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hdf5/tools/h5toh4.c
Albert Cheng fcfecf9ff2 [svn-r2680] Purpose: 
Bug fix (ID 419)
Description:
    Converted strings class types (in dataset and attributes) to
    HDF4 type of DFNT_INT8.  Should have been DFNT_CHAR type.
Solution:
h5toh4.c:
    Changed the HDF4 type from DFNT_INT8 to DFNT_CHAR type.
    Converted all hdf5 strings (be it NULLTERM, NULLPAD, SPACEPAD)
    all to fixed width space padded HDF4 DFNT_CHAR.
testh5toh4:
    Added the testing of $HDF_NOCLEANUP before cleaning away the result files.
testfiles/Expected/tattr.hdf:
testfiles/Expected/tstr.hdf:
testfiles/Expected/tstr2.hdf:
    Updated with the corrected DFNT_CHAR type.
Platforms tested:
    Solaris 2.7, Linux, Irix 6.5.
2000-10-12 21:32:25 -05:00

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/******************************************************************************
Description: This file contains routines to translate H5 files to H4 files.
Author: Paul Harten for the University of Illinois, NCSA
Creation Date: 04 October 1998
History:
*****************************************************************************/
#include "h5toh4.h"
#include <errno.h>
#include <string.h>
#include <fcntl.h>
#include <h5tools.h>
#if WIN32
typedef unsigned int mode_t;
#endif
#ifndef S_ISDIR
#define S_ISDIR(mode) (((mode)&0xF000) == S_IFDIR)
#endif
extern void PrintOptions_h5toh4(void);
extern char *BuildFilename(char *h5_filename, char *h4_extension);
extern int test_file(char *filename, int oflag, mode_t mode);
extern int test_dir(char *);
extern int h5toh4(char *, char *);
extern herr_t convert_group(hid_t, char *, op_data_t *);
extern herr_t convert_dataset(hid_t, char *, op_data_t *);
extern herr_t convert_all(hid_t, char *, op_data_t *);
extern herr_t convert_attr(hid_t, char *, op_data_t *);
extern herr_t convert_shared_dataset(hid_t, int, op_data_t *);
extern herr_t convert_shared_group(hid_t, int, op_data_t *);
extern herr_t convert_dataset_string(hid_t, char *, op_data_t *);
extern int32 h5type_to_h4type(hid_t);
extern hid_t h4type_to_memtype(int32);
extern void init_table(table_t **temp);
extern void free_table(table_t **temp);
extern void init_prefix(char **prefix, int length);
extern void dump_tables(char* name, table_t* table);
extern herr_t find_objs(hid_t , const char *, void *);
extern int get_table_idx(table_t*, unsigned long *);
extern int get_tableflag(table_t*, int);
extern int set_tableflag(table_t*, int);
extern char* get_objectname(table_t*, int);
typedef herr_t (*H5G_operator_t)(hid_t, const char*, void*);
static int prefix_len = 1024;
static char *prefix;
static table_t *group_table, *dset_table, *type_table;
/*****************************************************************************
Routine: main()
Description: This routine check out arguments sent, makes sure everything is
ok, chooses between the acceptable argument formats and then
calls h5toh4().
Input: arg - the number of arguments from the call + 1;
argv - a pointer to an array of strings which are the arguments.
This includes the routine name as the first string.
Output: function return - error status
*****************************************************************************/
int
main(int argc, char *argv[])
{
char *h5_filename=NULL;
char *h4_filename=NULL;
char *h4_extension;
int status = 0;
int status2 = 0;
argc--;
argv++;
if (argc == 0) {
fprintf(stderr,"\nError: Invalid Arguments\n");
PrintOptions_h5toh4();
return -1;
}
/* take care -h (help) option first */
{ int i;
for (i=0; i < argc; i++)
if ( HDstrcmp(argv[i],"-h") == 0 ) {
PrintOptions_h5toh4();
return 0;
}
}
/*fargv = argv; */
/* Change -m with 1 filename to as 1 filename case */
if (argc == 2 && HDstrcmp(argv[0],"-m") == 0) {
argv++;
argc--;
}
switch(argc) {
case 0:
PrintOptions_h5toh4();
break;
case 1: /* h5toh4 file1 */
h5_filename = argv[0];
if (HDstrcmp(h5_filename,"-m") == 0) {
fprintf(stderr,"\nError: Invalid Arguments\n");
PrintOptions_h5toh4();
status = -1;
break;
}
if (test_file(h5_filename,O_EXCL,292) != 0 ) { /* 292 Decimal - 0444 Octal, a+r */
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__);
status = -1;
break;
}
if (test_dir(h5_filename) != 0 ) {
fprintf(stderr,"%s: Is a directory\n",h5_filename);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__);
status = -1;
break;
}
h4_extension = HDstrdup("hdf");
h4_filename = BuildFilename(h5_filename,h4_extension);
if (h4_filename == NULL) {
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__);
status = -1;
break;
}
if (test_file(h4_filename,O_CREAT|O_EXCL,436) != 0) { /* 436 Decimal - 0664 Octal, ug+rw,o+r */
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__);
status = -1;
break;
}
status = h5toh4(h5_filename, h4_filename);
if ( status != 0 ) {
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__);
}
if (h4_filename != NULL) {
HDfree(h4_filename);
}
break;
case 2: /* h5toh4 file_in file_out */
h5_filename = argv[0];
h4_filename = argv[1];
if (HDstrcmp(h4_filename,"-m") == 0) {
fprintf(stderr,"\nError: Invalid Arguments\n");
PrintOptions_h5toh4();
status = -1;
break;
}
if (test_file(h5_filename,O_EXCL,292) != 0 ) { /* 292 Decimal - 0444 Octal, a+r */
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__);
status = -1;
break;
}
if (test_dir(h5_filename) != 0 ) {
fprintf(stderr,"%s: Is a directory\n",h5_filename);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__);
status = -1;
break;
}
if (test_file(h4_filename,O_CREAT|O_RDWR,436) != 0) { /* 436 Decimal - 0664 Octal, ug+rw,o+r */
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__);
status = -1;
break;
}
if (test_dir(h4_filename) != 0 ) {
fprintf(stderr,"%s: Is a directory\n",h4_filename);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__);
status = -1;
break;
}
status = h5toh4(h5_filename, h4_filename);
if ( status != 0 ) {
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__);
}
break;
default: /* h5toh4 -m file1 file2 file3 ... */
if (HDstrcmp(argv[0],"-m") != 0) {
fprintf(stderr,"\nError: Invalid Arguments\n");
PrintOptions_h5toh4();
status = -1;
break;
}
argv++;
argc--;
while ( argc > 0 ) {
h5_filename = argv[0];
argv++;
argc--;
if (HDstrcmp(h5_filename,"-m") == 0) {
fprintf(stderr,"\nError: Invalid Arguments\n");
PrintOptions_h5toh4();
status2 = -1;
break;
}
if (test_file(h5_filename,O_EXCL,292) != 0 ) { /* 292 Decimal - 0444 Octal, a+r */
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__);
status2 = -1;
continue;
}
if (test_dir(h5_filename) != 0 ) {
fprintf(stderr,"%s: Is a directory\n",h5_filename);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__);
status2 = -1;
continue;
}
h4_extension = HDstrdup("hdf");
h4_filename = BuildFilename(h5_filename,h4_extension);
if (h4_filename == NULL) {
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__);
status2 = -1;
continue;
}
if (test_file(h4_filename,O_CREAT|O_EXCL,436) != 0) { /* 436 Decimal - 0664 Octal, ug+rw,o+r */
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__);
status2 = -1;
continue;
}
status = h5toh4(h5_filename, h4_filename);
if ( status != 0 ) {
fprintf(stderr,"Error: Problem with %s\n",h5_filename);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "main", __FILE__, __LINE__);
status2 = status;
}
if (h4_filename != NULL) {
HDfree(h4_filename);
}
}
status = status2;
break;
}
return status;
}
/*****************************************************************************
Routine: PrintOptions_h5toh4()
Description: This routine prints the acceptable argument formats out to stderr.
Input: None
Output: output to stderr
*****************************************************************************/
void PrintOptions_h5toh4(void)
{
fprintf(stderr,"\nh5toh4 -h (gives this print-out)\n");
fprintf(stderr,"h5toh4 file.h5 file.hdf\n");
fprintf(stderr,"h5toh4 file.h5\n");
fprintf(stderr,"h5toh4 -m file1.h5 file2.h5 ...\n\n");
}
/*****************************************************************************
Routine: h5toh4()
Description: This routine translates information from a HDF5 file into a
HDF4 file.
