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hdf5/tools/h5tools.c
Patrick Lu ba25e1770b [svn-r1262] 
fixed another bug that i made when I started to merge the 2 libs together.
1999-05-17 10:36:33 -05:00

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/*
* Copyright © 1998 NCSA
* All rights reserved.
*
* Programmer: Robb Matzke <matzke@llnl.gov>
* Thursday, July 23, 1998
*
* Purpose: A library for displaying the values of a dataset in a human
* readable format.
*/
#include <assert.h>
#include <ctype.h>
#include <h5tools.h>
#include <hdf5.h>
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <H5private.h>
/*
taken from h5dumputil.c
*/
int indent = 0;
int compound_data=0;
/*
* If REPEAT_VERBOSE is defined then character strings will be printed so
* that repeated character sequences like "AAAAAAAAAA" are displayed as
*
* 'A' repeates 9 times
*
* Otherwise the format is more Perl-like
*
* 'A'*10
*
*/
#define REPEAT_VERBOSE
/*
* The output functions need a temporary buffer to hold a piece of the
* dataset while it's being printed. This constant sets the limit on the
* size of that temporary buffer in bytes. For efficiency's sake, choose the
* largest value suitable for your machine (for testing use a small value).
*/
#if 1
#define H5DUMP_BUFSIZE (1024*1024)
#else
#define H5DUMP_BUFSIZE (1024)
#endif
#define OPT(X,S) ((X)?(X):(S))
#define ALIGN(A,Z) ((((A)+(Z)-1)/(Z))*(Z))
#define START_OF_DATA 0x0001
#define END_OF_DATA 0x0002
/* Variable length string datatype */
#define STR_INIT_LEN 4096 /*initial length */
typedef struct h5dump_str_t {
char *s; /*allocate string */
size_t len; /*length of actual value */
size_t nalloc; /*allocated size of string */
} h5dump_str_t;
/* Special strings embedded in the output */
#define OPTIONAL_LINE_BREAK "\001"
/* Output variables */
typedef struct h5dump_context_t {
size_t cur_column; /*current column for output */
int need_prefix; /*is line prefix needed? */
int ndims; /*dimensionality */
hsize_t p_min_idx[H5S_MAX_RANK]; /*min selected index */
hsize_t p_max_idx[H5S_MAX_RANK]; /*max selected index */
int prev_multiline; /*was prev datum multiline? */
size_t prev_prefix_len;/*length of previous prefix */
} h5dump_context_t;
/*-------------------------------------------------------------------------
* Function: h5dump_str_close
*
* Purpose: Closes a string by releasing it's memory and setting the size
* information to zero.
*
* Return: void
*
* Programmer: Robb Matzke
* Monday, April 26, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static void
h5dump_str_close(h5dump_str_t *str)
{
if (str && str->nalloc) {
free(str->s);
memset(str, 0, sizeof(h5dump_str_t));
}
}
/*-------------------------------------------------------------------------
* Function: h5dump_str_len
*
* Purpose: Returns the length of the string, not counting the null
* terminator.
*
* Return: Success: Length of string
*
* Failure: 0
*
* Programmer: Robb Matzke
* Monday, April 26, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static size_t
h5dump_str_len(h5dump_str_t *str)
{
return str->len;
}
/*-------------------------------------------------------------------------
* Function: h5dump_str_append
*
* Purpose: Formats variable arguments according to printf() format
* string and appends the result to variable length string STR.
*
* Return: Success: Pointer to buffer containing result.
*
* Failure: NULL
*
* Programmer: Robb Matzke
* Monday, April 26, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static char *
h5dump_str_append(h5dump_str_t *str/*in,out*/, const char *fmt, ...)
{
va_list ap;
va_start(ap, fmt);
/* Make sure we have some memory into which to print */
if (!str->s || str->nalloc<=0) {
str->nalloc = STR_INIT_LEN;
str->s = malloc(str->nalloc);
assert(str->s);
str->s[0] = '\0';
str->len = 0;
}
while (1) {
size_t avail = str->nalloc - str->len;
size_t nchars = HDvsnprintf(str->s+str->len, avail, fmt, ap);
if (nchars<avail) {
/* success */
str->len += nchars;
break;
}
/* Try again with twice as much space */
str->nalloc *= 2;
str->s = realloc(str->s, str->nalloc);
assert(str->s);
}
va_end(ap);
return str->s;
}
/*-------------------------------------------------------------------------
* Function: h5dump_str_reset
*
* Purpose: Reset the string to the empty value. If no memory is
* allocated yet then initialize the h5dump_str_t struct.
*
* Return: Success: Ptr to the buffer which contains a null
* character as the first element.
*
* Failure: NULL
*
* Programmer: Robb Matzke
* Monday, April 26, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static char *
h5dump_str_reset(h5dump_str_t *str/*in,out*/)
{
if (!str->s || str->nalloc<=0) {
str->nalloc = STR_INIT_LEN;
str->s = malloc(str->nalloc);
assert(str->s);
}
str->s[0] = '\0';
str->len = 0;
return str->s;
}
/*-------------------------------------------------------------------------
* Function: h5dump_str_trunc
*
* Purpose: Truncate a string to be at most SIZE characters.
*
* Return: Success: Pointer to the string
*
* Failure: NULL
*
* Programmer: Robb Matzke
* Monday, April 26, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static char *
h5dump_str_trunc(h5dump_str_t *str/*in,out*/, size_t size)
{
if (size<str->len) {
str->len = size;
str->s[size] = '\0';
}
return str->s;
}
/*-------------------------------------------------------------------------
* Function: h5dump_str_fmt
*
* Purpose: Reformat a string contents beginning at character START
* according to printf format FMT. FMT should contain no format
* specifiers except possibly the `%s' variety. For example, if
* the input string is `hello' and the format is "<<%s>>" then
* the output value will be "<<hello>>".
*
* Return: Success: A pointer to the resulting string.
*
* Failure: NULL
*
* Programmer: Robb Matzke
* Monday, April 26, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static char *
h5dump_str_fmt(h5dump_str_t *str/*in,out*/, size_t start, const char *fmt)
{
char _temp[1024], *temp=_temp;
/* If the format string is simply "%s" then don't bother doing anything */
if (!strcmp(fmt, "%s")) return str->s;
/*
* Save the input value if there is a `%' anywhere in FMT. Otherwise
* don't bother because we don't need a temporary copy.
*/
if (strchr(fmt, '%')) {
if ((str->len-start)+1>sizeof _temp) {
temp = malloc((str->len-start)+1);
assert(temp);
}
strcpy(temp, str->s+start);
}
/* Reset the output string and append a formatted version */
h5dump_str_trunc(str, start);
h5dump_str_append(str, fmt, temp);
/* Free the temp buffer if we allocated one */
if (temp != _temp) free(temp);
return str->s;
}
/*-------------------------------------------------------------------------
* Function: h5dump_prefix
*
* Purpose: Renders the line prefix value into string STR.
*
* Return: Success: Pointer to the prefix.
*
* Failure: NULL
*
* Programmer: Robb Matzke
* Thursday, July 23, 1998
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static char *
h5dump_prefix(h5dump_str_t *str/*in,out*/, const h5dump_t *info,
hsize_t elmtno, int ndims, hsize_t min_idx[], hsize_t max_idx[])
{
hsize_t p_prod[H5S_MAX_RANK], p_idx[H5S_MAX_RANK];
hsize_t n, i=0;
h5dump_str_reset(str);
if (ndims>0) {
/*
* Calculate the number of elements represented by a unit change in a
* certain index position.
*/
for (i=ndims-1, p_prod[ndims-1]=1; i>0; --i) {
p_prod[i-1] = (max_idx[i]-min_idx[i]) * p_prod[i];
}
/*
* Calculate the index values from the element number.
