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hdf5/tools/h5repack/CMakeLists.txt
Jonathan Kim e8955b876c [svn-r23407] Purpose: 
HDFFV-8214 - h5repack failed converting small chunked dataset (size < 1K) to contiguous layout.

Description:
  h5repack failed converting small chunked dataset (size < 1K) to contiguous layout.
  The first case was when chunk dim is bigger than the dataset dim (at leat one), h5repack failed with displaying error stacks.
  The other case is when chunk dim is smaller than the dataset dim, h5repack failed to change layout.

    
Tested: 
    jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), emu (solaris-BE),fred (mac64-LE), Windows (32-LE cmake), cmake (jam)
2013-03-20 15:33:33 -05:00

1003 lines
44 KiB
CMake
Raw Blame History

cmake_minimum_required (VERSION 2.8.10)
PROJECT (HDF5_TOOLS_H5REPACK)
#-----------------------------------------------------------------------------
# Setup include Directories
#-----------------------------------------------------------------------------
INCLUDE_DIRECTORIES (${HDF5_TOOLS_SRC_DIR}/lib)
INCLUDE_DIRECTORIES (${HDF5_TEST_SRC_DIR})
# --------------------------------------------------------------------
# Add h5Repack executables
# --------------------------------------------------------------------
SET (REPACK_COMMON_SRCS
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repack_copy.c
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repack_filters.c
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repack_opttable.c
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repack_parse.c
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repack_refs.c
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repack_verify.c
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repack.c
)
ADD_EXECUTABLE (h5repack ${REPACK_COMMON_SRCS} ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repack_main.c)
TARGET_NAMING (h5repack ${LIB_TYPE})
TARGET_LINK_LIBRARIES (h5repack ${HDF5_TOOLS_LIB_TARGET} ${HDF5_LIB_TARGET})
SET_TARGET_PROPERTIES (h5repack PROPERTIES FOLDER tools)
SET (H5_DEP_EXECUTABLES h5repack)
##############################################################################
##############################################################################
### T E S T I N G ###
##############################################################################
##############################################################################
IF (BUILD_TESTING)
# --------------------------------------------------------------------
# Add h5Repack test executables
# --------------------------------------------------------------------
ADD_EXECUTABLE (testh5repack_detect_szip ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testh5repack_detect_szip.c)
TARGET_NAMING (testh5repack_detect_szip ${LIB_TYPE})
TARGET_LINK_LIBRARIES (testh5repack_detect_szip ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET})
SET_TARGET_PROPERTIES (testh5repack_detect_szip PROPERTIES FOLDER tools)
ADD_EXECUTABLE (h5repacktest ${REPACK_COMMON_SRCS} ${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/h5repacktst.c)
TARGET_NAMING (h5repacktest ${LIB_TYPE})
TARGET_LINK_LIBRARIES (h5repacktest ${HDF5_TOOLS_LIB_TARGET} ${HDF5_TEST_LIB_TARGET})
SET_TARGET_PROPERTIES (h5repacktest PROPERTIES FOLDER tools)
IF (HDF5_TEST_VFD)
SET (VFD_LIST
sec2
stdio
core
split
multi
family
)
IF (DIRECT_VFD)
SET (VFD_LIST ${VFD_LIST} direct)
ENDIF (DIRECT_VFD)
MACRO (ADD_VFD_TEST vfdname resultcode)
ADD_TEST (
NAME H5REPACK-VFD-${vfdname}-h5repacktest
COMMAND "${CMAKE_COMMAND}"
-D "TEST_PROGRAM=$<TARGET_FILE:h5repacktest>"
-D "TEST_ARGS:STRING="
-D "TEST_VFD:STRING=${vfdname}"
-D "TEST_EXPECT=${resultcode}"
-D "TEST_OUTPUT=h5repacktest"
-D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
-P "${HDF5_RESOURCES_DIR}/vfdTest.cmake"
)
IF (NOT "${last_test}" STREQUAL "")
SET_TESTS_PROPERTIES (H5REPACK-VFD-${vfdname}-h5repacktest PROPERTIES DEPENDS ${last_test})
ENDIF (NOT "${last_test}" STREQUAL "")
SET (last_test "H5REPACK-VFD-${vfdname}-h5repacktest")
ENDMACRO (ADD_VFD_TEST)
ENDIF (HDF5_TEST_VFD)
# --------------------------------------------------------------------
# Copy all the HDF5 files from the source directory into the test directory
# --------------------------------------------------------------------
SET (LIST_HDF5_TEST_FILES
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_attr.h5
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_attr_refs.h5
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_deflate.h5
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_early.h5
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_ext.h5
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_fill.h5
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_filters.h5
