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486c13d307
h5diff new features Description: added comparison for attributes adeded comparison for all dataset datatypes added tests for the new features changed the output format Solution: Platforms tested: linux solaris 5.7 IRIX 6.5 (64) Misc. update:
684 lines
20 KiB
C
684 lines
20 KiB
C
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the files COPYING and Copyright.html. COPYING can be found at the root *
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* of the source code distribution tree; Copyright.html can be found at the *
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* root level of an installed copy of the electronic HDF5 document set and *
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* is linked from the top-level documents page. It can also be found at *
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* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
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* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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#include "testh5diff.h"
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/*-------------------------------------------------------------------------
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* Function: write_dset_in
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*
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* Purpose: write datasets in LOC_ID
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*
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* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
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*
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* Date: November 12, 2003
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*
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*-------------------------------------------------------------------------
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*/
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void write_dset_in(hid_t loc_id,
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const char* dset_name, /* for saving reference to dataset*/
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hid_t file_id,
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int make_diffs /* flag to modify data buffers */)
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{
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/* Compound datatype */
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typedef struct s_t
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{
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char a;
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double b;
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} s_t;
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typedef enum
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{
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RED,
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GREEN
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} e_t;
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hid_t dset_id;
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hid_t space_id;
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hid_t type_id;
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hid_t plist_id;
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herr_t status;
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int val, i, j, k, n;
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float f;
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int fillvalue=2;
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/* create 1D attributes with dimension [2], 2 elements */
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hsize_t dims[1]={2};
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char buf1[2][2]= {"ab","de"}; /* string */
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char buf2[2]= {1,2}; /* bitfield, opaque */
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s_t buf3[2]= {{1,2},{3,4}}; /* compound */
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hobj_ref_t buf4[2]; /* reference */
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e_t buf45[2]= {RED,GREEN}; /* enum */
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hvl_t buf5[2]; /* vlen */
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hsize_t dimarray[1]={3}; /* array dimension */
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int buf6[2][3]= {{1,2,3},{4,5,6}}; /* array */
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int buf7[2]= {1,2}; /* integer */
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float buf8[2]= {1,2}; /* float */
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/* create 2D attributes with dimension [3][2], 6 elements */
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hsize_t dims2[2]={3,2};
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char buf12[6][2]= {"ab","cd","ef","gh","ij","kl"}; /* string */
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char buf22[3][2]= {{1,2},{3,4},{5,6}}; /* bitfield, opaque */
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s_t buf32[6]= {{1,2},{3,4},{5,6},{7,8},{9,10},{11,12}}; /* compound */
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hobj_ref_t buf42[3][2]; /* reference */
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e_t buf452[3][2]; /* enum */
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hvl_t buf52[3][2]; /* vlen */
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int buf62[6][3]= {{1,2,3},{4,5,6},{7,8,9},{10,11,12},{13,14,15},{16,17,18}}; /* array */
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int buf72[3][2]= {{1,2},{3,4},{5,6}}; /* integer */
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float buf82[3][2]= {{1,2},{3,4},{5,6}}; /* float */
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/* create 3D attributes with dimension [4][3][2], 24 elements */
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hsize_t dims3[3]={4,3,2};
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char buf13[24][2]= {"ab","cd","ef","gh","ij","kl","mn","pq",
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"rs","tu","vw","xz","AB","CD","EF","GH",
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"IJ","KL","MN","PQ","RS","TU","VW","XZ"}; /* string */
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char buf23[4][3][2]; /* bitfield, opaque */
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s_t buf33[4][3][2]; /* compound */
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hobj_ref_t buf43[4][3][2]; /* reference */
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e_t buf453[4][3][2]; /* enum */
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hvl_t buf53[4][3][2]; /* vlen */
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int buf63[24][3]; /* array */
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int buf73[4][3][2]; /* integer */
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float buf83[4][3][2]; /* float */
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/*-------------------------------------------------------------------------
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* 1D
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*-------------------------------------------------------------------------
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*/
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/*-------------------------------------------------------------------------
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* H5T_STRING
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*-------------------------------------------------------------------------
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*/