Input: h5_filename - filename of HDF5 file,
h4_filename - filename of HDF4 file
Output: function return - error status
*****************************************************************************/
int h5toh4(char *h5_filename, char *h4_filename)
{
hid_t fid, gid;
hid_t plist=H5P_DEFAULT;
int status = 0;
int32 hfile_id;
int32 sd_id;
op_data_t op_data;
void *edata;
hid_t (*func)(void*);
find_objs_t *info = malloc(sizeof(find_objs_t));
/* open hdf5 file */
if ((fid = H5Fopen (h5_filename, H5F_ACC_RDONLY, plist)) <= 0) {
fprintf(stderr,"Error: Unable to open file %s\n",h5_filename);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__);
return (fid);
}
/* open root group */
if ((gid = H5Gopen (fid, "/")) <= 0 ) {
fprintf(stderr,"Error: Unable to open root group\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__);
return (gid);
} else {
/* open hdf4 file */
if ((hfile_id = Hopen(h4_filename, DFACC_CREATE, 0)) <= 0) {
fprintf(stderr,"Error: Unable to open file %s\n", h4_filename);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__);
return (hfile_id);
} else {
if ((sd_id = SDstart(h4_filename, DFACC_RDWR)) <= 0) {
fprintf(stderr,"Error: Unable to open file %s, using SDstart\n", h4_filename);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__);
return (sd_id);
} else {
/* Initialize Vgroup interface */
if ((status = Vstart(hfile_id)) != SUCCEED) {
fprintf(stderr,"Error: Unable to initialize Vgroup interface\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__);
status = FAIL;
}
/* allocate and initialize internal data structure */
init_table(&group_table);
init_table(&type_table);
init_table(&dset_table);
init_prefix(&prefix, prefix_len);
/* init the find_objs_t*/
info->threshold = 0;
info->prefix_len = prefix_len;
info->prefix = prefix;
info->group_table = group_table;
info->type_table = type_table;
info->dset_table = dset_table;
info->status = status;
/* Disable error reporting */
H5Eget_auto (&func, &edata);
H5Eset_auto (NULL, NULL);
/* find all objects one time */
if ((status = H5Giterate(fid, "/", NULL, (H5G_operator_t)find_objs, (void*)info)) != SUCCEED ) {
fprintf(stderr,"Error: Unable to iterate over all of the groups\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__);
}
/* Enable error reporting */
H5Eset_auto (func, edata);
#ifdef H5DUMP_DEBUG
dump_tables();
#endif
if (status != SUCCEED) {
fprintf(stderr,"Error: internal error! \n");
goto done;
}
op_data.hfile_id = hfile_id;
op_data.sd_id = sd_id;
op_data.vgroup_id = 0;
/* start at root group */
if (( status = convert_group (gid, HDstrdup("/"), &op_data)) != SUCCEED) {
fprintf(stderr,"Error: convert_group did not work for %s\n","/");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__);
status = FAIL;
}
/* Terminate access to Vgroup interface */
if ((status = Vend(hfile_id)) != SUCCEED) {
fprintf(stderr,"Error: Unable to terminate Vgroup interface\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__);
status = FAIL;
}
}
/* close hdf4 SDS */
if ((status = SDend(sd_id)) != SUCCEED) {
fprintf(stderr,"Error: Unable to close file %s, from SDstart\n", h4_filename);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__);
status = FAIL;
}
}
/* close hdf4 file */
if ((status = Hclose(hfile_id)) != SUCCEED) {
fprintf(stderr,"Error: Unable to close file %s\n", h4_filename);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__);
status = FAIL;
}
}
if ((status = H5Gclose (gid)) != SUCCEED) {
fprintf(stderr,"Error: Unable to close root group\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__);
status = FAIL;
}
if ((status = H5Fclose (fid)) != SUCCEED) {
fprintf(stderr,"Error: Unable to close file %s\n", h5_filename);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5toh4", __FILE__, __LINE__);
status = FAIL;
}
done:
free_table(&group_table);
free_table(&dset_table);
free_table(&type_table);
return status;
}
/*-------------------------------------------------------------------------
* Function: convert_group
*
* Purpose: Dump everything within the specified group
*
* Return: status
*
* Programmer: Paul Harten
*
* Modifications:
*
*-----------------------------------------------------------------------*/
herr_t
convert_group (hid_t gid, char *name, op_data_t *op_data) {
H5G_stat_t statbuf;
int32 hfile_id;
int32 vgroup_id;
int32 obj_idx;
int32 status;
int idx, flag;
hfile_id = op_data->hfile_id;
if ((vgroup_id = Vattach(hfile_id, -1, "w")) <= 0 ) {
fprintf(stderr,"Error: Unable to create new vgroup\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__);
return(vgroup_id);
}
if ((status = Vsetname(vgroup_id, name)) != SUCCEED ) {
fprintf(stderr,"Error: Unable to set name on new vgroup\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__);
return(status);
}
if ((status = Vsetclass(vgroup_id, "HDF5")) != SUCCEED ) {
fprintf(stderr,"Error: Unable to set class on new vgroup\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__);
return(status);
}
if (op_data->vgroup_id == 0) {
obj_idx = -1; /* Indexes assigned below start from 0 */
} else {
if ((obj_idx = Vinsert(op_data->vgroup_id, vgroup_id)) < 0) {
fprintf(stderr,"Error: Index %d of the new vgroup is illegal\n",(int)obj_idx);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__);
return(obj_idx);
}
}
op_data->vgroup_id = vgroup_id;
op_data->sds_id = 0;
op_data->vdata_id = 0;
op_data->obj_idx = obj_idx;
/* hard link */
if ((status = H5Gget_objinfo(gid, ".", TRUE, &statbuf)) != SUCCEED ) {
fprintf(stderr,"Error: H5Gget_objinfo() did not work\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__);
return (status);
}
if (HDstrcmp(name,"/") == 0) { /* this is the root group, just iterate */
if ((status = H5Aiterate(gid, NULL, (H5A_operator_t)convert_attr, op_data)) != SUCCEED ) {
fprintf(stderr,"Error: Unable to iterate over all of the attributes\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__);
return(status);
}
if ((status = H5Giterate(gid, ".", NULL, (H5G_operator_t)convert_all, op_data)) != SUCCEED ) {
fprintf(stderr,"Error: Unable to iterate over all of the groups\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__);
return(status);
}
} else {
if ((idx = get_table_idx(group_table, statbuf.objno)) < 0 ) {
fprintf(stderr,"Error: object not found, %s\n",name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__);
status = FAIL;
} else if((flag = get_tableflag(group_table,idx)) < 0 ) {
fprintf(stderr,"Error: get_tableflag() should never return < 0\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__);
status = FAIL;
} else if(flag == TRUE ) { /* this has already been converted, don't convert the attributes again */
if ((status = H5Giterate(gid, ".", NULL, (H5G_operator_t)convert_all, op_data)) != SUCCEED ) {
fprintf(stderr,"Error: Unable to iterate over all of the groups\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__);
return(status);
}
} else { /* flag == FALSE */
/* this is now being converted */
if ((status = set_tableflag(group_table,idx)) < 0 ) {
fprintf(stderr,"Error: set_tableflag should never return < 0\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__);
return(status);
}
if ((status = H5Aiterate(gid, NULL, (H5A_operator_t)convert_attr, op_data)) != SUCCEED ) {
fprintf(stderr,"Error: Unable to iterate over all of the attributes\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__);
return(status);
}
if ((status = H5Giterate(gid, ".", NULL, (H5G_operator_t)convert_all, op_data)) != SUCCEED ) {
fprintf(stderr,"Error: Unable to iterate over all of the groups\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__);
return(status);
}
}
}
if ((status = Vdetach(vgroup_id)) != SUCCEED ) {
fprintf(stderr,"Error: Unable to detach the new Vgroup\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_group", __FILE__, __LINE__);
status = FAIL;
}
return status;
}
/*-------------------------------------------------------------------------
* Function: convert_dataset
*
* Purpose: Convert the specified data set
*
* Return: status
*
* Programmer: Paul Harten
*
* Modifications:
*
*-----------------------------------------------------------------------*/
herr_t
convert_dataset (hid_t did, char *name, op_data_t *op_data) {
hid_t type, space, class, mem_type, type2;
/* H5G_stat_t statbuf; */
size_t typesize;
int i, idx;
int32 dim_sizes[32], start[32], edges[32];
int ndims;
int ndimf;
hsize_t dims[32], maxdims[32];
size_t dimf[4];
int permf[4];
int32 hfile_id;
int32 sd_id;
int32 sds_id;
int32 vdata_id;
int32 vgroup_id;
int32 n_values;
int32 status;
int32 h4_type;
int32 recsize;
int32 n_records, num_of_recs, record_pos;
intn nmembers;
char *buffer=NULL; /* read/write buffer*/
char fieldname_list[4096] = "\0";
char *fieldname=NULL;
hid_t fieldtype;
int32 order;
off_t offset;
off_t offset_array[512];
hid_t h4type_array[512], memtype_array[512];
int32 order_array[512];
/* hard link */
/*
if ((status = H5Gget_objinfo(did, ".", TRUE, &statbuf)) != SUCCEED ) {
fprintf(stderr,"Error: H5Gget_objinfo() did not work\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
return (status);
}
*/
if ((type = H5Dget_type(did)) <= 0) {
fprintf(stderr, "Error: H5Dget_type() didn't return appropriate value.\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
