mirror/hdf5
2
0
Fork 0
mirror of https://github.com/HDFGroup/hdf5.git synced 2024-11-21 01:04:10 +08:00
Code Issues Packages Projects Releases Wiki Activity
319ad4c84b
hdf5/test/tarray.c
Albert Cheng ed7d456e51 [svn-r13253] Updated all C and C++ style source code files with the THG copyright notice. 
Tested platform:
Kagiso only since it is only a comment block change.  If it works in one
machine, it should work in all, I hope.  Still need to check the parallel
build on copper.
2007-02-07 09:56:24 -05:00

2159 lines
72 KiB
C
Raw Blame History

This file contains invisible Unicode characters

This file contains invisible Unicode characters that are indistinguishable to humans but may be processed differently by a computer. If you think that this is intentional, you can safely ignore this warning. Use the Escape button to reveal them.

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/***********************************************************
*
* Test program: tarray
*
* Test the Array Datatype functionality
*
*************************************************************/
#include "testhdf5.h"
#include "hdf5.h"
#define FILENAME "tarray1.h5"
#define TESTFILE "tarrold.h5"
/* 1-D array datatype */
#define ARRAY1_RANK 1
#define ARRAY1_DIM1 4
/* 3-D array datatype */
#define ARRAY2_RANK 3
#define ARRAY2_DIM1 3
#define ARRAY2_DIM2 4
#define ARRAY2_DIM3 5
/* 2-D array datatype */
#define ARRAY3_RANK 2
#define ARRAY3_DIM1 6
#define ARRAY3_DIM2 3
/* 1-D dataset with fixed dimensions */
#define SPACE1_NAME "Space1"
#define SPACE1_RANK 1
#define SPACE1_DIM1 4
/* 2-D dataset with fixed dimensions */
#define SPACE2_NAME "Space2"
#define SPACE2_RANK 2
#define SPACE2_DIM1 10
#define SPACE2_DIM2 10
/****************************************************************
**
** test_array_atomic_1d(): Test basic array datatype code.
** Tests 1-D array of atomic datatypes
**
****************************************************************/
static void
test_array_atomic_1d(void)
{
int wdata[SPACE1_DIM1][ARRAY1_DIM1]; /* Information to write */
int rdata[SPACE1_DIM1][ARRAY1_DIM1]; /* Information read in */
hid_t fid1; /* HDF5 File IDs */
hid_t dataset; /* Dataset ID */
hid_t sid1; /* Dataspace ID */
hid_t tid1; /* Datatype ID */
hsize_t sdims1[] = {SPACE1_DIM1};
hsize_t tdims1[] = {ARRAY1_DIM1};
int ndims; /* Array rank for reading */
hsize_t rdims1[H5S_MAX_RANK]; /* Array dimensions for reading */
int i,j; /* counting variables */
herr_t ret; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing 1-D Array of Atomic Datatypes Functionality\n"));
/* Allocate and initialize array data to write */
for(i=0; i<SPACE1_DIM1; i++)
for(j=0; j<ARRAY1_DIM1; j++)
wdata[i][j]=i*10+j;
/* Create file */
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fcreate");
/* Create dataspace for datasets */
sid1 = H5Screate_simple(SPACE1_RANK, sdims1, NULL);
CHECK(sid1, FAIL, "H5Screate_simple");
/* Create a datatype to refer to */
tid1 = H5Tarray_create(H5T_NATIVE_INT, ARRAY1_RANK, tdims1, NULL);
CHECK(tid1, FAIL, "H5Tarray_create");
/* Create a dataset */
dataset=H5Dcreate(fid1,"Dataset1",tid1,sid1,H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate");
/* Write dataset to disk */
ret=H5Dwrite(dataset,tid1,H5S_ALL,H5S_ALL,H5P_DEFAULT,wdata);
CHECK(ret, FAIL, "H5Dwrite");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close datatype */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
/* Close disk dataspace */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Re-open file */
fid1 = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fopen");
/* Open the dataset */
dataset=H5Dopen(fid1,"Dataset1");
CHECK(dataset, FAIL, "H5Dopen");
/* Get the datatype */
tid1 = H5Dget_type (dataset);
CHECK(tid1, FAIL, "H5Dget_type");
/* Check the array rank */
ndims=H5Tget_array_ndims(tid1);
VERIFY(ndims,ARRAY1_RANK,"H5Tget_array_ndims");
/* Get the array dimensions */
ret=H5Tget_array_dims(tid1, rdims1, NULL);
CHECK(ret, FAIL, "H5Tget_array_dims");
/* Check the array dimensions */
for(i=0; i<ndims; i++)
if(rdims1[i]!=tdims1[i]) {
TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%d, tdims1[%d]=%d\n",(int)i,(int)rdims1[i],(int)i,(int)tdims1[i]);
continue;
} /* end if */
/* Read dataset from disk */
ret=H5Dread(dataset,tid1,H5S_ALL,H5S_ALL,H5P_DEFAULT,rdata);
CHECK(ret, FAIL, "H5Dread");
/* Compare data read in */
for(i=0; i<SPACE1_DIM1; i++) {
for(j=0; j<ARRAY1_DIM1; j++) {
if(wdata[i][j]!=rdata[i][j]) {
TestErrPrintf("Array data information doesn't match!, wdata[%d][%d]=%d, rdata[%d][%d]=%d\n",(int)i,(int)j,(int)wdata[i][j],(int)i,(int)j,(int)rdata[i][j]);
continue;
} /* end if */
} /* end for */
} /* end for */
/* Close Datatype */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
} /* end test_array_atomic_1d() */
/****************************************************************
**
** test_array_funcs(): Test some type functions that are and
** aren't supposed to work with array type.
**
****************************************************************/
static void
test_array_funcs(void)
{
hid_t type; /* Datatype ID */
hsize_t tdims1[] = {ARRAY1_DIM1};
int size;
H5T_pad_t inpad;
H5T_norm_t norm;
H5T_cset_t cset;
H5T_str_t strpad;
herr_t ret; /* Generic return value */
/* Create a datatype to refer to */
type = H5Tarray_create(H5T_IEEE_F32BE, ARRAY1_RANK, tdims1, NULL);
CHECK(type, FAIL, "H5Tarray_create");
size=H5Tget_precision(type);
CHECK(size, FAIL, "H5Tget_precision");
size=H5Tget_size(type);
CHECK(size, FAIL, "H5Tget_size");
size=H5Tget_ebias(type);
CHECK(size, FAIL, "H5Tget_ebias");
ret=H5Tset_pad(type, H5T_PAD_ZERO, H5T_PAD_ONE);
CHECK(ret, FAIL, "H5Tset_pad");
inpad=H5Tget_inpad(type);
CHECK(inpad, FAIL, "H5Tget_inpad");
norm=H5Tget_norm(type);
CHECK(norm, FAIL, "H5Tget_norm");
ret=H5Tset_offset(type, (size_t)16);
CHECK(ret, FAIL, "H5Tset_offset");
H5E_BEGIN_TRY {
cset=H5Tget_cset(type);
} H5E_END_TRY;
VERIFY(cset, FAIL, "H5Tget_cset");
H5E_BEGIN_TRY {
strpad=H5Tget_strpad(type);
} H5E_END_TRY;
VERIFY(strpad, FAIL, "H5Tget_strpad");
/* Close datatype */
ret = H5Tclose(type);
CHECK(ret, FAIL, "H5Tclose");
