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* commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
482 lines
16 KiB
Fortran
482 lines
16 KiB
Fortran
!****h* root/fortran/test/tH5R.f90
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!
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! NAME
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! tH5R.f90
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!
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! FUNCTION
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! Basic testing of Fortran H5R, Reference Interface, APIs.
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!
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! COPYRIGHT
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! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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! Copyright by The HDF Group. *
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! Copyright by the Board of Trustees of the University of Illinois. *
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! All rights reserved. *
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! *
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! This file is part of HDF5. The full HDF5 copyright notice, including *
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! terms governing use, modification, and redistribution, is contained in *
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! the COPYING file, which can be found at the root of the source code *
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! distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
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! If you do not have access to either file, you may request a copy from *
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! help@hdfgroup.org. *
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! * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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!
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! NOTES
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! Tests h5rcreate_f, h5rdereference_f, h5rget_name_f
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! and H5Rget_object_type functions
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!
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! CONTAINS SUBROUTINES
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! refobjtest, refregtest
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!
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!*****
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!
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MODULE TH5R
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USE HDF5
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USE TH5_MISC
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USE TH5_MISC_GEN
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CONTAINS
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SUBROUTINE refobjtest(cleanup, total_error)
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IMPLICIT NONE
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LOGICAL, INTENT(IN) :: cleanup
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INTEGER, INTENT(INOUT) :: total_error
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CHARACTER(LEN=9), PARAMETER :: filename = "reference"
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CHARACTER(LEN=80) :: fix_filename
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CHARACTER(LEN=8), PARAMETER :: dsetnamei = "INTEGERS"
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CHARACTER(LEN=17), PARAMETER :: dsetnamer = "OBJECT_REFERENCES"
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CHARACTER(LEN=6), PARAMETER :: groupname1 = "GROUP1"
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CHARACTER(LEN=6), PARAMETER :: groupname2 = "GROUP2"
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INTEGER(HID_T) :: file_id ! File identifier
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INTEGER(HID_T) :: grp1_id ! Group identifier
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INTEGER(HID_T) :: grp2_id ! Group identifier
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INTEGER(HID_T) :: dset1_id ! Dataset identifier
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INTEGER(HID_T) :: dsetr_id ! Dataset identifier
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INTEGER(HID_T) :: type_id ! Type identifier
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INTEGER(HID_T) :: space_id ! Dataspace identifier
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INTEGER(HID_T) :: spacer_id ! Dataspace identifier
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INTEGER :: error, obj_type
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INTEGER(HSIZE_T), DIMENSION(1) :: dims = (/5/)
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INTEGER(HSIZE_T), DIMENSION(1) :: dimsr= (/4/)
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INTEGER(HSIZE_T), DIMENSION(1) :: my_maxdims = (/5/)
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INTEGER :: rank = 1
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INTEGER :: rankr = 1
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TYPE(hobj_ref_t_f), DIMENSION(4) :: ref
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TYPE(hobj_ref_t_f), DIMENSION(4) :: ref_out
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INTEGER(HSIZE_T), DIMENSION(1) :: ref_dim
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INTEGER, DIMENSION(5) :: DATA = (/1, 2, 3, 4, 5/)
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INTEGER(HSIZE_T), DIMENSION(2) :: data_dims
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CHARACTER(LEN=7) :: buf ! buffer to hold the region name
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CHARACTER(LEN=16) :: buf_big ! buffer bigger then needed
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INTEGER(SIZE_T) :: buf_size ! returned size of the region buffer name
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!
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!Create a new file with Default file access and
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!file creation properties .
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!
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CALL h5_fixname_f(filename, fix_filename, H5P_DEFAULT_F, error)
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IF (error .NE. 0) THEN
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WRITE(*,*) "Cannot modify filename"
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STOP
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ENDIF
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CALL h5fcreate_f(fix_filename, H5F_ACC_TRUNC_F, file_id, error)
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CALL check("h5fcreate_f",error,total_error)
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!
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! Create a group inside the file
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!
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CALL h5gcreate_f(file_id, groupname1, grp1_id, error)
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CALL check("h5gcreate_f",error,total_error)
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!
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! Create a group inside the group GROUP1
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!
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CALL h5gcreate_f(grp1_id, groupname2, grp2_id, error)
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CALL check("h5gcreate_f",error,total_error)
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!
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! Create dataspaces for datasets
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!
