mirror of
https://github.com/HDFGroup/hdf5.git
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6d28e06f30
Description: Adds capability to h5ls to traverse external links when the -r (recursive) option is given. Changes to the way absolute path names are patched in h5trav.c. Changes to the way recursive traversal starting from a non-root group is handled (which also fixes some preexisting issues). Tests added for these cases. Tested: kagiso, smirom, linew (h5committest)
976 lines
28 KiB
C
976 lines
28 KiB
C
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the files COPYING and Copyright.html. COPYING can be found at the root *
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* of the source code distribution tree; Copyright.html can be found at the *
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* root level of an installed copy of the electronic HDF5 document set and *
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* is linked from the top-level documents page. It can also be found at *
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* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
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* access to either file, you may request a copy from help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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#include "h5trav.h"
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#include "H5private.h"
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/*-------------------------------------------------------------------------
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* local typedefs
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*-------------------------------------------------------------------------
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*/
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typedef struct trav_addr_t {
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size_t nalloc;
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size_t nused;
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struct {
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haddr_t addr;
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char *path;
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} *objs;
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} trav_addr_t;
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typedef struct {
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h5trav_obj_func_t visit_obj; /* Callback for visiting objects */
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h5trav_lnk_func_t visit_lnk; /* Callback for visiting links */
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void *udata; /* User data to pass to callbacks */
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} trav_visitor_t;
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typedef struct {
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trav_addr_t *seen; /* List of addresses seen already */
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const trav_visitor_t *visitor; /* Information for visiting each link/object */
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hbool_t is_absolute; /* Whether the traversal has absolute paths */
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const char *base_grp_name; /* Name of the group that serves as the base
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* for iteration */
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} trav_ud_traverse_t;
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typedef struct {
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hid_t fid; /* File ID being traversed */
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} trav_print_udata_t;
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/*-------------------------------------------------------------------------
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* local functions
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*-------------------------------------------------------------------------
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*/
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static void trav_table_add(trav_table_t *table,
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const char *objname,
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const H5O_info_t *oinfo);
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static void trav_table_addlink(trav_table_t *table,
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haddr_t objno,
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const char *path);
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/*-------------------------------------------------------------------------
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* "h5trav info" public functions. used in h5diff
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*-------------------------------------------------------------------------
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*/
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/*-------------------------------------------------------------------------
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* Function: trav_addr_add
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*
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* Purpose: Add a hardlink address to visited data structure
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*
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* Return: void
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*
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* Programmer: Quincey Koziol, koziol@hdfgroup.org
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*
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* Date: September 1, 2007
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*
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*-------------------------------------------------------------------------
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*/
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static void
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trav_addr_add(trav_addr_t *visited, haddr_t addr, const char *path)
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{
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size_t idx; /* Index of address to use */
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/* Allocate space if necessary */
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if(visited->nused == visited->nalloc) {
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visited->nalloc = MAX(1, visited->nalloc * 2);;
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visited->objs = HDrealloc(visited->objs, visited->nalloc * sizeof(visited->objs[0]));
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} /* end if */