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_fletcher.h5
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_hlink.h5
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layout.h5
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layouto.h5
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layout2.h5
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_layout3.h5
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_named_dtypes.h5
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_nbit.h5
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_objs.h5
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_refs.h5
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_shuffle.h5
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_soffset.h5
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_szip.h5
# h5diff/testfile
${HDF5_TOOLS_H5DIFF_SOURCE_DIR}/testfiles/h5diff_attr1.h5
# tools/testfiles
${HDF5_TOOLS_SRC_DIR}/testfiles/tfamily00000.h5
${HDF5_TOOLS_SRC_DIR}/testfiles/tfamily00001.h5
${HDF5_TOOLS_SRC_DIR}/testfiles/tfamily00002.h5
${HDF5_TOOLS_SRC_DIR}/testfiles/tfamily00003.h5
${HDF5_TOOLS_SRC_DIR}/testfiles/tfamily00004.h5
${HDF5_TOOLS_SRC_DIR}/testfiles/tfamily00005.h5
${HDF5_TOOLS_SRC_DIR}/testfiles/tfamily00006.h5
${HDF5_TOOLS_SRC_DIR}/testfiles/tfamily00007.h5
${HDF5_TOOLS_SRC_DIR}/testfiles/tfamily00008.h5
${HDF5_TOOLS_SRC_DIR}/testfiles/tfamily00009.h5
${HDF5_TOOLS_SRC_DIR}/testfiles/tfamily00010.h5
)
SET (LIST_OTHER_TEST_FILES
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack_ext.bin
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/ublock.bin
${HDF5_TOOLS_H5REPACK_SOURCE_DIR}/testfiles/h5repack.info
# tools/testfiles
${HDF5_TOOLS_SRC_DIR}/testfiles/h5repack_filters.h5.ddl
)
FOREACH (h5_file ${LIST_HDF5_TEST_FILES} ${LIST_OTHER_TEST_FILES})
GET_FILENAME_COMPONENT(fname "${h5_file}" NAME)
SET (dest "${PROJECT_BINARY_DIR}/testfiles/${fname}")
#MESSAGE (STATUS " Copying ${h5_file}")
ADD_CUSTOM_COMMAND (
TARGET h5repack
POST_BUILD
COMMAND ${CMAKE_COMMAND}
ARGS -E copy_if_different ${h5_file} ${dest}
)
ENDFOREACH (h5_file ${LIST_HDF5_TEST_FILES} ${LIST_OTHER_TEST_FILES})
##############################################################################
##############################################################################
### T H E T E S T S M A C R O S ###
##############################################################################
##############################################################################
MACRO (ADD_H5_TEST_OLD testname testtype testfile)
IF (${testtype} STREQUAL "SKIP")
IF (NOT HDF5_ENABLE_USING_MEMCHECKER)
ADD_TEST (
NAME H5REPACK_OLD-${testname}-SKIPPED
COMMAND ${CMAKE_COMMAND} -E echo "SKIP ${ARGN} -i ${PROJECT_BINARY_DIR}/testfiles/${testfile} -o ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile}"
)
ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
ELSE (${testtype} STREQUAL "SKIP")
ADD_TEST (
NAME H5REPACK_OLD-${testname}
COMMAND $<TARGET_FILE:h5repack> ${ARGN} -i ${PROJECT_BINARY_DIR}/testfiles/${testfile} -o ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile}
)
IF (NOT "${last_test}" STREQUAL "")
SET_TESTS_PROPERTIES (H5REPACK_OLD-${testname} PROPERTIES DEPENDS ${last_test})
ENDIF (NOT "${last_test}" STREQUAL "")
ADD_TEST (
NAME H5REPACK_OLD-${testname}_DFF
COMMAND $<TARGET_FILE:h5diff> ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile}
)
SET_TESTS_PROPERTIES (H5REPACK_OLD-${testname}_DFF PROPERTIES DEPENDS H5REPACK_OLD-${testname})
ENDIF (${testtype} STREQUAL "SKIP")
ENDMACRO (ADD_H5_TEST_OLD)
MACRO (ADD_H5_TEST testname testtype testfile)
IF (${testtype} STREQUAL "SKIP")
IF (NOT HDF5_ENABLE_USING_MEMCHECKER)
ADD_TEST (
NAME H5REPACK-${testname}-SKIPPED
COMMAND ${CMAKE_COMMAND} -E echo "SKIP ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile}"
)
ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
ELSE (${testtype} STREQUAL "SKIP")
ADD_TEST (
NAME H5REPACK-${testname}
COMMAND $<TARGET_FILE:h5repack> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile}
)
IF (NOT "${last_test}" STREQUAL "")
SET_TESTS_PROPERTIES (H5REPACK-${testname} PROPERTIES DEPENDS ${last_test})
ENDIF (NOT "${last_test}" STREQUAL "")
ADD_TEST (
NAME H5REPACK-${testname}_DFF
COMMAND $<TARGET_FILE:h5diff> ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile}
)
SET_TESTS_PROPERTIES (H5REPACK-${testname}_DFF PROPERTIES DEPENDS H5REPACK-${testname})
ENDIF (${testtype} STREQUAL "SKIP")
ENDMACRO (ADD_H5_TEST)
MACRO (ADD_H5_CMP_TEST testname testfilter testtype resultcode resultfile)
IF (${testtype} STREQUAL "SKIP")
IF (NOT HDF5_ENABLE_USING_MEMCHECKER)
ADD_TEST (
NAME H5REPACK_CMP-${testname}-SKIPPED
COMMAND ${CMAKE_COMMAND} -E echo "SKIP ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${resultfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${resultfile}"
