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Lots of performance improvements & a couple new internal API interfaces. Description: Performance Improvements: - Cached file offset & length sizes in shared file struct, to avoid constantly looking them up in the FCPL. - Generic property improvements: - Added "revision" number to generic property classes to speed up comparisons. - Changed method of storing properties from using a hash-table to the TBBT routines in the library. - Share the propery names between classes and the lists derived from them. - Removed redundant 'def_value' buffer from each property. - Switching code to use a "copy on write" strategy for properties in each list, where the properties in each list are shared with the properties in the class, until a property's value is changed in a list. - Fixed error in layout code which was allocating too many buffers. - Redefined public macros of the form (H5open()/H5check, <variable>) internally to only be (<variable>), avoiding innumerable useless calls to H5open() and H5check_version(). - Reuse already zeroed buffers in H5F_contig_fill instead of constantly re-zeroing them. - Don't write fill values if writing entire dataset. - Use gettimeofday() system call instead of time() system when checking the modification time of a dataset. - Added reference counted string API and use it for tracking the names of objects opening in a file (for the ID->name code). - Removed redundant H5P_get() calls in B-tree routines. - Redefine H5T datatype macros internally to the library, to avoid calling H5check redundantly. - Keep dataspace information for dataset locally instead of reading from disk each time. Added new module to track open objects in a file, to allow this (which will be useful eventually for some FPH5 metadata caching issues). - Remove H5AC_find macro which was inlining metadata cache lookups, and call function instead. - Remove redundant memset() calls from H5G_namei() routine. - Remove redundant checking of object type when locating objects in metadata cache and rely on the address only. - Create default dataset object to use when default dataset creation property list is used to create datasets, bypassing querying for all the property list values. - Use default I/O vector size when performing raw data with the default dataset transfer property list, instead of querying for I/O vector size. - Remove H5P_DEFAULT internally to the library, replacing it with more specific default property list based on the type of property list needed. - Remove redundant memset() calls in object header message (H5O*) routines. - Remove redunant memset() calls in data I/O routines. - Split free-list allocation routines into malloc() and calloc()- like routines, instead of one combined routine. - Remove lots of indirection in H5O*() routines. - Simplify metadata cache entry comparison routine (used when flushing entire cache out). - Only enable metadata cache statistics when H5AC_DEBUG is turned on, instead of always tracking them. - Simplify address comparison macro (H5F_addr_eq). - Remove redundant metadata cache entry protections during dataset creation by protecting the object header once and making all the modifications necessary for the dataset creation before unprotecting it. - Reduce # of "number of element in extent" computations performed by computing and storing the value during dataspace creation. - Simplify checking for group location's file information, when file has not been involving in file-mounting operations. - Use binary encoding for modification time, instead of ASCII. - Hoist H5HL_peek calls (to get information in a local heap) out of loops in many group routine. - Use static variable for iterators of selections, instead of dynamically allocation them each time. - Lookup & insert new entries in one step, avoiding traversing group's B-tree twice. - Fixed memory leak in H5Gget_objname_idx() routine (tangential to performance improvements, but fixed along the way). - Use free-list for reference counted strings. - Don't bother copying object names into cached group entries, since they are re-created when an object is opened. The benchmark I used to measure these results created several thousand small (2K) datasets in a file and wrote out the data for them. This is Elena's "regular.c" benchmark. These changes resulted in approximately ~4.3x speedup of the development branch when compared to the previous code in the development branch and ~1.4x speedup compared to the release branch. Additionally, these changes reduce the total memory used (code and data) by the development branch by ~800KB, bringing the development branch back into the same ballpark as the release branch. I'll send out a more detailed description of the benchmark results as a followup note. New internal API routines: Added "reference counted strings" API for tracking strings that get used by multiple owners without duplicating the strings. Added "ternary search tree" API for text->object mappings. Platforms tested: Tested h5committest {arabica (fortran), eirene (fortran, C++) modi4 (parallel, fortran)} Other platforms/configurations tested? FreeBSD 4.7 (sleipnir) serial & parallel Solaris 2.6 (baldric) serial
280 lines
6.3 KiB
C
280 lines
6.3 KiB
C
/*
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* Copyright © 1998 NCSA
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* All rights reserved.