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CALL h5screate_simple_f(rank, dims, space_id, error, maxdims=my_maxdims)
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CALL check("h5screate_simple_f",error,total_error)
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CALL h5screate_simple_f(rankr, dimsr, spacer_id, error)
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CALL check("h5screate_simple_f",error,total_error)
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!
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! Create integer dataset
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!
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CALL h5dcreate_f(file_id, dsetnamei, H5T_NATIVE_INTEGER, space_id, &
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dset1_id, error)
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CALL check("h5dcreate_f",error,total_error)
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!
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! Create dataset to store references to the objects
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!
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CALL h5dcreate_f(file_id, dsetnamer, H5T_STD_REF_OBJ, spacer_id, &
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dsetr_id, error)
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CALL check("h5dcreate_f",error,total_error)
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!
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! Create a datatype and store in the file
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!
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CALL h5tcopy_f(H5T_NATIVE_REAL, type_id, error)
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CALL check("h5tcopy_f",error,total_error)
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CALL h5tcommit_f(file_id, "MyType", type_id, error)
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CALL check("h5tcommit_f",error,total_error)
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!
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! Close dataspaces, groups and integer dataset
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!
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CALL h5sclose_f(space_id, error)
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CALL check("h5sclose_f",error,total_error)
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CALL h5sclose_f(spacer_id, error)
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CALL check("h5sclose_f",error,total_error)
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CALL h5dclose_f(dset1_id, error)
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CALL check("h5dclose_f",error,total_error)
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CALL h5tclose_f(type_id, error)
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CALL check("h5tclose_f",error,total_error)
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CALL h5gclose_f(grp1_id, error)
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CALL check("h5gclose_f",error,total_error)
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CALL h5gclose_f(grp2_id, error)
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CALL check("h5gclose_f",error,total_error)
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!
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! Craete references to two groups, integer dataset and shared datatype
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! and write it to the dataset in the file
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!
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CALL h5rcreate_f(file_id, groupname1, ref(1), error)
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CALL check("h5rcreate_f",error,total_error)
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CALL h5rcreate_f(file_id, "/GROUP1/GROUP2", ref(2), error)
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CALL check("h5rcreate_f",error,total_error)
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CALL h5rcreate_f(file_id, dsetnamei, ref(3), error)
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CALL check("h5rcreate_f",error,total_error)
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CALL h5rcreate_f(file_id, "MyType", ref(4), error)
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CALL check("h5rcreate_f",error,total_error)
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ref_dim(1) = SIZE(ref)
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CALL h5dwrite_f(dsetr_id, H5T_STD_REF_OBJ, ref, ref_dim, error)
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CALL check("h5dwrite_f",error,total_error)
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! getting path to normal dataset in root group
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CALL H5Rget_name_f(dsetr_id, ref(1), buf, error, buf_size )
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CALL check("H5Rget_name_f", error, total_error)
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CALL verify("H5Rget_name_f", INT(buf_size),7, total_error)
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CALL verify("H5Rget_name_f", buf, "/GROUP1", total_error)
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! with buffer bigger then needed
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CALL H5Rget_name_f(dsetr_id, ref(1), buf_big, error, buf_size )
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CALL check("H5Rget_name_f", error, total_error)
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CALL verify("H5Rget_name_f", INT(buf_size),7,total_error)
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CALL verify("H5Rget_name_f", TRIM(buf_big), "/GROUP1", total_error)
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! getting path to dataset in /Group1
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CALL H5Rget_name_f(dsetr_id, ref(2), buf_big, error, buf_size )
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CALL check("H5Rget_name_f", error, total_error)
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CALL verify("H5Rget_name_f", INT(buf_size),14,total_error)
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CALL verify("H5Rget_name_f", TRIM(buf_big), "/GROUP1/GROUP2", total_error)
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!
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!Close the dataset
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!
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CALL h5dclose_f(dsetr_id, error)
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CALL check("h5dclose_f",error,total_error)
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!
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! Reopen the dataset with object references
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!
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CALL h5dopen_f(file_id, dsetnamer,dsetr_id,error)
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CALL check("h5dopen_f",error,total_error)
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ref_dim(1) = SIZE(ref_out)
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CALL h5dread_f(dsetr_id, H5T_STD_REF_OBJ, ref_out, ref_dim, error)
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CALL check("h5dread_f",error,total_error)
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!
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!get the third reference's type and Dereference it
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!