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if (make_diffs)
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{
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for (i=0; i<2; i++)
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for (j=0; j<2; j++)
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{
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buf1[i][j]='z';
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}
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}
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type_id = H5Tcopy(H5T_C_S1);
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status = H5Tset_size(type_id, 2);
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write_dset(loc_id,1,dims,"string",type_id,buf1);
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status = H5Tclose(type_id);
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/*-------------------------------------------------------------------------
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* H5T_BITFIELD
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*-------------------------------------------------------------------------
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*/
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if (make_diffs)
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{
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for (i=0; i<2; i++)
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buf2[i]=buf2[1]=0;
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}
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type_id = H5Tcopy(H5T_STD_B8LE);
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write_dset(loc_id,1,dims,"bitfield",type_id,buf2);
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status = H5Tclose(type_id);
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/*-------------------------------------------------------------------------
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* H5T_OPAQUE
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*-------------------------------------------------------------------------
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*/
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if (make_diffs)
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{
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for (i=0; i<2; i++)
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{
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buf3[i].a=0; buf3[i].b=0;
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}
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}
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type_id = H5Tcreate(H5T_OPAQUE, 1);
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status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */
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write_dset(loc_id,1,dims,"opaque",type_id,buf2);
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status = H5Tclose(type_id);
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/*-------------------------------------------------------------------------
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* H5T_COMPOUND
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*-------------------------------------------------------------------------
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*/
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if (make_diffs)
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{
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for (i=0; i<2; i++)
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{
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buf45[i]=GREEN;
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}
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}
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type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
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H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR);
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H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE);
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write_dset(loc_id,1,dims,"compound",type_id,buf3);
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status = H5Tclose(type_id);
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/*-------------------------------------------------------------------------
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* H5T_REFERENCE
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*-------------------------------------------------------------------------
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*/
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/* Create references to dataset */
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if (dset_name)
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{
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status=H5Rcreate(&buf4[0],file_id,dset_name,H5R_OBJECT,-1);
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status=H5Rcreate(&buf4[1],file_id,dset_name,H5R_OBJECT,-1);
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write_dset(loc_id,1,dims,"reference",H5T_STD_REF_OBJ,buf4);
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}
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/*-------------------------------------------------------------------------
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* H5T_ENUM
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*-------------------------------------------------------------------------
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*/
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type_id = H5Tcreate(H5T_ENUM, sizeof(e_t));
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H5Tenum_insert(type_id, "RED", (val = 0, &val));
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H5Tenum_insert(type_id, "GREEN", (val = 1, &val));
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write_dset(loc_id,1,dims,"enum",type_id,buf45);
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status = H5Tclose(type_id);
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/*-------------------------------------------------------------------------
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* H5T_VLEN
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*-------------------------------------------------------------------------
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*/
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/* Allocate and initialize VL dataset to write */
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buf5[0].len = 1;
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buf5[0].p = malloc( 1 * sizeof(int));
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((int *)buf5[0].p)[0]=1;
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buf5[1].len = 2;
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buf5[1].p = malloc( 2 * sizeof(int));
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((int *)buf5[1].p)[0]=2;
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((int *)buf5[1].p)[1]=3;
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if (make_diffs)
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{
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((int *)buf5[0].p)[0]=0;
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((int *)buf5[1].p)[0]=0;
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((int *)buf5[1].p)[1]=0;
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}
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space_id = H5Screate_simple(1,dims,NULL);
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type_id = H5Tvlen_create(H5T_NATIVE_INT);