)
ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
ELSE (${testtype} STREQUAL "SKIP")
# If using memchecker add tests without using scripts
IF (HDF5_ENABLE_USING_MEMCHECKER)
ADD_TEST (NAME H5REPACK_CMP-${testname} COMMAND $<TARGET_FILE:h5repack> ${ARGN} testfiles/${resultfile} testfiles/out-${testname}.${resultfile})
ELSE (HDF5_ENABLE_USING_MEMCHECKER)
ADD_TEST (
NAME H5REPACK_CMP-${testname}
COMMAND "${CMAKE_COMMAND}"
-D "TEST_PROGRAM=$<TARGET_FILE:h5repack>"
-D "TEST_ARGS:STRING=${ARGN};testfiles/${resultfile};testfiles/out-${testname}.${resultfile}"
-D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
-D "TEST_OUTPUT=./testfiles/${resultfile}-${testname}.out"
-D "TEST_EXPECT=${resultcode}"
-D "TEST_FILTER:STRING=${testfilter}"
-D "TEST_REFERENCE=testfiles/${resultfile}.ddl"
-P "${HDF5_RESOURCES_DIR}/runTest.cmake"
)
ENDIF (HDF5_ENABLE_USING_MEMCHECKER)
IF (NOT "${last_test}" STREQUAL "")
SET_TESTS_PROPERTIES (H5REPACK_CMP-${testname} PROPERTIES DEPENDS ${last_test})
ENDIF (NOT "${last_test}" STREQUAL "")
ENDIF (${testtype} STREQUAL "SKIP")
ENDMACRO (ADD_H5_CMP_TEST)
MACRO (ADD_H5_VERIFY_TEST testname testtype resultcode testfile testdset testfilter)
IF (${testtype} STREQUAL "SKIP")
IF (NOT HDF5_ENABLE_USING_MEMCHECKER)
ADD_TEST (
NAME H5REPACK_VERIFY_LAYOUT-${testname}-SKIPPED
COMMAND ${CMAKE_COMMAND} -E echo "SKIP -d ${testdset} -pH ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${resultfile}"
)
ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
ELSE (${testtype} STREQUAL "SKIP")
IF (NOT HDF5_ENABLE_USING_MEMCHECKER)
ADD_TEST (
NAME H5REPACK_VERIFY_LAYOUT-${testname}
COMMAND $<TARGET_FILE:h5repack> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile}
)
IF (NOT "${last_test}" STREQUAL "")
SET_TESTS_PROPERTIES (H5REPACK_VERIFY_LAYOUT-${testname} PROPERTIES DEPENDS ${last_test})
ENDIF (NOT "${last_test}" STREQUAL "")
ADD_TEST (
NAME H5REPACK_VERIFY_LAYOUT-${testname}_DFF
COMMAND $<TARGET_FILE:h5diff> ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}.${testfile}
)
SET_TESTS_PROPERTIES (H5REPACK_VERIFY_LAYOUT-${testname}_DFF PROPERTIES DEPENDS H5REPACK_VERIFY_LAYOUT-${testname})
IF (${resultcode} STREQUAL "0")
ADD_TEST (
NAME H5REPACK_VERIFY_LAYOUT-${testname}_DMP
COMMAND "${CMAKE_COMMAND}"
-D "TEST_PROGRAM=$<TARGET_FILE:h5dump>"
-D "TEST_ARGS:STRING=-d;${testdset};-pH;testfiles/out-${testname}.${testfile}"
-D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
-D "TEST_OUTPUT=./testfiles/${testfile}-${testname}-v.out"
-D "TEST_EXPECT=${resultcode}"
-D "TEST_FILTER:STRING=${testfilter}"
-D "TEST_REFERENCE=${testfilter}"
-P "${HDF5_RESOURCES_DIR}/grepTest.cmake"
)
SET_TESTS_PROPERTIES (H5REPACK_VERIFY_LAYOUT-${testname}_DMP PROPERTIES DEPENDS H5REPACK_VERIFY_LAYOUT-${testname}_DFF)
ELSE (${resultcode} STREQUAL "0")
IF (${testfilter} STREQUAL "CHUNKED")
SET (nottestfilter "(CONTIGUOUS|COMPACT)")
ENDIF (${testfilter} STREQUAL "CHUNKED")
IF (${testfilter} STREQUAL "CONTIGUOUS")
SET (nottestfilter "(CHUNK|COMPACT)")
ENDIF (${testfilter} STREQUAL "CONTIGUOUS")
IF (${testfilter} STREQUAL "COMPACT")
SET (nottestfilter "(CONTIGUOUS|CHUNK)")
ENDIF (${testfilter} STREQUAL "COMPACT")
ADD_TEST (
NAME H5REPACK_VERIFY_LAYOUT-${testname}_DMP
COMMAND "${CMAKE_COMMAND}"
-D "TEST_PROGRAM=$<TARGET_FILE:h5dump>"
-D "TEST_ARGS:STRING=-pH;testfiles/out-${testname}.${testfile}"
-D "TEST_FOLDER=${PROJECT_BINARY_DIR}"
-D "TEST_OUTPUT=./testfiles/${testfile}-${testname}-v.out"
-D "TEST_EXPECT=${resultcode}"
-D "TEST_FILTER:STRING=${nottestfilter}"
-D "TEST_REFERENCE=${testfilter}"
-P "${HDF5_RESOURCES_DIR}/grepTest.cmake"
)
SET_TESTS_PROPERTIES (H5REPACK_VERIFY_LAYOUT-${testname}_DMP PROPERTIES DEPENDS H5REPACK_VERIFY_LAYOUT-${testname}_DFF)
ENDIF (${resultcode} STREQUAL "0")
ENDIF (NOT HDF5_ENABLE_USING_MEMCHECKER)
ENDIF (${testtype} STREQUAL "SKIP")
ENDMACRO (ADD_H5_VERIFY_TEST)
MACRO (ADD_H5_TEST_META testname testfile)
ADD_TEST (
NAME H5REPACK_META-${testname}_N
COMMAND $<TARGET_FILE:h5repack> ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}_N.${testname}.h5
)
IF (NOT "${last_test}" STREQUAL "")
SET_TESTS_PROPERTIES (H5REPACK_META-${testname}_N PROPERTIES DEPENDS ${last_test})
ENDIF (NOT "${last_test}" STREQUAL "")
ADD_TEST (
NAME H5REPACK_META-${testname}_M
COMMAND $<TARGET_FILE:h5repack> ${ARGN} ${PROJECT_BINARY_DIR}/testfiles/${testfile} ${PROJECT_BINARY_DIR}/testfiles/out-${testname}_M.${testname}.h5
)
SET_TESTS_PROPERTIES (H5REPACK_META-${testname}_M PROPERTIES DEPENDS H5REPACK_META-${testname}_N)
ADD_TEST (NAME H5REPACK_META-${testname} COMMAND ${CMAKE_COMMAND} -E compare_files ${PROJECT_BINARY_DIR}/testfiles/out-${testname}_N.${testname}.h5 ${PROJECT_BINARY_DIR}/testfiles/out-${testname}_M.${testname}.h5)
SET_TESTS_PROPERTIES (H5REPACK_META-${testname} PROPERTIES WILL_FAIL "true")