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/* Append it */
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idx = visited->nused++;
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visited->objs[idx].addr = addr;
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visited->objs[idx].path = HDstrdup(path);
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} /* end trav_addr_add() */
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/*-------------------------------------------------------------------------
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* Function: trav_addr_visited
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*
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* Purpose: Check if an address has already been visited
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*
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* Return: TRUE/FALSE
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*
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* Programmer: Quincey Koziol, koziol@hdfgroup.org
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*
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* Date: September 1, 2007
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*
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*-------------------------------------------------------------------------
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*/
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static const char *
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trav_addr_visited(trav_addr_t *visited, haddr_t addr)
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{
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size_t u; /* Local index variable */
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/* Look for address */
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for(u = 0; u < visited->nused; u++)
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/* Check for address already in array */
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if(visited->objs[u].addr == addr)
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return(visited->objs[u].path);
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/* Didn't find address */
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return(NULL);
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} /* end trav_addr_visited() */
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/*-------------------------------------------------------------------------
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* Function: traverse_cb
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*
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* Purpose: Iterator callback for traversing objects in file
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*
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* Programmer: Quincey Koziol, koziol@hdfgroup.org
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*
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* Date: September 1, 2007
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*
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*-------------------------------------------------------------------------
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*/
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static herr_t
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traverse_cb(hid_t loc_id, const char *path, const H5L_info_t *linfo,
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void *_udata)
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{
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trav_ud_traverse_t *udata = (trav_ud_traverse_t *)_udata; /* User data */
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char *new_name = NULL;
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const char *full_name;
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const char *already_visited = NULL; /* Whether the link/object was already visited */
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/* Create the full path name for the link */
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if(udata->is_absolute) {
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size_t base_len = HDstrlen(udata->base_grp_name);
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size_t add_slash = base_len ? ((udata->base_grp_name)[base_len-1] != '/') : 1;
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if(NULL == (new_name = HDmalloc(base_len + add_slash + HDstrlen(path) + 1)))
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return(H5_ITER_ERROR);
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HDstrcpy(new_name, udata->base_grp_name);
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if (add_slash)
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new_name[base_len] = '/';
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HDstrcpy(new_name + base_len + add_slash, path);
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full_name = new_name;
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} /* end if */
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else
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full_name = path;
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/* Perform the correct action for different types of links */
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if(linfo->type == H5L_TYPE_HARD) {
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H5O_info_t oinfo;
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/* Get information about the object */
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if(H5Oget_info_by_name(loc_id, path, &oinfo, H5P_DEFAULT) < 0) {
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if(new_name)
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HDfree(new_name);
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return(H5_ITER_ERROR);
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}
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/* If the object has multiple links, add it to the list of addresses
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* already visited, if it isn't there already
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*/
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if(oinfo.rc > 1)
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if(NULL == (already_visited = trav_addr_visited(udata->seen, oinfo.addr)))
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trav_addr_add(udata->seen, oinfo.addr, full_name);
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/* Make 'visit object' callback */
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if(udata->visitor->visit_obj)
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if((*udata->visitor->visit_obj)(full_name, &oinfo, already_visited, udata->visitor->udata) < 0) {