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CALL h5rget_object_type_f(dsetr_id, ref(3), obj_type, error)
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CALL check("h5rget_object_type_f",error,total_error)
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IF (obj_type == H5G_DATASET_F) THEN
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CALL h5rdereference_f(dsetr_id, ref(3), dset1_id, error)
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CALL check("h5rdereference_f",error,total_error)
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data_dims(1) = 5
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CALL h5dwrite_f(dset1_id, H5T_NATIVE_INTEGER, DATA, data_dims, error)
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CALL check("h5dwrite_f",error,total_error)
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END IF
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!
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!get the fourth reference's type and Dereference it
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!
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CALL h5rget_object_type_f(dsetr_id, ref(4), obj_type, error)
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CALL check("h5rget_object_type_f",error,total_error)
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IF (obj_type == H5G_TYPE_F) THEN
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CALL h5rdereference_f(dsetr_id, ref(4), type_id, error)
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CALL check("h5rdereference_f",error,total_error)
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END IF
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!
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! Close all objects.
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!
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CALL h5dclose_f(dset1_id, error)
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CALL check("h5dclose_f",error,total_error)
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CALL h5tclose_f(type_id, error)
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CALL check("h5tclose_f",error,total_error)
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CALL h5dclose_f(dsetr_id, error)
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CALL check("h5dclose_f",error,total_error)
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CALL h5fclose_f(file_id, error)
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CALL check("h5fclose_f",error,total_error)
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IF(cleanup) CALL h5_cleanup_f(filename, H5P_DEFAULT_F, error)
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CALL check("h5_cleanup_f", error, total_error)
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RETURN
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END SUBROUTINE refobjtest
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!
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! The following subroutine tests h5rget_region_f, h5rcreate_f, h5rget_name_f,
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! and h5rdereference_f functionalities
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!
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SUBROUTINE refregtest(cleanup, total_error)
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IMPLICIT NONE
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LOGICAL, INTENT(IN) :: cleanup
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INTEGER, INTENT(INOUT) :: total_error
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CHARACTER(LEN=6), PARAMETER :: filename = "Refreg"
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CHARACTER(LEN=80) :: fix_filename
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CHARACTER(LEN=6), PARAMETER :: dsetnamev = "MATRIX"
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CHARACTER(LEN=17), PARAMETER :: dsetnamer = "REGION_REFERENCES"
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CHARACTER(LEN=7) :: buf ! buffer to hold the region name
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CHARACTER(LEN=11) :: buf_big ! buffer bigger then needed
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CHARACTER(LEN=4) :: buf_small ! buffer smaller then needed
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INTEGER(SIZE_T) :: buf_size ! returned size of the region buffer name
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INTEGER(HID_T) :: file_id ! File identifier
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INTEGER(HID_T) :: space_id ! Dataspace identifier
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INTEGER(HID_T) :: spacer_id ! Dataspace identifier
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INTEGER(HID_T) :: dsetv_id ! Dataset identifier
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INTEGER(HID_T) :: dsetr_id ! Dataset identifier
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INTEGER :: error
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! TYPE(hdset_reg_ref_t_f) , DIMENSION(1:2), TARGET :: ref
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TYPE(hdset_reg_ref_t_f) , DIMENSION(1:2) :: ref
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TYPE(hdset_reg_ref_t_f) , DIMENSION(1:2) :: ref_out
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INTEGER(HSIZE_T), DIMENSION(2) :: ref_dim = (/0,0/)
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INTEGER(HSIZE_T), DIMENSION(2) :: data_dims ! = (/0,0/)
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INTEGER(HSIZE_T), DIMENSION(2) :: dims = (/2,9/) ! Datasets dimensions
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INTEGER(HSIZE_T), DIMENSION(1) :: dimsr = (/2/) !
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INTEGER(HSIZE_T), DIMENSION(2) :: start ! = (/0,0/)
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INTEGER(HSIZE_T), DIMENSION(2) :: count ! = (/0,0/)
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INTEGER :: rankr = 1
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INTEGER :: rank = 2
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! INTEGER , DIMENSION(2,9), TARGET :: DATA
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INTEGER , DIMENSION(2,9) :: DATA
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INTEGER , DIMENSION(2,9) :: data_out = 0
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INTEGER(HSIZE_T) , DIMENSION(2,3) :: coord
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INTEGER(SIZE_T) ::num_points = 3 ! Number of selected points
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! type(c_ptr) :: f_ptr
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coord = RESHAPE((/1,1,2,7,1,9/), (/2,3/)) ! Coordinates of selected points
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DATA = RESHAPE ((/1,1,1,2,2,2,3,3,3,4,4,4,5,5,5,6,6,6/), (/2,9/))
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ref_out(1)%ref = 0
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ref_out(2)%ref = 0
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!
