mirror of
https://github.com/HDFGroup/hdf5.git
synced 2024-12-27 08:01:04 +08:00
dc9288a447
Purpose:
Remove H5_MPI_SPECIAL_COLLECTIVE_IO_WORKS and
H5_MPI_COMPLEX_DERIVED_DATATYPE_WORKS #defines from source.
Description:
Two advanced parallel functionalities, special collective IO and
complex derived datatypes, are not supported by older
implementations of mpi, and thus our code limits the use of these
features with #ifdefs and has checks in configure to set them (or
not). Unfortunately, configure can't actually run a parallel check
to see if these features are working (nor not) so it resorts to
looking in the config files where they are explicity enabled or
disabled based on versions of mpi, sytems being built on, or for
no documented reason at all (i.e. just set to on or off as some
'default'). Overriding these settings is easy if need be, provided
it is known that it needs to be done to get improved performance,
and oftentimes it is not.
Most new MPI implementations successfully handle the functionality
requested when these #defines are set, and many of the "turn these
features off" cases in the config files are for old (> 5 years)
versions of MPI and retired systems (such as NCSA's tungsten).
Therefore, the decision has been made to remove the support for
these old versions of MPI and systems that cannot handle these
behaviors. The #ifdefs and supporting setup in the config/ files
and configure script has been removed, and the code executed when
these options were not set removed from the source.
In passing, this commit also cleans up some whitespace issues in
both t_mpi.c and H5Dmpio.c. Furthermore, in t_mpi.c, the special
collective IO test was not getting regularly run due to it being
written to work only with four processes (we regularly test with
six, previously with three), and thus it failed when actually run
due to an out of bounds data buffer assignment. It has been
modified to run at any number of processes greater than four, and
the memory problem has been fixed so the test passes.
Tested:
jam, h5committest, ember
165 lines
7.5 KiB
Bash
165 lines
7.5 KiB
Bash
# -*- shell-script -*-
|
|
#
|
|
# Copyright by The HDF Group.
|
|
# Copyright by the Board of Trustees of the University of Illinois.
|
|
# All rights reserved.
|
|
#
|
|
# This file is part of HDF5. The full HDF5 copyright notice, including
|
|
# terms governing use, modification, and redistribution, is contained in
|
|
# the files COPYING and Copyright.html. COPYING can be found at the root
|
|
# of the source code distribution tree; Copyright.html can be found at the
|
|
# root level of an installed copy of the electronic HDF5 document set and
|
|
# is linked from the top-level documents page. It can also be found at
|
|
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
|
|
# access to either file, you may request a copy from help@hdfgroup.org.
|
|
|
|
|
|
# This file is part of the HDF5 build script. It is processed shortly
|
|
# after configure starts and defines, among other things, flags for
|
|
# the various compile modes.
|
|
#
|
|
# See BlankForm in this directory for details.
|
|
|
|
# This is for the ASCI RED STORM machine
|
|
|
|
# Define RUNPARALLEL and RUNSERIAL if parallel mode is enabled or a parallel
|
|
# compiler is used.
|
|
if test "X-$enable_parallel" = "X-yes" -o X-$CC_BASENAME = X-mpicc; then
|
|
RUNSERIAL=${RUNSERIAL:-"yod -sz 1"}
|
|
RUNPARALLEL=${RUNPARALLEL:-"yod -sz 3"}
|
|
# Disable stream-vfd option. It does not work in parallel mode.
|
|
enable_stream_vfd="${enable_stream_vfd:-no}"
|
|
# Turn off shared lib option. It does not work in parallel mode.
|
|
enable_shared="${enable_shared:-no}"
|
|
fi
|
|
|
|
H5_CFLAGS="$H5_CFLAGS -DRED_STORM"