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if(new_name)
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HDfree(new_name);
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return(H5_ITER_ERROR);
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}
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} /* end if */
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else {
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/* Make 'visit link' callback */
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if(udata->visitor->visit_lnk)
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if((*udata->visitor->visit_lnk)(full_name, linfo, udata->visitor->udata) < 0) {
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if(new_name)
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HDfree(new_name);
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return(H5_ITER_ERROR);
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}
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} /* end else */
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if(new_name)
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HDfree(new_name);
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return(H5_ITER_CONT);
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} /* end traverse_cb() */
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/*-------------------------------------------------------------------------
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* Function: traverse
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*
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* Purpose: Iterate over all the objects/links in a file. Conforms to the
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* "visitor" pattern.
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*
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* Return: 0 on success, -1 on failure
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*
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* Programmer: Quincey Koziol, koziol@hdfgroup.org
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*
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* Date: September 1, 2007
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*
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*-------------------------------------------------------------------------
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*/
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static int
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traverse(hid_t file_id, const char *grp_name, hbool_t visit_start,
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hbool_t recurse, const trav_visitor_t *visitor)
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{
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H5O_info_t oinfo; /* Object info for starting group */
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/* Get info for starting object */
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if(H5Oget_info_by_name(file_id, grp_name, &oinfo, H5P_DEFAULT) < 0)
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return -1;
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/* Visit the starting object */
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if(visit_start && visitor->visit_obj)
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(*visitor->visit_obj)(grp_name, &oinfo, NULL, visitor->udata);
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/* Go visiting, if the object is a group */
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if(oinfo.type == H5O_TYPE_GROUP) {
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trav_addr_t seen; /* List of addresses seen */
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trav_ud_traverse_t udata; /* User data for iteration callback */
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/* Init addresses seen */
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seen.nused = seen.nalloc = 0;
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seen.objs = NULL;
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/* Check for multiple links to top group */
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if(oinfo.rc > 1)
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trav_addr_add(&seen, oinfo.addr, grp_name);
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/* Set up user data structure */
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udata.seen = &seen;
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udata.visitor = visitor;
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udata.is_absolute = (*grp_name == '/');
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udata.base_grp_name = grp_name;
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/* Check for iteration of links vs. visiting all links recursively */
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if(recurse) {
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/* Visit all links in group, recursively */
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if(H5Lvisit_by_name(file_id, grp_name, H5_INDEX_NAME, H5_ITER_INC, traverse_cb, &udata, H5P_DEFAULT) < 0)
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return -1;
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} /* end if */
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else {
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/* Iterate over links in group */
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if(H5Literate_by_name(file_id, grp_name, H5_INDEX_NAME, H5_ITER_INC, NULL, traverse_cb, &udata, H5P_DEFAULT) < 0)
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return -1;
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} /* end else */
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/* Free visited addresses table */
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if(seen.objs) {
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size_t u; /* Local index variable */
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/* Free paths to objects */
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for(u = 0; u < seen.nused; u++)
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HDfree(seen.objs[u].path);
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HDfree(seen.objs);
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} /* end if */
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} /* end if */
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return 0;
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}
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/*-------------------------------------------------------------------------
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* Function: trav_info_add