*/
for (i=0, n=elmtno; i<(hsize_t)ndims; i++) {
p_idx[i] = n / p_prod[i] + min_idx[i];
n %= p_prod[i];
}
/*
* Print the index values.
*/
for (i=0; i<(hsize_t)ndims; i++) {
if (i) h5dump_str_append(str, "%s", OPT(info->idx_sep, ","));
h5dump_str_append(str, OPT(info->idx_n_fmt, "%lu"),
(unsigned long)p_idx[i]);
}
} else {
/* Scalar */
h5dump_str_append(str, OPT(info->idx_n_fmt, "%lu"), (unsigned long)0);
}
/*
* Add prefix and suffix to the index.
*/
return h5dump_str_fmt(str, 0, OPT(info->idx_fmt, "%s: "));
}
/*-------------------------------------------------------------------------
* Function: h5dump_escape
*
* Purpose: Changes all "funny" characters in S into standard C escape
* sequences. If ESCAPE_SPACES is non-zero then spaces are
* escaped by prepending a backslash.
*
* Return: Success: S
*
* Failure: NULL if the buffer would overflow. The
* buffer has as many left-to-right escapes as
* possible before overflow would have happened.
*
* Programmer: Robb Matzke
* Monday, April 26, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static char *
h5dump_escape(char *s/*in,out*/, size_t size, int escape_spaces)
{
size_t n = strlen(s);
size_t i;
const char *escape;
char octal[8];
for (i=0; i<n; i++) {
switch (s[i]) {
case '"':
escape = "\\\"";
break;
case '\\':
escape = "\\\\";
break;
case '\b':
escape = "\\b";
break;
case '\f':
escape = "\\f";
break;
case '\n':
escape = "\\n";
break;
case '\r':
escape = "\\r";
break;
case '\t':
escape = "\\t";
break;
case ' ':
escape = escape_spaces ? "\\ " : NULL;
break;
default:
if (!isprint(*s)) {
sprintf(octal, "\\%03o", (unsigned char)(s[i]));
escape = octal;
} else {
escape = NULL;
}
break;
}
if (escape) {
size_t esc_size = strlen(escape);
if (n+esc_size+1>size) return NULL; /*would overflow*/
memmove(s+i+esc_size, s+i, (n-i)+1); /*make room*/
memcpy(s+i, escape, esc_size); /*insert*/
n += esc_size;
i += esc_size - 1;
}
}
return s;
}
/*-------------------------------------------------------------------------
* Function: h5dump_sprint
*
* Purpose: Renders the value pointed to by VP of type TYPE into variable
* length string STR.
*
* Return: A pointer to memory containing the result or NULL on error.
*
* Programmer: Robb Matzke
* Thursday, July 23, 1998
*
* Modifications:
* Robb Matzke, 1999-04-26
* Made this function safe from overflow problems by allowing it
* to reallocate the output string.
*
*-------------------------------------------------------------------------
*/
static char *
h5dump_sprint(h5dump_str_t *str/*in,out*/, const h5dump_t *info,
hid_t type, void *vp)
{
size_t i, n, offset, size, dims[H5S_MAX_RANK], nelmts, start;
char *name, quote='\0';
hid_t memb;
int nmembs, j, k, ndims;
const int repeat_threshold = 8;
static char fmt_llong[8], fmt_ullong[8];
/* Build default formats for long long types */
if (!fmt_llong[0]) {
sprintf(fmt_llong, "%%%sd", PRINTF_LL_WIDTH);
sprintf(fmt_ullong, "%%%su", PRINTF_LL_WIDTH);
}
if (info) {
/* Append value depending on data type */
start = h5dump_str_len(str);
if (H5Tequal(type, H5T_NATIVE_DOUBLE)) {
h5dump_str_append(str, OPT(info->fmt_double, "%g"), *((double*)vp));
} else if (H5Tequal(type, H5T_NATIVE_FLOAT)) {
h5dump_str_append(str, OPT(info->fmt_double, "%g"), *((float*)vp));
} else if (info->ascii &&
(H5Tequal(type, H5T_NATIVE_SCHAR) ||
H5Tequal(type, H5T_NATIVE_UCHAR))) {
switch (*((char*)vp)) {
case '"':
h5dump_str_append(str, "\\\"");
break;
case '\\':
h5dump_str_append(str, "\\\\");
break;
case '\b':
h5dump_str_append(str, "\\b");
break;
case '\f':
h5dump_str_append(str, "\\f");
break;
case '\n':
h5dump_str_append(str, "\\n");
break;
case '\r':
h5dump_str_append(str, "\\r");
break;
case '\t':
h5dump_str_append(str, "\\t");
break;
default:
if (isprint(*((char*)vp))) {
h5dump_str_append(str, "%c", *((char*)vp));
} else {
h5dump_str_append(str, "\\%03o", *((unsigned char*)vp));
}
break;
}
} else if (H5T_STRING==H5Tget_class(type)) {
size = H5Tget_size(type);
quote = '\0';
for (i=0; i<size; i++) {
/* Count how many times the next character repeats */
j=1;
while (i+j<size && ((char*)vp)[i]==((char*)vp)[i+j]) j++;
/*
* Print the opening quote. If the repeat count is high enough
* to warrant printing the number of repeats instead of
* enumerating the characters, then make sure the character to be
* repeated is in it's own quote.