status = FAIL;
return status;
}
if ((space = H5Dget_space(did)) <= 0) {
fprintf(stderr, "Error: H5Dget_space() didn't return appropriate value.\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
status = FAIL;
return status;
}
if ((n_values = H5Sget_simple_extent_npoints(space)) <= 0) {
fprintf(stderr, "Error: H5Sget_simple_extent_npoints() returned inappropriate value.\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
status = FAIL;
return status;
}
if ((ndims = H5Sget_simple_extent_dims(space,dims,maxdims)) < 0 ) {
fprintf(stderr, "Error: Problems getting ndims, dims, and maxdims of dataset\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
status = ndims;
return status;
}
if ((class = H5Tget_class(type)) < 0 ) {
fprintf(stderr,"Error: problem with getting class\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
status = class;
return status;
}
switch (class) {
case H5T_INTEGER:
case H5T_FLOAT:
sd_id = op_data->sd_id;
#define NEWWAY
#ifdef NEWWAY
if (FAIL==h5atomic_type_to_h4type(type, &mem_type, &typesize, &h4_type)){
fprintf(stderr, "Error: Problems translating h5 type to h4 type\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
status = FAIL;
break;
}
#else
if ((h4_type = h5type_to_h4type(type)) == FAIL ) {
fprintf(stderr, "Error: Problems translating h5 type to h4 type\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
status = FAIL;
break;
}
if ((mem_type = h4type_to_memtype(h4_type)) == FAIL ) {
fprintf(stderr, "Error: Problems translating h4 type to mem type\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
status = FAIL;
return status;
}
if ((typesize = H5Tget_size(mem_type)) <= 0) {
fprintf(stderr, "Error: H5Tget_size() didn't return appropriate value.\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
status = FAIL;
break;
}
#endif
if ((buffer = HDmalloc(n_values*typesize)) == NULL) {
fprintf(stderr, "Error: Problems with HDmalloc of memory space\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
status = FAIL;
break;
}
if ((status = H5Dread(did, mem_type, space, space, H5P_DEFAULT, buffer)) != SUCCEED) {
fprintf(stderr, "Error: Problems with H5Dread\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
status = FAIL;
break;
}
for (i=0;i<ndims;i++) {
if (maxdims[i] == H5S_UNLIMITED) {
if ( i == 0 ) {
dim_sizes[0] = 0; /* this is how HDF4 communicates unlimited dimension */
} else {
dim_sizes[i] = (int32)dims[i];
}
} else {
dim_sizes[i] = (int32)maxdims[i];
}
start[i] = 0;
edges[i] = (int32)dims[i];
}
if ((sds_id = SDcreate(sd_id, name, h4_type, ndims, dim_sizes)) <= 0 ) {
fprintf(stderr, "Error: Unable to create SDS %s.\n",name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
status = FAIL;
break;
}
op_data->sds_id = sds_id;
if ((status = SDwritedata(sds_id, start, NULL, edges, buffer)) != SUCCEED ) {
fprintf(stderr, "Error: Unable to write SDS %s.\n",name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
}
if ((status = H5Aiterate(did, NULL, (H5A_operator_t)convert_attr, op_data)) < 0 ) {
fprintf(stderr,"Error: iterate over attributes\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
}
if ((status = SDendaccess(sds_id)) != SUCCEED ) {
fprintf(stderr, "Error: Unable to end access to SDS %s.\n",name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
}
break;
case H5T_TIME:
fprintf(stderr,"Warning: H5T_TIME not yet implemented.\n");
break;
case H5T_STRING:
if (ndims==1) {
convert_dataset_string(did, name, op_data);
} else {
fprintf(stderr,"Warning: HDF5 datasets of H5T_STRING type with ndims > 1 are not converted.\n");
}
break;
case H5T_BITFIELD:
fprintf(stderr,"Warning: H5T_BITFIELD not yet implemented.\n");
break;
case H5T_OPAQUE:
fprintf(stderr,"Warning: H5T_OPAQUE not yet implemented.\n");
break;
case H5T_COMPOUND:
if (ndims==1) {
if ((nmembers = H5Tget_nmembers(type)) <= 0 ) {
fprintf(stderr, "Error: Unable to get information about compound datatype %d\n",nmembers);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
break;
}
offset = 0;
for (idx=0;idx<nmembers;idx++) {
if ((ndimf = H5Tget_member_dims(type, idx, dimf, permf)) < 0 || ndimf > 4 ) {
fprintf(stderr, "Error: rank of members of compound type should not be %d\n",ndimf);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
return FAIL;
}
if ((fieldtype = H5Tget_member_type(type, idx)) < 0 ) {
fprintf(stderr,"Error: H5 datasets of H5T_COMPOUND type with fieldtype %d, idx %d.\n",fieldtype,idx);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
break;
}
#ifdef NEWWAY
if (FAIL==h5atomic_type_to_h4type(fieldtype, &mem_type, &typesize, &h4_type)){
fprintf(stderr, "Error: Problems translating h5 type to h4 type\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
status = FAIL;
break;
}
#else
if ((h4_type = h5type_to_h4type(fieldtype)) < 0 ) {
fprintf(stderr, "Error: Problems translating h5 type to h4 type\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
break;
}
if ((mem_type = h4type_to_memtype(h4_type)) == FAIL ) {
fprintf(stderr, "Error: Problems translating h4 type to mem type\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
return FAIL;
}
if ((typesize = H5Tget_size(mem_type)) <= 0) {
fprintf(stderr, "Error: H5Tget_size() didn't return appropriate value.\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
status = FAIL;
break;
}
#endif
order = 1;
if (ndimf > 0) {
order *= dimf[permf[0]];
if (ndimf > 1) {
order *= dimf[permf[1]];
if (ndimf > 2) {
order *= dimf[permf[2]];
if (ndimf > 3) {
order *= dimf[permf[3]];
}
}
}
}
h4type_array[idx] = h4_type; /* used for VSfdefine */
memtype_array[idx] = mem_type; /* used during the build of the memory compound type */
offset_array[idx] = offset; /* used during the build of the memory compound type */
order_array[idx] = order; /* used for VSfdefine */
offset += order * typesize; /* calculating packed size of memory compound type */
}
hfile_id = op_data->hfile_id;
vgroup_id = op_data->vgroup_id;
if ((vdata_id = VSattach(hfile_id, -1, "w")) <= 0 ) {
fprintf(stderr, "Error: Unable to create vdata %s.\n",name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
status = FAIL;
break;
}
/*
* This step is done during the convert_shared_dataset() call instead of here.
*
if ((idx = Vinsert(vgroup_id, vdata_id)) < 0 ) {
fprintf(stderr, "Error: Unable to insert vdata %s.\n",name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
status = FAIL;
break;
}
*/
op_data->vdata_id = vdata_id;
if ((status = VSsetname(vdata_id, name)) != SUCCEED ) {
fprintf(stderr, "Error: Unable to set vdata name %s.\n",name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
break;
}
if ((status = VSsetclass(vdata_id, "HDF5")) != SUCCEED ) {
fprintf(stderr, "Error: Unable to set class on vdata %s\n", name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
break;
}
if ((type2 = H5Tcreate(H5T_COMPOUND, (size_t)offset)) <= 0 ) {
fprintf(stderr, "Error: unable to execute H5Tcreate()\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
break;
}
for (idx=0;idx<nmembers;idx++) {
if ((ndimf = H5Tget_member_dims(type, idx, dimf, permf)) < 0 || ndimf > 4 ) {
fprintf(stderr, "Error: rank of members of compound type should not be %d\n",ndimf);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
return FAIL;
}
if ((fieldname = H5Tget_member_name(type, idx)) == NULL ) {
fprintf(stderr, "Error: Unable to get fieldname for compound type %d, idx %d\n", type, idx);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
break;
}
if ((offset = H5Tget_offset(memtype_array[idx])) < 0 || offset >= 128 ) {
fprintf(stderr, "Error: H5Tget_offset() is returning a bad value %d\n",(int)offset);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
return FAIL;
}
if (ndimf == 0 ) {
if ((status = H5Tinsert(type2,fieldname,offset_array[idx]+offset,memtype_array[idx])) != SUCCEED ) {
fprintf(stderr, "Error: Problems inserting field into compound datatype\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
return FAIL;
}
} else {
if ((status = H5Tinsert_array(type2,fieldname,offset_array[idx]+offset,ndimf,dimf,permf,
memtype_array[idx])) != SUCCEED ) {
fprintf(stderr, "Error: Problems inserting array field into compound datatype\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
return FAIL;
}
}
if ((status = VSfdefine(vdata_id, fieldname, h4type_array[idx], order_array[idx])) != SUCCEED ) {
fprintf(stderr, "Error: Unable to set field %d\n", idx);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
break;
}
strcat(fieldname_list,fieldname);
if (idx<nmembers-1) {
strcat(fieldname_list,", ");
}
if (fieldname != NULL) {
HDfree(fieldname);
}
}
if ((status = VSsetfields(vdata_id, fieldname_list)) != SUCCEED ) {
fprintf(stderr, "Error: Unable to set fieldname list %s\n", name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
break;
}
if ((status = VSsetinterlace(vdata_id, FULL_INTERLACE)) != SUCCEED ) {
fprintf(stderr, "Error: Unable to set FULL_INTERLACE mode, status %d\n", (int)status);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
break;
}
if ((recsize = H5Tget_size(type2)) <= 0 ) {
fprintf(stderr, "Error: Unable to get record size %d\n", (int)recsize);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
break;
}
/*
Since the space is rank 1, n_records does not depend on maxdims.