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dset_id = H5Dcreate(loc_id,"vlen",type_id,space_id,H5P_DEFAULT);
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status = H5Dwrite(dset_id,type_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf5);
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assert(status>=0);
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status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf5);
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assert(status>=0);
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status = H5Dclose(dset_id);
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status = H5Tclose(type_id);
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status = H5Sclose(space_id);
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/*-------------------------------------------------------------------------
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* H5T_ARRAY
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*-------------------------------------------------------------------------
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*/
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if (make_diffs)
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{
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for (i=0; i<2; i++)
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for (j=0; j<3; j++)
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{
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buf6[i][j]=0;
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}
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}
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type_id = H5Tarray_create(H5T_NATIVE_INT,1,dimarray,NULL);
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write_dset(loc_id,1,dims,"array",type_id,buf6);
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status = H5Tclose(type_id);
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/*-------------------------------------------------------------------------
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* H5T_INTEGER and H5T_FLOAT
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*-------------------------------------------------------------------------
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*/
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if (make_diffs)
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{
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for (i=0; i<2; i++)
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{
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buf7[i]=0;
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buf8[i]=0;
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}
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}
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write_dset(loc_id,1,dims,"integer",H5T_NATIVE_INT,buf7);
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write_dset(loc_id,1,dims,"float",H5T_NATIVE_FLOAT,buf8);
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/*-------------------------------------------------------------------------
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* 2D
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*-------------------------------------------------------------------------
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*/
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/*-------------------------------------------------------------------------
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* H5T_STRING
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*-------------------------------------------------------------------------
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*/
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if (make_diffs)
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{
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memset(buf12, 'z', sizeof buf12);
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}
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type_id = H5Tcopy(H5T_C_S1);
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status = H5Tset_size(type_id, 2);
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write_dset(loc_id,2,dims2,"string2D",type_id,buf12);
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status = H5Tclose(type_id);
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/*-------------------------------------------------------------------------
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* H5T_BITFIELD
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*-------------------------------------------------------------------------
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*/
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if (make_diffs)
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{
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memset(buf22,0,sizeof buf22);
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}
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type_id = H5Tcopy(H5T_STD_B8LE);
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write_dset(loc_id,2,dims2,"bitfield2D",type_id,buf22);
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status = H5Tclose(type_id);
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/*-------------------------------------------------------------------------
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* H5T_OPAQUE
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*-------------------------------------------------------------------------
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*/
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type_id = H5Tcreate(H5T_OPAQUE, 1);
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status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */
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write_dset(loc_id,2,dims2,"opaque2D",type_id,buf22);
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status = H5Tclose(type_id);
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/*-------------------------------------------------------------------------
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* H5T_COMPOUND
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*-------------------------------------------------------------------------
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*/
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if (make_diffs)
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{
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memset(buf32,0,sizeof buf32);
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}
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type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
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H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR);
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H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE);
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write_dset(loc_id,2,dims2,"compound2D",type_id,buf32);
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status = H5Tclose(type_id);
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/*-------------------------------------------------------------------------
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* H5T_REFERENCE
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*-------------------------------------------------------------------------
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*/
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/* Create references to dataset */
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if (dset_name)
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{
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for (i = 0; i < 3; i++) {
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for (j = 0; j < 2; j++) {