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*
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* Purpose: Add a link path & type to info struct
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*
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* Return: void
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*
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* Programmer: Quincey Koziol, koziol@hdfgroup.org
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*
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* Date: September 1, 2007
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*
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*-------------------------------------------------------------------------
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*/
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static void
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trav_info_add(trav_info_t *info, const char *path, h5trav_type_t obj_type)
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{
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size_t idx; /* Index of address to use */
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/* Allocate space if necessary */
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if(info->nused == info->nalloc) {
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info->nalloc = MAX(1, info->nalloc * 2);;
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info->paths = (trav_path_t *)HDrealloc(info->paths, info->nalloc * sizeof(trav_path_t));
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} /* end if */
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/* Append it */
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idx = info->nused++;
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info->paths[idx].path = HDstrdup(path);
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info->paths[idx].type = obj_type;
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} /* end trav_info_add() */
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/*-------------------------------------------------------------------------
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* Function: trav_info_visit_obj
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*
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* Purpose: Callback for visiting object, with 'info' structure
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*
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* Return: 0 on success, -1 on failure
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*
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* Programmer: Quincey Koziol, koziol@hdfgroup.org
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*
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* Date: September 1, 2007
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*
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*-------------------------------------------------------------------------
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*/
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static int
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trav_info_visit_obj(const char *path, const H5O_info_t *oinfo,
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const char UNUSED *already_visited, void *udata)
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{
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/* Add the object to the 'info' struct */
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/* (object types map directly to "traversal" types) */
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trav_info_add((trav_info_t *)udata, path, (h5trav_type_t)oinfo->type);
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return(0);
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} /* end trav_info_visit_obj() */
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/*-------------------------------------------------------------------------
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* Function: trav_info_visit_lnk
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*
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* Purpose: Callback for visiting link, with 'info' structure
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*
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* Return: 0 on success, -1 on failure
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*
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* Programmer: Quincey Koziol, koziol@hdfgroup.org
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*
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* Date: September 1, 2007
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*
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*-------------------------------------------------------------------------
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*/
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static int
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trav_info_visit_lnk(const char *path, const H5L_info_t *linfo, void *udata)
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{
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/* Add the link to the 'info' struct */
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trav_info_add((trav_info_t *)udata, path, ((linfo->type == H5L_TYPE_SOFT) ? H5TRAV_TYPE_LINK : H5TRAV_TYPE_UDLINK));
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return(0);
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} /* end trav_info_visit_lnk() */
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/*-------------------------------------------------------------------------
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* Function: h5trav_getinfo
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*
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* Purpose: get an array of "trav_info_t" , containing the name and type of
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* objects in the file
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*
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* Return: number of object names in file
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*
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* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
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*
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* Date: November 6, 2002
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*
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*-------------------------------------------------------------------------
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*/
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int
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h5trav_getinfo(hid_t file_id, trav_info_t *info)