*/
n_records = n_values;
if ((buffer = HDmalloc(n_records*recsize)) == NULL) {
fprintf(stderr, "Error: Problems with HDmalloc of memory space\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
status = FAIL;
break;
}
if ((status = H5Dread(did, type2, space, space, H5P_DEFAULT, buffer)) != SUCCEED) {
fprintf(stderr, "Error: Problems with H5Dread\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
status = FAIL;
break;
}
if ((status = H5Tclose(type2)) < 0 ) {
fprintf(stderr,"Error: closing type\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
status = FAIL;
break;
}
if ((record_pos = VSseek(vdata_id, 0)) != 0 ) {
fprintf(stderr, "Error: Could not seek the beginning of the Vdata, %d\n", (int)record_pos);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
status = record_pos;
break;
}
if ((num_of_recs = VSwrite(vdata_id, (void *)buffer, n_records, FULL_INTERLACE)) != n_records ) {
fprintf(stderr, "Error: Only able to write %d of %d records\n", (int)num_of_recs, (int)n_records);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
status = num_of_recs;
break;
}
/* there are only vdata attributes, no field attributes */
if ((status = H5Aiterate(did, NULL, (H5A_operator_t)convert_attr, op_data)) < 0 ) {
fprintf(stderr,"Error: iterate over attributes\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
break;
}
if ((status = VSdetach(vdata_id)) != SUCCEED ) {
fprintf(stderr, "Error: Unable to detach to vdata %s.\n",name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
break;
}
} else {
fprintf(stderr,"Warning: HDF5 datasets of H5T_COMPOUND type with ndims > 1 are not converted.\n");
}
break;
default:
fprintf(stderr,"Error: %d class not found\n",class);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
}
if ((status = H5Tclose(type)) < 0 ) {
fprintf(stderr,"Error: closing type\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
}
if ((status = H5Sclose(space)) < 0 ) {
fprintf(stderr,"Error: closing space\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
}
if (buffer != NULL) {
HDfree(buffer);
}
return status;
}
/*-------------------------------------------------------------------------
* Function: convert_attr
*
* Purpose: dump the attribute
*
* Return: Success: SUCCEED
*
* Failure: FAIL
*
* Programmer: Paul Harten
*
* Modifications:
*
*-----------------------------------------------------------------------*/
herr_t
convert_attr (hid_t attr, char *attr_name, op_data_t *op_data)
{
hid_t attr_id, type, space, mem_type, class;
size_t typesize;
char *attr_values=NULL;
int32 status;
int32 h4_type;
int32 sds_id;
int32 vdata_id;
int32 vgroup_id;
int32 n_values;
int32 order;
hid_t fxdlenstr;
size_t lenstr;
H5T_cset_t cset;
H5T_str_t strpad;
sds_id = op_data->sds_id;
vdata_id = op_data->vdata_id;
vgroup_id = op_data->vgroup_id;
if ((attr_id = H5Aopen_name (attr, attr_name))>= 0) {
if ((type = H5Aget_type(attr_id)) <= 0) {
fprintf(stderr, "Error: H5Aget_type() didn't return appropriate value.\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = FAIL;
return status;
}
if ((class = H5Tget_class(type)) < 0 ) {
fprintf(stderr,"Error: problem with getting class\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = class;
return status;
}
switch (class) {
case H5T_INTEGER:
case H5T_FLOAT:
if ((space = H5Aget_space(attr_id)) <= 0) {
fprintf(stderr, "Error: H5Dget_space() didn't return appropriate value.\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = FAIL;
return status;
}
if ((n_values = H5Sget_simple_extent_npoints(space)) <= 0) {
fprintf(stderr, "Error: H5sget_simple_extent_npoints() didn't return correct value.\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = FAIL;
return status;
}
#ifdef NEWWAY
if (FAIL==h5atomic_type_to_h4type(type, &mem_type, &typesize, &h4_type)){
fprintf(stderr, "Error: Problems translating h5 type to h4 type\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
status = FAIL;
break;
}
#else
if ((h4_type = h5type_to_h4type(type)) == FAIL ) {
fprintf(stderr, "Error: Problems translating h5 type to h4 type\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = FAIL;
return status;
}
if ((mem_type = h4type_to_memtype(h4_type)) == FAIL ) {
fprintf(stderr, "Error: Problems translating h4 type to mem type\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = FAIL;
return status;
}
if ((typesize = H5Tget_size(mem_type)) <= 0) {
fprintf(stderr, "Error: H5Tget_size() didn't return appropriate value.\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = FAIL;
return status;
}
#endif
if ((attr_values = HDmalloc(n_values*typesize)) == NULL) {
fprintf(stderr, "Error: Problems with HDmalloc of memory space\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = FAIL;
return status;
}
if ((status = H5Aread(attr_id, mem_type, attr_values)) != SUCCEED) {
fprintf(stderr, "Error: Problems with H5Aread\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = FAIL;
return status;
}
if (sds_id != 0) {
if ((status = SDsetattr(sds_id, attr_name, h4_type, n_values, attr_values)) != SUCCEED ) {
fprintf(stderr, "Error: Unable to set %s attribute.\n",attr_name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = FAIL;
return status;
}
} else if (vdata_id != 0) {
if ((status = VSsetattr(vdata_id, -1, attr_name, h4_type, n_values, attr_values)) != SUCCEED ) {
fprintf(stderr, "Error: Unable to set %s attribute.\n",attr_name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = FAIL;
return status;
}
} else {
if ((status = Vsetattr(vgroup_id, attr_name, h4_type, n_values, attr_values)) != SUCCEED ) {
fprintf(stderr, "Error: Unable to set %s attribute.\n",attr_name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = FAIL;
return status;
}
}
if ((status = H5Sclose(space)) != SUCCEED ) {
fprintf(stderr, "Error: Problems closing H5Sclose\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = FAIL;
return status;
}
if ((status = H5Aclose(attr_id)) != SUCCEED ) {
fprintf(stderr, "Error: Problems closing H5Aclose\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = FAIL;
return status;
}
if (attr_values != NULL) {
HDfree(attr_values);
}
status = SUCCEED;
break;
case H5T_TIME:
fprintf(stderr,"Warning: H5T_TIME attribute not yet implemented.\n");
break;
case H5T_STRING:
fxdlenstr = type;
h4_type = DFNT_CHAR;
if ((space = H5Aget_space(attr_id)) <= 0) {
fprintf(stderr, "Error: H5Dget_space() didn't return appropriate value.\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = FAIL;
return status;
}
if ((n_values = H5Sget_simple_extent_npoints(space)) <= 0) {
fprintf(stderr, "Error: H5sget_simple_extent_npoints() didn't return correct value.\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = FAIL;
return status;
}
if ((mem_type = H5Tcopy(H5T_C_S1)) == FAIL ) {
fprintf(stderr, "Error: Problems translating h4 type to mem type\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = mem_type;
return status;
}
if ((lenstr = H5Tget_size(fxdlenstr)) <= 0 ) {
fprintf(stderr, "Error: size of fixed length string type should not be %d\n",(int)lenstr);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
return lenstr;
}
if ((status = H5Tset_size(mem_type,lenstr)) != SUCCEED ) {
fprintf(stderr, "Error: Problem with H5Tset_size()\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
return status;
}
strpad = H5Tget_strpad(fxdlenstr);
if ((strpad != H5T_STR_NULLTERM) && (strpad != H5T_STR_NULLPAD) && (strpad != H5T_STR_SPACEPAD)) {
fprintf(stderr, "Error: Invalid string padding value, %d\n",(int)strpad);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
return strpad;
}
if ((status = H5Tset_strpad(mem_type, H5T_STR_SPACEPAD)) != SUCCEED ) {
fprintf(stderr, "Error: Problem with H5Tset_strpad()\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
return status;
}
if ((cset = H5Tget_cset(fxdlenstr)) != H5T_CSET_ASCII ) {
fprintf(stderr, "Error: cset value != %d\n",(int)H5T_CSET_ASCII);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
return cset;
}
if ((status = H5Tset_cset(mem_type,cset)) != SUCCEED ) {
fprintf(stderr, "Error: Problem with H5Tset_cset()\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
return status;
}
order = n_values * lenstr;
if ((attr_values = HDmalloc(order)) == NULL) {
fprintf(stderr, "Error: Problems with HDmalloc of memory space\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = FAIL;
return status;
}
if ((status = H5Aread(attr_id, mem_type, attr_values)) != SUCCEED) {
fprintf(stderr, "Error: Problems with H5Aread\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = FAIL;
return status;
}
if (sds_id != 0) {
if ((status = SDsetattr(sds_id, attr_name, h4_type, order, attr_values)) != SUCCEED ) {
fprintf(stderr, "Error: Unable to set %s attribute.\n",attr_name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = FAIL;
return status;
}
} else if (vdata_id != 0) {
if ((status = VSsetattr(vdata_id, -1, attr_name, h4_type, order, attr_values)) != SUCCEED ) {
fprintf(stderr, "Error: Unable to set %s attribute.\n",attr_name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = FAIL;
return status;
}
} else {
if ((status = Vsetattr(vgroup_id, attr_name, h4_type, order, attr_values)) != SUCCEED ) {
fprintf(stderr, "Error: Unable to set %s attribute.\n",attr_name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = FAIL;