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status=H5Rcreate(&buf42[i][j],file_id,dset_name,H5R_OBJECT,-1);
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}
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}
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write_dset(loc_id,2,dims2,"reference2D",H5T_STD_REF_OBJ,buf42);
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}
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/*-------------------------------------------------------------------------
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* H5T_ENUM
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*-------------------------------------------------------------------------
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*/
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for (i=0; i<3; i++)
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for (j=0; j<2; j++)
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{
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if (make_diffs) buf452[i][j]=GREEN; else buf452[i][j]=RED;
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}
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type_id = H5Tcreate(H5T_ENUM, sizeof(e_t));
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H5Tenum_insert(type_id, "RED", (val = 0, &val));
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H5Tenum_insert(type_id, "GREEN", (val = 1, &val));
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write_dset(loc_id,2,dims2,"enum2D",type_id,0);
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status = H5Tclose(type_id);
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/*-------------------------------------------------------------------------
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* H5T_VLEN
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*-------------------------------------------------------------------------
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*/
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/* Allocate and initialize VL dataset to write */
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n=0;
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for (i = 0; i < 3; i++) {
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for (j = 0; j < 2; j++) {
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int l;
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buf52[i][j].p = malloc((i + 1) * sizeof(int));
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buf52[i][j].len = i + 1;
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for (l = 0; l < i + 1; l++)
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if (make_diffs)((int *)buf52[i][j].p)[l] = 0;
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else ((int *)buf52[i][j].p)[l] = n++;
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}
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}
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space_id = H5Screate_simple(2,dims2,NULL);
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type_id = H5Tvlen_create(H5T_NATIVE_INT);
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dset_id = H5Dcreate(loc_id,"vlen2D",type_id,space_id,H5P_DEFAULT);
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status = H5Dwrite(dset_id,type_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf52);
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assert(status>=0);
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status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf52);
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assert(status>=0);
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status = H5Dclose(dset_id);
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status = H5Tclose(type_id);
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status = H5Sclose(space_id);
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/*-------------------------------------------------------------------------
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* H5T_ARRAY
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*-------------------------------------------------------------------------
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*/
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if (make_diffs)
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{
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memset(buf62,0,sizeof buf62);
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}
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type_id = H5Tarray_create(H5T_NATIVE_INT,1,dimarray,NULL);
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write_dset(loc_id,2,dims2,"array2D",type_id,buf62);
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status = H5Tclose(type_id);
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/*-------------------------------------------------------------------------
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* H5T_INTEGER, write a fill value
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*-------------------------------------------------------------------------
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*/
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if (make_diffs)
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{
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memset(buf72,0,sizeof buf72);
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memset(buf82,0,sizeof buf82);
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}
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plist_id = H5Pcreate(H5P_DATASET_CREATE);
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status = H5Pset_fill_value(plist_id, H5T_NATIVE_INT, &fillvalue);
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space_id = H5Screate_simple(2,dims2,NULL);
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dset_id = H5Dcreate(loc_id,"integer2D",H5T_NATIVE_INT,space_id,plist_id);
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status = H5Dwrite(dset_id,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf72);
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status = H5Pclose(plist_id);
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status = H5Dclose(dset_id);
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status = H5Sclose(space_id);
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/*-------------------------------------------------------------------------
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* H5T_FLOAT
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*-------------------------------------------------------------------------
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*/
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write_dset(loc_id,2,dims2,"float2D",H5T_NATIVE_FLOAT,buf82);
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/*-------------------------------------------------------------------------
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* 3D
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*-------------------------------------------------------------------------
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*/
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/*-------------------------------------------------------------------------
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* H5T_STRING
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*-------------------------------------------------------------------------
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*/
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if (make_diffs)
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{
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memset(buf13,'z',sizeof buf13);