|
|
|
|
# What compiler flags should be used for code development?
|
|
DEBUG_CFLAGS=-g
|
|
DEBUG_CPPFLAGS=
|
|
|
|
# What compiler flags should be used for building a production
|
|
# library?
|
|
PROD_CFLAGS=-O
|
|
PROD_CPPFLAGS=
|
|
|
|
# What compiler flags enable code profiling?
|
|
PROFILE_CFLAGS=-pg
|
|
PROFILE_CPPFLAGS=
|
|
|
|
# Set this to the width required by printf() to print type `long
|
|
# long'. For instance, if the format would be `%lld' then set it to
|
|
# `ll' or if the format would be `%qd' set it to `q'.
|
|
hdf5_cv_printf_ll=${hdf5_cv_printf_ll='ll'}
|
|
|
|
# Cache the sizeof of the following types to save configure time.
|
|
# These are verified in test/tconfig in case they change.
|
|
ac_cv_type_char=${ac_cv_type_char=yes}
|
|
ac_cv_sizeof_char=${ac_cv_sizeof_char='1'}
|
|
ac_cv_type_short=${ac_cv_type_short=yes}
|
|
ac_cv_sizeof_short=${ac_cv_sizeof_short='2'}
|
|
ac_cv_type_int=${ac_cv_type_int=yes}
|
|
ac_cv_sizeof_int=${ac_cv_sizeof_int='4'}
|
|
ac_cv_type_long=${ac_cv_type_long=yes}
|
|
ac_cv_sizeof_long=${ac_cv_sizeof_long='8'}
|
|
ac_cv_type_float=${ac_cv_type_float=yes}
|
|
ac_cv_sizeof_float=${ac_cv_sizeof_float='4'}
|
|
ac_cv_type_double=${ac_cv_type_double=yes}
|
|
ac_cv_sizeof_double=${ac_cv_sizeof_double='8'}
|
|
ac_cv_type_long_double=${ac_cv_type_long_double=yes}
|
|
# no cache for long double which varies in size in different compilers.
|
|
# gcc defines it as 12 bytes but pgcc defines it as 8 bytes.
|
|
#ac_cv_sizeof_long_double=${ac_cv_sizeof_long_double='8'}
|
|
ac_cv_type_long_long=${ac_cv_type_long_long=yes}
|
|
ac_cv_sizeof_long_long=${ac_cv_sizeof_long_long='8'}
|
|
ac_cv_type_size_t=${ac_cv_type_size_t=yes}
|
|
ac_cv_sizeof_size_t=${ac_cv_sizeof_size_t='8'}
|
|
ac_cv_type_ssize_t=${ac_cv_type_ssize_t=yes}
|
|
ac_cv_sizeof_ssize_t=${ac_cv_sizeof_ssize_t='8'}
|
|
ac_cv_type_off_t=${ac_cv_type_off_t=yes}
|
|
ac_cv_sizeof_off_t=${ac_cv_sizeof_off_t='8'}
|
|
|
|
# Hard set sizeof of the following types to 0 because they are not supported.
|
|
#ac_cv_type___int64=${ac_cv_type___int64=no}
|
|
#ac_cv_sizeof___int64=${ac_cv_sizeof___int64='0'}
|
|
|
|
# Hard set malloc of zero bytes to no because it does not work.
|
|
hdf5_cv_malloc_works=${hdf5_cv_malloc_works='no'}
|
|
|
|
# Cache the sizeof of the following types to save configure time.
|
|
# These are verified in test/tconfig in case they change.
|
|
ac_cv_type_int8_t=${ac_cv_type_int8_t=yes}
|
|
ac_cv_type_int16_t=${ac_cv_type_int16_t=yes}
|
|
ac_cv_type_int32_t=${ac_cv_type_int32_t=yes}
|
|
ac_cv_type_int64_t=${ac_cv_type_int64_t=yes}
|
|
ac_cv_type_uint8_t=${ac_cv_type_uint8_t=yes}
|
|
ac_cv_type_uint16_t=${ac_cv_type_uint16_t=yes}
|
|
ac_cv_type_uint32_t=${ac_cv_type_uint32_t=yes}
|
|
ac_cv_type_uint64_t=${ac_cv_type_uint64_t=yes}
|
|
ac_cv_sizeof_int8_t=${ac_cv_sizeof_int8_t='1'}
|
|
ac_cv_sizeof_int16_t=${ac_cv_sizeof_int16_t='2'}
|
|
ac_cv_sizeof_int32_t=${ac_cv_sizeof_int32_t='4'}
|
|
ac_cv_sizeof_int64_t=${ac_cv_sizeof_int64_t='8'}
|
|
ac_cv_sizeof_uint8_t=${ac_cv_sizeof_uint8_t='1'}
|
|
ac_cv_sizeof_uint16_t=${ac_cv_sizeof_uint16_t='2'}
|
|
ac_cv_sizeof_uint32_t=${ac_cv_sizeof_uint32_t='4'}
|
|
ac_cv_sizeof_uint64_t=${ac_cv_sizeof_uint64_t='8'}
|
|
|
|
# Cache the sizeof of the following types to save configure time.
|
|
# These are verified in test/tconfig in case they change.
|
