hdf5/tools/lib/h5tools_ref.c
Dana Robinson 44a00ef876
Strip HD prefix from string/char C API calls (#3540)
* Strip HD prefix from string/char C API calls

* HD(f)(put|get)(s|c)
* HDstr*
* HDv*printf
* HD(s)(print|scan)f
* HDperror

But NOT:

* HDstrcase*
* HDvasprintf
* HDstrtok_r
* HDstrndup

As those are not C99 and have portability work-around
implementations. They will be handled later.

* Fix th5_system.c screwup
2023-09-15 15:13:18 -07:00

372 lines
11 KiB
C

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#include "h5tools_ref.h"
#include "H5private.h"
#include "H5SLprivate.h"
#include "h5tools.h"
#include "h5tools_utils.h"
#include "h5trav.h"
#include "H5VLnative_private.h"
/*
* Table to look up a path name for an object
* reference.
*
* This table stores mappings of reference -> path
* for all objects in the file that may be the target of
* an object reference.
*
* The 'path' is an absolute path by which the object
* can be accessed. When an object has > 1 such path,
* only one will be used in the table, with no particular
* method of selecting which one.
*/
typedef struct {
H5O_token_t obj_token; /* Object token */
char *path; /* Object path */
} ref_path_node_t;
static H5SL_t *ref_path_table = NULL; /* the "table" (implemented with a skip list) */
static hid_t thefile = (-1);
static int ref_path_table_put(const char *, const H5O_token_t *token);
/*-------------------------------------------------------------------------
* Function: free_ref_path_info
*
* Purpose: Free the key for a reference path table node
*
* Return: Non-negative on success, negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
free_ref_path_info(void *item, void H5_ATTR_UNUSED *key, void H5_ATTR_UNUSED *operator_data /*in,out*/)
{
ref_path_node_t *node = (ref_path_node_t *)item;
free(node->path);
free(node);
return (0);
}
/*-------------------------------------------------------------------------
* Function: init_ref_path_cb
*
* Purpose: Called by iterator to create references for
* all objects and enter them in the table.
*
* Return: Error status.
*
*-------------------------------------------------------------------------
*/
static herr_t
init_ref_path_cb(const char *obj_name, const H5O_info2_t *oinfo, const char *already_seen,
void H5_ATTR_UNUSED *_udata)
{
/* Check if the object is already in the path table */
if (NULL == already_seen) {
/* Insert the object into the path table */
ref_path_table_put(obj_name, &oinfo->token);
} /* end if */
return 0;
}
/*-------------------------------------------------------------------------
* Function: ref_path_table_cmp
*
* Purpose: Skip list key comparison function which compares two
* H5O_token_t objects.
*
* Return: Negative (if token2 is greater than token1)
* 0 (if tokens are equal)
* or
* Positive (if token1 is greater than token2)
*
*-------------------------------------------------------------------------
*/
static int
ref_path_table_cmp(const void *key1, const void *key2)
{
const H5O_token_t *token1 = (const H5O_token_t *)key1;
const H5O_token_t *token2 = (const H5O_token_t *)key2;
int cmp_value = 0;
if (thefile > 0)
H5Otoken_cmp(thefile, token1, token2, &cmp_value);
else
cmp_value = memcmp(token1, token2, sizeof(H5O_token_t));
return cmp_value;
}
/*-------------------------------------------------------------------------
* Function: init_ref_path_table
*
* Purpose: Initialize the reference path table
*
* Return: Non-negative on success, negative on failure
*
*-------------------------------------------------------------------------
*/
static int
init_ref_path_table(void)
{
/* Sanity check */
if (thefile > 0) {
/* Create skip list to store reference path information */
if ((ref_path_table = H5SL_create(H5SL_TYPE_GENERIC, ref_path_table_cmp)) == NULL)
return (-1);
/* Iterate over objects in this file */
if (h5trav_visit(thefile, "/", true, true, init_ref_path_cb, NULL, NULL, H5O_INFO_BASIC) < 0) {
error_msg("unable to construct reference path table\n");
h5tools_setstatus(EXIT_FAILURE);
} /* end if */
return (0);
}
else
return (-1);
}
/*-------------------------------------------------------------------------
* Function: term_ref_path_table
*
* Purpose: Terminate the reference path table
*
* Return: Non-negative on success, negative on failure
*
*-------------------------------------------------------------------------
*/
int
term_ref_path_table(void)
{
/* Destroy reference path table, freeing all memory */
if (ref_path_table)
H5SL_destroy(ref_path_table, free_ref_path_info, NULL);
return (0);
}
/*-------------------------------------------------------------------------
* Function: ref_path_table_lookup
*
* Purpose: Looks up a table entry given a path name.
* Used during construction of the table.
*
* Return: Negative on failure, Non-negative on success. The object
* token for the table entry is returned through the token