} /* end test_array_funcs */
/****************************************************************
**
** test_array_atomic_3d(): Test basic array datatype code.
** Tests 3-D array of atomic datatypes
**
****************************************************************/
static void
test_array_atomic_3d(void)
{
int wdata[SPACE1_DIM1][ARRAY2_DIM1][ARRAY2_DIM2][ARRAY2_DIM3]; /* Information to write */
int rdata[SPACE1_DIM1][ARRAY2_DIM1][ARRAY2_DIM2][ARRAY2_DIM3]; /* Information read in */
hid_t fid; /* HDF5 File IDs */
hid_t dataset; /* Dataset ID */
hid_t sid; /* Dataspace ID */
hid_t tid; /* Datatype ID */
hsize_t sdims1[] = {SPACE1_DIM1};
hsize_t tdims2[] = {ARRAY2_DIM1,ARRAY2_DIM2,ARRAY2_DIM3};
int ndims; /* Array rank for reading */
hsize_t rdims2[H5S_MAX_RANK]; /* Array dimensions for reading */
int i,j,k,l; /* counting variables */
herr_t ret; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing 3-D Array of Atomic Datatypes Functionality\n"));
/* Allocate and initialize array data to write */
for(i=0; i<SPACE1_DIM1; i++)
for(j=0; j<ARRAY2_DIM1; j++)
for(k=0; k<ARRAY2_DIM2; k++)
for(l=0; l<ARRAY2_DIM3; l++)
wdata[i][j][k][l]=i*1000+j*100+k*10+l;
/* Create file */
fid = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid, FAIL, "H5Fcreate");
/* Create dataspace for datasets */
sid = H5Screate_simple(SPACE1_RANK, sdims1, NULL);
CHECK(sid, FAIL, "H5Screate_simple");
/* Create a datatype to refer to */
tid = H5Tarray_create(H5T_NATIVE_INT, ARRAY2_RANK, tdims2, NULL);
CHECK(tid, FAIL, "H5Tarray_create");
/* Create a dataset */
dataset=H5Dcreate(fid,"Dataset1",tid,sid,H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate");
/* Write dataset to disk */
ret=H5Dwrite(dataset,tid,H5S_ALL,H5S_ALL,H5P_DEFAULT,wdata);
CHECK(ret, FAIL, "H5Dwrite");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close datatype */
ret = H5Tclose(tid);
CHECK(ret, FAIL, "H5Tclose");
/* Close disk dataspace */
ret = H5Sclose(sid);
CHECK(ret, FAIL, "H5Sclose");
/* Close file */
ret = H5Fclose(fid);
CHECK(ret, FAIL, "H5Fclose");
/* Re-open file */
fid = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT);
CHECK(fid, FAIL, "H5Fopen");
/* Open the dataset */
dataset=H5Dopen(fid,"Dataset1");
CHECK(dataset, FAIL, "H5Dopen");
/* Get the datatype */
tid = H5Dget_type (dataset);
CHECK(tid, FAIL, "H5Dget_type");
/* Check the array rank */
ndims=H5Tget_array_ndims(tid);
VERIFY(ndims,ARRAY2_RANK,"H5Tget_array_ndims");
/* Get the array dimensions */
ret = H5Tget_array_dims(tid, rdims2, NULL);
CHECK(ret, FAIL, "H5Tget_array_dims");
/* Check the array dimensions */
for(i=0; i<ndims; i++)
if(rdims2[i]!=tdims2[i]) {
TestErrPrintf("Array dimension information doesn't match!, rdims2[%d]=%d, tdims2[%d]=%d\n",(int)i,(int)rdims2[i],(int)i,(int)tdims2[i]);
continue;
} /* end if */
/* Read dataset from disk */
ret=H5Dread(dataset,tid,H5S_ALL,H5S_ALL,H5P_DEFAULT,rdata);
CHECK(ret, FAIL, "H5Dread");
/* Compare data read in */
for(i=0; i<SPACE1_DIM1; i++) {
for(j=0; j<ARRAY2_DIM1; j++) {
for(k=0; k<ARRAY2_DIM2; k++) {
for(l=0; l<ARRAY2_DIM3; l++) {
if(wdata[i][j][k][l]!=rdata[i][j][k][l]) {
TestErrPrintf("Array data information doesn't match!, wdata[%d][%d][%d][%d]=%d, rdata[%d][%d][%d][%d]=%d\n",(int)i,(int)j,(int)k,(int)l,(int)wdata[i][j][k][l],(int)i,(int)j,(int)k,(int)l,(int)rdata[i][j][k][l]);
continue;
} /* end if */
} /* end for */
} /* end for */
} /* end for */
} /* end for */
/* Close Datatype */
ret = H5Tclose(tid);
CHECK(ret, FAIL, "H5Tclose");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close file */
ret = H5Fclose(fid);
CHECK(ret, FAIL, "H5Fclose");
} /* end test_array_atomic_3d() */
/****************************************************************
**
** test_array_array_atomic(): Test basic array datatype code.
** Tests 1-D array 2-D arrays of atomic datatypes
**
****************************************************************/
static void
test_array_array_atomic(void)
{
int wdata[SPACE1_DIM1][ARRAY1_DIM1][ARRAY3_DIM1][ARRAY3_DIM2]; /* Information to write */
int rdata[SPACE1_DIM1][ARRAY1_DIM1][ARRAY3_DIM1][ARRAY3_DIM2]; /* Information read in */
hid_t fid; /* HDF5 File IDs */
hid_t dataset; /* Dataset ID */
hid_t sid; /* Dataspace ID */
hid_t tid1; /* 1-D array Datatype ID */
hid_t tid2; /* 2-D array Datatype ID */
hsize_t sdims1[] = {SPACE1_DIM1};
hsize_t tdims1[] = {ARRAY1_DIM1};
hsize_t tdims2[] = {ARRAY3_DIM1,ARRAY3_DIM2};
int ndims1; /* Array rank for reading */
int ndims2; /* Array rank for reading */
hsize_t rdims1[H5S_MAX_RANK]; /* Array dimensions for reading */
hsize_t rdims2[H5S_MAX_RANK]; /* Array dimensions for reading */
int i,j,k,l; /* counting variables */
herr_t ret; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing 1-D Array 2-D Arrays of Atomic Datatypes Functionality\n"));
/* Allocate and initialize array data to write */
for(i=0; i<SPACE1_DIM1; i++)
for(j=0; j<ARRAY1_DIM1; j++)
for(k=0; k<ARRAY3_DIM1; k++)
for(l=0; l<ARRAY3_DIM2; l++)
wdata[i][j][k][l]=i*1000+j*100+k*10+l;
/* Create file */
fid = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid, FAIL, "H5Fcreate");
/* Create dataspace for datasets */
sid = H5Screate_simple(SPACE1_RANK, sdims1, NULL);
CHECK(sid, FAIL, "H5Screate_simple");
/* Create a 2-D datatype to refer to */
tid2 = H5Tarray_create(H5T_NATIVE_INT, ARRAY3_RANK, tdims2, NULL);
CHECK(tid2, FAIL, "H5Tarray_create");
/* Create a 1-D datatype to refer to */
tid1 = H5Tarray_create(tid2, ARRAY1_RANK, tdims1, NULL);
CHECK(tid1, FAIL, "H5Tarray_create");
/* Create a dataset */
dataset=H5Dcreate(fid,"Dataset1",tid1,sid,H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate");
/* Write dataset to disk */
ret=H5Dwrite(dataset,tid1,H5S_ALL,H5S_ALL,H5P_DEFAULT,wdata);
CHECK(ret, FAIL, "H5Dwrite");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close datatypes */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
ret = H5Tclose(tid2);
CHECK(ret, FAIL, "H5Tclose");
/* Close disk dataspace */
ret = H5Sclose(sid);
CHECK(ret, FAIL, "H5Sclose");
/* Close file */
ret = H5Fclose(fid);
CHECK(ret, FAIL, "H5Fclose");
/* Re-open file */
fid = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT);
CHECK(fid, FAIL, "H5Fopen");
/* Open the dataset */
dataset=H5Dopen(fid,"Dataset1");
CHECK(dataset, FAIL, "H5Dopen");
/* Get the 1-D datatype */
tid1 = H5Dget_type (dataset);
CHECK(tid1, FAIL, "H5Dget_type");
/* Check the 1-D array rank */
ndims1 = H5Tget_array_ndims(tid1);
VERIFY(ndims1,ARRAY1_RANK,"H5Tget_array_ndims");
/* Get the 1-D array dimensions */
ret = H5Tget_array_dims(tid1, rdims1, NULL);
CHECK(ret, FAIL, "H5Tget_array_dims");
/* Check the array dimensions */
for(i=0; i<ndims1; i++)
if(rdims1[i]!=tdims1[i]) {
TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%d, tdims1[%d]=%d\n",(int)i,(int)rdims1[i],(int)i,(int)tdims1[i]);
continue;
} /* end if */
/* Get the 2-D datatype */
tid2 = H5Tget_super (tid1);
CHECK(tid2, FAIL, "H5Tget_super");
/* Check the 2-D array rank */
ndims2=H5Tget_array_ndims(tid2);
VERIFY(ndims2,ARRAY3_RANK,"H5Tget_array_ndims");
/* Get the 2-D array dimensions */
ret = H5Tget_array_dims(tid2, rdims2, NULL);
CHECK(ret, FAIL, "H5Tget_array_dims");
/* Check the array dimensions */
for(i=0; i<ndims2; i++)
if(rdims2[i]!=tdims2[i]) {
TestErrPrintf("Array dimension information doesn't match!, rdims2[%d]=%d, tdims2[%d]=%d\n",(int)i,(int)rdims2[i],(int)i,(int)tdims2[i]);
continue;
} /* end if */
/* Read dataset from disk */
ret=H5Dread(dataset,tid1,H5S_ALL,H5S_ALL,H5P_DEFAULT,rdata);
CHECK(ret, FAIL, "H5Dread");
/* Compare data read in */
for(i=0; i<SPACE1_DIM1; i++) {
for(j=0; j<ARRAY1_DIM1; j++) {
for(k=0; k<ARRAY3_DIM1; k++) {
for(l=0; l<ARRAY3_DIM2; l++) {
if(wdata[i][j][k][l]!=rdata[i][j][k][l]) {
TestErrPrintf("Array data information doesn't match!, wdata[%d][%d][%d][%d]=%d, rdata[%d][%d][%d][%d]=%d\n",(int)i,(int)j,(int)k,(int)l,(int)wdata[i][j][k][l],(int)i,(int)j,(int)k,(int)l,(int)rdata[i][j][k][l]);
continue;
} /* end if */
} /* end for */
} /* end for */
} /* end for */
} /* end for */
/* Close Datatypes */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
ret = H5Tclose(tid2);
CHECK(ret, FAIL, "H5Tclose");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close file */
ret = H5Fclose(fid);
CHECK(ret, FAIL, "H5Fclose");