|
ac_cv_type_int_least8_t=${ac_cv_type_int_least8_t=yes}
|
|
ac_cv_type_int_least16_t=${ac_cv_type_int_least16_t=yes}
|
|
ac_cv_type_int_least32_t=${ac_cv_type_int_least32_t=yes}
|
|
ac_cv_type_int_least64_t=${ac_cv_type_int_least64_t=yes}
|
|
ac_cv_type_uint_least8_t=${ac_cv_type_uint_least8_t=yes}
|
|
ac_cv_type_uint_least16_t=${ac_cv_type_uint_least16_t=yes}
|
|
ac_cv_type_uint_least32_t=${ac_cv_type_uint_least32_t=yes}
|
|
ac_cv_type_uint_least64_t=${ac_cv_type_uint_least64_t=yes}
|
|
ac_cv_sizeof_int_least8_t=${ac_cv_sizeof_int_least8_t='1'}
|
|
ac_cv_sizeof_int_least16_t=${ac_cv_sizeof_int_least16_t='2'}
|
|
ac_cv_sizeof_int_least32_t=${ac_cv_sizeof_int_least32_t='4'}
|
|
ac_cv_sizeof_int_least64_t=${ac_cv_sizeof_int_least64_t='8'}
|
|
ac_cv_sizeof_uint_least8_t=${ac_cv_sizeof_uint_least8_t='1'}
|
|
ac_cv_sizeof_uint_least16_t=${ac_cv_sizeof_uint_least16_t='2'}
|
|
ac_cv_sizeof_uint_least32_t=${ac_cv_sizeof_uint_least32_t='4'}
|
|
ac_cv_sizeof_uint_least64_t=${ac_cv_sizeof_uint_least64_t='8'}
|
|
|
|
# Cache the sizeof of the following types to save configure time.
|
|
# These are verified in test/tconfig in case they change.
|
|
ac_cv_type_int_fast8_t=${ac_cv_type_int_fast8_t=yes}
|
|
ac_cv_type_int_fast16_t=${ac_cv_type_int_fast16_t=yes}
|
|
ac_cv_type_int_fast32_t=${ac_cv_type_int_fast32_t=yes}
|
|
ac_cv_type_int_fast64_t=${ac_cv_type_int_fast64_t=yes}
|
|
ac_cv_type_uint_fast8_t=${ac_cv_type_uint_fast8_t=yes}
|
|
ac_cv_type_uint_fast16_t=${ac_cv_type_uint_fast16_t=yes}
|
|
ac_cv_type_uint_fast32_t=${ac_cv_type_uint_fast32_t=yes}
|
|
ac_cv_type_uint_fast64_t=${ac_cv_type_uint_fast64_t=yes}
|
|
ac_cv_sizeof_int_fast8_t=${ac_cv_sizeof_int_fast8_t='1'}
|
|
ac_cv_sizeof_int_fast16_t=${ac_cv_sizeof_int_fast16_t='8'}
|
|
ac_cv_sizeof_int_fast32_t=${ac_cv_sizeof_int_fast32_t='8'}
|
|
ac_cv_sizeof_int_fast64_t=${ac_cv_sizeof_int_fast64_t='8'}
|
|
ac_cv_sizeof_uint_fast8_t=${ac_cv_sizeof_uint_fast8_t='1'}
|
|
ac_cv_sizeof_uint_fast16_t=${ac_cv_sizeof_uint_fast16_t='8'}
|
|
ac_cv_sizeof_uint_fast32_t=${ac_cv_sizeof_uint_fast32_t='8'}
|
|
ac_cv_sizeof_uint_fast64_t=${ac_cv_sizeof_uint_fast64_t='8'}
|
|
|
|
hdf5_cv_system_scope_threads=${hdf5_cv_system_scope_threads="no"}
|
|
|
|
# Hard set MPI_File_set_size() working for files over 2GB to yes
|
|
hdf5_cv_mpi_file_set_size_big=${hdf5_cv_mpi_file_set_size_big='yes'}
|
|
|
|
# Hard set variables for v1.7 and higher.
|
|
# Set gettimeofday_tz to yes.
|
|
hdf5_cv_gettimeofday_tz=${hdf5_cv_gettimeofday_tz='yes'}
|
|
hdf5_cv_convert_denormal_float=${hdf5_cv_convert_denormal_float='no'}
|
|
hdf5_cv_fp_to_ullong_bottom_bit_works=${hdf5_cv_fp_to_ullong_bottom_bit_works='no'}
|
|
hdf5_cv_fp_to_ullong_right_maximum=${hdf5_cv_fp_to_ullong_right_maximum='yes'}
|
|
hdf5_cv_ldouble_to_uint_works=${hdf5_cv_ldouble_to_uint_works='yes'}
|
|
hdf5_cv_sw_ldouble_to_integer_works=${hdf5_cv_sw_ldouble_to_integer_works='yes'}
|
|
hdf5_cv_sw_ulong_to_fp_bottom_bit_works=${hdf5_cv_sw_ulong_to_fp_bottom_bit_works='no'}
|
|
hdf5_cv_ullong_to_fp_cast_works=${hdf5_cv_ullong_to_fp_cast_works='yes'}
|
|
hdf5_cv_ullong_to_ldouble_precision_works=${hdf5_cv_ullong_to_ldouble_precision_works='yes'}
|
|
hdf5_cv_vsnprintf_works=${hdf5_cv_vsnprintf_works='yes'}
|
|
hdf5_cv_fp_to_integer_overflow_works=${hdf5_cv_fp_to_integer_overflow_works='yes'}
|