*/
if (j>repeat_threshold) {
if (quote) h5dump_str_append(str, "%c", quote);
quote = '\'';
h5dump_str_append(str, "%s%c", i?" ":"", quote);
} else if (!quote) {
quote = '"';
h5dump_str_append(str, "%s%c", i?" ":"", quote);
}
/* Print the character */
switch (((char*)vp)[i]) {
case '"':
h5dump_str_append(str, "\\\"");
break;
case '\\':
h5dump_str_append(str, "\\\\");
break;
case '\b':
h5dump_str_append(str, "\\b");
break;
case '\f':
h5dump_str_append(str, "\\f");
break;
case '\n':
h5dump_str_append(str, "\\n");
break;
case '\r':
h5dump_str_append(str, "\\r");
break;
case '\t':
h5dump_str_append(str, "\\t");
break;
default:
if (isprint(((char*)vp)[i])) {
h5dump_str_append(str, "%c", ((char*)vp)[i]);
} else {
h5dump_str_append(str, "\\%03o", ((unsigned char*)vp)[i]);
}
break;
}
/* Print the repeat count */
if (j>repeat_threshold) {
#ifdef REPEAT_VERBOSE
h5dump_str_append(str, "%c repeats %d times", quote, j-1);
#else
h5dump_str_append(str, "%c*%d", quote, j-1);
#endif
quote = '\0';
i += j-1;
}
}
if (quote) h5dump_str_append(str, "%c", quote);
} else if (H5Tequal(type, H5T_NATIVE_INT)) {
h5dump_str_append(str, OPT(info->fmt_int, "%d"),
*((int*)vp));
} else if (H5Tequal(type, H5T_NATIVE_UINT)) {
h5dump_str_append(str, OPT(info->fmt_uint, "%u"),
*((unsigned*)vp));
} else if (H5Tequal(type, H5T_NATIVE_SCHAR)) {
h5dump_str_append(str, OPT(info->fmt_schar, "%d"),
*((signed char*)vp));
} else if (H5Tequal(type, H5T_NATIVE_UCHAR)) {
h5dump_str_append(str, OPT(info->fmt_uchar, "%u"),
*((unsigned char*)vp));
} else if (H5Tequal(type, H5T_NATIVE_SHORT)) {
h5dump_str_append(str, OPT(info->fmt_short, "%d"),
*((short*)vp));
} else if (H5Tequal(type, H5T_NATIVE_USHORT)) {
h5dump_str_append(str, OPT(info->fmt_ushort, "%u"),
*((unsigned short*)vp));
} else if (H5Tequal(type, H5T_NATIVE_LONG)) {
h5dump_str_append(str, OPT(info->fmt_long, "%ld"),
*((long*)vp));
} else if (H5Tequal(type, H5T_NATIVE_ULONG)) {
h5dump_str_append(str, OPT(info->fmt_ulong, "%lu"),
*((unsigned long*)vp));
} else if (H5Tequal(type, H5T_NATIVE_LLONG)) {
h5dump_str_append(str, OPT(info->fmt_llong, fmt_llong),
*((long_long*)vp));
} else if (H5Tequal(type, H5T_NATIVE_ULLONG)) {
h5dump_str_append(str, OPT(info->fmt_ullong, fmt_ullong),
*((unsigned long_long*)vp));
} else if (H5Tequal(type, H5T_NATIVE_HSSIZE)) {
if (sizeof(hssize_t)==sizeof(int)) {
h5dump_str_append(str, OPT(info->fmt_int, "%d"),
*((int*)vp));
} else if (sizeof(hssize_t)==sizeof(long)) {
h5dump_str_append(str, OPT(info->fmt_long, "%ld"),
*((long*)vp));
} else {
h5dump_str_append(str, OPT(info->fmt_llong, fmt_llong),
*((int64_t*)vp));
}
} else if (H5Tequal(type, H5T_NATIVE_HSIZE)) {
if (sizeof(hsize_t)==sizeof(int)) {
h5dump_str_append(str, OPT(info->fmt_uint, "%u"),
*((unsigned*)vp));
} else if (sizeof(hsize_t)==sizeof(long)) {
h5dump_str_append(str, OPT(info->fmt_ulong, "%lu"),
*((unsigned long*)vp));
} else {
h5dump_str_append(str, OPT(info->fmt_ullong, fmt_ullong),
*((uint64_t*)vp));
}
} else if (H5T_COMPOUND==H5Tget_class(type)) {
nmembs = H5Tget_nmembers(type);
h5dump_str_append(str, "%s", OPT(info->cmpd_pre, "{"));
for (j=0; j<nmembs; j++) {
if (j) h5dump_str_append(str, "%s",
OPT(info->cmpd_sep,
", " OPTIONAL_LINE_BREAK));
/* The name */
name = H5Tget_member_name(type, j);
h5dump_str_append(str, OPT(info->cmpd_name, ""), name);
free(name);
/* The value */
offset = H5Tget_member_offset(type, j);
memb = H5Tget_member_type(type, j);
size = H5Tget_size(memb);
ndims = H5Tget_member_dims(type, j, dims, NULL);
assert(ndims>=0 && ndims<=H5S_MAX_RANK);
for (k=0, nelmts=1; k<ndims; k++) nelmts *= dims[k];
if (nelmts>1) {
h5dump_str_append(str, "%s", OPT(info->arr_pre, "["));
}
for (i=0; i<nelmts; i++) {
if (i) {
h5dump_str_append(str, "%s",
OPT(info->arr_sep,
"," OPTIONAL_LINE_BREAK));
}
h5dump_sprint(str, info, memb, (char*)vp+offset+i*size);
}
if (nelmts>1) {
h5dump_str_append(str, "%s", OPT(info->arr_suf, "]"));
}
H5Tclose(memb);
}
h5dump_str_append(str, "%s", OPT(info->cmpd_suf, "}"));
} else if (H5T_ENUM==H5Tget_class(type)) {
char enum_name[1024];
if (H5Tenum_nameof(type, vp, enum_name, sizeof enum_name)>=0) {
h5dump_escape(enum_name, sizeof enum_name, TRUE);
} else {
h5dump_str_append(str, "0x");
n = H5Tget_size(type);
for (i=0; i<n; i++) {
h5dump_str_append(str, "%02x", ((unsigned char*)vp)[i]);
}
}
} else {
h5dump_str_append(str, "0x");
n = H5Tget_size(type);
for (i=0; i<n; i++) {
h5dump_str_append(str, "%02x", ((unsigned char*)vp)[i]);
}
}
return h5dump_str_fmt(str, start, OPT(info->elmt_fmt, "%s"));
}
else {
/*
this is just my first step in copmbining these 2 functions
this is ripped straight out of h5dumputil.c
*/
char temp[1024];
H5T_str_t str_pad;
// char *s = str->s;
if (H5Tequal(type, H5T_NATIVE_DOUBLE)) {
sprintf(str->s, "%g", *((double*)vp));
} else if (H5Tequal(type, H5T_NATIVE_FLOAT)) {
sprintf(str->s, "%g", *((float*)vp));
} else if (H5Tequal(type, H5T_NATIVE_SHORT)) {
sprintf(str->s, "%d", *((short*)vp));
} else if (H5Tequal(type, H5T_NATIVE_USHORT)) {
sprintf(str->s, "%u", *((unsigned short*)vp));
} else if (H5Tequal(type, H5T_NATIVE_INT)) {
sprintf(str->s, "%d", *((int*)vp));
} else if (H5Tequal(type, H5T_NATIVE_UINT)) {
sprintf(str->s, "%u", *((unsigned*)vp));
} else if (H5Tequal(type, H5T_NATIVE_LONG)) {
sprintf(str->s, "%ld", *((long*)vp));
} else if (H5Tequal(type, H5T_NATIVE_ULONG)) {
sprintf(str->s, "%lu", *((unsigned long*)vp));
} else if (H5Tequal(type, H5T_NATIVE_SCHAR)) {
sprintf(str->s, "%d", *((signed char*)vp));
} else if (H5Tequal(type, H5T_NATIVE_UCHAR)) {
sprintf(str->s, "%u", *((unsigned char*)vp));
} else if (H5T_STRING==H5Tget_class(type)) {
str_pad = H5Tget_strpad(type) ;
j = 0;
for (i = 0; i < H5Tget_size(type); i++) {
switch (*((char*)vp+i)) {
case '"':
strcpy(str->s+j, "\\\"");
j += strlen("\\\"");
break;
case '\\':
strcpy(str->s+j, "\\\\");
j += strlen("\\\\");
break;
case '\b':
strcpy(str->s+j, "\\b");
j += strlen("\\b");
break;
case '\f':
strcpy(str->s+j, "\\f");
j += strlen("\\f");
break;
case '\n':
strcpy(str->s+j, "\\n");
j += strlen("\\n");
break;
case '\r':
strcpy(str->s+j, "\\r");
j += strlen("\\r");
break;
case '\t':
strcpy(str->s+j, "\\t");
j += strlen("\\t");
break;
default:
if (isprint(*((char*)vp+i))){
sprintf(str->s+j, "%c", *((char*)vp+i));
j += strlen(str->s+j);
} else {
if (str_pad == H5T_STR_NULLTERM &&
*((unsigned char*)vp+i) == '\0' ) {
sprintf(str->s+j, "%c", *((unsigned char*)vp+i));
i = H5Tget_size(type);
} else {
sprintf(str->s+j, "\\%03o", *((unsigned char*)vp+i));
j += strlen(str->s+j);
}
}
break;
}
}
} else {
strcpy(temp, "0x");
n = H5Tget_size(type);
for (i=0; i<n; i++) {
sprintf(temp+strlen(temp), "%02x", ((unsigned char*)vp)[i]);
}
sprintf(str->s, "%s", temp);
}
}
}
/*-------------------------------------------------------------------------
* Function: h5dump_ncols
*
* Purpose: Count the number of columns in a string. This is the number
* of characters in the string not counting line-control
* characters.