} /* end test_array_array_atomic() */
/****************************************************************
**
** test_array_compound_atomic(): Test basic array datatype code.
** Tests 1-D array of compound datatypes (with no array fields)
**
****************************************************************/
static void
test_array_compound_atomic(void)
{
typedef struct { /* Typedef for compound datatype */
int i;
float f;
} s1_t;
s1_t wdata[SPACE1_DIM1][ARRAY1_DIM1]; /* Information to write */
s1_t rdata[SPACE1_DIM1][ARRAY1_DIM1]; /* Information read in */
hid_t fid1; /* HDF5 File IDs */
hid_t dataset; /* Dataset ID */
hid_t sid1; /* Dataspace ID */
hid_t tid1; /* Array Datatype ID */
hid_t tid2; /* Compound Datatype ID */
hsize_t sdims1[] = {SPACE1_DIM1};
hsize_t tdims1[] = {ARRAY1_DIM1};
int ndims; /* Array rank for reading */
hsize_t rdims1[H5S_MAX_RANK]; /* Array dimensions for reading */
int nmemb; /* Number of compound members */
char *mname; /* Name of compound field */
size_t off; /* Offset of compound field */
hid_t mtid; /* Datatype ID for field */
int i,j; /* counting variables */
herr_t ret; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing 1-D Array of Compound Atomic Datatypes Functionality\n"));
/* Initialize array data to write */
for(i=0; i<SPACE1_DIM1; i++)
for(j=0; j<ARRAY1_DIM1; j++) {
wdata[i][j].i=i*10+j;
wdata[i][j].f=(float)(i*2.5+j);
} /* end for */
/* Create file */
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fcreate");
/* Create dataspace for datasets */
sid1 = H5Screate_simple(SPACE1_RANK, sdims1, NULL);
CHECK(sid1, FAIL, "H5Screate_simple");
/* Create a compound datatype to refer to */
tid2 = H5Tcreate(H5T_COMPOUND, sizeof(s1_t));
CHECK(tid2, FAIL, "H5Tcreate");
/* Insert integer field */
ret = H5Tinsert (tid2, "i", HOFFSET(s1_t,i), H5T_NATIVE_INT);
CHECK(ret, FAIL, "H5Tinsert");
/* Insert float field */
ret = H5Tinsert (tid2, "f", HOFFSET(s1_t,f), H5T_NATIVE_FLOAT);
CHECK(ret, FAIL, "H5Tinsert");
/* Create an array datatype to refer to */
tid1 = H5Tarray_create(tid2, ARRAY1_RANK, tdims1, NULL);
CHECK(tid1, FAIL, "H5Tarray_create");
/* Close compound datatype */
ret=H5Tclose(tid2);
CHECK(ret, FAIL, "H5Tclose");
/* Create a dataset */
dataset=H5Dcreate(fid1,"Dataset1",tid1,sid1,H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate");
/* Write dataset to disk */
ret=H5Dwrite(dataset,tid1,H5S_ALL,H5S_ALL,H5P_DEFAULT,wdata);
CHECK(ret, FAIL, "H5Dwrite");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close datatype */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
/* Close disk dataspace */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Re-open file */
fid1 = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fopen");
/* Open the dataset */
dataset=H5Dopen(fid1,"Dataset1");
CHECK(dataset, FAIL, "H5Dopen");
/* Get the datatype */
tid1 = H5Dget_type (dataset);
CHECK(tid1, FAIL, "H5Dget_type");
/* Check the array rank */
ndims=H5Tget_array_ndims(tid1);
VERIFY(ndims,ARRAY1_RANK,"H5Tget_array_ndims");
/* Get the array dimensions */
ret = H5Tget_array_dims(tid1, rdims1, NULL);
CHECK(ret, FAIL, "H5Tget_array_dims");
/* Check the array dimensions */
for(i=0; i<ndims; i++)
if(rdims1[i]!=tdims1[i]) {
TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%d, tdims1[%d]=%d\n",(int)i,(int)rdims1[i],(int)i,(int)tdims1[i]);
continue;
} /* end if */
/* Get the compound datatype */
tid2 = H5Tget_super (tid1);
CHECK(tid2, FAIL, "H5Tget_super");
/* Check the number of members */
nmemb=H5Tget_nmembers(tid2);
VERIFY(nmemb,2,"H5Tget_nmembers");
/* Check the 1st field's name */
mname=H5Tget_member_name(tid2,0);
CHECK(mname, NULL, "H5Tget_member_name");
if(HDstrcmp(mname,"i")!=0)
TestErrPrintf("Compound field name doesn't match!, mname=%s\n",mname);
free(mname);
/* Check the 1st field's offset */
off=H5Tget_member_offset(tid2,0);
VERIFY(off, HOFFSET(s1_t,i), "H5Tget_member_offset");
/* Check the 1st field's datatype */
mtid=H5Tget_member_type(tid2,0);
CHECK(mtid, FAIL, "H5Tget_member_type");
if((ret=H5Tequal(mtid,H5T_NATIVE_INT))<=0)
TestErrPrintf("Compound data type is incorrect!, ret=%d\n",(int)ret);
ret=H5Tclose(mtid);
CHECK(mtid, FAIL, "H5Tclose");
/* Check the 2nd field's name */
mname=H5Tget_member_name(tid2,1);
CHECK(mname, NULL, "H5Tget_member_name");
if(HDstrcmp(mname,"f")!=0)
TestErrPrintf("Compound field name doesn't match!, mname=%s\n",mname);
free(mname);
/* Check the 2nd field's offset */
off=H5Tget_member_offset(tid2,1);
VERIFY(off, HOFFSET(s1_t,f), "H5Tget_member_offset");
/* Check the 2nd field's datatype */
mtid=H5Tget_member_type(tid2,1);
CHECK(mtid, FAIL, "H5Tget_member_type");
if((ret=H5Tequal(mtid,H5T_NATIVE_FLOAT))<=0)
TestErrPrintf("Compound data type is incorrect!, ret=%d\n",(int)ret);
ret=H5Tclose(mtid);
CHECK(mtid, FAIL, "H5Tclose");
/* Close Compound Datatype */
ret = H5Tclose(tid2);
CHECK(ret, FAIL, "H5Tclose");
/* Read dataset from disk */
ret=H5Dread(dataset,tid1,H5S_ALL,H5S_ALL,H5P_DEFAULT,rdata);
CHECK(ret, FAIL, "H5Dread");
/* Compare data read in */
for(i=0; i<SPACE1_DIM1; i++) {
for(j=0; j<ARRAY1_DIM1; j++) {
if(wdata[i][j].i!=rdata[i][j].i) {
TestErrPrintf("Array data information doesn't match!, wdata[%d][%d].i=%d, rdata[%d][%d].i=%d\n",(int)i,(int)j,(int)wdata[i][j].i,(int)i,(int)j,(int)rdata[i][j].i);
continue;
} /* end if */
if(wdata[i][j].f!=rdata[i][j].f) {
TestErrPrintf("Array data information doesn't match!, wdata[%d][%d].f=%f, rdata[%d][%d].f=%f\n",(int)i,(int)j,wdata[i][j].f,(int)i,(int)j,rdata[i][j].f);
continue;
