H5Dopen2(file, "DS2", H5P_DEFAULT)) < 0)
TEST_ERROR;
if (H5Dread(dset, H5T_STD_REF, H5S_ALL, H5S_ALL, H5P_DEFAULT, rbuf) < 0)
TEST_ERROR;
/* Open the referenced dataset and check the data */
if ((dset2 = H5Ropen_object(&rbuf[0], H5P_DEFAULT, H5P_DEFAULT)) < 0)
TEST_ERROR;
if (H5Dread(dset2, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata) < 0)
TEST_ERROR;
for (int i = 0; i < 4; i++) {
for (int j = 0; j < 4; j++) {
int expected = i + j;
if (rdata[i][j] != expected) {
printf("ERROR!!! Expected: %d, Got: %d\n", expected, rdata[i][j]);
TEST_ERROR;
}
}
}
/* Open the referenced group and make sure it's a group object */
if ((group = H5Ropen_object(&rbuf[1], H5P_DEFAULT, H5P_DEFAULT)) < 0)
TEST_ERROR;
if (H5I_GROUP != H5Iget_type(group))
TEST_ERROR;
if (H5Gclose(group) < 0)
TEST_ERROR;
if (H5Dclose(dset) < 0)
TEST_ERROR;
dset = H5I_INVALID_HID;
if (H5Dclose(dset2) < 0)
TEST_ERROR;
dset2 = H5I_INVALID_HID;
if (H5Fclose(file) < 0)
TEST_ERROR;
file = H5I_INVALID_HID;
for (int i = 0; i < 2; i++)
if (H5Rdestroy(&rbuf[i]) < 0)
TEST_ERROR;
/*----------------------------------------------------------------------
* Verify the second revision: it should have the region references
*----------------------------------------------------------------------
*/
onion_info.revision_num = 2;
if (H5Pset_fapl_onion(fapl_id, &onion_info) < 0)
TEST_ERROR;
if ((file = H5Fopen(paths->canon, H5F_ACC_RDONLY, fapl_id)) < 0)
TEST_ERROR;
/* Open the dataset of the region reference */
if ((dset = H5Dopen2(file, "DS3", H5P_DEFAULT)) < 0)
TEST_ERROR;
if (H5Dread(dset, H5T_STD_REF, H5S_ALL, H5S_ALL, H5P_DEFAULT, rbuf) < 0)
TEST_ERROR;
/* Get the hyperslab selection and check the referenced region of the dataset */
if ((space2 = H5Ropen_region(&rbuf[0], H5P_DEFAULT, H5P_DEFAULT)) < 0)
TEST_ERROR;
if ((nelmts = H5Sget_select_npoints(space2)) != 8) {
printf("Number of selected elements is supposed to be 8, but got %" PRIuHSIZE "\n", nelmts);
TEST_ERROR;
}
if (H5Sclose(space2) < 0)
TEST_ERROR;
space2 = H5I_INVALID_HID;
/* Get the element selection and check the referenced region of the dataset */
if ((space2 = H5Ropen_region(&rbuf[1], H5P_DEFAULT, H5P_DEFAULT)) < 0)
TEST_ERROR;
if ((nelmts = H5Sget_select_npoints(space2)) != 4) {
printf("Number of selected elements is supposed to be 4, but got %" PRIuHSIZE "\n", nelmts);
TEST_ERROR;
}
if (H5Dclose(dset) < 0)
TEST_ERROR;
dset = H5I_INVALID_HID;
if (H5Sclose(space2) < 0)
TEST_ERROR;
space2 = H5I_INVALID_HID;
if (H5Fclose(file) < 0)
TEST_ERROR;
file = H5I_INVALID_HID;
for (int i = 0; i < 2; i++)
if (H5Rdestroy(&rbuf[i]) < 0)
TEST_ERROR;
/* Close and release resources */
if (H5Pclose(fapl_id) < 0)
TEST_ERROR;
if (H5Sclose(space) < 0)
TEST_ERROR;
if (H5Sclose(space_ref) < 0)
TEST_ERROR;
if (H5Pclose(onion_info.backing_fapl_id) < 0)
TEST_ERROR;
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
onion_filepaths_destroy(paths);
PASSED();
return 0;
error:
if (paths != NULL) {
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
onion_filepaths_destroy(paths);
}
H5E_BEGIN_TRY
{
H5Dclose(dset);
H5Fclose(file);
H5Pclose(fapl_id);
H5Pclose(onion_info.backing_fapl_id);
}
H5E_END_TRY
return -1;
}
static int
test_integration_create_by_name(void)
{
const char *basename = "integration_by_name.h5";
hid_t fapl_id = H5I_INVALID_HID;
struct onion_filepaths *paths = NULL;
hid_t file_id = H5I_INVALID_HID;
hid_t file = H5I_INVALID_HID;
hid_t space = H5I_INVALID_HID;
hid_t dset = H5I_INVALID_HID;
hid_t dcpl = H5I_INVALID_HID;
hsize_t dims[2] = {1, ONE_DIM_SIZE};
hsize_t maxdims[2] = {1, ONE_DIM_SIZE};
int fillval;
struct {
int arr[ONE_DIM_SIZE];
} *wdata = NULL;
struct {
int arr[ONE_DIM_SIZE];
} *rdata = NULL;
struct {
int arr[ONE_DIM_SIZE];
} *dset_data = NULL;
TESTING("H5Pset_driver_by_name");
/* Setup */
if (NULL == (wdata = calloc(1, sizeof(*wdata))))
TEST_ERROR;