return status;
}
}
if ((status = H5Sclose(space)) != SUCCEED ) {
fprintf(stderr, "Error: Problems closing H5Sclose\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = FAIL;
return status;
}
if ((status = H5Aclose(attr_id)) != SUCCEED ) {
fprintf(stderr, "Error: Problems closing H5Aclose\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = FAIL;
return status;
}
if (attr_values != NULL) {
HDfree(attr_values);
}
status = SUCCEED;
break;
case H5T_BITFIELD:
fprintf(stderr,"Warning: H5T_BITFIELD attribute not yet implemented.\n");
break;
case H5T_OPAQUE:
fprintf(stderr,"Warning: H5T_OPAQUE attribute not yet implemented.\n");
break;
case H5T_COMPOUND:
fprintf(stderr,"Warning: H5T_COMPOUND attribute not implemented.\n");
break;
default:
fprintf(stderr,"Error: %d class not found\n",class);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = FAIL;
}
if ((status = H5Tclose(type)) != SUCCEED ) {
fprintf(stderr, "Error: Problems closing H5Tclose\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_attr", __FILE__, __LINE__);
status = FAIL;
return status;
}
} else {
status = FAIL;
}
return status;
}
/*-------------------------------------------------------------------------
* Function: convert_all
*
* Purpose: Dump everything in the specified object
*
* Return: Success: SUCCEED
*
* Failure: FAIL
*
* Programmer: Paul Harten
*
* Modifications:
*
*-----------------------------------------------------------------------*/
herr_t
convert_all (hid_t group, char *name, op_data_t *op_data)
{
hid_t obj;
H5G_stat_t statbuf, statbuf2;
int status;
op_data_t op_data_save;
int32 vgroup_id;
int32 sd_id;
int32 sds_id;
int idx, flag;
void *edata;
hid_t (*func)(void*);
op_data_save = *op_data;
vgroup_id = op_data->vgroup_id;
sd_id = op_data->sd_id;
sds_id = op_data->sds_id;
if ((status = H5Gget_objinfo(group, name, FALSE, &statbuf)) != SUCCEED ) {
fprintf(stderr,"Error: H5Gget_objinfo() did not work\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
return (status);
}
statbuf2 = statbuf;
switch (statbuf.type) {
case H5G_LINK: /* this is a soft link only */
/* Disable error reporting */
H5Eget_auto (&func, &edata);
H5Eset_auto (NULL, NULL);
/* test to see if object exists */
if ((status = H5Gget_objinfo(group, name, TRUE, NULL)) != SUCCEED ) {
fprintf(stderr,"Warning: the object pointed to by the symbolic link \"%s\" does not exist.\n",name);
}
/* Enable error reporting */
H5Eset_auto (func, edata);
if (status != SUCCEED) {
break;
}
/* follow link for type */
if ((status = H5Gget_objinfo(group, name, TRUE, &statbuf)) != SUCCEED ) {
fprintf(stderr,"Error: H5Gget_objinfo() did not work\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
return (status);
}
if (statbuf.type==H5G_DATASET ) {
if ((idx = get_table_idx(dset_table, statbuf.objno)) < 0 ) {
fprintf(stderr,"Error: object not found\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
} else if((flag = get_tableflag(dset_table,idx)) < 0 ) {
fprintf(stderr,"Error: get_tableflag() should never return < 0\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
} else if(flag == TRUE ) { /* this has already been converted, add as a tag/ref */
if ((obj = H5Dopen (group, name)) <= 0 ) {
fprintf(stderr,"Error: Unable to open H5 dataset\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
return (obj);
} else {
if ((status = convert_shared_dataset(obj, idx, op_data)) != SUCCEED ) {
fprintf(stderr,"Error: Unable to convert to tag/ref\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
}
}
if ((status = H5Dclose(obj)) != SUCCEED) {
fprintf(stderr,"Error: Unable to close H5 dataset %s\n",name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
break;
}
} else { /* flag == FALSE */
if ((obj = H5Dopen (group, name)) <= 0 ) {
fprintf(stderr,"Error: Unable to open H5 dataset\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
return (obj);
} else {
if (( status = convert_dataset (obj, name, op_data)) != SUCCEED) {
fprintf(stderr,"Error: convert_dataset did not work for %s\n",name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
break;
}
if ((status = convert_shared_dataset(obj, idx, op_data)) != SUCCEED ) {
fprintf(stderr,"Error: Unable to convert to tag/ref\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
}
if(( status = set_tableflag(dset_table,idx)) != SUCCEED ) {
fprintf(stderr,"Error: set_tableflag() did not work for %s\n", name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
break;
}
}
if ((status = H5Dclose(obj)) != SUCCEED) {
fprintf(stderr,"Error: Unable to close H5 dataset %s\n",name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
break;
}
}
} else if (statbuf.type==H5G_GROUP ) {
if ((idx = get_table_idx(group_table, statbuf.objno)) < 0 ) {
fprintf(stderr,"Error: object not found\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
} else if((flag = get_tableflag(group_table,idx)) < 0 ) {
fprintf(stderr,"Error: get_tableflag() should never return < 0\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
} else if(flag == TRUE ) {
if (( status = convert_shared_group (group, idx, op_data)) != SUCCEED) {
fprintf(stderr,"Error: convert_group did not work for %s\n",name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
break;
}
} else { /* flag == FALSE */
if ((obj = H5Gopen (group, name)) <= 0 ) {
fprintf(stderr,"Error: Unable to open group\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
return (obj);
} else {
if (( status = convert_group (obj, name, op_data)) != SUCCEED) {
fprintf(stderr,"Error: convert_group did not work for %s\n",name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
break;
}
}
if ((status = H5Gclose(obj)) != SUCCEED) {
fprintf(stderr,"Error: Unable to close group %s\n",name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
break;
}
}
}
break;
case H5G_GROUP:
if ((idx = get_table_idx(group_table, statbuf.objno)) < 0 ) {
fprintf(stderr,"Error: object not found\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
} else if((flag = get_tableflag(group_table,idx)) < 0 ) {
fprintf(stderr,"Error: get_tableflag() should never return < 0\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
} else if(flag == TRUE ) {
if (( status = convert_shared_group (group, idx, op_data)) != SUCCEED) {
fprintf(stderr,"Error: convert_group did not work for %s\n",name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
break;
}
} else { /* flag == FALSE */
if ((obj = H5Gopen (group, name)) <= 0 ) {
fprintf(stderr,"Error: Unable to open group\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
return (obj);
} else {
if (( status = convert_group (obj, name, op_data)) != SUCCEED) {
fprintf(stderr,"Error: convert_group did not work for %s\n",name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
break;
}
}
if ((status = H5Gclose(obj)) != SUCCEED) {
fprintf(stderr,"Error: Unable to close group %s\n",name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
break;
}
}
break;
case H5G_DATASET:
if ((idx = get_table_idx(dset_table, statbuf.objno)) < 0 ) {
fprintf(stderr,"Error: object not found\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
} else if((flag = get_tableflag(dset_table,idx)) < 0 ) {
fprintf(stderr,"Error: get_tableflag() should never return < 0\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
} else if(flag == TRUE ) { /* this has already been converted, add as a tag/ref */
if ((obj = H5Dopen (group, name)) <= 0 ) {
fprintf(stderr,"Error: Unable to open H5 dataset\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
return (obj);
} else {
if ((status = convert_shared_dataset(obj, idx, op_data)) != SUCCEED ) {
fprintf(stderr,"Error: Unable to convert to tag/ref\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
}
}
if ((status = H5Dclose(obj)) != SUCCEED) {
fprintf(stderr,"Error: Unable to close H5 dataset %s\n",name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
break;
}
} else { /* flag == FALSE */
if ((obj = H5Dopen (group, name)) <= 0 ) {
fprintf(stderr,"Error: Unable to open H5 dataset\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
return (obj);
} else {
if (( status = convert_dataset (obj, name, op_data)) != SUCCEED) {
fprintf(stderr,"Error: convert_dataset did not work for %s\n",name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
break;
}
if ((status = convert_shared_dataset(obj, idx, op_data)) != SUCCEED ) {
fprintf(stderr,"Error: Unable to convert to tag/ref\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
}
if(( status = set_tableflag(dset_table,idx)) != SUCCEED ) {
fprintf(stderr,"Error: set_tableflag() did not work for %s\n", name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
break;
}
}
if ((status = H5Dclose(obj)) != SUCCEED) {
fprintf(stderr,"Error: Unable to close H5 dataset %s\n",name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_all", __FILE__, __LINE__);
status = FAIL;
break;
}
}
break;
case H5G_TYPE:
/* object is ignored */
break;
default:
fprintf (stderr,"Unknown Object %s\n", name);
status = FAIL;
break;
}
*op_data = op_data_save;
return SUCCEED;
}
/*-------------------------------------------------------------------------
* Function: convert_shared_dataset
*
* Purpose: Handle a shared dataset which has already been converted.