} /* end if */
} /* end for */
} /* end for */
/* Close Datatype */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
} /* end test_array_compound_atomic() */
/****************************************************************
**
** test_array_compound_array(): Test basic array datatype code.
** Tests 1-D array of compound datatypes (with array fields)
**
****************************************************************/
static void
test_array_compound_array(void)
{
typedef struct { /* Typedef for compound datatype */
int i;
float f[ARRAY1_DIM1];
} s1_t;
s1_t wdata[SPACE1_DIM1][ARRAY1_DIM1]; /* Information to write */
s1_t rdata[SPACE1_DIM1][ARRAY1_DIM1]; /* Information read in */
hid_t fid1; /* HDF5 File IDs */
hid_t dataset; /* Dataset ID */
hid_t sid1; /* Dataspace ID */
hid_t tid1; /* Array Datatype ID */
hid_t tid2; /* Compound Datatype ID */
hid_t tid3; /* Nested Array Datatype ID */
hsize_t sdims1[] = {SPACE1_DIM1};
hsize_t tdims1[] = {ARRAY1_DIM1};
int ndims; /* Array rank for reading */
hsize_t rdims1[H5S_MAX_RANK]; /* Array dimensions for reading */
int nmemb; /* Number of compound members */
char *mname; /* Name of compound field */
size_t off; /* Offset of compound field */
hid_t mtid; /* Datatype ID for field */
H5T_class_t mclass; /* Datatype class for field */
int i,j,k; /* counting variables */
herr_t ret; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing 1-D Array of Compound Array Datatypes Functionality\n"));
/* Initialize array data to write */
for(i=0; i<SPACE1_DIM1; i++)
for(j=0; j<ARRAY1_DIM1; j++) {
wdata[i][j].i=i*10+j;
for(k=0; k<ARRAY1_DIM1; k++)
wdata[i][j].f[k]=(float)(i*10+j*2.5+k);
} /* end for */
/* Create file */
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fcreate");
/* Create dataspace for datasets */
sid1 = H5Screate_simple(SPACE1_RANK, sdims1, NULL);
CHECK(sid1, FAIL, "H5Screate_simple");
/* Create a compound datatype to refer to */
tid2 = H5Tcreate(H5T_COMPOUND, sizeof(s1_t));
CHECK(tid2, FAIL, "H5Tcreate");
/* Insert integer field */
ret = H5Tinsert (tid2, "i", HOFFSET(s1_t,i), H5T_NATIVE_INT);
CHECK(ret, FAIL, "H5Tinsert");
/* Create an array of floats datatype */
tid3 = H5Tarray_create(H5T_NATIVE_FLOAT, ARRAY1_RANK, tdims1, NULL);
CHECK(tid3, FAIL, "H5Tarray_create");
/* Insert float array field */
ret = H5Tinsert (tid2, "f", HOFFSET(s1_t,f), tid3);
CHECK(ret, FAIL, "H5Tinsert");
/* Close array of floats field datatype */
ret=H5Tclose(tid3);
CHECK(ret, FAIL, "H5Tclose");
/* Create an array datatype to refer to */
tid1 = H5Tarray_create(tid2, ARRAY1_RANK, tdims1, NULL);
CHECK(tid1, FAIL, "H5Tarray_create");
/* Close compound datatype */
ret=H5Tclose(tid2);
CHECK(ret, FAIL, "H5Tclose");
/* Create a dataset */
dataset=H5Dcreate(fid1,"Dataset1",tid1,sid1,H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate");
/* Write dataset to disk */
ret=H5Dwrite(dataset,tid1,H5S_ALL,H5S_ALL,H5P_DEFAULT,wdata);
CHECK(ret, FAIL, "H5Dwrite");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close datatype */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
/* Close disk dataspace */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Re-open file */
fid1 = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fopen");
/* Open the dataset */
dataset=H5Dopen(fid1,"Dataset1");
CHECK(dataset, FAIL, "H5Dopen");
/* Get the datatype */
tid1 = H5Dget_type (dataset);
CHECK(tid1, FAIL, "H5Dget_type");
/* Check the array rank */
ndims=H5Tget_array_ndims(tid1);
VERIFY(ndims,ARRAY1_RANK,"H5Tget_array_ndims");
/* Get the array dimensions */
ret = H5Tget_array_dims(tid1, rdims1, NULL);
CHECK(ret, FAIL, "H5Tget_array_dims");
/* Check the array dimensions */
for(i=0; i<ndims; i++)
if(rdims1[i]!=tdims1[i]) {
TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%d, tdims1[%d]=%d\n",(int)i,(int)rdims1[i],(int)i,(int)tdims1[i]);
continue;
} /* end if */
/* Get the compound datatype */
tid2 = H5Tget_super (tid1);
CHECK(tid2, FAIL, "H5Tget_super");
/* Check the number of members */
nmemb=H5Tget_nmembers(tid2);
VERIFY(nmemb,2,"H5Tget_nmembers");
/* Check the 1st field's name */
mname=H5Tget_member_name(tid2,0);
CHECK(mname, NULL, "H5Tget_member_name");
if(HDstrcmp(mname,"i")!=0)
TestErrPrintf("Compound field name doesn't match!, mname=%s\n",mname);
free(mname);
/* Check the 1st field's offset */
off=H5Tget_member_offset(tid2,0);
VERIFY(off, HOFFSET(s1_t,i), "H5Tget_member_offset");
/* Check the 1st field's datatype */
mtid=H5Tget_member_type(tid2,0);
CHECK(mtid, FAIL, "H5Tget_member_type");
if((ret=H5Tequal(mtid,H5T_NATIVE_INT))<=0)
TestErrPrintf("Compound data type is incorrect!, ret=%d\n",(int)ret);
ret=H5Tclose(mtid);
CHECK(mtid, FAIL, "H5Tclose");
/* Check the 2nd field's name */
mname=H5Tget_member_name(tid2,1);
CHECK(mname, NULL, "H5Tget_member_name");
if(HDstrcmp(mname,"f")!=0)
TestErrPrintf("Compound field name doesn't match!, mname=%s\n",mname);
free(mname);
/* Check the 2nd field's offset */
off=H5Tget_member_offset(tid2,1);
VERIFY(off, HOFFSET(s1_t,f), "H5Tget_member_offset");
/* Check the 2nd field's datatype */
mtid=H5Tget_member_type(tid2,1);
CHECK(mtid, FAIL, "H5Tget_member_type");
/* Get the 2nd field's class */
mclass=H5Tget_class(mtid);
VERIFY(mclass, H5T_ARRAY, "H5Tget_class");
/* Check the array rank */
ndims=H5Tget_array_ndims(mtid);
VERIFY(ndims,ARRAY1_RANK,"H5Tget_array_ndims");
/* Get the array dimensions */
ret = H5Tget_array_dims(mtid, rdims1, NULL);
CHECK(ret, FAIL, "H5Tget_array_dims");
/* Check the array dimensions */
for(i=0; i<ndims; i++)
if(rdims1[i]!=tdims1[i]) {
TestErrPrintf("Nested array dimension information doesn't match!, rdims1[%d]=%d, tdims1[%d]=%d\n",(int)i,(int)rdims1[i],(int)i,(int)tdims1[i]);
continue;
} /* end if */
/* Check the nested array's datatype */
tid3=H5Tget_super(mtid);
CHECK(tid3, FAIL, "H5Tget_super");
if((ret=H5Tequal(tid3,H5T_NATIVE_FLOAT))<=0)
TestErrPrintf("Compound data type is incorrect!, ret=%d\n",(int)ret);
/* Close the array's base type datatype */
ret=H5Tclose(tid3);
CHECK(mtid, FAIL, "H5Tclose");
/* Close the member datatype */
ret=H5Tclose(mtid);
CHECK(mtid, FAIL, "H5Tclose");
/* Close Compound Datatype */
ret = H5Tclose(tid2);
CHECK(ret, FAIL, "H5Tclose");
/* Read dataset from disk */
ret=H5Dread(dataset,tid1,H5S_ALL,H5S_ALL,H5P_DEFAULT,rdata);
CHECK(ret, FAIL, "H5Dread");
/* Compare data read in */
for(i=0; i<SPACE1_DIM1; i++) {
for(j=0; j<ARRAY1_DIM1; j++) {
if(wdata[i][j].i!=rdata[i][j].i) {
TestErrPrintf("Array data information doesn't match!, wdata[%d][%d].i=%d, rdata[%d][%d].i=%d\n",(int)i,(int)j,(int)wdata[i][j].i,(int)i,(int)j,(int)rdata[i][j].i);
continue;
} /* end if */
for(k=0; k<ARRAY1_DIM1; k++)
if(wdata[i][j].f[k]!=rdata[i][j].f[k]) {
TestErrPrintf("Array data information doesn't match!, wdata[%d][%d].f[%d]=%f, rdata[%d][%d].f[%d]=%f\n",(int)i,(int)j,(int)k,wdata[i][j].f[k],(int)i,(int)j,(int)k,rdata[i][j].f[k]);
continue;
} /* end if */
} /* end for */
} /* end for */
/* Close Datatype */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
} /* end test_array_compound_array() */
void *test_array_alloc_custom(size_t size, void *info);
void test_array_free_custom(void *mem, void *info);