SET_TESTS_PROPERTIES (H5REPACK_META-${testname} PROPERTIES DEPENDS H5REPACK_META-${testname}_M)
ENDMACRO (ADD_H5_TEST_META)
##############################################################################
##############################################################################
### T H E T E S T S ###
##############################################################################
##############################################################################
# --------------------------------------------------------------------
# test file names
# --------------------------------------------------------------------
SET (INFO_FILE testfiles/h5repack.info)
SET (FILE0 h5repack_fill.h5)
SET (FILE1 h5repack_objs.h5)
SET (FILE2 h5repack_attr.h5)
SET (FILE3 h5repack_hlink.h5)
SET (FILE4 h5repack_layout.h5)
SET (FILE5 h5repack_early.h5)
SET (FILE7 h5repack_szip.h5)
SET (FILE8 h5repack_deflate.h5)
SET (FILE9 h5repack_shuffle.h5)
SET (FILE10 h5repack_fletcher.h5)
SET (FILE11 h5repack_filters.h5)
SET (FILE12 h5repack_nbit.h5)
SET (FILE13 h5repack_soffset.h5)
SET (FILE14 h5repack_layouto.h5 ) # A file with an older version of the layout message (copy of test/tlayouto.h5)
SET (FILE15 h5repack_named_dtypes.h5)
SET (FILE16 tfamily%05d.h5) # located in common testfiles folder
SET (FILE18 h5repack_layout2.h5)
SET (FILE_REF h5repack_refs.h5)
SET (FILE_ATTR_REF h5repack_attr_refs.h5)
# Remove any output file left over from previous test run
ADD_TEST (
NAME H5REPACK-clearall-objects
COMMAND ${CMAKE_COMMAND}
-E remove
./testfiles/h5repack_filters.h5-gzip_verbose_filters.out
./testfiles/h5repack_filters.h5-gzip_verbose_filters.out.err
./testfiles/h5repack_layout.h5-chunk_18x13-v.out
./testfiles/h5repack_layout.h5-chunk_18x13-v.out.err
./testfiles/h5repack_layout.h5-chunk_20x10-v.out
./testfiles/h5repack_layout.h5-chunk_20x10-v.out.err
./testfiles/h5repack_layout.h5-chunk_compa-v.out
./testfiles/h5repack_layout.h5-chunk_compa-v.out.err
./testfiles/h5repack_layout.h5-chunk_conti-v.out
./testfiles/h5repack_layout.h5-chunk_conti-v.out.err
./testfiles/h5repack_layout.h5-compa-v.out
./testfiles/h5repack_layout.h5-compa-v.out.err
./testfiles/h5repack_layout.h5-conti-v.out
./testfiles/h5repack_layout.h5-conti-v.out.err
./testfiles/h5repack_layout.h5-dset2_chunk_20x10-v.out
./testfiles/h5repack_layout.h5-dset2_chunk_20x10-v.out.err
./testfiles/h5repack_layout.h5-dset2_compa-v.out
./testfiles/h5repack_layout.h5-dset2_compa-v.out.err
./testfiles/h5repack_layout.h5-dset2_conti-v.out
./testfiles/h5repack_layout.h5-dset2_conti-v.out.err
./testfiles/h5repack_layout.h5-dset_compa_chunk-v.out
./testfiles/h5repack_layout.h5-dset_compa_chunk-v.out.err
./testfiles/h5repack_layout.h5-dset_compa_compa-v.out
./testfiles/h5repack_layout.h5-dset_compa_compa-v.out.err
./testfiles/h5repack_layout.h5-dset_compa_conti-v.out
./testfiles/h5repack_layout.h5-dset_compa_conti-v.out.err
./testfiles/h5repack_layout.h5-dset_conti_chunk-v.out
./testfiles/h5repack_layout.h5-dset_conti_chunk-v.out.err
./testfiles/h5repack_layout.h5-dset_conti_compa-v.out
./testfiles/h5repack_layout.h5-dset_conti_compa-v.out.err
./testfiles/h5repack_layout.h5-dset_conti_conti-v.out
./testfiles/h5repack_layout.h5-dset_conti_conti-v.out.err
./testfiles/h5repack_layout.h5-layout_long_switches-v.out
./testfiles/h5repack_layout.h5-layout_long_switches-v.out.err
./testfiles/h5repack_layout.h5-layout_short_switches-v.out
./testfiles/h5repack_layout.h5-layout_short_switches-v.out.err
./testfiles/h5repack_layout2.h5-contig_small_compa-v.out
./testfiles/h5repack_layout2.h5-contig_small_compa-v.out.err
./testfiles/h5repack_layout2.h5-contig_small_fixed_compa-v.out
./testfiles/h5repack_layout2.h5-contig_small_fixed_compa-v.out.err
./testfiles/h5repack_layout3.h5-chunk2chunk-v.out
./testfiles/h5repack_layout3.h5-chunk2chunk-v.out.err
./testfiles/h5repack_layout3.h5-chunk2compa-v.out
./testfiles/h5repack_layout3.h5-chunk2compa-v.out.err
./testfiles/h5repack_layout3.h5-chunk2conti-v.out
./testfiles/h5repack_layout3.h5-chunk2conti-v.out.err
./testfiles/h5repack_layout3.h5-error1-v.out
./testfiles/h5repack_layout3.h5-error1-v.out.err
./testfiles/h5repack_layout3.h5-error2-v.out
./testfiles/h5repack_layout3.h5-error2-v.out.err
./testfiles/h5repack_layout3.h5-error3-v.out
./testfiles/h5repack_layout3.h5-error3-v.out.err
./testfiles/out-family.tfamily%05d.h5
./testfiles/out-HDFFV-7840.h5diff_attr1.h5
./testfiles/out-attr.h5repack_attr.h5
./testfiles/out-native_attr.h5repack_attr.h5
./testfiles/out-HDFFV-5932.h5repack_attr_refs.h5
./testfiles/out-deflate_copy.h5repack_deflate.h5
./testfiles/out-deflate_remove.h5repack_deflate.h5
./testfiles/out-early.h5repack_early.h5
./testfiles/out-fill.h5repack_fill.h5
./testfiles/out-native_fill.h5repack_fill.h5
./testfiles/out-gzip_verbose_filters.h5repack_filters.h5