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}
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type_id = H5Tcopy(H5T_C_S1);
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status = H5Tset_size(type_id, 2);
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write_dset(loc_id,3,dims3,"string3D",type_id,buf13);
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status = H5Tclose(type_id);
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/*-------------------------------------------------------------------------
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* H5T_BITFIELD
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*-------------------------------------------------------------------------
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*/
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n=1;
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for (i = 0; i < 4; i++) {
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for (j = 0; j < 3; j++) {
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for (k = 0; k < 2; k++) {
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if (make_diffs) buf23[i][j][k]=0;
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else buf23[i][j][k]=n++;
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}
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}
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}
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type_id = H5Tcopy(H5T_STD_B8LE);
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write_dset(loc_id,3,dims3,"bitfield3D",type_id,buf23);
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status = H5Tclose(type_id);
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/*-------------------------------------------------------------------------
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* H5T_OPAQUE
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*-------------------------------------------------------------------------
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*/
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type_id = H5Tcreate(H5T_OPAQUE, 1);
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status = H5Tset_tag(type_id, "1-byte opaque type"); /* must set this */
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write_dset(loc_id,3,dims3,"opaque3D",type_id,buf23);
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status = H5Tclose(type_id);
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/*-------------------------------------------------------------------------
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* H5T_COMPOUND
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*-------------------------------------------------------------------------
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*/
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|
|
|
n=1;
|
|
for (i = 0; i < 4; i++) {
|
|
for (j = 0; j < 3; j++) {
|
|
for (k = 0; k < 2; k++) {
|
|
if (make_diffs) {
|
|
buf33[i][j][k].a=0;
|
|
buf33[i][j][k].b=0;
|
|
}
|
|
else {
|
|
buf33[i][j][k].a=n++;
|
|
buf33[i][j][k].b=n++;
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
|
|
type_id = H5Tcreate (H5T_COMPOUND, sizeof(s_t));
|
|
H5Tinsert(type_id, "a", HOFFSET(s_t, a), H5T_NATIVE_CHAR);
|
|
H5Tinsert(type_id, "b", HOFFSET(s_t, b), H5T_NATIVE_DOUBLE);
|
|
write_dset(loc_id,3,dims3,"compound3D",type_id,buf33);
|
|
status = H5Tclose(type_id);
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* H5T_REFERENCE
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
/* Create references to dataset */
|
|
if (dset_name)
|
|
{
|
|
for (i = 0; i < 4; i++) {
|
|
for (j = 0; j < 3; j++) {
|
|
for (k = 0; k < 2; k++)
|
|
status=H5Rcreate(&buf43[i][j][k],file_id,dset_name,H5R_OBJECT,-1);
|
|
}
|
|
}
|
|
write_dset(loc_id,3,dims3,"reference3D",H5T_STD_REF_OBJ,buf43);
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* H5T_ENUM
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
|
|
|
|
for (i = 0; i < 4; i++) {
|
|
for (j = 0; j < 3; j++) {
|
|
for (k = 0; k < 2; k++) {
|
|
if (make_diffs) buf453[i][j][k]=RED; else buf453[i][j][k]=GREEN;
|
|
}
|
|
}
|
|
}
|
|
|
|
type_id = H5Tcreate(H5T_ENUM, sizeof(e_t));
|
|
H5Tenum_insert(type_id, "RED", (val = 0, &val));
|
|
H5Tenum_insert(type_id, "GREEN", (val = 1, &val));
|
|
write_dset(loc_id,3,dims3,"enum3D",type_id,0);
|
|
status = H5Tclose(type_id);
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* H5T_VLEN
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
|
|
/* Allocate and initialize VL dataset to write */
|
|
n=0;
|
|
for (i = 0; i < 4; i++) {
|
|
for (j = 0; j < 3; j++) {
|
|
for (k = 0; k < 2; k++) {
|
|
int l;
|
|
buf53[i][j][k].p = malloc((i + 1) * sizeof(int));
|
|
buf53[i][j][k].len = i + 1;
|
|
for (l = 0; l < i + 1; l++)
|
|
if (make_diffs)((int *)buf53[i][j][k].p)[l] = 0;
|
|
else ((int *)buf53[i][j][k].p)[l] = n++;
|
|
}
|
|
}
|
|
}
|
|
|
|
space_id = H5Screate_simple(3,dims3,NULL);
|
|
type_id = H5Tvlen_create(H5T_NATIVE_INT);
|
|
dset_id = H5Dcreate(loc_id,"vlen3D",type_id,space_id,H5P_DEFAULT);
|
|
status = H5Dwrite(dset_id,type_id,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf53);
|
|
assert(status>=0);
|
|
status = H5Dvlen_reclaim(type_id,space_id,H5P_DEFAULT,buf53);
|
|
assert(status>=0);
|
|
status = H5Dclose(dset_id);
|
|
status = H5Tclose(type_id);
|
|
status = H5Sclose(space_id);
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* H5T_ARRAY
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
|
|
|
|
n=1;
|
|
for (i = 0; i < 24; i++) {
|
|
for (j = 0; j < (int)dimarray[0]; j++) {
|
|
if (make_diffs) buf63[i][j]=0;
|
|
else buf63[i][j]=n++;
|
|
}
|
|
}
|
|
|
|
type_id = H5Tarray_create(H5T_NATIVE_INT,1,dimarray,NULL);
|
|
write_dset(loc_id,3,dims3,"array3D",type_id,buf63);
|
|
status = H5Tclose(type_id);
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* H5T_INTEGER and H5T_FLOAT
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
n=1; f=1;
|
|
for (i = 0; i < 4; i++) {
|
|
for (j = 0; j < 3; j++) {
|
|
for (k = 0; k < 2; k++) {
|
|
if (make_diffs) {
|
|
buf73[i][j][k]=0;
|
|
buf83[i][j][k]=0;
|
|
}
|
|
else {
|
|
buf73[i][j][k]=n++;
|
|
buf83[i][j][k]=f++;
|
|
}
|
|
}
|
|
}
|
|
}
|
|
write_dset(loc_id,3,dims3,"integer3D",H5T_NATIVE_INT,buf73);
|
|
write_dset(loc_id,3,dims3,"float3D",H5T_NATIVE_FLOAT,buf83);
|
|
}
|
|
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Check all HDF5 classes
|
|
* H5T_INTEGER, H5T_FLOAT
|
|
* H5T_TIME, H5T_STRING, H5T_BITFIELD, H5T_OPAQUE, H5T_COMPOUND, H5T_REFERENCE,
|
|
* H5T_ENUM, H5T_VLEN, H5T_ARRAY
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
|
|
|
|
int test_dsetall(const char *file,
|
|
int make_diffs /* flag to modify data buffers */)
|
|
{
|
|
hid_t file_id;
|
|
hid_t dset_id;
|
|
hid_t group_id;
|
|
hid_t space_id;
|
|
hsize_t dims[1]={2};
|
|
herr_t status;
|
|
int buf[2]={1,2};
|
|
|
|
if (make_diffs)
|
|
{
|
|
memset(buf,0,sizeof buf);
|
|
}
|
|
|
|
/* Create a file */
|
|
if ((file_id = H5Fcreate(file, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT))<0)
|
|
return -1;
|
|
|
|
/* Create a 1D dataset */
|
|
space_id = H5Screate_simple(1,dims,NULL);
|
|
dset_id = H5Dcreate(file_id,"dset",H5T_NATIVE_INT,space_id,H5P_DEFAULT);
|
|
status = H5Dwrite(dset_id,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,buf);
|
|
status = H5Sclose(space_id);
|
|
assert(status>=0);
|
|
|
|
/* Create a group */
|
|
group_id = H5Gcreate(file_id,"g1",0);
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* write a series of datasets on the group
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
|
|
write_dset_in(group_id,"/dset",file_id,make_diffs);
|
|
|
|
/* Close */
|
|
status = H5Dclose(dset_id);
|
|
assert(status>=0);
|
|
status = H5Gclose(group_id);
|
|
assert(status>=0);
|
|
|
|
/* Close file */
|
|
status = H5Fclose(file_id);
|
|
assert(status>=0);
|
|
return status;
|
|
}
|
|
|
|
|
|
|