/****************************************************************
**
** test_array_alloc_custom(): Test VL datatype custom memory
** allocation routines. This routine just uses malloc to
** allocate the memory and increments the amount of memory
** allocated.
**
****************************************************************/
void *test_array_alloc_custom(size_t size, void *info)
{
void *ret_value=NULL; /* Pointer to return */
int *mem_used=(int *)info; /* Get the pointer to the memory used */
size_t extra; /* Extra space needed */
/*
* This weird contortion is required on the DEC Alpha to keep the
* alignment correct - QAK
*/
extra=MAX(sizeof(void *),sizeof(size_t));
if((ret_value=HDmalloc(extra+size))!=NULL) {
*(size_t *)ret_value=size;
*mem_used+=size;
} /* end if */
ret_value=((unsigned char *)ret_value)+extra;
return(ret_value);
}
/****************************************************************
**
** test_array_free_custom(): Test VL datatype custom memory
** allocation routines. This routine just uses free to
** release the memory and decrements the amount of memory
** allocated.
**
****************************************************************/
void test_array_free_custom(void *_mem, void *info)
{
unsigned char *mem;
int *mem_used=(int *)info; /* Get the pointer to the memory used */
size_t extra; /* Extra space needed */
/*
* This weird contortion is required on the DEC Alpha to keep the
* alignment correct - QAK
*/
extra=MAX(sizeof(void *),sizeof(size_t));
if(_mem!=NULL) {
mem=((unsigned char *)_mem)-extra;
*mem_used-=*(size_t *)mem;
HDfree(mem);
} /* end if */
}
/****************************************************************
**
** test_array_vlen_atomic(): Test basic array datatype code.
** Tests 1-D array of atomic VL datatypes
**
****************************************************************/
static void
test_array_vlen_atomic(void)
{
hvl_t wdata[SPACE1_DIM1][ARRAY1_DIM1]; /* Information to write */
hvl_t rdata[SPACE1_DIM1][ARRAY1_DIM1]; /* Information read in */
hid_t fid1; /* HDF5 File IDs */
hid_t dataset; /* Dataset ID */
hid_t sid1; /* Dataspace ID */
hid_t tid1; /* Array Datatype ID */
hid_t tid2; /* VL Datatype ID */
hid_t tid3; /* Atomic Datatype ID */
hsize_t sdims1[] = {SPACE1_DIM1};
hsize_t tdims1[] = {ARRAY1_DIM1};
int ndims; /* Array rank for reading */
hsize_t rdims1[H5S_MAX_RANK]; /* Array dimensions for reading */
H5T_class_t mclass; /* Datatype class for VL */
hid_t xfer_pid; /* Dataset transfer property list ID */
hsize_t size; /* Number of bytes which will be used */
int mem_used=0; /* Memory used during allocation */
int i,j,k; /* counting variables */
herr_t ret; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing 1-D Array of Atomic Variable-Length Datatypes Functionality\n"));
/* Initialize array data to write */
for(i=0; i<SPACE1_DIM1; i++)
for(j=0; j<ARRAY1_DIM1; j++) {
wdata[i][j].p=malloc((i+j+1)*sizeof(unsigned int));
wdata[i][j].len=i+j+1;
for(k=0; k<(i+j+1); k++)
((unsigned int *)wdata[i][j].p)[k]=i*100+j*10+k;
} /* end for */
/* Create file */
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fcreate");
/* Create dataspace for datasets */
sid1 = H5Screate_simple(SPACE1_RANK, sdims1, NULL);
CHECK(sid1, FAIL, "H5Screate_simple");
/* Create a compound datatype to refer to */
tid2 = H5Tvlen_create(H5T_NATIVE_UINT);
CHECK(tid2, FAIL, "H5Tcreate");
/* Create an array datatype to refer to */
tid1 = H5Tarray_create(tid2, ARRAY1_RANK, tdims1, NULL);
CHECK(tid1, FAIL, "H5Tarray_create");
/* Close VL datatype */
ret=H5Tclose(tid2);
CHECK(ret, FAIL, "H5Tclose");
/* Create a dataset */
dataset=H5Dcreate(fid1,"Dataset1",tid1,sid1,H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate");
/* Write dataset to disk */
ret=H5Dwrite(dataset,tid1,H5S_ALL,H5S_ALL,H5P_DEFAULT,wdata);
CHECK(ret, FAIL, "H5Dwrite");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close datatype */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
/* Close disk dataspace */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Re-open file */
fid1 = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fopen");
/* Open the dataset */
dataset=H5Dopen(fid1,"Dataset1");
CHECK(dataset, FAIL, "H5Dopen");
/* Get the dataspace */
sid1 = H5Dget_space (dataset);
CHECK(sid1, FAIL, "H5Dget_space");
/* Get the datatype */
tid1 = H5Dget_type (dataset);
CHECK(tid1, FAIL, "H5Dget_type");
/* Check the array rank */
ndims=H5Tget_array_ndims(tid1);
VERIFY(ndims,ARRAY1_RANK,"H5Tget_array_ndims");
/* Get the array dimensions */
ret = H5Tget_array_dims(tid1, rdims1, NULL);
CHECK(ret, FAIL, "H5Tget_array_dims");
/* Check the array dimensions */
for(i=0; i<ndims; i++)
if(rdims1[i]!=tdims1[i]) {
TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%d, tdims1[%d]=%d\n",(int)i,(int)rdims1[i],(int)i,(int)tdims1[i]);
continue;
} /* end if */
/* Get the VL datatype */
tid2 = H5Tget_super (tid1);
CHECK(tid2, FAIL, "H5Tget_super");
/* Get the 2nd field's class */
mclass=H5Tget_class(tid2);
VERIFY(mclass, H5T_VLEN, "H5Tget_class");
/* Check the VL datatype's base type */
tid3=H5Tget_super(tid2);
CHECK(tid3, FAIL, "H5Tget_super");
if((ret=H5Tequal(tid3,H5T_NATIVE_UINT))<=0)
TestErrPrintf("VL base datatype is incorrect!, ret=%d\n",(int)ret);
/* Close the array's base type datatype */
ret=H5Tclose(tid3);
CHECK(ret, FAIL, "H5Tclose");
/* Close VL Datatype */
ret = H5Tclose(tid2);
CHECK(ret, FAIL, "H5Tclose");
/* Change to the custom memory allocation routines for reading VL data */
xfer_pid=H5Pcreate(H5P_DATASET_XFER);
CHECK(xfer_pid, FAIL, "H5Pcreate");
ret=H5Pset_vlen_mem_manager(xfer_pid,test_array_alloc_custom,&mem_used,test_array_free_custom,&mem_used);
CHECK(ret, FAIL, "H5Pset_vlen_mem_manager");
/* Make certain the correct amount of memory will be used */
ret=H5Dvlen_get_buf_size(dataset,tid1,sid1,&size);
CHECK(ret, FAIL, "H5Dvlen_get_buf_size");
/* # elements allocated = (1 + 2 + 3 + 4) + (2 + 3 + 4 + 5) +
* (3 + 4 + 5 + 6) + (4 + 5 + 6 + 7) = 64 elements
*/
VERIFY(size,64*sizeof(unsigned int),"H5Dvlen_get_buf_size");
/* Read dataset from disk */
ret=H5Dread(dataset,tid1,H5S_ALL,H5S_ALL,xfer_pid,rdata);
CHECK(ret, FAIL, "H5Dread");
/* Make certain the correct amount of memory has been used */
/* # elements allocated = (1 + 2 + 3 + 4) + (2 + 3 + 4 + 5) +
* (3 + 4 + 5 + 6) + (4 + 5 + 6 + 7) = 64 elements
*/
VERIFY(mem_used,64*sizeof(unsigned int),"H5Dread");
/* Compare data read in */
for(i=0; i<SPACE1_DIM1; i++) {
for(j=0; j<ARRAY1_DIM1; j++) {
if(wdata[i][j].len!=rdata[i][j].len) {
TestErrPrintf("VL data length don't match!, wdata[%d][%d].len=%d, rdata[%d][%d].len=%d\n",(int)i,(int)j,(int)wdata[i][j].len,(int)i,(int)j,(int)rdata[i][j].len);
continue;
} /* end if */
for(k=0; k<(int)rdata[i][j].len; k++) {
if( ((unsigned int *)wdata[i][j].p)[k] != ((unsigned int *)rdata[i][j].p)[k] ) {
TestErrPrintf("VL data values don't match!, wdata[%d][%d].p[%d]=%d, rdata[%d][%d].p[%d]=%d\n",(int)i,(int)j,(int)k, (int)((unsigned int *)wdata[i][j].p)[k], (int)i,(int)j,(int)k, (int)((unsigned int *)rdata[i][j].p)[k]);
continue;
} /* end if */
} /* end for */
} /* end for */
} /* end for */
/* Reclaim the read VL data */
ret=H5Dvlen_reclaim(tid1,sid1,xfer_pid,rdata);
CHECK(ret, FAIL, "H5Dvlen_reclaim");
/* Make certain the VL memory has been freed */
VERIFY(mem_used,0,"H5Dvlen_reclaim");
/* Reclaim the write VL data */
ret=H5Dvlen_reclaim(tid1,sid1,H5P_DEFAULT,wdata);
CHECK(ret, FAIL, "H5Dvlen_reclaim");
/* Close dataset transfer property list */
ret = H5Pclose(xfer_pid);
CHECK(ret, FAIL, "H5Pclose");