*
* Return: Success: SUCCEED
*
* Failure: FAIL
*
* Programmer: Paul Harten
*
* Modifications:
*
*-----------------------------------------------------------------------*/
herr_t
convert_shared_dataset(hid_t did, int idx, op_data_t *op_data)
{
int status=SUCCEED;
int32 vgroup_id;
char *dataset_name=NULL;
char *dataset_name2=NULL;
int32 hfile_id;
int32 sd_id;
int32 sds_id;
int32 sds_ref;
int32 vdata_ref;
int32 sds_index;
int32 numtagref;
hid_t type, space, class;
hsize_t dims[32], maxdims[32];
int n_values, ndims;
vgroup_id = op_data->vgroup_id;
if ((dataset_name = get_objectname(dset_table, idx)) == NULL ) {
fprintf(stderr,"Error: get_objectname() did not work\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__);
return (status);
}
if ((dataset_name2 = strrchr(dataset_name,'/')) == NULL) { /* find last "/" in dataset_name */
dataset_name2 = dataset_name; /* no "/"s were found */
} else {
dataset_name2 = dataset_name2 + sizeof(char); /* 1 character past last "/" */
}
if ((type = H5Dget_type(did)) <= 0) {
fprintf(stderr, "Error: H5Dget_type() didn't return appropriate value.\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__);
status = FAIL;
return status;
}
if ((space = H5Dget_space(did)) <= 0) {
fprintf(stderr, "Error: H5Dget_space() didn't return appropriate value.\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__);
status = FAIL;
return status;
}
if ((n_values = H5Sget_simple_extent_npoints(space)) <= 0) {
fprintf(stderr, "Error: H5Sget_simple_extent_npoints() returned inappropriate value.\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__);
status = FAIL;
return status;
}
if ((ndims = H5Sget_simple_extent_dims(space,dims,maxdims)) < 0 ) {
fprintf(stderr, "Error: Problems getting ndims, dims, and maxdims of dataset\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__);
status = ndims;
return status;
}
if ((class = H5Tget_class(type)) < 0 ) {
fprintf(stderr,"Error: problem with getting class\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__);
status = class;
return status;
}
switch (class) {
case H5T_INTEGER:
case H5T_FLOAT:
sd_id = op_data->sd_id;
if ((sds_index = SDnametoindex(sd_id, dataset_name2)) < 0 ) {
fprintf (stderr,"Error: Problem with SDnametoindex().\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__);
return (sds_index);
}
if ((sds_id = SDselect(sd_id, sds_index)) < 0 ) {
fprintf (stderr,"Error: Problem with SDselect().\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__);
return (sds_id);
}
if ((sds_ref = SDidtoref(sds_id)) < 0 ) {
fprintf (stderr,"Error: Problem with SDidtoref().\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__);
return (sds_ref);
}
if ((numtagref = Vaddtagref(vgroup_id, DFTAG_NDG, sds_ref)) < 0 ) {
fprintf (stderr,"Error: Problem with Vaddtagref().\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__);
return (numtagref);
}
break;
case H5T_TIME:
fprintf(stderr,"Error: H5T_TIME not yet implemented.\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__);
break;
case H5T_STRING:
hfile_id = op_data->hfile_id;
if (ndims==1) {
if ((vdata_ref = VSfind(hfile_id,dataset_name2)) <= 0 ) {
fprintf (stderr,"Error: Problem with VSfind().\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__);
return (vdata_ref);
}
if ((numtagref = Vaddtagref(vgroup_id, DFTAG_VH, vdata_ref)) < 0 ) {
fprintf (stderr,"Error: Problem with Vaddtagref().\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__);
return (numtagref);
}
}
break;
case H5T_BITFIELD:
fprintf(stderr,"Error: H5T_BITFIELD not yet implemented.\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__);
break;
case H5T_OPAQUE:
fprintf(stderr,"Error: H5T_OPAQUE not yet implemented.\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__);
break;
case H5T_COMPOUND:
hfile_id = op_data->hfile_id;
if (ndims==1) {
if ((vdata_ref = VSfind(hfile_id,dataset_name2)) <= 0 ) {
fprintf (stderr,"Error: Problem with VSfind().\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__);
return (vdata_ref);
}
if ((numtagref = Vaddtagref(vgroup_id, DFTAG_VH, vdata_ref)) < 0 ) {
fprintf (stderr,"Error: Problem with Vaddtagref().\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__);
return (numtagref);
}
}
break;
default:
fprintf(stderr,"Error: %d class not found\n",class);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__);
status = FAIL;
}
if ((status = H5Tclose(type)) < 0 ) {
fprintf(stderr,"Error: closing type\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset", __FILE__, __LINE__);
status = FAIL;
}
if (dataset_name != NULL) {
HDfree (dataset_name);
}
return status;
}
/*-------------------------------------------------------------------------
* Function: convert_shared_group
*
* Purpose: Handle a shared group which has already been converted.
*
* Return: status
*
* Programmer: Paul Harten
*
* Modifications:
*
*-----------------------------------------------------------------------*/
herr_t
convert_shared_group (hid_t group, int idx, op_data_t *op_data) {
int32 hfile_id;
int32 vgroup_id;
int32 vgroup_ref;
int32 numtagref;
int32 status = SUCCEED;
hid_t group2;
char *group_name=NULL;
char *group_name2=NULL;
char vgroup_name[VGNAMELENMAX];
group2 = group;
hfile_id = op_data->hfile_id;
if ((group_name = get_objectname(group_table, idx)) == NULL ) {
fprintf(stderr,"Error: get_objectname() did not work\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_group", __FILE__, __LINE__);
status = FAIL;
return (status);
}
if ((group_name2 = strrchr(group_name,'/')) == NULL) { /* find last "/" in group_name */
group_name2 = group_name; /* no "/"s were found */
} else {
group_name2 = group_name2 + sizeof(char); /* 1 character past last "/" */
}
if ((status = Vgetname(op_data->vgroup_id,vgroup_name)) < 0 ) {
fprintf (stderr,"Error: Problem with Vfind().\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_group", __FILE__, __LINE__);
return (status);
}
if ((vgroup_ref = Vfind(hfile_id,vgroup_name)) <= 0 ) {
fprintf (stderr,"Error: Problem with Vfind().\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_group", __FILE__, __LINE__);
return (vgroup_ref);
}
if ((vgroup_id = Vattach(hfile_id, vgroup_ref, "w")) <= 0 ) {
fprintf(stderr,"Error: Unable to create new vgroup\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_group", __FILE__, __LINE__);
return(vgroup_id);
}
if ((vgroup_ref = Vfind(hfile_id,group_name2)) <= 0 ) {
fprintf (stderr,"Error: Problem with Vfind().\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_group", __FILE__, __LINE__);
return (vgroup_ref);
}
if ((numtagref = Vaddtagref(vgroup_id, DFTAG_VG, vgroup_ref)) < 0 ) {
fprintf (stderr,"Error: Problem with Vaddtagref().\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_group", __FILE__, __LINE__);
return (numtagref);
}
if ((status = Vdetach(vgroup_id)) != SUCCEED ) {
fprintf(stderr,"Error: Unable to detach the new Vgroup\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_group", __FILE__, __LINE__);
status = FAIL;
}
if (group_name != NULL) {
HDfree(group_name);
}
return status;
}
/*-------------------------------------------------------------------------
* Function: convert_dataset_string
*
* Purpose: convert a dataset with string elements.
*
* Return: status
*
* Programmer: Paul Harten
*
* Modifications:
*
*-----------------------------------------------------------------------*/
herr_t
convert_dataset_string (hid_t did, char *name, op_data_t *op_data) {
int32 hfile_id;
int32 vgroup_id;
int32 vdata_id;
hid_t fxdlenstr, space, class, mem_type;
const char* fieldname = {"string"};
const char* fieldname_list = fieldname;
char *buffer;
int32 status;
int32 h4_type;
int32 recsize, n_records, n_values, num_of_recs, record_pos;
size_t lenstr;
H5T_cset_t cset;
H5T_str_t strpad;
if ((fxdlenstr = H5Dget_type(did)) <= 0) {
fprintf(stderr, "Error: H5Dget_type() didn't return appropriate value.\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__);
status = FAIL;
return status;
}
if ((class = H5Tget_class(fxdlenstr)) != H5T_STRING ) {
fprintf(stderr,"Error: problem with getting class\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_shared_dataset", __FILE__, __LINE__);
status = class;
return status;
}
if ((space = H5Dget_space(did)) <= 0) {
fprintf(stderr, "Error: H5Dget_space() didn't return appropriate value.\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__);
status = FAIL;
return status;
}
if ((n_values = H5Sget_simple_extent_npoints(space)) <= 0) {
fprintf(stderr, "Error: H5Sget_simple_extent_npoints() returned inappropriate value.\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__);
status = FAIL;
return status;
}
h4_type = DFNT_CHAR;
if ((mem_type = H5Tcopy(H5T_C_S1)) == FAIL ) {
fprintf(stderr, "Error: Problems translating h4 type to mem type\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__);
status = mem_type;
return status;
}
if ((lenstr = H5Tget_size(fxdlenstr)) <= 0 ) {
fprintf(stderr, "Error: size of fixed length string type should not be %d\n",(int)lenstr);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__);
return lenstr;
}
if ((status = H5Tset_size(mem_type,lenstr)) != SUCCEED ) {
fprintf(stderr, "Error: Problem with H5Tset_size()\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__);
return status;
}
strpad = H5Tget_strpad(fxdlenstr);
if ((strpad != H5T_STR_NULLTERM) && (strpad != H5T_STR_NULLPAD) && (strpad != H5T_STR_SPACEPAD)) {
fprintf(stderr, "Error: Invalid string padding value, %d\n",(int)strpad);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__);
return strpad;
}
if ((status = H5Tset_strpad(mem_type, strpad)) != SUCCEED ) {
fprintf(stderr, "Error: Problem with H5Tset_strpad()\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__);
return status;
}
if ((cset = H5Tget_cset(fxdlenstr)) != H5T_CSET_ASCII ) {
fprintf(stderr, "Error: cset value != %d\n",(int)H5T_CSET_ASCII);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__);
return cset;
}
if ((status = H5Tset_cset(mem_type,cset)) != SUCCEED ) {
fprintf(stderr, "Error: Problem with H5Tset_cset()\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__);
return status;
}
hfile_id = op_data->hfile_id;
vgroup_id = op_data->vgroup_id;
if ((vdata_id = VSattach(hfile_id, -1, "w")) <= 0 ) {
fprintf(stderr, "Error: Unable to create vdata %s.\n",name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__);
status = FAIL;
return status;
}
op_data->vdata_id = vdata_id;
if ((status = VSsetname(vdata_id, name)) != SUCCEED ) {
fprintf(stderr, "Error: Unable to set vdata name %s.\n",name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__);
return status;
}
if ((status = VSsetclass(vdata_id, "HDF5")) != SUCCEED ) {
fprintf(stderr, "Error: Unable to set class on vdata %s\n", name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__);
return status;
}
if ((status = VSfdefine(vdata_id, fieldname, h4_type, lenstr)) != SUCCEED ) {
fprintf(stderr, "Error: Unable to VSfdefine() field\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__);
return status;
}
if ((status = VSsetfields(vdata_id, fieldname_list)) != SUCCEED ) {
fprintf(stderr, "Error: Unable to set fieldname list %s\n", fieldname_list);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__);
return status;
}
if ((status = VSsetinterlace(vdata_id, FULL_INTERLACE)) != SUCCEED ) {
fprintf(stderr, "Error: Unable to set FULL_INTERLACE mode, status %d\n", (int)status);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__);
return status;
}
if ((recsize = H5Tget_size(mem_type)) <= 0 ) {
fprintf(stderr, "Error: Unable to get record size %d\n", (int)recsize);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__);
status = recsize;
return status;
}
/*
Since the space is rank 1, n_records does not depend on maxdims.