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! Initialize FORTRAN predefined datatypes.
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!
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! CALL h5init_types_f(error)
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! CALL check("h5init_types_f", error, total_error)
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!
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! Create a new file.
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!
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CALL h5_fixname_f(filename, fix_filename, H5P_DEFAULT_F, error)
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IF (error .NE. 0) THEN
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WRITE(*,*) "Cannot modify filename"
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STOP
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ENDIF
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CALL h5fcreate_f(fix_filename, H5F_ACC_TRUNC_F, file_id, error)
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! Default file access and file creation
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! properties are used.
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CALL check("h5fcreate_f", error, total_error)
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!
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! Create dataspaces:
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!
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! for dataset with references to dataset regions
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!
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CALL h5screate_simple_f(rankr, dimsr, spacer_id, error)
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CALL check("h5screate_simple_f", error, total_error)
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!
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! for integer dataset
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!
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CALL h5screate_simple_f(rank, dims, space_id, error)
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CALL check("h5screate_simple_f", error, total_error)
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!
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! Create and write datasets:
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!
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! Integer dataset
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!
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CALL h5dcreate_f(file_id, dsetnamev, H5T_NATIVE_INTEGER, space_id, &
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dsetv_id, error)
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CALL check("h5dcreate_f", error, total_error)
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data_dims(1) = 2
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data_dims(2) = 9
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! f_ptr = c_loc(data)
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! CALL h5dwrite_f(dsetv_id, H5T_NATIVE_INTEGER, f_ptr, error)
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CALL h5dwrite_f(dsetv_id, H5T_NATIVE_INTEGER, DATA, data_dims, error)
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CALL check("h5dwrite_f", error, total_error)
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CALL h5dclose_f(dsetv_id, error)
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CALL check("h5dclose_f", error, total_error)
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!
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! Dataset with references
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!
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CALL h5dcreate_f(file_id, dsetnamer, H5T_STD_REF_DSETREG, spacer_id, &
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dsetr_id, error)
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CALL check("h5dcreate_f", error, total_error)
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!
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! Create a reference to the hyperslab selection.
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!
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start(1) = 0
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start(2) = 3
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COUNT(1) = 2
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COUNT(2) = 3
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CALL h5sselect_hyperslab_f(space_id, H5S_SELECT_SET_F, &
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start, count, error)
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CALL check("h5sselect_hyperslab_f", error, total_error)
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ref(1)%ref(:) = 0
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! f_ptr = C_LOC(ref(1))
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! CALL h5rcreate_f(file_id, dsetnamev, 1, space_id, f_ptr, error)
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CALL h5rcreate_f(file_id, dsetnamev, space_id, ref(1), error)
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CALL check("h5rcreate_f", error, total_error)
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!
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! Create a reference to elements selection.
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!
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CALL h5sselect_none_f(space_id, error)
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CALL check("h5sselect_none_f", error, total_error)
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CALL h5sselect_elements_f(space_id, H5S_SELECT_SET_F, rank, num_points,&
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coord, error)
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CALL check("h5sselect_elements_f", error, total_error)
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ref(2)%ref(:) = 0
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CALL h5rcreate_f(file_id, dsetnamev, space_id, ref(2), error)
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CALL check("h5rcreate_f", error, total_error)
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!
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! Write dataset with the references.
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!
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ref_dim(1) = SIZE(ref)
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CALL h5dwrite_f(dsetr_id, H5T_STD_REF_DSETREG, ref, ref_dim, error)
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CALL check("h5dwrite_f", error, total_error)
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!
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! Close all objects.
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!
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CALL h5sclose_f(space_id, error)
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CALL check("h5sclose_f", error, total_error)
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CALL h5sclose_f(spacer_id, error)
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CALL check("h5sclose_f", error, total_error)
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CALL h5dclose_f(dsetr_id, error)
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CALL check("h5dclose_f", error, total_error)
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CALL h5fclose_f(file_id, error)
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CALL check("h5fclose_f", error, total_error)
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!
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! Reopen the file to test selections.