*
* Return: Success: Width of string.
*
* Failure: 0
*
* Programmer: Robb Matzke
* Tuesday, April 27, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static size_t
h5dump_ncols(const char *s)
{
size_t i;
for (i=0; *s; s++) if (*s>=' ') i++;
return i;
}
/*-------------------------------------------------------------------------
* Function: h5dump_simple_prefix
*
* Purpose: If ctx->need_prefix is set then terminate the current line
* (if applicable), calculate the prefix string, and display it
* at the start of a line.
*
* Return: void
*
* Programmer: Robb Matzke
* Monday, April 26, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static void
h5dump_simple_prefix(FILE *stream, const h5dump_t *info,
h5dump_context_t *ctx, hsize_t elmtno, int secnum)
{
h5dump_str_t prefix;
memset(&prefix, 0, sizeof(h5dump_str_t));
if (!ctx->need_prefix) return;
/* Terminate previous line, if any */
if (ctx->cur_column) {
fputs(OPT(info->line_suf, ""), stream);
putc('\n', stream);
fputs(OPT(info->line_sep, ""), stream);
}
/* Calculate new prefix */
h5dump_prefix(&prefix, info, elmtno, ctx->ndims,
ctx->p_min_idx, ctx->p_max_idx);
/* Write new prefix to output */
if (0==elmtno && 0==secnum && info->line_1st) {
fputs(h5dump_str_fmt(&prefix, 0, info->line_1st),
stream);
} else if (secnum && info->line_cont) {
fputs(h5dump_str_fmt(&prefix, 0, info->line_cont),
stream);
} else {
fputs(h5dump_str_fmt(&prefix, 0, info->line_pre),
stream);
}
ctx->cur_column = ctx->prev_prefix_len = h5dump_str_len(&prefix);
ctx->need_prefix = 0;
/* Free string */
h5dump_str_close(&prefix);
}
/*-------------------------------------------------------------------------
* Function: h5dump_simple_data
*
* Purpose: Prints some (NELMTS) data elements to output STREAM. The
* elements are stored in _MEM as type TYPE and are printed
* according to the format described in INFO. The CTX struct
* contains context information shared between calls to this
* function. The FLAGS is a bit field that indicates whether
* the data supplied in this call falls at the beginning or end
* of the total data to be printed (START_OF_DATA and
* END_OF_DATA).
*
* Return: void
*
* Programmer: Robb Matzke
* Monday, April 26, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static void
h5dump_simple_data(FILE *stream, const h5dump_t *info,
h5dump_context_t *ctx/*in,out*/, unsigned flags,
hsize_t nelmts, hid_t type, void *_mem)
{
unsigned char *mem = (unsigned char*)_mem;
hsize_t i; /*element counter */
char *s, *section; /*a section of output */
int secnum; /*section sequence number */
size_t size; /*size of each datum */
size_t ncols=80; /*available output width */
h5dump_str_t buffer; /*string into which to render */
int multiline; /*datum was multiline */
/* Setup */
memset(&buffer, 0, sizeof(h5dump_str_t));
size = H5Tget_size(type);
if (info->line_ncols>0) ncols = info->line_ncols;
h5dump_simple_prefix(stream, info, ctx, 0, 0);
for (i=0; i<nelmts; i++) {
/* Render the element */
h5dump_str_reset(&buffer);
h5dump_sprint(&buffer, info, type, mem+i*size);
if (i+1<nelmts || 0==(flags & END_OF_DATA)) {
h5dump_str_append(&buffer, "%s", OPT(info->elmt_suf1, ","));
}
s = h5dump_str_fmt(&buffer, 0, "%s");
/*
* If the element would split on multiple lines if printed at our
* current location...
*/
if (1==info->line_multi_new &&
(ctx->cur_column + h5dump_ncols(s) +
strlen(OPT(info->elmt_suf2, " ")) +
strlen(OPT(info->line_suf, ""))) > ncols) {
if (ctx->prev_multiline) {
/*
* ... and the previous element also occupied more than one
* line, then start this element at the beginning of a line.
*/
ctx->need_prefix = TRUE;
} else if ((ctx->prev_prefix_len + h5dump_ncols(s) +
strlen(OPT(info->elmt_suf2, " ")) +
strlen(OPT(info->line_suf, ""))) <= ncols) {
/*
* ...but *could* fit on one line otherwise, then we
* should end the current line and start this element on its
* own line.
*/
ctx->need_prefix = TRUE;
}
}
/*
* If the previous element occupied multiple lines and this element
* is too long to fit on a line then start this element at the
* beginning of the line.
*/
if (1==info->line_multi_new &&
ctx->prev_multiline &&
(ctx->cur_column + h5dump_ncols(s) +
strlen(OPT(info->elmt_suf2, " ")) +
strlen(OPT(info->line_suf, ""))) > ncols) {
ctx->need_prefix = TRUE;
}
/*
* Each OPTIONAL_LINE_BREAK embedded in the rendered string can cause
* the data to split across multiple lines. We display the sections
* one-at a time.
*/
for (secnum=0, multiline=0;
(section=strtok(secnum?NULL:s, OPTIONAL_LINE_BREAK));
secnum++) {
/*
* If the current section plus possible suffix and end-of-line
* information would cause the output to wrap then we need to
* start a new line.
*/
if ((ctx->cur_column + strlen(section) +
strlen(OPT(info->elmt_suf2, " ")) +
strlen(OPT(info->line_suf, ""))) > ncols) {
ctx->need_prefix = 1;
}
/*
* Print the prefix or separate the beginning of this element
* from the previous element.
*/
if (ctx->need_prefix) {
if (secnum) multiline++;
h5dump_simple_prefix(stream, info, ctx, i, secnum);
} else if (i && 0==secnum) {
fputs(OPT(info->elmt_suf2, " "), stream);
ctx->cur_column += strlen(OPT(info->elmt_suf2, " "));
}
/* Print the section */
fputs(section, stream);
ctx->cur_column += strlen(section);
}
ctx->prev_multiline = multiline;
}
h5dump_str_close(&buffer);
}
/*-------------------------------------------------------------------------
* Function: h5dump_simple_dset
*
* Purpose: Print some values from a dataset with a simple data space.
* This is a special case of h5dump_dset().
*
* Return: Success: 0
*
* Failure: -1
*
* Programmer: Robb Matzke
* Thursday, July 23, 1998
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static int
h5dump_simple_dset(FILE *stream, const h5dump_t *info, hid_t dset,
hid_t p_type)
{
hid_t f_space; /*file data space */
hsize_t elmtno, i; /*counters */
int carry; /*counter carry value */
hssize_t zero[8]; /*vector of zeros */
unsigned flags; /*buffer extent flags */
/* Print info */
h5dump_context_t ctx; /*print context */
size_t p_type_nbytes; /*size of memory type */
hsize_t p_nelmts; /*total selected elmts */
/* Stripmine info */
hsize_t sm_size[H5S_MAX_RANK]; /*stripmine size */
hsize_t sm_nbytes; /*bytes per stripmine */
hsize_t sm_nelmts; /*elements per stripmine*/
unsigned char *sm_buf=NULL; /*buffer for raw data */
hid_t sm_space; /*stripmine data space */
/* Hyperslab info */
hssize_t hs_offset[H5S_MAX_RANK];/*starting offset */
hsize_t hs_size[H5S_MAX_RANK]; /*size this pass */
hsize_t hs_nelmts; /*elements in request */
/*
* Check that everything looks okay. The dimensionality must not be too
* great and the dimensionality of the items selected for printing must
* match the dimensionality of the dataset.