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{
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trav_visitor_t info_visitor; /* Visitor structure for trav_info_t's */
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/* Init visitor structure */
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info_visitor.visit_obj = trav_info_visit_obj;
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info_visitor.visit_lnk = trav_info_visit_lnk;
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info_visitor.udata = info;
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/* Traverse all objects in the file, visiting each object & link */
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if(traverse(file_id, "/", TRUE, TRUE, &info_visitor) < 0)
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return -1;
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return 0;
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}
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/*-------------------------------------------------------------------------
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* Function: h5trav_getindex
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*
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* Purpose: get index of OBJ in list
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*
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* Return: index, -1 if not found
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*
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* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
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*
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* Date: May 9, 2003
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*
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*-------------------------------------------------------------------------
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*/
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ssize_t
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h5trav_getindex(const trav_info_t *info, const char *obj)
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{
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size_t u; /* Local index variable */
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/* Loop over all paths in 'info' struct, looking for object */
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for(u = 0; u < info->nused; u++) {
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/* Check for object name having full path (with leading '/') */
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if(HDstrcmp(obj, info->paths[u].path) == 0)
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return((ssize_t)u);
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/* Check for object name without leading '/' */
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if(HDstrcmp(obj, (info->paths[u].path + 1)) == 0)
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return((ssize_t)u);
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} /* end for */
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return((ssize_t)-1);
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} /* end h5trav_getindex() */
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/*-------------------------------------------------------------------------
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* Function: trav_info_init
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*
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* Purpose: Initialize the info
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*
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* Return: void
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*
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* Programmer: Quincey Koziol, koziol@hdfgroup.org
|
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*
|
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* Date: September 6, 2007
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*
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*-------------------------------------------------------------------------
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*/
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void
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trav_info_init(trav_info_t **_info)
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{
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trav_info_t *info = (trav_info_t *)HDmalloc(sizeof(trav_info_t));
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|
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/* Init info structure */
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info->nused = info->nalloc = 0;
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info->paths = NULL;
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*_info = info;
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} /* end trav_info_init() */
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/*-------------------------------------------------------------------------
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* Function: trav_info_free
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*
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* Purpose: free info memory
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*
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*-------------------------------------------------------------------------
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*/
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|
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void
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trav_info_free(trav_info_t *info)
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{
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size_t u; /* Local index variable */
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|
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if(info) {
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/* Free path names */
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for(u = 0; u < info->nused; u++)
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HDfree(info->paths[u].path);
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HDfree(info->paths);
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HDfree(info);
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} /* end if */
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} /* end trav_info_free() */
|
||
|
||
|
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/*-------------------------------------------------------------------------
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* "h5trav table" public functions. used in h5repack
|
||