./testfiles/out-fletcher_copy.h5repack_fletcher.h5
./testfiles/out-fletcher_remove.h5repack_fletcher.h5
./testfiles/out-hlink.h5repack_hlink.h5
./testfiles/out-chunk_18x13.h5repack_layout.h5
./testfiles/out-chunk_20x10.h5repack_layout.h5
./testfiles/out-chunk_compa.h5repack_layout.h5
./testfiles/out-chunk_conti.h5repack_layout.h5
./testfiles/out-compa.h5repack_layout.h5
./testfiles/out-conti.h5repack_layout.h5
./testfiles/out-deflate_file.h5repack_layout.h5
./testfiles/out-deflate_limit.h5repack_layout.h5
./testfiles/out-dset2_chunk_20x10.h5repack_layout.h5
./testfiles/out-dset2_compa.h5repack_layout.h5
./testfiles/out-dset2_conti.h5repack_layout.h5
./testfiles/out-dset_compa_chunk.h5repack_layout.h5
./testfiles/out-dset_compa_compa.h5repack_layout.h5
./testfiles/out-dset_compa_conti.h5repack_layout.h5
./testfiles/out-dset_conti_chunk.h5repack_layout.h5
./testfiles/out-dset_conti_compa.h5repack_layout.h5
./testfiles/out-dset_conti_conti.h5repack_layout.h5
./testfiles/out-fletcher_all.h5repack_layout.h5
./testfiles/out-fletcher_individual.h5repack_layout.h5
./testfiles/out-global_filters.h5repack_layout.h5
./testfiles/out-gzip_all.h5repack_layout.h5
./testfiles/out-gzip_individual.h5repack_layout.h5
./testfiles/out-layout.h5repack_layout.h5
./testfiles/out-layout_long_switches.h5repack_layout.h5
./testfiles/out-layout_short_switches.h5repack_layout.h5
./testfiles/out-old_style_layout_short_switches.h5repack_layout.h5
./testfiles/out-shuffle_all.h5repack_layout.h5
./testfiles/out-shuffle_individual.h5repack_layout.h5
./testfiles/out-upgrade_layout.h5repack_layouto.h5
./testfiles/out-contig_small_compa.h5repack_layout2.h5
./testfiles/out-contig_small_fixed_compa.h5repack_layout2.h5
./testfiles/out-chunk2chunk.h5repack_layout3.h5
./testfiles/out-chunk2compa.h5repack_layout3.h5
./testfiles/out-chunk2conti.h5repack_layout3.h5
./testfiles/out-error1.h5repack_layout3.h5
./testfiles/out-error2.h5repack_layout3.h5
./testfiles/out-error3.h5repack_layout3.h5
./testfiles/out-error4.h5repack_layout3.h5
./testfiles/out-committed_dt.h5repack_named_dtypes.h5
./testfiles/out-nbit_add.h5repack_nbit.h5
./testfiles/out-nbit_copy.h5repack_nbit.h5
./testfiles/out-nbit_remove.h5repack_nbit.h5
./testfiles/out-add_alignment.h5repack_objs.h5
./testfiles/out-add_userblock.h5repack_objs.h5
./testfiles/out-objs.h5repack_objs.h5
./testfiles/out-gt_mallocsize.h5repack_objs.h5
./testfiles/out-bug1814.h5repack_refs.h5
./testfiles/out-shuffle_copy.h5repack_shuffle.h5
./testfiles/out-shuffle_remove.h5repack_shuffle.h5
./testfiles/out-scale_add.h5repack_soffset.h5
./testfiles/out-scale_copy.h5repack_soffset.h5
./testfiles/out-scale_remove.h5repack_soffset.h5
./testfiles/out-meta_short_M.meta_short.h5
./testfiles/out-meta_short_N.meta_short.h5
./testfiles/out-meta_long_M.meta_long.h5
./testfiles/out-meta_long_N.meta_long.h5
# from the h5repacktst
h5repack_attr.h5
h5repack_attr_out.h5
h5repack_attr_refs.h5
h5repack_big.h5
h5repack_deflate.h5
h5repack_deflate_out.h5
h5repack_early2.h5
h5repack_early.h5
h5repack_early_out.h5
h5repack_ext.h5
h5repack_ext_out.h5
h5repack_fill.h5
h5repack_fill_out.h5
h5repack_filters.h5
h5repack_filters_out.h5
h5repack_fletcher.h5
h5repack_fletcher_out.h5
h5repack_hlink.h5
h5repack_hlink_out.h5
h5repack_layout.h5
h5repack_layout_out.h5
h5repack_layout2.h5
h5repack_layout3.h5
h5repack_named_dtypes.h5
h5repack_named_dtypes_out.h5
h5repack_nbit.h5
h5repack_nbit_out.h5
h5repack_objs.h5
h5repack_objs_out.h5
h5repack_refs.h5
h5repack_shuffle.h5
h5repack_shuffle_out.h5
h5repack_soffset.h5
h5repack_soffset_out.h5
h5repack_szip.h5
h5repack_szip_out.h5
h5repack_ub.h5
h5repack_ub_out.h5
h5repack_ext.bin
ublock.bin
)
IF (NOT "${last_test}" STREQUAL "")
SET_TESTS_PROPERTIES (H5REPACK-clearall-objects PROPERTIES DEPENDS ${last_test})
ENDIF (NOT "${last_test}" STREQUAL "")
ADD_TEST (NAME H5REPACK-testh5repack_detect_szip COMMAND $<TARGET_FILE:testh5repack_detect_szip>)
IF (HDF5_ENABLE_SZIP_SUPPORT)
IF (HDF5_ENABLE_SZIP_ENCODING)
SET (passRegex "yes")
SET_TESTS_PROPERTIES (H5REPACK-testh5repack_detect_szip PROPERTIES PASS_REGULAR_EXPRESSION "yes")
ELSE (HDF5_ENABLE_SZIP_ENCODING)
SET (passRegex "no")
SET_TESTS_PROPERTIES (H5REPACK-testh5repack_detect_szip PROPERTIES PASS_REGULAR_EXPRESSION "no")
ENDIF (HDF5_ENABLE_SZIP_ENCODING)
ELSE (HDF5_ENABLE_SZIP_SUPPORT)
SET (passRegex "no")
SET_TESTS_PROPERTIES (H5REPACK-testh5repack_detect_szip PROPERTIES PASS_REGULAR_EXPRESSION "no")
ENDIF (HDF5_ENABLE_SZIP_SUPPORT)
SET_TESTS_PROPERTIES (H5REPACK-testh5repack_detect_szip PROPERTIES DEPENDS H5REPACK-clearall-objects)
ADD_TEST (NAME H5REPACK-h5repacktest COMMAND $<TARGET_FILE:h5repacktest>)
SET_TESTS_PROPERTIES (H5REPACK-h5repacktest PROPERTIES DEPENDS H5REPACK-testh5repack_detect_szip)
SET (last_test "H5REPACK-h5repacktest")