*/
n_records = n_values;
if ((buffer = HDmalloc(n_records*recsize)) == NULL) {
fprintf(stderr, "Error: Problems with HDmalloc of memory space\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__);
status = FAIL;
return status;
}
if ((status = H5Dread(did, mem_type, space, space, H5P_DEFAULT, buffer)) != SUCCEED) {
fprintf(stderr, "Error: Problems with H5Dread\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__);
return status;
}
if ((record_pos = VSseek(vdata_id, 0)) != 0 ) {
fprintf(stderr, "Error: Could not seek the beginning of the Vdata, %d\n", (int)record_pos);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__);
status = record_pos;
return status;
}
if ((num_of_recs = VSwrite(vdata_id, (void *)buffer, n_records, FULL_INTERLACE)) != n_records ) {
fprintf(stderr, "Error: Only able to write %d of %d records\n", (int)num_of_recs, (int)n_records);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__);
status = num_of_recs;
return status;
}
/* there are only vdata attributes, no field attributes */
if ((status = H5Aiterate(did, NULL, (H5A_operator_t)convert_attr, op_data)) < 0 ) {
fprintf(stderr,"Error: iterate over attributes\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__);
return status;
}
if ((status = VSdetach(vdata_id)) != SUCCEED ) {
fprintf(stderr, "Error: Unable to detach to vdata %s.\n",name);
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "convert_dataset_string", __FILE__, __LINE__);
return status;
}
if (buffer != NULL) {
HDfree(buffer);
}
return status;
}
/*-------------------------------------------------------------------------
* Function: h5atomic_type_to_h4type
*
* Purpose: Match an H5 atomic type to an appropriate H4 type.
* Assign an appropirate H5 memory type that matches the H4 type.
* Return the H5 memory type, H4 type and sizeof H4 via pointers.
*
* Return: SUCCEED on suceed, FAIL on failure.
* When fail, pointer values of h5memtype, h5memsize and h4_type
* may have changed and are undefined.
*
* Programmer: Albert Cheng, March 2000
*
* Modifications:
*
*-----------------------------------------------------------------------*/
herr_t h5atomic_type_to_h4type(const hid_t h5type, hid_t* h5memtype, size_t* h5memsize, int32* h4type)
{
H5T_class_t class;
size_t h5typesize, h4typesize;
H5T_sign_t sign;
hid_t mem_datatype = FAIL;
if ((class = H5Tget_class(h5type)) < 0 ) {
fprintf(stderr,"Error: problem with getting type class\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5atomic_type_to_h4type", __FILE__, __LINE__);
return FAIL;
}
switch(class){
case H5T_INTEGER:
if ((h5typesize = H5Tget_size(h5type)) == 0 ) {
fprintf(stderr,"Error: problem with getting type size\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5atomic_type_to_h4type", __FILE__, __LINE__);
return FAIL;
}
if ((sign = H5Tget_sign(h5type)) == H5T_SGN_ERROR) {
fprintf(stderr,"Error: problem with getting type sign\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5atomic_type_to_h4type", __FILE__, __LINE__);
return FAIL;
}
/* deduce the proper HDF4 integer type to use according to the size of the HDF5 type. */
/* Current HDF4 types can be 8, 16, 32 bits (1, 2, 4 bytes). */
switch(h5typesize){
case 1:
*h4type = (sign == H5T_SGN_2 ? DFNT_INT8 : DFNT_UINT8);
h4typesize = sizeof(int8);
if (h4typesize == H5Tget_size(H5T_NATIVE_CHAR)){
mem_datatype = (sign == H5T_SGN_2 ? H5T_NATIVE_SCHAR : H5T_NATIVE_UCHAR);
}else if (h4typesize == H5Tget_size(H5T_NATIVE_SHORT)){
mem_datatype = (sign == H5T_SGN_2 ? H5T_NATIVE_SHORT : H5T_NATIVE_USHORT);
}else if (h4typesize == H5Tget_size(H5T_NATIVE_INT)){
mem_datatype = (sign == H5T_SGN_2 ? H5T_NATIVE_INT : H5T_NATIVE_UINT);
}else if (h4typesize == H5Tget_size(H5T_NATIVE_LONG)){
mem_datatype = (sign == H5T_SGN_2 ? H5T_NATIVE_LONG : H5T_NATIVE_ULONG);
}else
return(FAIL);
break;
case 2:
*h4type = (sign == H5T_SGN_2 ? DFNT_INT16 : DFNT_UINT16);
h4typesize = sizeof(int16);
if (h4typesize == H5Tget_size(H5T_NATIVE_CHAR)){
mem_datatype = (sign == H5T_SGN_2 ? H5T_NATIVE_SCHAR : H5T_NATIVE_UCHAR);
}else if (h4typesize == H5Tget_size(H5T_NATIVE_SHORT)){
mem_datatype = (sign == H5T_SGN_2 ? H5T_NATIVE_SHORT : H5T_NATIVE_USHORT);
}else if (h4typesize == H5Tget_size(H5T_NATIVE_INT)){
mem_datatype = (sign == H5T_SGN_2 ? H5T_NATIVE_INT : H5T_NATIVE_UINT);
}else if (h4typesize == H5Tget_size(H5T_NATIVE_LONG)){
mem_datatype = (sign == H5T_SGN_2 ? H5T_NATIVE_LONG : H5T_NATIVE_ULONG);
}else
return(FAIL);
break;
case 4:
*h4type = (sign == H5T_SGN_2 ? DFNT_INT32 : DFNT_UINT32);
h4typesize = sizeof(int32);
if (h4typesize == H5Tget_size(H5T_NATIVE_CHAR)){
mem_datatype = (sign == H5T_SGN_2 ? H5T_NATIVE_SCHAR : H5T_NATIVE_UCHAR);
}else if (h4typesize == H5Tget_size(H5T_NATIVE_SHORT)){
mem_datatype = (sign == H5T_SGN_2 ? H5T_NATIVE_SHORT : H5T_NATIVE_USHORT);
}else if (h4typesize == H5Tget_size(H5T_NATIVE_INT)){
mem_datatype = (sign == H5T_SGN_2 ? H5T_NATIVE_INT : H5T_NATIVE_UINT);
}else if (h4typesize == H5Tget_size(H5T_NATIVE_LONG)){
mem_datatype = (sign == H5T_SGN_2 ? H5T_NATIVE_LONG : H5T_NATIVE_ULONG);
}else
return(FAIL);
break;
default:
fprintf(stderr,"Error: unmatchable integer type\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5atomic_type_to_h4type", __FILE__, __LINE__);
return FAIL;
}
break;
/* end of case H5T_INTEGER */
case H5T_FLOAT:
if ((h5typesize = H5Tget_size(h5type)) == 0 ) {
fprintf(stderr,"Error: problem with getting type size\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5atomic_type_to_h4type", __FILE__, __LINE__);
return FAIL;
}
/* deduce the proper HDF4 floating point type to use according to the size of the HDF5 type. */
/* Current HDF4 types can be 32 or 64 bits (4 or 8 bytes). */
switch(h5typesize){
case 4:
*h4type = DFNT_FLOAT32;
h4typesize = sizeof(float32);
if (h4typesize == H5Tget_size(H5T_NATIVE_FLOAT)){
mem_datatype = H5T_NATIVE_FLOAT;
}else if (h4typesize == H5Tget_size(H5T_NATIVE_DOUBLE)){
mem_datatype = H5T_NATIVE_DOUBLE;
}else
return(FAIL);
break;
case 8:
*h4type = DFNT_FLOAT64;
h4typesize = sizeof(float64);
if (h4typesize == H5Tget_size(H5T_NATIVE_FLOAT)){
mem_datatype = H5T_NATIVE_FLOAT;
}else if (h4typesize == H5Tget_size(H5T_NATIVE_DOUBLE)){
mem_datatype = H5T_NATIVE_DOUBLE;
}else
return(FAIL);
break;
default:
fprintf(stderr,"Error: unmatchable H5 float type\n");
DEBUG_PRINT("Error detected in %s() [%s line %d]\n", "h5atomic_type_to_h4type", __FILE__, __LINE__);
return FAIL;
}
break;
/* end of case H5T_FLOAT */
default:
return FAIL;
}
*h5memsize = h4typesize;
*h5memtype = mem_datatype;
return(SUCCEED);
}
#ifndef NEWWAY
/*****************************************************************************
Routine: h5type_to_h4type(h5type)
Description: Translate h5 datatype into h4 datatype
Input: h5 datatype