/* Close Datatype */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
} /* end test_array_vlen_atomic() */
/****************************************************************
**
** test_array_vlen_array(): Test basic array datatype code.
** Tests 1-D array of 1-D array VL datatypes
**
****************************************************************/
static void
test_array_vlen_array(void)
{
hvl_t wdata[SPACE1_DIM1][ARRAY1_DIM1]; /* Information to write */
hvl_t rdata[SPACE1_DIM1][ARRAY1_DIM1]; /* Information read in */
hid_t fid1; /* HDF5 File IDs */
hid_t dataset; /* Dataset ID */
hid_t sid1; /* Dataspace ID */
hid_t tid1; /* Array Datatype ID */
hid_t tid2; /* VL Datatype ID */
hid_t tid3; /* Nested Array Datatype ID */
hid_t tid4; /* Atomic Datatype ID */
hsize_t sdims1[] = {SPACE1_DIM1};
hsize_t tdims1[] = {ARRAY1_DIM1};
int ndims; /* Array rank for reading */
hsize_t rdims1[H5S_MAX_RANK]; /* Array dimensions for reading */
H5T_class_t mclass; /* Datatype class for VL */
hid_t xfer_pid; /* Dataset transfer property list ID */
hsize_t size; /* Number of bytes which will be used */
int mem_used=0; /* Memory used during allocation */
int i,j,k,l; /* Index variables */
herr_t ret; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing 1-D Array of 1-D Array Variable-Length Datatypes Functionality\n"));
/* Initialize array data to write */
for(i=0; i<SPACE1_DIM1; i++)
for(j=0; j<ARRAY1_DIM1; j++) {
wdata[i][j].p=malloc((i+j+1)*(sizeof(unsigned int)*ARRAY1_DIM1));
wdata[i][j].len=i+j+1;
for(k=0; k<(i+j+1); k++)
for(l=0; l<ARRAY1_DIM1; l++)
((unsigned int *)wdata[i][j].p)[k*ARRAY1_DIM1+l]=i*1000+j*100+k*10+l;
} /* end for */
/* Create file */
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fcreate");
/* Create dataspace for datasets */
sid1 = H5Screate_simple(SPACE1_RANK, sdims1, NULL);
CHECK(sid1, FAIL, "H5Screate_simple");
/* Create the nested array datatype to refer to */
tid3 = H5Tarray_create(H5T_NATIVE_UINT, ARRAY1_RANK, tdims1, NULL);
CHECK(tid3, FAIL, "H5Tcreate");
/* Create a VL datatype of 1-D arrays to refer to */
tid2 = H5Tvlen_create(tid3);
CHECK(tid2, FAIL, "H5Tcreate");
/* Close nested array datatype */
ret=H5Tclose(tid3);
CHECK(ret, FAIL, "H5Tclose");
/* Create an array datatype to refer to */
tid1 = H5Tarray_create(tid2, ARRAY1_RANK, tdims1, NULL);
CHECK(tid1, FAIL, "H5Tarray_create");
/* Close VL datatype */
ret=H5Tclose(tid2);
CHECK(ret, FAIL, "H5Tclose");
/* Create a dataset */
dataset=H5Dcreate(fid1,"Dataset1",tid1,sid1,H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate");
/* Write dataset to disk */
ret=H5Dwrite(dataset,tid1,H5S_ALL,H5S_ALL,H5P_DEFAULT,wdata);
CHECK(ret, FAIL, "H5Dwrite");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close datatype */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
/* Close disk dataspace */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Re-open file */
fid1 = H5Fopen(FILENAME, H5F_ACC_RDONLY, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fopen");
/* Open the dataset */
dataset=H5Dopen(fid1,"Dataset1");
CHECK(dataset, FAIL, "H5Dopen");
/* Get the dataspace */
sid1 = H5Dget_space (dataset);
CHECK(sid1, FAIL, "H5Dget_space");
/* Get the datatype */
tid1 = H5Dget_type (dataset);
CHECK(tid1, FAIL, "H5Dget_type");
/* Check the array rank */
ndims=H5Tget_array_ndims(tid1);
VERIFY(ndims,ARRAY1_RANK,"H5Tget_array_ndims");
/* Get the array dimensions */
ret = H5Tget_array_dims(tid1, rdims1, NULL);
CHECK(ret, FAIL, "H5Tget_array_dims");
/* Check the array dimensions */
for(i=0; i<ndims; i++)
if(rdims1[i]!=tdims1[i]) {
TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%d, tdims1[%d]=%d\n",(int)i,(int)rdims1[i],(int)i,(int)tdims1[i]);
continue;
} /* end if */
/* Get the VL datatype */
tid2 = H5Tget_super (tid1);
CHECK(tid2, FAIL, "H5Tget_super");
/* Get the VL datatype's class */
mclass=H5Tget_class(tid2);
VERIFY(mclass, H5T_VLEN, "H5Tget_class");
/* Check the VL datatype's base type */
tid3=H5Tget_super(tid2);
CHECK(tid3, FAIL, "H5Tget_super");
/* Get the nested array datatype's class */
mclass=H5Tget_class(tid3);
VERIFY(mclass, H5T_ARRAY, "H5Tget_class");
/* Check the array rank */
ndims=H5Tget_array_ndims(tid3);
VERIFY(ndims,ARRAY1_RANK,"H5Tget_array_ndims");
/* Get the array dimensions */
ret = H5Tget_array_dims(tid3, rdims1, NULL);
CHECK(ret, FAIL, "H5Tget_array_dims");
/* Check the array dimensions */
for(i=0; i<ndims; i++)
if(rdims1[i]!=tdims1[i]) {
TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%d, tdims1[%d]=%d\n",(int)i,(int)rdims1[i],(int)i,(int)tdims1[i]);
continue;
} /* end if */
/* Check the array's base type */
tid4=H5Tget_super(tid3);
CHECK(tid4, FAIL, "H5Tget_super");
if((ret=H5Tequal(tid4,H5T_NATIVE_UINT))<=0)
TestErrPrintf("VL base datatype is incorrect!, ret=%d\n",(int)ret);
/* Close the array's base type datatype */
ret=H5Tclose(tid4);
CHECK(ret, FAIL, "H5Tclose");
/* Close the nested array datatype */
ret=H5Tclose(tid3);
CHECK(ret, FAIL, "H5Tclose");
/* Close VL Datatype */
ret = H5Tclose(tid2);
CHECK(ret, FAIL, "H5Tclose");
/* Change to the custom memory allocation routines for reading VL data */
xfer_pid=H5Pcreate(H5P_DATASET_XFER);
CHECK(xfer_pid, FAIL, "H5Pcreate");
ret=H5Pset_vlen_mem_manager(xfer_pid,test_array_alloc_custom,&mem_used,test_array_free_custom,&mem_used);
CHECK(ret, FAIL, "H5Pset_vlen_mem_manager");
/* Make certain the correct amount of memory will be used */
ret=H5Dvlen_get_buf_size(dataset,tid1,sid1,&size);
CHECK(ret, FAIL, "H5Dvlen_get_buf_size");
/* # elements allocated = (1 + 2 + 3 + 4) + (2 + 3 + 4 + 5) +
* (3 + 4 + 5 + 6) + (4 + 5 + 6 + 7) = 64*ARRAY1_DIM1 elements
*/
VERIFY(size,64*(sizeof(unsigned int)*ARRAY1_DIM1),"H5Dvlen_get_buf_size");
/* Read dataset from disk */
ret=H5Dread(dataset,tid1,H5S_ALL,H5S_ALL,xfer_pid,rdata);
CHECK(ret, FAIL, "H5Dread");
/* Make certain the correct amount of memory has been used */
/* # elements allocated = (1 + 2 + 3 + 4) + (2 + 3 + 4 + 5) +
* (3 + 4 + 5 + 6) + (4 + 5 + 6 + 7) = 64*ARRAY1_DIM1 elements
*/
VERIFY(mem_used,64*(sizeof(unsigned int)*ARRAY1_DIM1),"H5Dread");