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!
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CALL h5fopen_f (fix_filename, H5F_ACC_RDWR_F, file_id, error)
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CALL check("h5fopen_f", error, total_error)
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CALL h5dopen_f(file_id, dsetnamer, dsetr_id, error)
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CALL check("h5dopen_f", error, total_error)
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!
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! Read references to the dataset regions.
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!
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ref_dim(1) = SIZE(ref_out)
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CALL h5dread_f(dsetr_id, H5T_STD_REF_DSETREG, ref_out, ref_dim, error)
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CALL check("h5dread_f", error, total_error)
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! Get name of the dataset the first region reference points to using H5Rget_name_f
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CALL H5Rget_name_f(dsetr_id, ref_out(1), buf, error, buf_size )
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CALL check("H5Rget_name_f", error, total_error)
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CALL verify("H5Rget_name_f", INT(buf_size),7,total_error)
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CALL verify("H5Rget_name_f", buf, "/MATRIX", total_error)
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! Get name of the dataset the first region reference points to using H5Rget_name_f
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! buffer bigger then needed
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CALL H5Rget_name_f(dsetr_id, ref_out(1), buf_big, error, buf_size )
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CALL check("H5Rget_name_f", error, total_error)
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CALL verify("H5Rget_name_f", INT(buf_size),7,total_error)
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CALL verify("H5Rget_name_f", TRIM(buf_big), "/MATRIX", total_error)
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! Get name of the dataset the first region reference points to using H5Rget_name_f
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! buffer smaller then needed
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CALL H5Rget_name_f(dsetr_id, ref_out(1), buf_small, error, buf_size )
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CALL check("H5Rget_name_f", error, total_error)
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CALL verify("H5Rget_name_f", INT(buf_size),7,total_error)
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CALL verify("H5Rget_name_f", TRIM(buf_small), "/MAT", total_error)
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!
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! Dereference the first reference.
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!
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CALL H5rdereference_f(dsetr_id, ref_out(1), dsetv_id, error)
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CALL check("h5rdereference_f", error, total_error)
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CALL H5rget_region_f(dsetr_id, ref_out(1), space_id, error)
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CALL check("h5rget_region_f", error, total_error)
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! Get name of the dataset the second region reference points to using H5Rget_name_f
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CALL H5Rget_name_f(dsetr_id, ref_out(2), buf, error) ! no optional size
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CALL check("H5Rget_name_f", error, total_error)
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CALL verify("H5Rget_name_f", TRIM(buf), "/MATRIX", total_error)
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!
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! Read selected data from the dataset.
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!
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data_dims(1) = 2
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data_dims(2) = 9
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CALL h5dread_f(dsetv_id, H5T_NATIVE_INTEGER, data_out, data_dims, error, &
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mem_space_id = space_id, file_space_id = space_id)
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CALL check("h5dread_f", error, total_error)
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CALL h5sclose_f(space_id, error)
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CALL check("h5sclose_f", error, total_error)
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CALL h5dclose_f(dsetv_id, error)
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CALL check("h5dclose_f", error, total_error)
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data_out = 0
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!
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! Dereference the second reference.
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!
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CALL H5rdereference_f(dsetr_id, ref_out(2), dsetv_id, error)
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CALL check("h5rdereference_f", error, total_error)
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CALL H5rget_region_f(dsetr_id, ref_out(2), space_id, error)
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CALL check("h5rget_region_f", error, total_error)
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!
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! Read selected data from the dataset.
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!
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CALL h5dread_f(dsetv_id, H5T_NATIVE_INTEGER, data_out, data_dims, error, &
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mem_space_id = space_id, file_space_id = space_id)
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CALL check("h5dread_f", error, total_error)
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!
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! Close all objects
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!
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CALL h5sclose_f(space_id, error)
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CALL check("h5sclose_f", error, total_error)
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CALL h5dclose_f(dsetv_id, error)
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CALL check("h5dclose_f", error, total_error)
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CALL h5dclose_f(dsetr_id, error)
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CALL check("h5dclose_f", error, total_error)
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CALL h5fclose_f(file_id, error)
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CALL check("h5fclose_f", error, total_error)
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IF(cleanup) CALL h5_cleanup_f(filename, H5P_DEFAULT_F, error)
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CALL check("h5_cleanup_f", error, total_error)
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RETURN
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END SUBROUTINE refregtest
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END MODULE TH5R
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