if (NULL == (rdata = calloc(1, sizeof(*rdata))))
TEST_ERROR;
if (NULL == (dset_data = calloc(1, sizeof(*dset_data))))
TEST_ERROR;
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
/* Use H5Pset_driver_by_name to enable the Onion VFD */
if (H5Pset_driver_by_name(fapl_id, "onion", "{revision_num: H5FD_ONION_FAPL_INFO_REVISION_ID_LATEST}") <
0)
TEST_ERROR;
if (NULL == (paths = onion_filepaths_init(basename)))
TEST_ERROR;
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
/*----------------------------------------------------------------------
* Create the skeleton file (create the file without Onion VFD)
*----------------------------------------------------------------------
*/
/* Initialize data */
for (int i = 0; i < ONE_DIM_SIZE; i++)
wdata->arr[i] = i;
/* Create a new file using the default properties */
if ((file = H5Fcreate(paths->canon, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Create dataspace with unlimited dimensions*/
if ((space = H5Screate_simple(2, dims, maxdims)) < 0)
TEST_ERROR;
/* Create the dataset creation property list */
if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0)
TEST_ERROR;
/* Set the fill value for the dataset */
fillval = 99;
if (H5Pset_fill_value(dcpl, H5T_NATIVE_INT, &fillval) < 0)
TEST_ERROR;
/* Set the allocation time to "early". This way we can be sure
* that reading from the dataset immediately after creation will
* return the fill value.
*/
if (H5Pset_alloc_time(dcpl, H5D_ALLOC_TIME_EARLY) < 0)
TEST_ERROR;
/* Create the dataset using the dataset creation property list */
if ((dset = H5Dcreate2(file, "DS1", H5T_STD_I32LE, space, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0)
TEST_ERROR;
/* Write the data to the dataset */
if (H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wdata) < 0)
TEST_ERROR;
/* Close everything */
if (H5Pclose(dcpl) < 0)
TEST_ERROR;
if (H5Dclose(dset) < 0)
TEST_ERROR;
if (H5Sclose(space) < 0)
TEST_ERROR;
if (H5Fclose(file) < 0)
TEST_ERROR;
/*----------------------------------------------------------------------
* First revision: open the file with Onion VFD and change the data
*----------------------------------------------------------------------
*/
if ((file_id = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
if ((dset = H5Dopen2(file_id, "DS1", H5P_DEFAULT)) < 0)
TEST_ERROR;
for (int i = 0; i < ONE_DIM_SIZE; i++)
dset_data->arr[i] = i + ONE_DIM_SIZE;
if (H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset_data) < 0)
TEST_ERROR;
if (H5Dclose(dset) < 0)
TEST_ERROR;
dset = H5I_INVALID_HID;
if (H5Fclose(file_id) < 0)
TEST_ERROR;
file_id = H5I_INVALID_HID;
/*----------------------------------------------------------------------
* Second revision: open the file with Onion VFD and change the data
*----------------------------------------------------------------------
*/
if ((file_id = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
if ((dset = H5Dopen2(file_id, "DS1", H5P_DEFAULT)) < 0)
TEST_ERROR;
for (int i = 0; i < ONE_DIM_SIZE; i++)
dset_data->arr[i] = i + 2048;
if (H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset_data) < 0)
TEST_ERROR;
/* CLEANUP */
if (H5Dclose(dset) < 0)
TEST_ERROR;
dset = H5I_INVALID_HID;
if (H5Fclose(file_id) < 0)
TEST_ERROR;
file_id = H5I_INVALID_HID;
/*----------------------------------------------------------------------
* Third revision: open the file with Onion VFD and change the data
*----------------------------------------------------------------------
*/
if ((file_id = H5Fopen(paths->canon, H5F_ACC_RDWR, fapl_id)) < 0)
TEST_ERROR;
if ((dset = H5Dopen2(file_id, "DS1", H5P_DEFAULT)) < 0)
TEST_ERROR;
for (int i = 0; i < ONE_DIM_SIZE; i += 20)
dset_data->arr[i] = i + 3072;
if (H5Dwrite(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, dset_data) < 0)
TEST_ERROR;
/* CLEANUP */
if (H5Dclose(dset) < 0)
TEST_ERROR;
dset = H5I_INVALID_HID;
if (H5Fclose(file_id) < 0)