*/
memset(&ctx, 0, sizeof ctx);
ctx.need_prefix = 1;
f_space = H5Dget_space(dset);
ctx.ndims = H5Sget_simple_extent_ndims(f_space);
if ((size_t)(ctx.ndims)>NELMTS(sm_size)) return -1;
/* Assume entire data space to be printed */
for (i=0; i<(hsize_t)(ctx.ndims); i++) ctx.p_min_idx[i] = 0;
H5Sget_simple_extent_dims(f_space, ctx.p_max_idx, NULL);
for (i=0, p_nelmts=1; i<(hsize_t)(ctx.ndims); i++) {
p_nelmts *= ctx.p_max_idx[i]-ctx.p_min_idx[i];
}
if (0==p_nelmts) return 0; /*nothing to print*/
/*
* Determine the strip mine size and allocate a buffer. The strip mine is
* a hyperslab whose size is manageable.
*/
p_type_nbytes = H5Tget_size(p_type);
for (i=ctx.ndims, sm_nbytes=p_type_nbytes; i>0; --i) {
sm_size[i-1] = MIN (ctx.p_max_idx[i-1] - ctx.p_min_idx[i-1],
H5DUMP_BUFSIZE/sm_nbytes);
sm_nbytes *= sm_size[i-1];
assert(sm_nbytes>0);
}
sm_buf = malloc(sm_nbytes);
sm_nelmts = sm_nbytes/p_type_nbytes;
sm_space = H5Screate_simple(1, &sm_nelmts, NULL);
/* The stripmine loop */
memset(hs_offset, 0, sizeof hs_offset);
memset(zero, 0, sizeof zero);
for (elmtno=0; elmtno<p_nelmts; elmtno+=hs_nelmts) {
/* Calculate the hyperslab size */
if (ctx.ndims>0) {
for (i=0, hs_nelmts=1; i<(hsize_t)(ctx.ndims); i++) {
hs_size[i] = MIN(ctx.p_max_idx[i]-hs_offset[i], sm_size[i]);
hs_nelmts *= hs_size[i];
}
H5Sselect_hyperslab(f_space, H5S_SELECT_SET, hs_offset, NULL,
hs_size, NULL);
H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL,
&hs_nelmts, NULL);
} else {
H5Sselect_all(f_space);
H5Sselect_all(sm_space);
hs_nelmts = 1;
}
/* Read the data */
if (H5Dread(dset, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf)<0) {
return -1;
}
/* Print the data */
flags = ((0==elmtno?START_OF_DATA:0) |
(elmtno+hs_nelmts>=p_nelmts?END_OF_DATA:0));
h5dump_simple_data(stream, info, &ctx, flags, hs_nelmts, p_type,
sm_buf);
/* Calculate the next hyperslab offset */
for (i=ctx.ndims, carry=1; i>0 && carry; --i) {
hs_offset[i-1] += hs_size[i-1];
if (hs_offset[i-1]==(hssize_t)(ctx.p_max_idx[i-1])) {
hs_offset[i-1] = ctx.p_min_idx[i-1];
} else {
carry = 0;
}
}
}
/* Terminate the output */
if (ctx.cur_column) {
fputs(OPT(info->line_suf, ""), stream);
putc('\n', stream);
fputs(OPT(info->line_sep, ""), stream);
}
H5Sclose(sm_space);
H5Sclose(f_space);
if (sm_buf) free(sm_buf);
return 0;
}
/*-------------------------------------------------------------------------
* Function: h5dump_simple_mem
*
* Purpose: Print some values from memory with a simple data space.
* This is a special case of h5dump_mem().
*
* Return: Success: 0
*
* Failure: -1
*
* Programmer: Robb Matzke
* Thursday, July 23, 1998
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static int
h5dump_simple_mem(FILE *stream, const h5dump_t *info, hid_t type,
hid_t space, void *mem)
{
hsize_t i; /*counters */
size_t size; /*size of each element */
hsize_t nelmts; /*total selected elmts */
h5dump_context_t ctx; /*printing context */
/*
* Check that everything looks okay. The dimensionality must not be too
* great and the dimensionality of the items selected for printing must
* match the dimensionality of the dataset.
*/
memset(&ctx, 0, sizeof ctx);
ctx.need_prefix = 1;
ctx.ndims = H5Sget_simple_extent_ndims(space);
if ((size_t)(ctx.ndims)>NELMTS(ctx.p_min_idx)) return -1;
/* Assume entire data space to be printed */
for (i=0; i<(hsize_t)(ctx.ndims); i++) ctx.p_min_idx[i] = 0;
H5Sget_simple_extent_dims(space, ctx.p_max_idx, NULL);
for (i=0, nelmts=1; i<(hsize_t)(ctx.ndims); i++) {
nelmts *= ctx.p_max_idx[i] - ctx.p_min_idx[i];
}
if (0==nelmts) return 0; /*nothing to print*/
size = H5Tget_size(type);
/* Print it */
h5dump_simple_data(stream, info, &ctx, START_OF_DATA|END_OF_DATA,
nelmts, type, mem);
/* Terminate the output */
if (ctx.cur_column) {
fputs(OPT(info->line_suf, ""), stream);
putc('\n', stream);
fputs(OPT(info->line_sep, ""), stream);
}
return 0;
}
/*-------------------------------------------------------------------------
* Function: h5dump_fixtype
*
* Purpose: Given a file data type choose a memory data type which is
* appropriate for printing the data.
*
* Return: Success: Memory data type
*
* Failure: FAIL
*
* Programmer: Robb Matzke
* Thursday, July 23, 1998
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
/*
strDUAction is TRUE when we want the dumputil way of
handling the string and is FALSE when we want the tools.c
way.
*/
hid_t
h5dump_fixtype(hid_t f_type, hbool_t strDUAction)
{
hid_t m_type=-1, f_memb;
hid_t *memb=NULL;
char **name=NULL;
int nmembs=0, i, j, *ndims=NULL;
size_t size, offset, *dims=NULL, nelmts;
H5T_str_t strpad;
size = H5Tget_size(f_type);
switch (H5Tget_class(f_type)) {
case H5T_INTEGER:
/*
* Use the smallest native integer type of the same sign as the file
* such that the memory type is at least as large as the file type.
* If there is no memory type large enough then use the largest
* memory type available.
*/
if (size<=sizeof(char)) {
m_type = H5Tcopy(H5T_NATIVE_SCHAR);
} else if (size<=sizeof(short)) {
m_type = H5Tcopy(H5T_NATIVE_SHORT);
} else if (size<=sizeof(int)) {
m_type = H5Tcopy(H5T_NATIVE_INT);
} else if (size<=sizeof(long)) {
m_type = H5Tcopy(H5T_NATIVE_LONG);
} else {
m_type = H5Tcopy(H5T_NATIVE_LLONG);
}
H5Tset_sign(m_type, H5Tget_sign(f_type));
break;
case H5T_FLOAT:
/*
* Use the smallest native floating point type available such that
* its size is at least as large as the file type. If there is not
* native type large enough then use the largest native type.
*/
if (size<=sizeof(float)) {
m_type = H5Tcopy(H5T_NATIVE_FLOAT);
} else if (size<=sizeof(double)) {
m_type = H5Tcopy(H5T_NATIVE_DOUBLE);
} else {
m_type = H5Tcopy(H5T_NATIVE_LDOUBLE);
}
break;
case H5T_TIME:
case H5T_STRING:
/*
this is needed because the function in dumputil.c is the
case where strDUAction == TRUE. if it is false we will do the
original action here.