#
# The tests
# We use the files generated by h5repacktst
# Each run generates "<file>.out.h5" and the tool h5diff is used to
# compare the input and output files
#
# the tests are the same as the program h5repacktst, but run from the CLI
#
# See which filters are usable (and skip tests for filters we
# don't have). Do this by searching H5pubconf.h to see which
# filters are defined.
# detect whether the encoder is present.
SET (USE_FILTER_SZIP_ENCODER "no")
IF (HDF5_ENABLE_SZIP_ENCODING)
SET (USE_FILTER_SZIP_ENCODER ${testh5repack_detect_szip})
ENDIF (HDF5_ENABLE_SZIP_ENCODING)
IF (H5_HAVE_FILTER_DEFLATE)
SET (USE_FILTER_DEFLATE "true")
ENDIF (H5_HAVE_FILTER_DEFLATE)
IF (H5_HAVE_FILTER_SZIP)
SET (USE_FILTER_SZIP "true")
ENDIF (H5_HAVE_FILTER_SZIP)
IF (H5_HAVE_FILTER_SHUFFLE)
SET (USE_FILTER_SHUFFLE "true")
ENDIF (H5_HAVE_FILTER_SHUFFLE)
IF (H5_HAVE_FILTER_FLETCHER32)
SET (USE_FILTER_FLETCHER32 "true")
ENDIF (H5_HAVE_FILTER_FLETCHER32)
IF (H5_HAVE_FILTER_NBIT)
SET (USE_FILTER_NBIT "true")
ENDIF (H5_HAVE_FILTER_NBIT)
IF (H5_HAVE_FILTER_SCALEOFFSET)
SET (USE_FILTER_SCALEOFFSET "true")
ENDIF (H5_HAVE_FILTER_SCALEOFFSET)
# copy files (these files have no filters)
ADD_H5_TEST (fill "TEST" ${FILE0})
ADD_H5_TEST (objs "TEST" ${FILE1})
ADD_H5_TEST (attr "TEST" ${FILE2})
ADD_H5_TEST (hlink "TEST" ${FILE3})
ADD_H5_TEST (layout "TEST" ${FILE4})
ADD_H5_TEST (early "TEST" ${FILE5})
# use $FILE4 to write some filters (this file has no filters)
# gzip with individual object
SET (arg ${FILE4} -f dset1:GZIP=1 -l dset1:CHUNK=20x10)
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_DEFLATE)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_DEFLATE)
ADD_H5_TEST (gzip_individual ${TESTTYPE} ${arg})
# gzip for all
SET (arg ${FILE4} -f GZIP=1)
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_DEFLATE)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_DEFLATE)
ADD_H5_TEST (gzip_all ${TESTTYPE} ${arg})
# szip with individual object
SET (arg ${FILE4} -f dset2:SZIP=8,EC -l dset2:CHUNK=20x10)
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP)
ADD_H5_TEST (szip_individual ${TESTTYPE} ${arg})
# szip for all
SET (arg ${FILE4} -f SZIP=8,NN)
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP)
ADD_H5_TEST (szip_all ${TESTTYPE} ${arg})
# shuffle with individual object
SET (arg ${FILE4} -f dset2:SHUF -l dset2:CHUNK=20x10)
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_SHUFFLE)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_SHUFFLE)
ADD_H5_TEST (shuffle_individual ${TESTTYPE} ${arg})
# shuffle for all
SET (arg ${FILE4} -f SHUF)
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_SHUFFLE)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_SHUFFLE)
ADD_H5_TEST (shuffle_all ${TESTTYPE} ${arg})
# fletcher32 with individual object
SET (arg ${FILE4} -f dset2:FLET -l dset2:CHUNK=20x10)
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_FLETCHER32)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_FLETCHER32)
ADD_H5_TEST (fletcher_individual ${TESTTYPE} ${arg})
# fletcher32 for all
SET (arg ${FILE4} -f FLET)
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_FLETCHER32)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_FLETCHER32)
ADD_H5_TEST (fletcher_all ${TESTTYPE} ${arg})
# all filters
SET (arg ${FILE4} -f dset2:SHUF -f dset2:FLET -f dset2:SZIP=8,NN -f dset2:GZIP=1 -l dset2:CHUNK=20x10)
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP OR NOT USE_FILTER_SHUFFLE OR NOT USE_FILTER_FLETCHER32 OR NOT USE_FILTER_DEFLATE)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP OR NOT USE_FILTER_SHUFFLE OR NOT USE_FILTER_FLETCHER32 OR NOT USE_FILTER_DEFLATE)
ADD_H5_TEST (all_filters ${TESTTYPE} ${arg})
# verbose gzip with individual object
SET (arg ${FILE11} -v -f /dset_deflate:GZIP=9)
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_DEFLATE)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_DEFLATE)
ADD_H5_CMP_TEST (gzip_verbose_filters "O?...ing file[^\n]+\n" ${TESTTYPE} 0 ${arg})
###########################################################
# the following tests assume the input files have filters
###########################################################
# szip copy
SET (arg ${FILE7})
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP)
ADD_H5_TEST (szip_copy ${TESTTYPE} ${arg})
# szip remove
SET (arg ${FILE7} --filter=dset_szip:NONE)
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP)
ADD_H5_TEST (szip_remove ${TESTTYPE} ${arg})
# deflate copy
SET (arg ${FILE8})
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_DEFLATE)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_DEFLATE)
ADD_H5_TEST (deflate_copy ${TESTTYPE} ${arg})
# deflate remove
SET (arg ${FILE8} -f dset_deflate:NONE)
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_DEFLATE)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_DEFLATE)
ADD_H5_TEST (deflate_remove ${TESTTYPE} ${arg})
# shuffle copy
SET (arg ${FILE9})
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_SHUFFLE)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_SHUFFLE)
ADD_H5_TEST (shuffle_copy ${TESTTYPE} ${arg})
# shuffle remove
SET (arg ${FILE9} -f dset_shuffle:NONE)
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_SHUFFLE)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_SHUFFLE)
ADD_H5_TEST (shuffle_remove ${TESTTYPE} ${arg})
# fletcher32 copy
SET (arg ${FILE10})
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_FLETCHER32)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_FLETCHER32)
ADD_H5_TEST (fletcher_copy ${TESTTYPE} ${arg})
# fletcher32 remove
SET (arg ${FILE10} -f dset_fletcher32:NONE)
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_FLETCHER32)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_FLETCHER32)
ADD_H5_TEST (fletcher_remove ${TESTTYPE} ${arg})