TEST_ERROR;
file_id = H5I_INVALID_HID;
if (H5Pclose(fapl_id) < 0)
TEST_ERROR;
fapl_id = H5I_INVALID_HID;
/*----------------------------------------------------------------------
* Start to verify the revision with H5Pset_driver_by_name
*----------------------------------------------------------------------
*/
/*----------------------------------------------------------------------
* Verify the second revision
*----------------------------------------------------------------------
*/
if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0)
TEST_ERROR;
if (H5Pset_driver_by_name(fapl_id, "onion", "{revision_num: 2; page_size: 4; }") < 0)
TEST_ERROR;
if ((file_id = H5Fopen(paths->canon, H5F_ACC_RDONLY, fapl_id)) < 0)
TEST_ERROR;
if ((dset = H5Dopen2(file_id, "DS1", H5P_DEFAULT)) < 0)
TEST_ERROR;
if (H5Dread(dset, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata) < 0)
TEST_ERROR;
for (int i = 0; i < ONE_DIM_SIZE; i += 20) {
int expected = i + 2048;
if (rdata->arr[i] != expected) {
printf("ERROR!!! Expected: %d, Got: %d\n", expected, rdata->arr[i]);
TEST_ERROR;
}
}
/* Close everything */
if (H5Dclose(dset) < 0)
TEST_ERROR;
if (H5Fclose(file_id) < 0)
TEST_ERROR;
if (H5Pclose(fapl_id) < 0)
TEST_ERROR;
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
onion_filepaths_destroy(paths);
free(wdata);
free(rdata);
free(dset_data);
PASSED();
return 0;
error:
if (paths != NULL) {
HDremove(paths->canon);
HDremove(paths->onion);
HDremove(paths->recovery);
onion_filepaths_destroy(paths);
}
H5E_BEGIN_TRY
{
H5Dclose(dset);
H5Fclose(file_id);
H5Pclose(fapl_id);
}
H5E_END_TRY
free(wdata);
free(rdata);
free(dset_data);
return -1;
} /* end test_integration_create_simple() */
/*-----------------------------------------------------------------------------
*
* Function: main()
*
* Purpose: Perform unit tests on for the Onion VFD.
*
*-----------------------------------------------------------------------------
*/
int
main(void)
{
const char *env_h5_drvr = NULL; /* VFD value from environment */
int nerrors = 0;
printf("Testing Onion VFD functionality.\n");
h5_reset();
/* The onion VFD only supports the sec2 VFD under the hood, so skip this
* test when the environment variable has been set to something else
*/
env_h5_drvr = getenv(HDF5_DRIVER);
if (env_h5_drvr == NULL)
env_h5_drvr = "nomatch";
if ((0 != strcmp(env_h5_drvr, "nomatch")) && (0 != strcmp(env_h5_drvr, "sec2"))) {
SKIPPED();
puts("Onion VFD test skipped due to non-sec2 default VFD");
exit(EXIT_SUCCESS);
}
/* Initialize */
flags_create_s = H5F_ACC_RDWR | H5F_ACC_CREAT | H5F_ACC_TRUNC;
/* Run tests. Return values on error are negative. */
nerrors -= test_archival_index();
nerrors -= test_revision_index();
nerrors -= test_revision_index_collisions();
nerrors -= test_revision_index_resizing();
nerrors -= test_revision_index_to_archival_index();
nerrors -= test_fapl();
nerrors -= test_header_encode_decode();
nerrors -= test_history_encode_decode_empty();
nerrors -= test_history_encode_decode();
nerrors -= test_revision_record_encode_decode();
nerrors -= test_create_oniontarget(false, false);
nerrors -= test_create_oniontarget(true, false);
nerrors -= test_create_oniontarget(false, true);
nerrors -= test_create_oniontarget(true, true);
nerrors -= test_several_revisions_with_logical_gaps();
nerrors -= test_page_aligned_history_create();
nerrors -= test_integration_create();
nerrors -= test_integration_create_simple();
nerrors -= test_integration_create_delete_objects();
nerrors -= test_integration_dset_extension();
nerrors -= test_integration_ctl();
nerrors -= test_integration_reference();
nerrors -= test_integration_create_by_name();
if (nerrors > 0) {
printf("***** %d Onion TEST%s FAILED! *****\n", nerrors, nerrors > 1 ? "S" : "");
return EXIT_FAILURE;
}
printf("All Onion tests passed.\n");
return EXIT_SUCCESS;
} /* end main() */