hdf5/examples/h5_vds-eiger.c

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
 * Copyright by The HDF Group.                                               *
 * All rights reserved.                                                      *
 *                                                                           *
 * This file is part of HDF5.  The full HDF5 copyright notice, including     *
 * terms governing use, modification, and redistribution, is contained in    *
 * the COPYING file, which can be found at the root of the source code       *
 * distribution tree, or in https://www.hdfgroup.org/licenses.               *
 * If you do not have access to either file, you may request a copy from     *
 * help@hdfgroup.org.                                                        *
 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/************************************************************

  This example illustrates the concept of the virtual dataset.
  Eiger use case. Every 5 frames 10x10 are in the source
  dataset "/A" in file with the name f-<#>.h5
  This file is intended for use with HDF5 Library version 1.10

 ************************************************************/
/* EIP Add link to the picture */

#include "hdf5.h"
#include <stdio.h>
#include <stdlib.h>

#define FILE    "vds-eiger.h5"
#define DATASET "VDS-Eiger"
#define VDSDIM0 5
#define VDSDIM1 10
#define VDSDIM2 10
#define DIM0    5
#define DIM1    10
#define DIM2    10
#define RANK    3

int
main(void)
{
    hid_t   file, src_space, vspace, dset; /* Handles */
    hid_t   dcpl;
    herr_t  status;
    hsize_t vdsdims[3] = {VDSDIM0, VDSDIM1, VDSDIM2}, vdsdims_max[3] = {H5S_UNLIMITED, VDSDIM1, VDSDIM1},
            dims[3] = {DIM0, DIM1, DIM2}, start[3], /* Hyperslab parameters */
        stride[3], count[3], block[3];
    hsize_t start_out[3], /* Hyperslab parameter out */
        stride_out[3], count_out[3], block_out[3];
    int          i;
    H5D_layout_t layout;  /* Storage layout */
    size_t       num_map; /* Number of mappings */
    ssize_t      len;     /* Length of the string; also a return value */
    char        *filename;
    char        *dsetname;

    file = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);

    /* Create VDS dataspace.  */
    vspace = H5Screate_simple(RANK, vdsdims, vdsdims_max);

    /* Create dataspaces for the source dataset. */
    src_space = H5Screate_simple(RANK, dims, NULL);

    /* Create VDS creation property */
    dcpl = H5Pcreate(H5P_DATASET_CREATE);

    /* Initialize hyperslab values */

    start[0]  = 0;
    start[1]  = 0;
    start[2]  = 0;
    stride[0] = DIM0;
    stride[1] = 1;
    stride[2] = 1;
    count[0]  = H5S_UNLIMITED;
    count[1]  = 1;
    count[2]  = 1;
    block[0]  = DIM0;
    block[1]  = DIM1;
    block[2]  = DIM2;

    /*
     * Build the mappings
     *
     */
    status = H5Sselect_hyperslab(vspace, H5S_SELECT_SET, start, stride, count, block);
    status = H5Pset_virtual(dcpl, vspace, "f-%b.h5", "/A", src_space);

    /* Create a virtual dataset */
    dset   = H5Dcreate2(file, DATASET, H5T_NATIVE_INT, vspace, H5P_DEFAULT, dcpl, H5P_DEFAULT);
    status = H5Sclose(vspace);
    status = H5Sclose(src_space);
    status = H5Dclose(dset);
    status = H5Fclose(file);

    /*
     * Now we begin the read section of this example.
     */

    /*
     * Open file and dataset using the default properties.
     */
    file = H5Fopen(FILE, H5F_ACC_RDONLY, H5P_DEFAULT);
    dset = H5Dopen2(file, DATASET, H5P_DEFAULT);

    /*
     * Get creation property list and mapping properties.
     */
    dcpl = H5Dget_create_plist(dset);

    /*
     * Get storage layout.
     */
    layout = H5Pget_layout(dcpl);

    if (H5D_VIRTUAL == layout)
        printf(" Dataset has a virtual layout \n");
    else
        printf(" Wrong layout found \n");

    /*
     * Find number of mappings.
     */
    status = H5Pget_virtual_count(dcpl, &num_map);
    printf(" Number of mappings is %d\n", (int)num_map);

    /*
     * Get mapping parameters for each mapping.
     */
    for (i = 0; i < (int)num_map; i++) {
        printf(" Mapping %d \n", i);
        printf("         Selection in the virtual dataset \n");
        /* Get selection in the virtual dataset */
        vspace = H5Pget_virtual_vspace(dcpl, (size_t)i);
        if (H5Sget_select_type(vspace) == H5S_SEL_HYPERSLABS) {
            if (H5Sis_regular_hyperslab(vspace)) {
                status = H5Sget_regular_hyperslab(vspace, start_out, stride_out, count_out, block_out);
                printf("         start  = [%llu, %llu, %llu] \n", (unsigned long long)start_out[0],
                       (unsigned long long)start_out[1], (unsigned long long)start_out[2]);
                printf("         stride = [%llu, %llu, %llu] \n", (unsigned long long)stride_out[0],
                       (unsigned long long)stride_out[1], (unsigned long long)stride_out[2]);
                printf("         count  = [%llu, %llu, %llu] \n", (unsigned long long)count_out[0],
                       (unsigned long long)count_out[1], (unsigned long long)count_out[2]);
                printf("         block  = [%llu, %llu, %llu] \n", (unsigned long long)block_out[0],
                       (unsigned long long)block_out[1], (unsigned long long)block_out[2]);
            }
        }
        /* Get source file name */
        len      = H5Pget_virtual_filename(dcpl, (size_t)i, NULL, 0);
        filename = (char *)malloc((size_t)len * sizeof(char) + 1);
        H5Pget_virtual_filename(dcpl, (size_t)i, filename, len + 1);
        printf("         Source filename %s\n", filename);

        /* Get source dataset name */
        len      = H5Pget_virtual_dsetname(dcpl, (size_t)i, NULL, 0);
        dsetname = (char *)malloc((size_t)len * sizeof(char) + 1);
        H5Pget_virtual_dsetname(dcpl, (size_t)i, dsetname, len + 1);
        printf("         Source dataset name %s\n", dsetname);

        /* Get selection in the source dataset */
        printf("         Selection in the source dataset ");
        src_space = H5Pget_virtual_srcspace(dcpl, (size_t)i);
        if (H5Sget_select_type(src_space) == H5S_SEL_ALL) {
            printf("H5S_ALL \n");
        }
        /* EIP read data back */
        H5Sclose(vspace);
        H5Sclose(src_space);
        free(filename);
        free(dsetname);
    }

    /*
     * Close and release resources.
     */
    status = H5Pclose(dcpl);
    status = H5Dclose(dset);
    status = H5Fclose(file);

    return 0;
}