*/
if (strDUAction == TRUE) {
m_type = H5Tcopy(H5T_C_S1);
H5Tset_size(m_type, size);
strpad = H5Tget_strpad(f_type) ;
H5Tset_strpad(m_type, strpad);
if (H5Tequal(m_type,f_type) < 0) {
H5Tclose(m_type);
m_type = H5Tcopy(H5T_FORTRAN_S1);
H5Tset_size(m_type, size);
H5Tset_strpad(m_type, strpad);
if (H5Tequal(m_type,f_type) < 0)
m_type = -1;
}
}
else {
m_type = H5Tcopy(f_type);
H5Tset_cset(m_type, H5T_CSET_ASCII);
}
break;
case H5T_COMPOUND:
/*
* We have to do this in two steps. The first step scans the file
* type and converts the members to native types and remembers all
* their names and sizes, computing the size of the memory compound
* type at the same time. Then we create the memory compound type
* and add the members.
*/
nmembs = H5Tget_nmembers(f_type);
memb = calloc(nmembs, sizeof(hid_t));
name = calloc(nmembs, sizeof(char*));
ndims = calloc(nmembs, sizeof(int));
dims = calloc(nmembs*4, sizeof(size_t));
for (i=0, size=0; i<nmembs; i++) {
/* Get the member type and fix it */
f_memb = H5Tget_member_type(f_type, i);
memb[i] = h5dump_fixtype(f_memb,strDUAction);
H5Tclose(f_memb);
if (memb[i]<0) goto done;
/* Get the member dimensions */
ndims[i] = H5Tget_member_dims(f_type, i, dims+i*4, NULL);
assert(ndims[i]>=0 && ndims[i]<=4);
for (j=0, nelmts=1; j<ndims[i]; j++) nelmts *= dims[i*4+j];
/* Get the member name */
name[i] = H5Tget_member_name(f_type, i);
if (NULL==name[i]) goto done;
/*
* Compute the new offset so each member is aligned on a byte
* boundary which is the same as the member size.
*/
size = ALIGN(size, H5Tget_size(memb[i])) +
nelmts * H5Tget_size(memb[i]);
}
m_type = H5Tcreate(H5T_COMPOUND, size);
for (i=0, offset=0; i<nmembs; i++) {
H5Tinsert_array(m_type, name[i], offset, ndims[i], dims+i*4,
NULL, memb[i]);
for (j=0, nelmts=1; j<ndims[i]; j++) nelmts *= dims[i*4+j];
offset = ALIGN(offset, H5Tget_size(memb[i])) +
nelmts * H5Tget_size(memb[i]);
}
break;
case H5T_ENUM:
m_type = H5Tcopy(f_type);
break;
case H5T_BITFIELD:
case H5T_OPAQUE:
/*
* These type classes are not implemented yet.
*/
break;
default:
/* What the heck? */
break;
}
done:
/* Clean up temp buffers */
if (memb && name && ndims && dims) {
for (i=0; i<nmembs; i++) {
if (memb[i]>=0) H5Tclose(memb[i]);
if (name[i]) free(name[i]);
}
free(memb);
free(name);
free(ndims);
free(dims);
}
return m_type;
}
/*-------------------------------------------------------------------------
* Function: h5dump_dset
*
* Purpose: Print some values from a dataset DSET to the file STREAM
* after converting all types to P_TYPE (which should be a
* native type). If P_TYPE is a negative value then it will be
* computed from the dataset type using only native types.
*
* Return: Success: 0
*
* Failure: -1
*
* Programmer: Robb Matzke
* Thursday, July 23, 1998
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
int
h5dump_dset(FILE *stream, const h5dump_t *info, hid_t dset, hid_t _p_type)
{
hid_t f_space;
hid_t p_type = _p_type;
hid_t f_type;
int status;
h5dump_t info_dflt;
/* Use default values */
if (!stream) stream = stdout;
if (!info) {
memset(&info_dflt, 0, sizeof info_dflt);
info = &info_dflt;
}
if (p_type<0) {
f_type = H5Dget_type(dset);
p_type = h5dump_fixtype(f_type,FALSE);
H5Tclose(f_type);
if (p_type<0) return -1;
}
/* Check the data space */
f_space = H5Dget_space(dset);
if (H5Sis_simple(f_space)<=0) return -1;
H5Sclose(f_space);
/* Print the data */
status = h5dump_simple_dset(stream, info, dset, p_type);
if (p_type!=_p_type) H5Tclose(p_type);
return status;
}
/*-------------------------------------------------------------------------
* Function: h5dump_mem
*
* Purpose: Displays the data contained in MEM. MEM must have the
* specified data TYPE and SPACE. Currently only simple data
* spaces are allowed and only the `all' selection.
*
* Return: Success: 0
*
* Failure: -1
*
* Programmer: Robb Matzke
* Wednesday, January 20, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
int
h5dump_mem(FILE *stream, const h5dump_t *info, hid_t type, hid_t space,
void *mem)
{
h5dump_t info_dflt;
/* Use default values */
if (!stream) stream = stdout;
if (!info) {
memset(&info_dflt, 0, sizeof info_dflt);
info = &info_dflt;
}
/* Check the data space */
if (H5Sis_simple(space)<=0) return -1;
return h5dump_simple_mem(stream, info, type, space, mem);
}
/*************************************************************************/
/*from h5dumputil.c*/
/*-------------------------------------------------------------------------
* Function: display_numeric_data
*
* Purpose: Display numeric data in ddl format.
*
* Return: void
*
* Comment: hs_nelmts number of elements to be printed
* p_type memory data type
* sm_buf data buffer
* p_type_nbytes size of p_type
* p_nelmts total number of elements
* dim_n_size size of dimemsion n
* elmtno element index
*
*-------------------------------------------------------------------------
*/
static void display_numeric_data
(hsize_t hs_nelmts, hid_t p_type, unsigned char *sm_buf, size_t p_type_nbytes,
hsize_t p_nelmts, hsize_t dim_n_size, hsize_t elmtno) {
hsize_t i;
//char p_buf[256];
char out_buf[NCOLS];
struct h5dump_str_t tempstr;
out_buf[0] = '\0';
if ((indent+COL) > NCOLS) indent = 0;
memset(&tempstr, 0, sizeof(h5dump_str_t));
for (i=0; i<hs_nelmts && (elmtno+i) < p_nelmts; i++) {
h5dump_str_reset(&tempstr);
h5dump_sprint(&tempstr, NULL,p_type, sm_buf+i*p_type_nbytes);
if ((int)(strlen(out_buf)+strlen(tempstr.s)+1) > (NCOLS-indent-COL)) {
/* first row of member */
if (compound_data && (elmtno+i+1) == dim_n_size)
printf("%s\n", out_buf);
else {
indentation(indent+COL);
printf("%s\n", out_buf);
}
strcpy(out_buf, tempstr.s);
if ((elmtno+i+1) % dim_n_size)
strcat(out_buf, ", ");
else { /* end of a row, flush out_buf */
indentation(indent+COL);
printf("%s", out_buf);
if ((elmtno+i+1) != p_nelmts) /* not last element */
printf(",\n");
else if (compound_data) { /* last element of member data*/
if ((NCOLS-strlen(out_buf)-indent-COL) < 2) {
/* 2 for space and ] */
printf("\n");
indentation(indent+COL-3);
}
} else
printf("\n"); /* last row */
*out_buf = '\0';
}
} else {
strcat(out_buf, tempstr.s);
if ((elmtno+i+1) % dim_n_size) {
if ((NCOLS-strlen(out_buf)-indent-COL-1) > 0)
strcat(out_buf, ", ");
else
strcat(out_buf, ",");
} else { /* end of a row */
/* 1st row of member data */
if (compound_data && (elmtno+i+1) == dim_n_size)
printf("%s", out_buf);
else {
indentation(indent+COL);
printf("%s", out_buf);
}
/* if it's the last element */
if ((elmtno+i+1) != p_nelmts)