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*
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* Programmer: Robb Matzke <matzke@llnl.gov>
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* Tuesday, November 24, 1998
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*/
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#include "h5test.h"
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#include "H5Iprivate.h"
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#include "H5Oprivate.h"
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/*
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* This file needs to access private datatypes from the H5G package.
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*/
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#define H5G_PACKAGE
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#include "H5Gpkg.h"
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const char *FILENAME[] = {
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"ohdr",
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NULL
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};
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/*-------------------------------------------------------------------------
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* Function: main
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*
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* Purpose:
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*
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* Return: Success:
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*
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* Failure:
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*
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* Programmer: Robb Matzke
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* Tuesday, November 24, 1998
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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int
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main(void)
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{
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hid_t fapl=-1, file=-1;
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H5F_t *f=NULL;
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char filename[1024];
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H5G_entry_t oh_ent;
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H5O_stab_t stab, ro;
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int i;
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/* Reset library */
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h5_reset();
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fapl = h5_fileaccess();
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h5_fixname(FILENAME[0], fapl, filename, sizeof filename);
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if ((file=H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl))<0)
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goto error;
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if (NULL==(f=H5I_object(file))) {
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H5Eprint(stdout);
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goto error;
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}
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/*
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* Test object header creation
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*/
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TESTING("object header creation");
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HDmemset(&oh_ent,0,sizeof(H5G_entry_t));
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if (H5O_create(f, 64, &oh_ent/*out*/)<0) {
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H5_FAILED();
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H5Eprint(stdout);
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goto error;
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}
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PASSED();
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/* create a new message */
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TESTING("message creation");
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stab.btree_addr = 11111111;
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stab.heap_addr = 22222222;
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if (H5O_modify(&oh_ent, H5O_STAB, H5O_NEW_MESG, 0, 1, &stab)<0) {
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H5_FAILED();
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H5Eprint(stdout);
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goto error;
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}
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if (H5AC_flush(f, NULL, HADDR_UNDEF, TRUE)<0) {
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H5_FAILED();
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H5Eprint(stdout);
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goto error;
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}
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if (NULL==H5O_read(&oh_ent, H5O_STAB, 0, &ro)) {
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H5_FAILED();
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H5Eprint(stdout);
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goto error;
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}
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if (H5F_addr_ne(ro.btree_addr, stab.btree_addr) ||
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H5F_addr_ne(ro.heap_addr, stab.heap_addr)) {
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H5_FAILED();
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HDfprintf(stdout, " got: {%a, %a}\n",
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ro.btree_addr, ro.heap_addr);
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HDfprintf(stdout, " ans: {%a, %a}\n",
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stab.btree_addr, stab.heap_addr);
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goto error;
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}
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PASSED();
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/*
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* Test modification of an existing message.
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*/
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TESTING("message modification");
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stab.btree_addr = 33333333;
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stab.heap_addr = 44444444;
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if (H5O_modify(&oh_ent, H5O_STAB, 0, 0, 1, &stab)<0) {
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H5_FAILED();
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H5Eprint(stdout);
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goto error;
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}
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if (H5AC_flush(f, NULL, HADDR_UNDEF, TRUE)<0) {
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H5_FAILED();
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H5Eprint(stdout);
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goto error;
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}
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if (NULL==H5O_read(&oh_ent, H5O_STAB, 0, &ro)) {
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H5_FAILED();
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H5Eprint(stdout);
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goto error;
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}
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if (H5F_addr_ne(ro.btree_addr, stab.btree_addr) ||
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H5F_addr_ne(ro.heap_addr, stab.heap_addr)) {
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H5_FAILED();
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HDfprintf(stdout, " got: {%a, %a}\n",
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ro.btree_addr, ro.heap_addr);
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HDfprintf(stdout, " ans: {%a, %a}\n",
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stab.btree_addr, stab.heap_addr);
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goto error;
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}
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PASSED();
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/*
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* Test creation of a second message of the same type.