/* Compare data read in */
for(i=0; i<SPACE1_DIM1; i++) {
for(j=0; j<ARRAY1_DIM1; j++) {
if(wdata[i][j].len!=rdata[i][j].len) {
TestErrPrintf("VL data length don't match!, wdata[%d][%d].len=%d, rdata[%d][%d].len=%d\n",(int)i,(int)j,(int)wdata[i][j].len,(int)i,(int)j,(int)rdata[i][j].len);
continue;
} /* end if */
for(k=0; k<(int)rdata[i][j].len; k++) {
for(l=0; l<ARRAY1_DIM1; l++) {
if( ((unsigned int *)wdata[i][j].p)[k*ARRAY1_DIM1+l] != ((unsigned int *)rdata[i][j].p)[k*ARRAY1_DIM1+l] ) {
TestErrPrintf("VL data values don't match!, wdata[%d][%d].p[%d][%d]=%d, rdata[%d][%d].p[%d][%d]=%d\n",(int)i,(int)j,(int)k,(int)l, (int)((unsigned int *)wdata[i][j].p)[k*ARRAY1_DIM1+l], (int)i,(int)j,(int)k,(int)l, (int)((unsigned int *)rdata[i][j].p)[k*ARRAY1_DIM1+l]);
continue;
} /* end if */
} /* end for */
} /* end for */
} /* end for */
} /* end for */
/* Reclaim the read VL data */
ret=H5Dvlen_reclaim(tid1,sid1,xfer_pid,rdata);
CHECK(ret, FAIL, "H5Dvlen_reclaim");
/* Make certain the VL memory has been freed */
VERIFY(mem_used,0,"H5Dvlen_reclaim");
/* Reclaim the write VL data */
ret=H5Dvlen_reclaim(tid1,sid1,H5P_DEFAULT,wdata);
CHECK(ret, FAIL, "H5Dvlen_reclaim");
/* Close dataset transfer property list */
ret = H5Pclose(xfer_pid);
CHECK(ret, FAIL, "H5Pclose");
/* Close Datatype */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
} /* end test_array_vlen_array() */
#define FIELDNAME "ArrayofStructures"
#define LENGTH 5
#define ALEN 10
#define RANK 1
#define NMAX 100
typedef struct
{
int nsubfields;
char *name[NMAX];
size_t offset[NMAX];
hid_t datatype[NMAX];
} CmpDTSinfo;
/****************************************************************
**
** test_array_bkg(): Test basic array datatype code.
** Tests reading compound datatype with array fields and
** writing partial fields.
**
****************************************************************/
static void
test_array_bkg(void)
{
herr_t status = -1;
hid_t fid, array_dt;
hid_t space;
hid_t type;
hid_t dataset;
hsize_t dim[] = {LENGTH};
hsize_t dima[] = {ALEN};
int i, j;
unsigned ndims[3] = {1,1,1};
typedef struct
{
int a[ALEN];
float b[ALEN];
double c[ALEN];
} CmpField;
CmpField cf[LENGTH];
CmpField cfr[LENGTH];
CmpDTSinfo dtsinfo;
typedef struct
{
float b[ALEN];
} fld_t;
fld_t fld[LENGTH];
fld_t fldr[LENGTH];
/* Output message about test being performed */
MESSAGE(5, ("Testing Partial I/O of Array Fields in Compound Datatype Functionality\n"));
/* Initialize the data */
/* ------------------- */
for (i = 0; i < LENGTH; i++)
{
for (j = 0; j < ALEN; j++)
{
cf[i].a[j] = 100*(i+1) + j;
cf[i].b[j] = (float)(100.*(i+1) + 0.01*j);
cf[i].c[j] = 100.*(i+1) + 0.02*j;
}
}
/* Set the number of data members */
/* ------------------------------ */
dtsinfo.nsubfields = 3;
/* Initialize the offsets */
/* ----------------------- */
dtsinfo.offset[0] = HOFFSET(CmpField, a);
dtsinfo.offset[1] = HOFFSET(CmpField, b);
dtsinfo.offset[2] = HOFFSET(CmpField, c);
/* Initialize the data type IDs */
/* ---------------------------- */
dtsinfo.datatype[0] = H5T_NATIVE_INT;
dtsinfo.datatype[1] = H5T_NATIVE_FLOAT;
dtsinfo.datatype[2] = H5T_NATIVE_DOUBLE;
/* Initialize the names of data members */
/* ------------------------------------ */
for (i = 0; i < dtsinfo.nsubfields; i++)
dtsinfo.name[i] = (char *)HDcalloc((size_t)20, sizeof(char));
strcpy(dtsinfo.name[0], "One");
strcpy(dtsinfo.name[1], "Two");
strcpy(dtsinfo.name[2], "Three");
/* Create file */
/* ----------- */
fid = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid, FAIL, "H5Fcreate");
/* Create data space */
/* ----------------- */
space = H5Screate_simple(RANK, dim, NULL);
CHECK(space, FAIL, "H5Screate_simple");
/* Create the memory data type */
/* --------------------------- */
type = H5Tcreate(H5T_COMPOUND, sizeof(CmpField));
CHECK(type, FAIL, "H5Tcreate");
/* Add members to the compound data type */
/* -------------------------------------- */
for ( i = 0; i < dtsinfo.nsubfields; i++)
{
array_dt = H5Tarray_create(dtsinfo.datatype[i], ndims[i], dima, NULL);
CHECK(array_dt, FAIL, "H5Tarray_create");
status = H5Tinsert (type, dtsinfo.name[i], dtsinfo.offset[i], array_dt);
CHECK(status, FAIL, "H5Tinsert");
status = H5Tclose(array_dt);
CHECK(status, FAIL, "H5Tclose");
}
/* Create the dataset */
/* ------------------ */
dataset = H5Dcreate(fid, FIELDNAME, type, space, H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate");
/* Write data to the dataset */
/* ------------------------- */
status = H5Dwrite(dataset, type, H5S_ALL, H5S_ALL, H5P_DEFAULT, cf);
CHECK(status, FAIL, "H5Dwrite");
status = H5Dread(dataset, type, H5S_ALL, H5S_ALL, H5P_DEFAULT, cfr);
CHECK(status, FAIL, "H5Dread");
/* Verify correct data */
/* ------------------- */
for (i = 0; i < LENGTH; i++) {
for (j = 0; j < ALEN; j++) {
if(cf[i].a[j]!=cfr[i].a[j]) {
TestErrPrintf("Field a data doesn't match, cf[%d].a[%d]=%d, cfr[%d].a[%d]=%d\n",(int)i,(int)j,(int)cf[i].a[j],(int)i,(int)j,(int)cfr[i].a[j]);
continue;
}
if(cf[i].b[j]!=cfr[i].b[j]) {
TestErrPrintf("Field b data doesn't match, cf[%d].b[%d]=%f, cfr[%d].b[%d]=%f\n",(int)i,(int)j,(float)cf[i].b[j],(int)i,(int)j,(float)cfr[i].b[j]);
continue;
}
if(cf[i].c[j]!=cfr[i].c[j]) {
TestErrPrintf("Field c data doesn't match, cf[%d].b[%d]=%f, cfr[%d].b[%d]=%f\n",(int)i,(int)j,(float)cf[i].c[j],(int)i,(int)j,(float)cfr[i].c[j]);
continue;
}
}
}
/* Release memory resources */
/* ------------------------ */
for (i = 0; i < dtsinfo.nsubfields; i++)
free(dtsinfo.name[i]);
/* Release IDs */
/* ----------- */
status = H5Tclose(type);
CHECK(status, FAIL, "H5Tclose");
status = H5Sclose(space);
CHECK(status, FAIL, "H5Sclose");
status = H5Dclose(dataset);
CHECK(status, FAIL, "H5Dclose");
status = H5Fclose(fid);
CHECK(status, FAIL, "H5Fclose");
/******************************/
/* Reopen the file and update */
/******************************/
fid = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK(fid, FAIL, "H5Fopen");
dataset = H5Dopen(fid, FIELDNAME );
CHECK(dataset, FAIL, "H5Dopen");
type = H5Tcreate(H5T_COMPOUND, sizeof(fld_t));
CHECK(type, FAIL, "H5Tcreate");