printf(",\n");
else if (compound_data) { /* last row of member data*/
/* 2 for space and ] */
if ((NCOLS-strlen(out_buf)-indent-COL) < 2) {
printf("\n");
indentation(indent+COL-3);
}
} else
printf("\n"); /* last row */
*out_buf = '\0';
}
}
}
}
/*-------------------------------------------------------------------------
* Function: display_string
*
* Purpose: Display string in ddl format
*
* Return: void
*
* Comment: concatenator operator : '//'
* separator between elements: ','
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static void display_string
(hsize_t hs_nelmts, hid_t p_type, unsigned char *sm_buf, size_t p_type_nbytes,
hsize_t p_nelmts, hsize_t dim_n_size, hsize_t elmtno) {
hsize_t i, row_size=0;
int j, m, x, y, z, first_row=1;
int free_space, long_string = 0;
char out_buf[NCOLS];
struct h5dump_str_t tempstr;
out_buf[0] = '\0';
memset(&tempstr, 0, sizeof(h5dump_str_t));
h5dump_str_reset(&tempstr);
for (i=0; i<hs_nelmts && (elmtno+i) < p_nelmts; i++) {
row_size++;
h5dump_str_reset(&tempstr);
h5dump_sprint(&tempstr, NULL,p_type, sm_buf+i*p_type_nbytes);
free_space = NCOLS - indent - COL - strlen(out_buf);
if ((elmtno+i+1) == p_nelmts) { /* last element */
/* 2 for double quotes */
if (((int)strlen(tempstr.s) + 2) > free_space) long_string = 1;
} else
/* 3 for double quotes and one comma */
if (((int)strlen(tempstr.s) + 3) > free_space) long_string = 1;
if (long_string) {
if (free_space < 5) { /* 5 for double quotes, one space and two '/'s */
/* flush out_buf */
if (compound_data && first_row) {
printf("%s\n", out_buf);
first_row = 0;
} else {
indentation(indent+COL);
printf("%s\n", out_buf);
}
out_buf[0] = '\0';
x = 0 ;
} else {
x = free_space - 5;
if (compound_data && first_row) {
printf("%s\"", out_buf);
strncpy(out_buf, tempstr.s, x);
out_buf[x] = '\0';
printf("%s\" //\n", out_buf);
first_row = 0;
} else {
indentation(indent+COL);
printf("%s\"", out_buf);
strncpy(out_buf, tempstr.s, x);
out_buf[x] = '\0';
printf("%s\" //\n", out_buf);
}
out_buf[0] = '\0';
}
y = NCOLS - indent -COL - 5;
m = (strlen(tempstr.s) - x)/y;
z = (strlen(tempstr.s) - x) % y;
for (j = 0; j < m - 1 ; j++) {
indentation(indent+COL);
strncpy(out_buf, tempstr.s+x+j*y, y);
out_buf[y] = '\0';
printf("\"%s\" //\n", out_buf);
}
if ((elmtno+i+1) == p_nelmts) { /* last element */
if ((int)strlen(tempstr.s+x+j*y) > (NCOLS - indent - COL -2)) { /* 2 for double quotes */
indentation(indent+COL);
strncpy(out_buf, tempstr.s+x+j*y, y);
out_buf[y] = '\0';
printf("\"%s\" //\n", out_buf);
indentation(indent+COL);
printf("\"%s\"", tempstr.s+x+m*y);
if (compound_data) {
if ((NCOLS-strlen(out_buf)-indent-COL) < 2) {
printf("\n");
indentation(indent+COL-3);
}
} else
printf("\n");
} else {
indentation(indent+COL);
printf("\"%s\"", tempstr.s+x+j*y);
if (compound_data) {
if ((NCOLS-strlen(out_buf)-indent-COL) < 2) {
printf("\n");
indentation(indent+COL-3);
}
} else
printf("\n");
}
out_buf[0] = '\0';
} else if ( row_size == dim_n_size) {
if ((int)strlen(tempstr.s+x+j*y) > (NCOLS - indent - COL -3)) { /* 3 for 2 "'s and 1 , */
indentation(indent+COL);
strncpy(out_buf, tempstr.s+x+j*y, y);
out_buf[y] = '\0';
printf("\"%s\" //\n", out_buf);
indentation(indent+COL);
printf("\"%s\",\n", tempstr.s+x+m*y);
} else {
indentation(indent+COL);
printf("\"%s\",\n", tempstr.s+x+j*y);
}
out_buf[0] = '\0';
row_size = 0;
} else {
if ((int)strlen(tempstr.s+x+j*y) > (NCOLS - indent - COL -3)) { /* 3 for 2 "'s and 1 , */
indentation(indent+COL);
strncpy(out_buf, tempstr.s+x+j*y, y);
out_buf[y] = '\0';
printf("\"%s\" //\n", out_buf);
strcpy(out_buf, "\"");
strcat(out_buf, tempstr.s+x+m*y);
strcat(out_buf, "\",");
if ((int)strlen(out_buf) < (NCOLS-indent-COL)) strcat(out_buf, " ");
} else {
strcpy(out_buf, "\"");
strcat (out_buf, tempstr.s+x+j*y);
strcat(out_buf, "\",");
if ((int)strlen(out_buf) < (NCOLS-indent-COL)) strcat(out_buf, " ");
}
}
long_string = 0;
} else {
/* flush out_buf if it's end of a row */
if (row_size == dim_n_size) {
if (compound_data && (elmtno+i+1) == dim_n_size) { /* 1st row */
printf("%s\"%s\"", out_buf, tempstr.s);
first_row = 0;
} else {
indentation(indent+COL);
printf("%s\"%s\"", out_buf, tempstr.s);
}
if ((elmtno+i+1) != p_nelmts)
printf(",\n");
else if (compound_data) {
if ((NCOLS-strlen(out_buf)-strlen(tempstr.s)-indent-COL) < 2) {
/* 2 for space and ] */
printf("\n");
indentation(indent+COL-3);
}
} else
printf("\n");
out_buf[0] = '\0';
row_size = 0;
} else {
strcat(out_buf, "\"");
strcat(out_buf, tempstr.s);
strcat(out_buf, "\",");
if ((int)strlen(out_buf) < (NCOLS-indent-COL)) strcat(out_buf, " ");
}
}
}
}
/*-------------------------------------------------------------------------
* Function: display_compound_data
*
* Purpose: Display compound data in ddl format
*
* Return: void
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static void display_compound_data
(hsize_t hs_nelmts, hid_t p_type, unsigned char *sm_buf, size_t p_type_nbytes,
hsize_t p_nelmts, hsize_t elmtno) {
size_t offset, size, dims[4];
hsize_t nelmts, dim_n_size=0;
hid_t memb;
int nmembs, i, j, k, ndims, perm[4];
if ((indent+COL) > NCOLS) indent = 0;
for (i=0; i<(int)hs_nelmts && (elmtno+i) < p_nelmts; i++) {
nmembs = H5Tget_nmembers(p_type);
indentation(indent+COL);
printf("{\n");
indent+= COL;
for (j=0; j<nmembs; j++) {
offset = H5Tget_member_offset(p_type, j);
memb = H5Tget_member_type(p_type, j);
size = H5Tget_size(memb);
ndims = H5Tget_member_dims(p_type, j, dims, perm);
if (ndims > 0) dim_n_size = dims[ndims-1];
else dim_n_size = 1;
for (k=0, nelmts=1; k<ndims; k++) nelmts *= dims[k];
indentation(indent+COL);
printf("[ ");
indent+=2;
switch (H5Tget_class(memb)) {
case H5T_INTEGER:
display_numeric_data
(nelmts, memb, sm_buf+offset+i*p_type_nbytes, size, nelmts, dim_n_size, 0) ;
break;
case H5T_FLOAT:
display_numeric_data
(nelmts, memb, sm_buf+offset+i*p_type_nbytes, size, nelmts, dim_n_size, 0) ;
break;
case H5T_TIME:
break;
case H5T_STRING:
display_string
(nelmts, memb, sm_buf+offset+i*p_type_nbytes, size, nelmts, dim_n_size, 0 ) ;
break;
case H5T_BITFIELD:
break;
case H5T_OPAQUE:
break;
default: break;
}
indent-=2;
if ( j == nmembs-1) printf(" ]\n");
else printf(" ],\n");
H5Tclose(memb);
}
indent-= COL;
indentation(indent+COL);
if ((elmtno+i+1) == p_nelmts) printf("}\n");
else printf("},\n");
}
}
/*-------------------------------------------------------------------------
* Function: h5dump_simple
*
* Purpose: Print some values from a dataset or an attribute with a
* simple data space.