*-------------------------------------------------------------------------
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||
*/
|
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|
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|
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/*-------------------------------------------------------------------------
|
||
* Function: trav_table_visit_obj
|
||
*
|
||
* Purpose: Callback for visiting object, with 'table' sructure
|
||
*
|
||
* Return: 0 on success, -1 on failure
|
||
*
|
||
* Programmer: Quincey Koziol, koziol@hdfgroup.org
|
||
*
|
||
* Date: September 1, 2007
|
||
*
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||
*-------------------------------------------------------------------------
|
||
*/
|
||
static int
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trav_table_visit_obj(const char *path, const H5O_info_t *oinfo,
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||
const char *already_visited, void *udata)
|
||
{
|
||
trav_table_t *table = (trav_table_t *)udata;
|
||
|
||
/* Check if we've already seen this object */
|
||
if(NULL == already_visited)
|
||
/* add object to table */
|
||
trav_table_add(table, path, oinfo);
|
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else
|
||
/* Add alias for object to table */
|
||
trav_table_addlink(table, oinfo->addr, path);
|
||
|
||
return(0);
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||
} /* end trav_table_visit_obj() */
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: trav_table_visit_lnk
|
||
*
|
||
* Purpose: Callback for visiting link, with 'table' sructure
|
||
*
|
||
* Return: 0 on success, -1 on failure
|
||
*
|
||
* Programmer: Quincey Koziol, koziol@hdfgroup.org
|
||
*
|
||
* Date: September 1, 2007
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
static int
|
||
trav_table_visit_lnk(const char *path, const H5L_info_t UNUSED *linfo, void *udata)
|
||
{
|
||
/* Add the link to the 'table' struct */
|
||
trav_table_add((trav_table_t *)udata, path, NULL);
|
||
|
||
return(0);
|
||
} /* end trav_table_visit_lnk() */
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: h5trav_gettable
|
||
*
|
||
* Purpose: get the trav_table_t struct
|
||
*
|
||
* Return: 0, -1 on error
|
||
*
|
||
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
|
||
*
|
||
* Date: December 17, 2003
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
|
||
int
|
||
h5trav_gettable(hid_t fid, trav_table_t *table)
|
||
{
|
||
trav_visitor_t table_visitor; /* Visitor structure for trav_table_t's */
|
||
|
||
/* Init visitor structure */
|
||
table_visitor.visit_obj = trav_table_visit_obj;
|
||
table_visitor.visit_lnk = trav_table_visit_lnk;
|
||
table_visitor.udata = table;
|
||
|
||
/* Traverse all objects in the file, visiting each object & link */
|
||
if(traverse(fid, "/", TRUE, TRUE, &table_visitor) < 0)
|
||
return -1;
|
||
return 0;
|
||
}
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: h5trav_getindext
|
||
*
|
||
* Purpose: get index of NAME in list
|
||
*
|
||
* Return: index, -1 if not found
|
||
*
|
||
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
|
||
*
|
||
* Date: December 18, 2003
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
|
||
int
|
||
h5trav_getindext(const char *name, const trav_table_t *table)
|
||
{
|
||
unsigned int i;
|
||
|
||
for(i = 0; i < table->nobjs; i++) {
|
||
/* Check for object name having full path (with leading '/') */
|
||
if(HDstrcmp(name, table->objs[i].name) == 0)
|
||
return(i);
|
||
|
||
/* Check for object name without leading '/' */
|
||
if(HDstrcmp(name, table->objs[i].name + 1) == 0)
|
||
return(i);
|
||
|
||
/* search also in the list of links */
|
||
if(table->objs[i].nlinks) {
|
||
unsigned int j;
|
||
|
||
for ( j=0; j<table->objs[i].nlinks; j++) {
|
||
/* Check for object name having full path (with leading '/') */
|
||
if(HDstrcmp(name, table->objs[i].links[j].new_name) == 0)
|
||
return(i);
|
||
|
||
/* Check for object name without leading '/' */
|
||
if(HDstrcmp(name, table->objs[i].links[j].new_name + 1) == 0)
|
||
return(i);
|
||
} /* end for */
|
||
} /* end if */
|
||
} /* end for */
|
||
|
||
return -1;
|
||
}
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: trav_table_add
|
||
*
|
||
* Purpose: Add OBJNO, NAME and TYPE of object to table
|
||
*
|
||
* Return: void
|
||
*
|
||
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
|
||
*
|
||
* Date: November 4, 2002
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
|
||
static void
|
||
trav_table_add(trav_table_t *table,
|
||
const char *path,
|
||
const H5O_info_t *oinfo)
|
||
{
|
||
size_t new;
|
||
|
||
if(table->nobjs == table->size) {
|
||
table->size = MAX(1, table->size * 2);
|
||
table->objs = (trav_obj_t*)HDrealloc(table->objs, table->size * sizeof(trav_obj_t));
|
||
} /* end if */
|
||
|
||
new = table->nobjs++;
|
||
table->objs[new].objno = oinfo ? oinfo->addr : HADDR_UNDEF;
|
||
table->objs[new].flags[0] = table->objs[new].flags[1] = 0;
|
||
table->objs[new].name = (char *)HDstrdup(path);
|
||
table->objs[new].type = oinfo ? (h5trav_type_t)oinfo->type : H5TRAV_TYPE_LINK;
|
||
table->objs[new].nlinks = 0;
|
||
table->objs[new].sizelinks = 0;
|
||
table->objs[new].links = NULL;
|
||
}
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: trav_table_addlink
|
||
*
|
||
* Purpose: Add a hardlink name to the object
|
||
*
|
||
* Return: void
|
||
*
|
||
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
|
||
*
|
||
* Date: December 17, 2003
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
|
||
static void
|
||
trav_table_addlink(trav_table_t *table, haddr_t objno, const char *path)
|
||
{
|
||
size_t i; /* Local index variable */
|
||
|
||
for(i = 0; i < table->nobjs; i++) {
|
||
if(table->objs[i].objno == objno) {
|
||
size_t n;
|
||
|
||
/* already inserted? */
|
||
if(HDstrcmp(table->objs[i].name, path) == 0)
|
||
return;
|
||
|
||
/* allocate space if necessary */
|
||
if(table->objs[i].nlinks == (unsigned)table->objs[i].sizelinks) {
|
||
table->objs[i].sizelinks = MAX(1, table->objs[i].sizelinks * 2);
|
||
table->objs[i].links = (trav_link_t*)HDrealloc(table->objs[i].links, table->objs[i].sizelinks * sizeof(trav_link_t));
|
||
} /* end if */
|
||
|
||
/* insert it */
|
||
n = table->objs[i].nlinks++;
|
||
table->objs[i].links[n].new_name = (char *)HDstrdup(path);
|
||
|
||
return;
|
||
} /* end for */
|
||
} /* end for */
|
||
|
||
HDassert(0 && "object not in table?!?");
|
||
}
|
||
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: trav_table_addflags
|
||
*
|
||
* Purpose: Add FLAGS, NAME and TYPE of object to table
|
||
*
|
||
* Return: void
|
||
*
|
||
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
|
||
*
|
||
* Date: November 4, 2002
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
|
||
void trav_table_addflags(unsigned *flags,
|
||
char *name,
|
||
h5trav_type_t type,
|
||
trav_table_t *table)