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*/
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TESTING("duplicate message creation");
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stab.btree_addr = 55555555;
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stab.heap_addr = 66666666;
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if (H5O_modify(&oh_ent, H5O_STAB, H5O_NEW_MESG, 0, 1, &stab)<0) {
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H5_FAILED();
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H5Eprint(stdout);
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goto error;
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}
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if (H5AC_flush(f, NULL, HADDR_UNDEF, TRUE)<0) {
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H5_FAILED();
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H5Eprint(stdout);
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goto error;
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}
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if (NULL==H5O_read(&oh_ent, H5O_STAB, 1, &ro)) {
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H5_FAILED();
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H5Eprint(stdout);
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goto error;
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}
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if (H5F_addr_ne(ro.btree_addr, stab.btree_addr) ||
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H5F_addr_ne(ro.heap_addr, stab.heap_addr)) {
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H5_FAILED();
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HDfprintf(stdout, " got: {%a, %a}\n",
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ro.btree_addr, ro.heap_addr);
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HDfprintf(stdout, " ans: {%a, %a}\n",
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stab.btree_addr, stab.heap_addr);
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goto error;
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}
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PASSED();
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/*
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* Test modification of the second message with a symbol table.
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*/
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TESTING("duplicate message modification");
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stab.btree_addr = 77777777;
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stab.heap_addr = 88888888;
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if (H5O_modify(&oh_ent, H5O_STAB, 1, 0, 1, &stab)<0) {
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H5_FAILED();
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H5Eprint(stdout);
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goto error;
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}
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if (H5AC_flush(f, NULL, HADDR_UNDEF, TRUE)<0) {
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H5_FAILED();
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H5Eprint(stdout);
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goto error;
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}
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if (NULL==H5O_read(&oh_ent, H5O_STAB, 1, &ro)) {
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H5_FAILED();
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H5Eprint(stdout);
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goto error;
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}
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if (H5F_addr_ne(ro.btree_addr, stab.btree_addr) ||
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H5F_addr_ne(ro.heap_addr, stab.heap_addr)) {
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H5_FAILED();
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HDfprintf(stdout, " got: {%a, %a}\n",
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ro.btree_addr, ro.heap_addr);
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HDfprintf(stdout, " ans: {%a, %a}\n",
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stab.btree_addr, stab.heap_addr);
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goto error;
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}
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PASSED();
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/*
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* Test creation of a bunch of messages one after another to see
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* what happens when the object header overflows in core.
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*/
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TESTING("object header overflow in memory");
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for (i=0; i<40; i++) {
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stab.btree_addr = (i+1)*1000+1;
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stab.heap_addr = (i+1)*1000+2;
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if (H5O_modify(&oh_ent, H5O_STAB, H5O_NEW_MESG, 0, 1, &stab)<0) {
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H5_FAILED();
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H5Eprint(stdout);
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goto error;
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}
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}
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if (H5AC_flush(f, NULL, HADDR_UNDEF, TRUE)<0) {
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H5_FAILED();
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H5Eprint(stdout);
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goto error;
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}
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PASSED();
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/*
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* Test creation of a bunch of messages one after another to see
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* what happens when the object header overflows on disk.
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*/
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TESTING("object header overflow on disk");
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for (i=0; i<10; i++) {
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stab.btree_addr = (i + 1) * 1000 + 10;
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stab.heap_addr = (i + 1) * 1000 + 20;
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if (H5O_modify(&oh_ent, H5O_STAB, H5O_NEW_MESG, 0, 1, &stab)<0) {
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H5_FAILED();
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H5Eprint(stdout);
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goto error;
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}
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if (H5AC_flush(f, NULL, HADDR_UNDEF, TRUE)<0) {
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H5_FAILED();
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H5Eprint(stdout);
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goto error;
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}
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}
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PASSED();
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/*
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* Delete all symbol table messages.
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*/
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TESTING("message deletion");
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if (H5O_remove(&oh_ent, H5O_STAB, H5O_ALL)<0) {
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H5_FAILED();
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H5Eprint(stdout);
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goto error;
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}
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if (H5O_read(&oh_ent, H5O_STAB, 0, &ro)) {
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H5_FAILED();
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puts(" H5O_read() should have failed but didn't");
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H5Eclear();
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goto error;
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}
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PASSED();
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/* release resources */
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TESTING("object header closing");
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if (H5O_close(&oh_ent)<0) {
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H5_FAILED();
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H5Eprint(stdout);
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goto error;
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}
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if (H5Fclose(file)<0) goto error;
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PASSED();
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puts("All object header tests passed.");
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h5_cleanup(FILENAME, fapl);
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return 0;
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error:
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H5E_BEGIN_TRY {
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H5Fclose(file);
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} H5E_END_TRY;
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return 1;
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}
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