# nbit copy
SET (arg ${FILE12})
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_NBIT)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_NBIT)
ADD_H5_TEST (nbit_copy ${TESTTYPE} ${arg})
# nbit remove
SET (arg ${FILE12} -f dset_nbit:NONE)
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_NBIT)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_NBIT)
ADD_H5_TEST (nbit_remove ${TESTTYPE} ${arg})
# nbit add
SET (arg ${FILE12} -f dset_int31:NBIT)
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_NBIT)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_NBIT)
ADD_H5_TEST (nbit_add ${TESTTYPE} ${arg})
# scaleoffset copy
SET (arg ${FILE13})
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_SCALEOFFSET)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_SCALEOFFSET)
ADD_H5_TEST (scale_copy ${TESTTYPE} ${arg})
# scaleoffset add
SET (arg ${FILE13} -f dset_none:SOFF=31,IN)
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_SCALEOFFSET)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_SCALEOFFSET)
ADD_H5_TEST (scale_add ${TESTTYPE} ${arg})
# scaleoffset remove
SET (arg ${FILE13} -f dset_scaleoffset:NONE)
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_SCALEOFFSET)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_SCALEOFFSET)
ADD_H5_TEST (scale_remove ${TESTTYPE} ${arg})
# remove all filters
SET (arg ${FILE11} -f NONE)
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_FLETCHER32 OR NOT USE_FILTER_DEFLATE OR NOT USE_FILTER_SZIP OR NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SHUFFLE OR NOT USE_FILTER_NBIT OR NOT USE_FILTER_SCALEOFFSET)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_FLETCHER32 OR NOT USE_FILTER_DEFLATE OR NOT USE_FILTER_SZIP OR NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SHUFFLE OR NOT USE_FILTER_NBIT OR NOT USE_FILTER_SCALEOFFSET)
ADD_H5_TEST (remove_all ${TESTTYPE} ${arg})
#filter conversions
SET (arg ${FILE8} -f dset_deflate:SZIP=8,NN)
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP OR NOT USE_FILTER_DEFLATE)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_SZIP OR NOT USE_FILTER_DEFLATE)
ADD_H5_TEST (deflate_convert ${TESTTYPE} ${arg})
SET (arg ${FILE7} -f dset_szip:GZIP=1)
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_SZIP OR NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_DEFLATE)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_SZIP OR NOT USE_FILTER_SZIP_ENCODER OR NOT USE_FILTER_DEFLATE)
ADD_H5_TEST (szip_convert ${TESTTYPE} ${arg})
#limit
SET (arg ${FILE4} -f GZIP=1 -m 1024)
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_DEFLATE)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_DEFLATE)
ADD_H5_TEST (deflate_limit ${TESTTYPE} ${arg})
#file
SET (arg ${FILE4} -e ${INFO_FILE})
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_DEFLATE)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_DEFLATE)
ADD_H5_TEST (deflate_file ${TESTTYPE} ${arg})
#########################################################
# layout options (these files have no filters)
#########################################################
ADD_H5_VERIFY_TEST (dset2_chunk_20x10 "TEST" 0 ${FILE4} dset2 CHUNKED --layout=dset2:CHUNK=20x10)
ADD_H5_VERIFY_TEST (chunk_20x10 "TEST" 1 ${FILE4} null CHUNKED -l CHUNK=20x10)
ADD_H5_VERIFY_TEST (dset2_conti "TEST" 0 ${FILE4} dset2 CONTIGUOUS -l dset2:CONTI)
ADD_H5_VERIFY_TEST (conti "TEST" 1 ${FILE4} null CONTIGUOUS -l CONTI)
ADD_H5_VERIFY_TEST (dset2_compa "TEST" 0 ${FILE4} dset2 COMPACT -l dset2:COMPA)
ADD_H5_VERIFY_TEST (compa "TEST" 1 ${FILE4} null COMPACT -l COMPA)
################################################################
# layout conversions (file has no filters)
###############################################################
ADD_H5_VERIFY_TEST (dset_compa_conti "TEST" 0 ${FILE4} dset_compact CONTIGUOUS -l dset_compact:CONTI)
ADD_H5_VERIFY_TEST (dset_compa_chunk "TEST" 0 ${FILE4} dset_compact CHUNKED -l dset_compact:CHUNK=2x5)
ADD_H5_VERIFY_TEST (dset_compa_compa "TEST" 0 ${FILE4} dset_compact COMPACT -l dset_compact:COMPA)
ADD_H5_VERIFY_TEST (dset_conti_compa "TEST" 0 ${FILE4} dset_contiguous COMPACT -l dset_contiguous:COMPA)
ADD_H5_VERIFY_TEST (dset_conti_chunk "TEST" 0 ${FILE4} dset_contiguous CHUNKED -l dset_contiguous:CHUNK=3x6)
ADD_H5_VERIFY_TEST (dset_conti_conti "TEST" 0 ${FILE4} dset_contiguous CONTIGUOUS -l dset_contiguous:CONTI)
ADD_H5_VERIFY_TEST (chunk_compa "TEST" 0 ${FILE4} dset_chunk COMPACT -l dset_chunk:COMPA)
ADD_H5_VERIFY_TEST (chunk_conti "TEST" 0 ${FILE4} dset_chunk CONTIGUOUS -l dset_chunk:CONTI)
ADD_H5_VERIFY_TEST (chunk_18x13 "TEST" 0 ${FILE4} dset_chunk CHUNKED -l dset_chunk:CHUNK=18x13)
# test convert small size dataset ( < 1k) to compact layout without -m
ADD_H5_VERIFY_TEST (contig_small_compa "TEST" 0 ${FILE18} contig_small COMPACT -l contig_small:COMPA)
ADD_H5_VERIFY_TEST (contig_small_fixed_compa "TEST" 0 ${FILE18} chunked_small_fixed COMPACT -l chunked_small_fixed:COMPA)
#---------------------------------------------------------------------------
# Test file contains chunked datasets (need multiple dsets) with
# unlimited max dims. (HDFFV-7933)
# Use first dset to test.
#---------------------------------------------------------------------------
# chunk to chunk - specify chunk dim bigger than any current dim
ADD_H5_VERIFY_TEST (chunk2chunk "TEST" 0 h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk_unlimit1:CHUNK=100x300)
# chunk to contiguous
ADD_H5_VERIFY_TEST (chunk2conti "TEST" 0 h5repack_layout3.h5 chunk_unlimit1 CONTI -l chunk_unlimit1:CONTI)
# chunk to compact - convert big dataset (should be > 64k) for this purpose,
# should remain as original layout (chunk)
ADD_H5_VERIFY_TEST (chunk2compa "TEST" 0 h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk_unlimit1:COMPA)