Output: function return, h4 datatype
*****************************************************************************/
int32 h5type_to_h4type(hid_t h5_datatype)
{
int32 h4_datatype;
if (H5Tequal(h5_datatype,H5T_STD_I8BE)) {
h4_datatype = DFNT_INT8;
} else if (H5Tequal(h5_datatype,H5T_STD_I16BE)) {
h4_datatype = DFNT_INT16;
} else if (H5Tequal(h5_datatype,H5T_STD_I32BE)) {
h4_datatype = DFNT_INT32;
/*
* This is not supported by HDF4
*
} else if (H5Tequal(h5_datatype,H5T_STD_I64BE)) {
h4_datatype = DFNT_INT64;
*/
} else if (H5Tequal(h5_datatype,H5T_STD_U8BE)) {
h4_datatype = DFNT_UINT8;
} else if (H5Tequal(h5_datatype,H5T_STD_U16BE)) {
h4_datatype = DFNT_UINT16;
} else if (H5Tequal(h5_datatype,H5T_STD_U32BE)) {
h4_datatype = DFNT_UINT32;
} else if (H5Tequal(h5_datatype,H5T_STD_U64BE)) {
h4_datatype = DFNT_UINT64;
} else if (H5Tequal(h5_datatype,H5T_IEEE_F32BE)) {
h4_datatype = DFNT_FLOAT32;
} else if (H5Tequal(h5_datatype,H5T_IEEE_F64BE)) {
h4_datatype = DFNT_FLOAT64;
} else if (H5Tequal(h5_datatype,H5T_STD_I8LE)) {
h4_datatype = DFNT_INT8;
} else if (H5Tequal(h5_datatype,H5T_STD_I16LE)) {
h4_datatype = DFNT_INT16;
} else if (H5Tequal(h5_datatype,H5T_STD_I32LE)) {
h4_datatype = DFNT_INT32;
/*
* This is not supported by HDF4
*
} else if (H5Tequal(h5_datatype,H5T_STD_I64LE)) {
h4_datatype = DFNT_INT64;
*/
} else if (H5Tequal(h5_datatype,H5T_STD_U8LE)) {
h4_datatype = DFNT_UINT8;
} else if (H5Tequal(h5_datatype,H5T_STD_U16LE)) {
h4_datatype = DFNT_UINT16;
} else if (H5Tequal(h5_datatype,H5T_STD_U32LE)) {
h4_datatype = DFNT_UINT32;
} else if (H5Tequal(h5_datatype,H5T_STD_U64LE)) {
h4_datatype = DFNT_UINT64;
} else if (H5Tequal(h5_datatype,H5T_IEEE_F32LE)) {
h4_datatype = DFNT_FLOAT32;
} else if (H5Tequal(h5_datatype,H5T_IEEE_F64LE)) {
h4_datatype = DFNT_FLOAT64;
} else if (H5Tequal(h5_datatype,H5T_NATIVE_SCHAR)) {
h4_datatype = DFNT_INT8;
} else if (H5Tequal(h5_datatype,H5T_NATIVE_UCHAR)) {
h4_datatype = DFNT_UINT8;
} else if (H5Tequal(h5_datatype,H5T_NATIVE_SHORT)) {
h4_datatype = DFNT_INT16;
} else if (H5Tequal(h5_datatype,H5T_NATIVE_USHORT)) {
h4_datatype = DFNT_UINT16;
} else if (H5Tequal(h5_datatype,H5T_NATIVE_INT)) {
h4_datatype = DFNT_INT32;
} else if (H5Tequal(h5_datatype,H5T_NATIVE_UINT)) {
h4_datatype = DFNT_UINT32;
/*
* This is not supported by HDF4
*
} else if (H5Tequal(h5_datatype,H5T_NATIVE_LONG)) {
h4_datatype = DFNT_INT64;
*/
} else if (H5Tequal(h5_datatype,H5T_NATIVE_ULONG)) {
h4_datatype = DFNT_UINT64;
/*
* This is not supported by HDF4
*
} else if (H5Tequal(h5_datatype,H5T_NATIVE_LLONG)) {
h4_datatype = DFNT_INT128;
} else if (H5Tequal(h5_datatype,H5T_NATIVE_ULLONG)) {
h4_datatype = DFNT_UINT128;
*/
} else if (H5Tequal(h5_datatype,H5T_NATIVE_FLOAT)) {
h4_datatype = DFNT_FLOAT32;
} else if (H5Tequal(h5_datatype,H5T_NATIVE_DOUBLE)) {
h4_datatype = DFNT_FLOAT64;
/*
* This is not supported by HDF4
*
} else if (H5Tequal(h5_datatype,H5T_NATIVE_LDOUBLE)) {
h4_datatype = DFNT_FLOAT128;
*/
} else {
h4_datatype = FAIL;
}
return h4_datatype;
}
/*****************************************************************************
Routine: h4type_to_memtype(h4type)
Description: Translate h4 datatype into mem datatype
Input: h4 datatype
Output: function return, mem datatype
*****************************************************************************/
hid_t h4type_to_memtype(int32 h4_datatype)
{
hid_t mem_datatype;
switch (h4_datatype) {
case DFNT_INT8:
case DFNT_NINT8:
case DFNT_LINT8:
mem_datatype = H5T_NATIVE_SCHAR; break;
case DFNT_UINT8:
case DFNT_NUINT8:
case DFNT_LUINT8:
mem_datatype = H5T_NATIVE_UCHAR; break;
case DFNT_INT16:
case DFNT_NINT16:
case DFNT_LINT16:
mem_datatype = H5T_NATIVE_SHORT; break;
case DFNT_UINT16:
case DFNT_NUINT16:
case DFNT_LUINT16:
mem_datatype = H5T_NATIVE_USHORT; break;
case DFNT_INT32:
case DFNT_NINT32:
case DFNT_LINT32:
mem_datatype = H5T_NATIVE_INT; break;
case DFNT_UINT32:
case DFNT_NUINT32:
case DFNT_LUINT32:
mem_datatype = H5T_NATIVE_UINT; break;
case DFNT_INT64:
case DFNT_NINT64:
case DFNT_LINT64:
mem_datatype = H5T_NATIVE_LONG; break;
case DFNT_UINT64:
case DFNT_NUINT64:
case DFNT_LUINT64:
mem_datatype = H5T_NATIVE_ULONG; break;
case DFNT_INT128:
case DFNT_NINT128:
case DFNT_LINT128:
mem_datatype = H5T_NATIVE_LLONG; break;
case DFNT_UINT128:
case DFNT_NUINT128:
case DFNT_LUINT128:
mem_datatype = H5T_NATIVE_ULLONG; break;
case DFNT_FLOAT32:
case DFNT_NFLOAT32:
case DFNT_LFLOAT32:
mem_datatype = H5T_NATIVE_FLOAT; break;
case DFNT_FLOAT64:
case DFNT_NFLOAT64:
case DFNT_LFLOAT64:
mem_datatype = H5T_NATIVE_DOUBLE; break;
case DFNT_FLOAT128:
case DFNT_NFLOAT128:
case DFNT_LFLOAT128:
mem_datatype = H5T_NATIVE_LDOUBLE; break;
default:
mem_datatype = FAIL;
}
return mem_datatype;
}
#endif
/*****************************************************************************
Routine: test_file
Description: Test a file for read/write - ability.
Input: filename - Unix filename
Output: function return, global variable - errno
*****************************************************************************/
int test_file(char *filename,int oflag,mode_t mode)
{
int fid;
errno = 0;
fid = open(filename, oflag, mode);
if (fid < 0) {
perror(filename);
}
close(fid);
return errno;
}
/*****************************************************************************
Routine: test_dir
Description: Test pathway to determine if it is a directory
Input: path - pathname given
Output: function return TRUE/FALSE
*****************************************************************************/
int test_dir(char *path)
{
struct stat buf;
struct stat *buf_ptr;
int idir;
buf_ptr = &buf;
idir = stat(path, buf_ptr);
if (idir < 0) {
if (errno == 2) {
return 0;
} else {
perror(path);
}
}
return S_ISDIR(buf_ptr->st_mode);
}
/*****************************************************************************
Routine: BuildFilename()
Description: Build a filename with new extension
Input: filename - present filename
ext - extension to root of filename
Output: (filename:r).ext
*****************************************************************************/
char *BuildFilename(char *filename, char *ext)
{
/* build outgoing filename */
char *filename_out;
char *lastper_ptr, *lastdir_ptr;
int root_len;
lastper_ptr = strrchr(filename,'.');
lastdir_ptr = strrchr(filename,'/');
if ( lastper_ptr <= lastdir_ptr ) { /* no extension */
root_len = strlen(filename);
} else { /* existing extension */
root_len = (int)(lastper_ptr - filename);
}
filename_out = (char *)HDmalloc(root_len + strlen(ext) + 2);
filename_out = strncpy(filename_out, filename, (size_t)root_len);
filename_out[root_len] = '\0';
filename_out = strcat(filename_out,".");
filename_out = strcat(filename_out,ext);
return filename_out;
}
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