*
* Return: Success: 0
*
* Failure: -1
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static int
h5dump_simple(hid_t oid, hid_t p_type, int obj_data)
{
hid_t f_space; /*file data space */
int ndims; /*dimensionality */
hsize_t elmtno, i; /*counters */
int carry; /*counter carry value */
hssize_t zero[8]; /*vector of zeros */
/* Print info */
hsize_t p_min_idx[8]; /*min selected index */
hsize_t p_max_idx[8]; /*max selected index */
size_t p_type_nbytes; /*size of memory type */
hsize_t p_nelmts; /*total selected elmts */
/* Stripmine info */
hsize_t sm_size[8]; /*stripmine size */
hsize_t sm_nbytes; /*bytes per stripmine */
hsize_t sm_nelmts; /*elements per stripmine*/
unsigned char *sm_buf; /*buffer for raw data */
hid_t sm_space; /*stripmine data space */
/* Hyperslab info */
hssize_t hs_offset[8]; /*starting offset */
hsize_t hs_size[8]; /*size this pass */
hsize_t hs_nelmts; /*elements in request */
hsize_t dim_n_size;
if (obj_data == DATASET_DATA)
f_space = H5Dget_space(oid);
else
f_space = H5Aget_space(oid);
/*
* Check that everything looks okay. The dimensionality must not be too
* great and the dimensionality of the items selected for printing must
* match the dimensionality of the dataset.
*/
ndims = H5Sget_simple_extent_ndims(f_space);
if ((size_t)ndims>NELMTS(sm_size)) return -1;
/* Assume entire data space to be printed */
for (i=0; i<(hsize_t)ndims; i++) p_min_idx[i] = 0;
H5Sget_simple_extent_dims(f_space, p_max_idx, NULL);
for (i=0, p_nelmts=1; i<(hsize_t)ndims; i++) {
p_nelmts *= p_max_idx[i]-p_min_idx[i];
}
if (0==p_nelmts) return 0; /*nothing to print*/
/*
* Determine the strip mine size and allocate a buffer. The strip mine is
* a hyperslab whose size is manageable.
*/
p_type_nbytes = H5Tget_size(p_type);
for (i=ndims, sm_nbytes=p_type_nbytes; i>0; --i) {
sm_size[i-1] = MIN (p_max_idx[i-1]-p_min_idx[i-1],
H5DUMP_BUFSIZE/sm_nbytes);
sm_nbytes *= sm_size[i-1];
assert(sm_nbytes>0);
}
sm_buf = malloc(sm_nbytes);
sm_nelmts = sm_nbytes/p_type_nbytes;
sm_space = H5Screate_simple(1, &sm_nelmts, NULL);
/* The stripmine loop */
memset(hs_offset, 0, sizeof hs_offset);
memset(zero, 0, sizeof zero);
for (elmtno=0; elmtno<p_nelmts; elmtno+=hs_nelmts) {
/* Calculate the hyperslab size */
if (ndims > 0) {
for (i=0, hs_nelmts=1; i<(hsize_t)ndims; i++) {
hs_size[i] = MIN(sm_size[i], p_max_idx[i]-hs_offset[i]);
hs_nelmts *= hs_size[i];
}
H5Sselect_hyperslab(f_space, H5S_SELECT_SET, hs_offset, NULL,
hs_size, NULL);
H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL,
&hs_nelmts, NULL);
dim_n_size = p_max_idx[ndims-1];
} else {
H5Sselect_all(f_space);
H5Sselect_all(sm_space);
hs_nelmts = 1;
dim_n_size = 1;
}
if (obj_data == DATASET_DATA) {
if (H5Dread(oid, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf) <0)
return -1;
} else {
if (H5Aread(oid, p_type, sm_buf) < 0)
return -1;
}
/* Print the data */
switch (H5Tget_class(p_type)) {
case H5T_INTEGER:
display_numeric_data (hs_nelmts, p_type, sm_buf, p_type_nbytes,
p_nelmts, dim_n_size, elmtno);
break;
case H5T_FLOAT:
display_numeric_data (hs_nelmts, p_type, sm_buf, p_type_nbytes,
p_nelmts, dim_n_size, elmtno);
break;
case H5T_TIME:
break;
case H5T_STRING:
display_string (hs_nelmts, p_type, sm_buf, p_type_nbytes,
p_nelmts, dim_n_size, elmtno);
break;
case H5T_BITFIELD:
break;
case H5T_OPAQUE:
break;
case H5T_COMPOUND:
compound_data = 1;
display_compound_data (hs_nelmts, p_type, sm_buf, p_type_nbytes, p_nelmts, elmtno);
compound_data = 0;
break;
default: break;
}
/* Calculate the next hyperslab offset */
for (i=ndims, carry=1; i>0 && carry; --i) {
hs_offset[i-1] += hs_size[i-1];
if (hs_offset[i-1]==(hssize_t)p_max_idx[i-1]) {
hs_offset[i-1] = p_min_idx[i-1];
} else {
carry = 0;
}
}
}
H5Sclose(sm_space);
H5Sclose(f_space);
return 0;
}
/*-------------------------------------------------------------------------
* Function: print_data
*
* Purpose: Print some values from a dataset or an attribute to the
* file STREAM after converting all types to P_TYPE (which
* should be a native type). If P_TYPE is a negative value
* then it will be computed from the dataset/attribute type
* using only native types.
*
* Return: Success: 0
*
* Failure: -1
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
int
print_data(hid_t oid, hid_t _p_type, int obj_data)
{
hid_t f_space;
hid_t p_type = _p_type;
hid_t f_type;
int status = -1;
if (p_type < 0) {
if (obj_data == DATASET_DATA)
f_type = H5Dget_type(oid);
else
f_type = H5Aget_type(oid);
if (f_type < 0) return status;
p_type = h5dump_fixtype(f_type,TRUE);
H5Tclose(f_type);
if (p_type < 0) return status;
}
/* Check the data space */
if (obj_data == DATASET_DATA)
f_space = H5Dget_space(oid);
else
f_space = H5Aget_space(oid);
if (f_space < 0) return status;
if (H5Sis_simple(f_space) >= 0)
status = h5dump_simple(oid, p_type, obj_data);
H5Sclose(f_space);
if (p_type != _p_type) H5Tclose(p_type);
return status;
}
/*-------------------------------------------------------------------------
* Function: indentation
*
* Purpose: Print spaces for indentation
*
* Return: void
*
* Programmer: Ruey-Hsia Li
*
* Modifications:
*
*-----------------------------------------------------------------------*/
void indentation(int x) {
while (x>0) { printf(" "); x--; }
}
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