#--------------------------------------------------------------------------
# Test -f for some specific cases. Chunked dataset with unlimited max dims.
# (HDFFV-8012)
#--------------------------------------------------------------------------
# - should not fail
# - should not change max dims from unlimit
# chunk dim is bigger than dataset dim. ( dset size < 64k )
ADD_H5_VERIFY_TEST (error1 "TEST" 0 h5repack_layout3.h5 chunk_unlimit1 H5S_UNLIMITED -f chunk_unlimit1:NONE)
# chunk dim is bigger than dataset dim. ( dset size > 64k )
ADD_H5_VERIFY_TEST (error2 "TEST" 0 h5repack_layout3.h5 chunk_unlimit2 H5S_UNLIMITED -f chunk_unlimit2:NONE)
# chunk dims are smaller than dataset dims. ( dset size < 64k )
ADD_H5_VERIFY_TEST (error3 "TEST" 0 h5repack_layout3.h5 chunk_unlimit3 H5S_UNLIMITED -f chunk_unlimit3:NONE)
# file input - should not fail
ADD_H5_TEST (error4 "TEST" h5repack_layout3.h5 -f NONE)
#--------------------------------------------------------------------------
# Test base: Convert CHUNK to CONTI for a chunked dataset with small dataset
# (dset size < 64K) and with unlimited max dims on a condition as follow.
# (HDFFV-8214)
#--------------------------------------------------------------------------
# chunk dim is bigger than dataset dim. should succeed.
ADD_H5_VERIFY_TEST (ckdim_biger "TEST" 0 h5repack_layout3.h5 chunk_unlimit2 CONTI -l chunk_unlimit2:CONTI)
# chunk dim is smaller than dataset dim. should succeed.
ADD_H5_VERIFY_TEST (ckdim_smaller "TEST" 0 h5repack_layout3.h5 chunk_unlimit3 CONTI -l chunk_unlimit3:CONTI)
# Native option
# Do not use FILE1, as the named dtype will be converted to native, and h5diff will
# report a difference.
ADD_H5_TEST (native_fill "TEST" ${FILE0} -n)
ADD_H5_TEST (native_attr "TEST" ${FILE2} -n)
# latest file format with long switches. use FILE4=h5repack_layout.h5 (no filters)
SET (arg --layout CHUNK=20x10 --filter GZIP=1 --minimum=10 --native --latest --compact=8 --indexed=6 --ssize=8[:dtype])
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_DEFLATE)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_DEFLATE)
ADD_H5_VERIFY_TEST (layout_long_switches ${TESTTYPE} 1 ${FILE4} null CHUNKED ${arg})
# latest file format with short switches. use FILE4=h5repack_layout.h5 (no filters)
SET (arg -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype])
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_DEFLATE)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_DEFLATE)
ADD_H5_VERIFY_TEST (layout_short_switches ${TESTTYPE} 1 ${FILE4} null CHUNKED ${arg})
# several global filters
SET (arg ${FILE4} --filter GZIP=1 --filter SHUF)
SET (TESTTYPE "TEST")
IF (NOT USE_FILTER_DEFLATE OR NOT USE_FILTER_SHUFFLE)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_DEFLATE OR NOT USE_FILTER_SHUFFLE)
ADD_H5_TEST (global_filters ${TESTTYPE} ${arg})
# syntax of -i infile -o outfile
# latest file format with short switches. use FILE4=h5repack_layout.h5 (no filters)
SET (arg ${FILE4} -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype])
SET (TESTTYPE "LEGACY")
IF (NOT USE_FILTER_DEFLATE)
SET (TESTTYPE "SKIP")
ENDIF (NOT USE_FILTER_DEFLATE)
ADD_H5_TEST_OLD (old_style_layout_short_switches ${TESTTYPE} ${arg})
# add a userblock to file
SET (arg ${FILE1} -u ${PROJECT_BINARY_DIR}/testfiles/ublock.bin -b 2048)
ADD_H5_TEST (add_userblock "TEST" ${arg})
# add alignment
SET (arg ${FILE1} -t 1 -a 1)
ADD_H5_TEST (add_alignment "TEST" ${arg})
# Check repacking file with old version of layout message (should get upgraded
# to new version and be readable, etc.)
ADD_H5_TEST (upgrade_layout "TEST" ${FILE14})
# test for datum size > H5TOOLS_MALLOCSIZE
ADD_H5_TEST (gt_mallocsize "TEST" ${FILE1} -f GZIP=1)
# Check repacking file with committed datatypes in odd configurations
ADD_H5_TEST (committed_dt "TEST" ${FILE15})
# tests family driver (file is located in common testfiles folder, uses TOOLTEST1
ADD_H5_TEST (family "TEST" ${FILE16})
# test various references (bug 1814 and 1726)
ADD_H5_TEST (bug1814 "TEST" ${FILE_REF})
# test attribute with various references (bug1797 / HDFFV-5932)
# the references in attribute of compund or vlen datatype
ADD_H5_TEST (HDFFV-5932 "TEST" ${FILE_ATTR_REF})
# Add test for memory leak in attirbute. This test is verified by CTEST.
# 1. leak from vlen string
# 2. leak from compound type without reference member
# (HDFFV-7840, )
# Note: this test is experimental for sharing test file among tools
ADD_H5_TEST (HDFFV-7840 "TEST" h5diff_attr1.h5)
# tests for metadata block size option ('-M')
ADD_H5_TEST_META (meta_short h5repack_layout.h5 -M 8192)
ADD_H5_TEST_META (meta_long h5repack_layout.h5 --metadata_block_size=8192)
IF (HDF5_TEST_VFD)
# Run test with different Virtual File Driver
FOREACH (vfd ${VFD_LIST})
ADD_VFD_TEST (${vfd} 0)
ENDFOREACH (vfd ${VFD_LIST})
ENDIF (HDF5_TEST_VFD)
ENDIF (BUILD_TESTING)
##############################################################################
##############################################################################
### I N S T A L L A T I O N ###
##############################################################################
##############################################################################
#-----------------------------------------------------------------------------
# Rules for Installation of tools using make Install target
#-----------------------------------------------------------------------------
#INSTALL_PROGRAM_PDB (h5repack ${HDF5_INSTALL_BIN_DIR} toolsapplications)
INSTALL (
TARGETS
h5repack
RUNTIME DESTINATION
${HDF5_INSTALL_BIN_DIR}
COMPONENT
toolsapplications
)
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