* parameter if the table entry is found by the given path
* name.
*
*-------------------------------------------------------------------------
*/
int
ref_path_table_lookup(const char *thepath, H5O_token_t *token)
{
H5O_info2_t oi;
if ((thepath == NULL) || (strlen(thepath) == 0))
return -1;
/* Allow lookups on the root group, even though it doesn't have any link info */
if (strcmp(thepath, "/") != 0) {
H5L_info2_t li;
/* Check for external link first, so we don't return the OID of an object in another file */
if (H5Lget_info2(thefile, thepath, &li, H5P_DEFAULT) < 0)
return -1;
/* UD links can't be followed, so they always "dangle" like soft links. */
if (li.type >= H5L_TYPE_UD_MIN)
return -1;
} /* end if */
/* Get the object info now */
/* (returns failure for dangling soft links) */
if (H5Oget_info_by_name3(thefile, thepath, &oi, H5O_INFO_BASIC, H5P_DEFAULT) < 0)
return -1;
/* Return object token through parameter */
memcpy(token, &oi.token, sizeof(H5O_token_t));
return 0;
}
/*-------------------------------------------------------------------------
* Function: ref_path_table_put
*
* Purpose: Enter the 'obj' with 'path' in the table (assumes its not
* already there)
*
* Create an object reference, pte, and store them
* in the table.
*
* NOTE: Takes ownership of the path name string passed in!
*
* Return: Non-negative on success, negative on failure
*
*-------------------------------------------------------------------------
*/
static int
ref_path_table_put(const char *path, const H5O_token_t *token)
{
ref_path_node_t *new_node;
if (ref_path_table && path) {
if ((new_node = (ref_path_node_t *)malloc(sizeof(ref_path_node_t))) == NULL)
return (-1);
memcpy(&new_node->obj_token, token, sizeof(H5O_token_t));
new_node->path = strdup(path);
return (H5SL_insert(ref_path_table, new_node, &(new_node->obj_token)));
}
else
return (-1);
}
/*
* counter used to disambiguate multiple instances of same object.
*/
static int xid = 1;
int
get_next_xid(void)
{
return xid++;
}
/*
* This counter is used to create fake object ID's
* The idea is to set it to the largest possible offset, which
* minimizes the chance of collision with a real object id.
*
*/
static haddr_t fake_xid = HADDR_MAX;
void
get_fake_token(H5O_token_t *token)
{
if (thefile > 0) {
/* TODO: potential for this to be called with non-native connector objects */
if (H5VLnative_addr_to_token(thefile, fake_xid, token) < 0)
*token = H5O_TOKEN_UNDEF;
fake_xid--;
}
else
*token = H5O_TOKEN_UNDEF;
}
/*
* for an object that does not have an object token (e.g., soft link),
* create a table entry with a fake object token as the key.
*
* Assumes 'path' is for an object that is not in the table.
*
*/
void
ref_path_table_gen_fake(const char *path, H5O_token_t *token)
{
/* Generate fake object token for string */
get_fake_token(token);
/* Create ref path table, if it hasn't already been created */
if (ref_path_table == NULL)
init_ref_path_table();
/* Insert "fake" object into table */
ref_path_table_put(path, token);
}
/*-------------------------------------------------------------------------
* Function: lookup_ref_path
*
* Purpose: Lookup the path to the object with the reference 'refbuf'.
*
* Return: Return a path to the object, or NULL if not found.
*
*-------------------------------------------------------------------------
*/
const char *
lookup_ref_path(H5R_ref_t refbuf)
{
H5O_info2_t oinfo;
H5R_type_t ref_type;
hid_t ref_object;
ref_path_node_t *node;
/* Be safer for h5ls */
if (thefile < 0)
return (NULL);
/* Retrieve reference type */
if (H5R_BADTYPE == (ref_type = H5Rget_type(&refbuf)))
return (NULL);
/* Open the referenced object */
switch (ref_type) {
case H5R_OBJECT1:
case H5R_OBJECT2:
if ((ref_object = H5Ropen_object(&refbuf, H5P_DEFAULT, H5P_DEFAULT)) < 0)
return (NULL);
break;
/* Invalid referenced object type */
case H5R_DATASET_REGION1:
case H5R_DATASET_REGION2:
case H5R_ATTR:
case H5R_MAXTYPE:
case H5R_BADTYPE:
default:
return (NULL);
}
/* Retrieve info about the referenced object */
if (H5Oget_info3(ref_object, &oinfo, H5O_INFO_ALL) < 0)
return (NULL);
/* Create ref path table, if it hasn't already been created */
if (ref_path_table == NULL)
init_ref_path_table();
node = (ref_path_node_t *)H5SL_search(ref_path_table, &oinfo.token);
return (node ? node->path : NULL);
}
/*-------------------------------------------------------------------------
* Function: fill_ref_path_table
*
* Purpose: Called by iterator to create references for
* all objects and enter them in the table.
*
* Return: Error status.
*
*-------------------------------------------------------------------------
*/
herr_t
fill_ref_path_table(hid_t fid)
{
/* Set file ID for later queries (XXX: this should be fixed) */
thefile = fid;
/* Defer creating the ref path table until it's needed */
return 0;
}