|
||
{
|
||
unsigned int new;
|
||
|
||
if(table->nobjs == table->size) {
|
||
table->size = MAX(1, table->size * 2);
|
||
table->objs = (trav_obj_t *)HDrealloc(table->objs, table->size * sizeof(trav_obj_t));
|
||
} /* end if */
|
||
|
||
new = table->nobjs++;
|
||
table->objs[new].objno = 0;
|
||
table->objs[new].flags[0] = flags[0];
|
||
table->objs[new].flags[1] = flags[1];
|
||
table->objs[new].name = (char *)HDstrdup(name);
|
||
table->objs[new].type = type;
|
||
table->objs[new].nlinks = 0;
|
||
table->objs[new].sizelinks = 0;
|
||
table->objs[new].links = NULL;
|
||
}
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: trav_table_init
|
||
*
|
||
* Purpose: Initialize the table
|
||
*
|
||
* Return: void
|
||
*
|
||
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
|
||
*
|
||
* Date: November 4, 2002
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
|
||
void trav_table_init(trav_table_t **tbl)
|
||
{
|
||
trav_table_t* table = (trav_table_t*) HDmalloc(sizeof(trav_table_t));
|
||
|
||
table->size = 0;
|
||
table->nobjs = 0;
|
||
table->objs = NULL;
|
||
|
||
*tbl = table;
|
||
}
|
||
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: trav_table_free
|
||
*
|
||
* Purpose: free table memory
|
||
*
|
||
* Return: void
|
||
*
|
||
* Programmer: Pedro Vicente, pvn@ncsa.uiuc.edu
|
||
*
|
||
* Date: November 4, 2002
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
|
||
void trav_table_free( trav_table_t *table )
|
||
{
|
||
if(table->objs) {
|
||
unsigned int i;
|
||
|
||
for(i = 0; i < table->nobjs; i++) {
|
||
HDfree(table->objs[i].name );
|
||
if(table->objs[i].nlinks) {
|
||
unsigned int j;
|
||
|
||
for(j = 0; j < table->objs[i].nlinks; j++)
|
||
HDfree(table->objs[i].links[j].new_name);
|
||
|
||
HDfree(table->objs[i].links);
|
||
} /* end if */
|
||
} /* end for */
|
||
HDfree(table->objs);
|
||
} /* end if */
|
||
HDfree(table);
|
||
}
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: trav_print_visit_obj
|
||
*
|
||
* Purpose: Callback for visiting object, when printing info
|
||
*
|
||
* Return: 0 on success, -1 on failure
|
||
*
|
||
* Programmer: Quincey Koziol, koziol@hdfgroup.org
|
||
*
|
||
* Date: September 6, 2007
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
static int
|
||
trav_print_visit_obj(const char *path, const H5O_info_t *oinfo,
|
||
const char *already_visited, void UNUSED *udata)
|
||
{
|
||
/* Print the name of the object */
|
||
/* (no new-line, so that objects that we've encountered before can print
|
||
* the name of the original object)
|
||
*/
|
||
switch(oinfo->type) {
|
||
case H5O_TYPE_GROUP:
|
||
printf(" %-10s %s", "group", path);
|
||
break;
|
||
|
||
case H5O_TYPE_DATASET:
|
||
printf(" %-10s %s", "dataset", path);
|
||
break;
|
||
|
||
case H5O_TYPE_NAMED_DATATYPE:
|
||
printf(" %-10s %s", "datatype", path);
|
||
break;
|
||
|
||
default:
|
||
printf(" %-10s %s", "unknown object type", path);
|
||
break;
|
||
} /* end switch */
|
||
|
||
/* Check if we've already seen this object */
|
||
if(NULL == already_visited)
|
||
/* Finish printing line about object */
|
||
printf("\n");
|
||
else
|
||
/* Print the link's original name */
|
||
printf(" -> %s\n", already_visited);
|
||
|
||
return(0);
|
||
} /* end trav_print_visit_obj() */
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: trav_print_visit_lnk
|
||
*
|
||
* Purpose: Callback for visiting link, when printing info
|
||
*
|
||
* Return: 0 on success, -1 on failure
|
||
*
|
||
* Programmer: Quincey Koziol, koziol@hdfgroup.org
|
||
*
|
||
* Date: September 6, 2007
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
static int
|
||
trav_print_visit_lnk(const char *path, const H5L_info_t *linfo, void *udata)
|
||
{
|
||
trav_print_udata_t *print_udata = (trav_print_udata_t *)udata;
|
||
|
||
/* Print appropriate information for the type of link */
|
||
switch(linfo->type) {
|
||
case H5L_TYPE_SOFT:
|
||
if(linfo->u.val_size > 0) {
|
||
char *targbuf = HDmalloc(linfo->u.val_size + 1);
|
||
HDassert(targbuf);
|
||
|
||
H5Lget_val(print_udata->fid, path, targbuf, linfo->u.val_size + 1, H5P_DEFAULT);
|
||
printf(" %-10s %s -> %s\n", "link", path, targbuf);
|
||
free(targbuf);
|
||
} /* end if */
|
||
else
|
||
printf(" %-10s %s ->\n", "link", path);
|
||
break;
|
||
|
||
case H5L_TYPE_EXTERNAL:
|
||
if(linfo->u.val_size > 0) {
|
||
char *targbuf;
|
||
const char *filename;
|
||
const char *objname;
|
||
|
||
targbuf = HDmalloc(linfo->u.val_size + 1);
|
||
assert(targbuf);
|
||
|
||
H5Lget_val(print_udata->fid, path, targbuf, linfo->u.val_size + 1, H5P_DEFAULT);
|
||
H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL, &filename, &objname);
|
||
printf(" %-10s %s -> %s %s\n", "ext link", path, filename, objname);
|
||
free(targbuf);
|
||
} /* end if */
|
||
else
|
||
printf(" %-10s %s ->\n", "ext link", path);
|
||
break;
|
||
|
||
default:
|
||
printf(" %-10s %s -> ???\n", "unknown type of UD link", path);
|
||
break;
|
||
} /* end switch() */
|
||
|
||
return(0);
|
||
} /* end trav_print_visit_lnk() */
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: h5trav_print
|
||
*
|
||
* Purpose: Print information about the objects & links in the file
|
||
*
|
||
* Return: 0, -1 on error
|
||
*
|
||
* Programmer: Quincey Koziol, koziol@hdfgroup.org
|
||
*
|
||
* Date: September 6, 2007
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
|
||
int
|
||
h5trav_print(hid_t fid)
|
||
{
|
||
trav_print_udata_t print_udata; /* User data for traversal */
|
||
trav_visitor_t print_visitor; /* Visitor structure for printing objects */
|
||
|
||
/* Init user data for printing */
|
||
print_udata.fid = fid;
|
||
|
||
/* Init visitor structure */
|
||
print_visitor.visit_obj = trav_print_visit_obj;
|
||
print_visitor.visit_lnk = trav_print_visit_lnk;
|
||
print_visitor.udata = &print_udata;
|
||
|
||
/* Traverse all objects in the file, visiting each object & link */
|
||
if(traverse(fid, "/", TRUE, TRUE, &print_visitor) < 0)
|
||
return -1;
|
||
|
||
return 0;
|
||
}
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: h5trav_visit
|
||
*
|
||
* Purpose: Generic traversal routine for visiting objects and links
|
||
*
|
||
* Return: 0, -1 on error
|
||
*
|
||
* Programmer: Quincey Koziol, koziol@hdfgroup.org
|
||
*
|
||
* Date: November 6, 2007
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
|
||
int
|
||
h5trav_visit(hid_t fid, const char *grp_name, hbool_t visit_start,
|
||
hbool_t recurse, h5trav_obj_func_t visit_obj, h5trav_lnk_func_t visit_lnk,
|
||
void *udata)
|
||
{
|
||
trav_visitor_t visitor; /* Visitor structure for objects */
|
||
|
||
/* Init visitor structure */
|
||
visitor.visit_obj = visit_obj;
|
||
visitor.visit_lnk = visit_lnk;
|
||
visitor.udata = udata;
|
||
|
||
/* Traverse all objects in the file, visiting each object & link */
|
||
if(traverse(fid, grp_name, visit_start, recurse, &visitor) < 0)
|
||
return -1;
|
||
|
||
return 0;
|
||
}
|
||
|