array_dt = H5Tarray_create(H5T_NATIVE_FLOAT, 1, dima, NULL);
CHECK(array_dt, FAIL, "H5Tarray_create");
status = H5Tinsert (type, "Two", HOFFSET(fld_t, b), array_dt);
CHECK(status, FAIL, "H5Tinsert");
/* Initialize the data to overwrite */
/* -------------------------------- */
for (i=0; i< LENGTH; i++)
for (j = 0; j < ALEN; j++)
cf[i].b[j]=fld[i].b[j] = (float)1.313;
status = H5Dwrite (dataset, type, H5S_ALL, H5S_ALL, H5P_DEFAULT, fld);
CHECK(status, FAIL, "H5Dwrite");
/* Read just the field changed */
status = H5Dread (dataset, type, H5S_ALL, H5S_ALL, H5P_DEFAULT, fldr);
CHECK(status, FAIL, "H5Dread");
for (i=0; i< LENGTH; i++)
for (j = 0; j < ALEN; j++)
if(fld[i].b[j]!=fldr[i].b[j]) {
TestErrPrintf("Field data doesn't match, fld[%d].b[%d]=%f, fldr[%d].b[%d]=%f\n",(int)i,(int)j,(float)fld[i].b[j],(int)i,(int)j,(float)fldr[i].b[j]);
continue;
}
status = H5Tclose (type);
CHECK(status, FAIL, "H5Tclose");
status = H5Tclose (array_dt);
CHECK(status, FAIL, "H5Tclose");
type = H5Dget_type(dataset);
CHECK(type, FAIL, "H5Dget_type");
/* Read the entire dataset again */
status = H5Dread(dataset, type, H5S_ALL, H5S_ALL, H5P_DEFAULT, cfr);
CHECK(status, FAIL, "H5Dread");
/* Verify correct data */
/* ------------------- */
for (i = 0; i < LENGTH; i++) {
for (j = 0; j < ALEN; j++) {
if(cf[i].a[j]!=cfr[i].a[j]) {
TestErrPrintf("Field a data doesn't match, cf[%d].a[%d]=%d, cfr[%d].a[%d]=%d\n",(int)i,(int)j,(int)cf[i].a[j],(int)i,(int)j,(int)cfr[i].a[j]);
continue;
}
if(cf[i].b[j]!=cfr[i].b[j]) {
TestErrPrintf("Field b data doesn't match, cf[%d].b[%d]=%f, cfr[%d].b[%d]=%f\n",(int)i,(int)j,(float)cf[i].b[j],(int)i,(int)j,(float)cfr[i].b[j]);
continue;
}
if(cf[i].c[j]!=cfr[i].c[j]) {
TestErrPrintf("Field c data doesn't match, cf[%d].b[%d]=%f, cfr[%d].b[%d]=%f\n",(int)i,(int)j,(float)cf[i].c[j],(int)i,(int)j,(float)cfr[i].c[j]);
continue;
}
}
}
status = H5Dclose(dataset);
CHECK(status, FAIL, "H5Dclose");
status = H5Tclose (type);
CHECK(status, FAIL, "H5Tclose");
status = H5Fclose(fid);
CHECK(status, FAIL, "H5Fclose");
/****************************************************/
/* Reopen the file and print out all the data again */
/****************************************************/
fid = H5Fopen(FILENAME, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK(fid, FAIL, "H5Fopen");
dataset = H5Dopen(fid, FIELDNAME );
CHECK(dataset, FAIL, "H5Dopen");
type = H5Dget_type(dataset);
CHECK(type, FAIL, "H5Dget_type");
/* Reset the data to read in */
/* ------------------------- */
memset(cfr, 0, sizeof(CmpField)*LENGTH);
status = H5Dread(dataset, type, H5S_ALL, H5S_ALL, H5P_DEFAULT, cfr);
CHECK(status, FAIL, "H5Dread");
/* Verify correct data */
/* ------------------- */
for (i = 0; i < LENGTH; i++) {
for (j = 0; j < ALEN; j++) {
if(cf[i].a[j]!=cfr[i].a[j]) {
TestErrPrintf("Field a data doesn't match, cf[%d].a[%d]=%d, cfr[%d].a[%d]=%d\n",(int)i,(int)j,(int)cf[i].a[j],(int)i,(int)j,(int)cfr[i].a[j]);
continue;
}
if(cf[i].b[j]!=cfr[i].b[j]) {
TestErrPrintf("Field b data doesn't match, cf[%d].b[%d]=%f, cfr[%d].b[%d]=%f\n",(int)i,(int)j,(float)cf[i].b[j],(int)i,(int)j,(float)cfr[i].b[j]);
continue;
}
if(cf[i].c[j]!=cfr[i].c[j]) {
TestErrPrintf("Field c data doesn't match, cf[%d].b[%d]=%f, cfr[%d].b[%d]=%f\n",(int)i,(int)j,(float)cf[i].c[j],(int)i,(int)j,(float)cfr[i].c[j]);
continue;
}
}
}
status = H5Dclose(dataset);
CHECK(status, FAIL, "H5Dclose");
status = H5Tclose (type);
CHECK(status, FAIL, "H5Tclose");
status = H5Fclose(fid);
CHECK(status, FAIL, "H5Fclose");
} /* end test_array_bkg() */
/****************************************************************
**
** test_compat(): Test array datatype compatibility code.
** Reads file containing old version of datatype object header
** messages for compound datatypes and verifies reading the older
** version of the is working correctly.
**
****************************************************************/
static void
test_compat(void)
{
typedef struct { /* Typedef for compound datatype */
short i;
float f;
long l;
} s2_t;
typedef struct { /* Typedef for compound datatype */
short i;
float f[ARRAY1_DIM1];
long l[ARRAY1_DIM1];
double d;
} s3_t;
char testfile[512]=""; /* Character buffer for corrected test file name */
char *srcdir = getenv("srcdir"); /* Pointer to the directory the source code is located within */
hid_t fid1; /* HDF5 File IDs */
hid_t dataset; /* Dataset ID */
hid_t tid1; /* Array Datatype ID */
hid_t tid2; /* Datatype ID */
hsize_t tdims1[] = {ARRAY1_DIM1};
int ndims; /* Array rank for reading */
hsize_t rdims1[H5S_MAX_RANK]; /* Array dimensions for reading */
H5T_class_t mclass; /* Datatype class for VL */
int nmemb; /* Number of compound members */
char *mname; /* Name of compound field */
size_t off; /* Offset of compound field */
hid_t mtid; /* Datatype ID for field */
int i; /* Index variables */
herr_t ret; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing Array Datatypes Compatibility Functionality\n"));
/*
* Try reading a file that has been prepared that has datasets with
* compound datatypes which use an older version (version 1) of the
* datatype object header message for describing the datatype.
*
* If this test fails and the datatype object header message version has
* changed, follow the instructions in gen_old_array.c for regenerating
* the tarrold.h5 file.
*/
/* Generate the correct name for the test file, by prepending the source path */
if (srcdir && ((strlen(srcdir) + strlen(TESTFILE) + 1) < sizeof(testfile))) {
strcpy(testfile, srcdir);
strcat(testfile, "/");
}
strcat(testfile, TESTFILE);
/* Open the testfile */
fid1 = H5Fopen(testfile, H5F_ACC_RDONLY, H5P_DEFAULT);
CHECK_I(fid1, "H5Fopen");
/* Only try to proceed if the file is around */
if (fid1 >= 0){
/* Open the first dataset (with no array fields) */
dataset = H5Dopen(fid1, "Dataset1");
CHECK_I(dataset, "H5Dopen");
/* Get the datatype */
tid1=H5Dget_type(dataset);
CHECK_I(tid1, "H5Dget_type");
/* Verify datatype class */
mclass=H5Tget_class(tid1);
VERIFY(mclass, H5T_COMPOUND, "H5Tget_class");
/* Get the number of compound datatype fields */
nmemb=H5Tget_nmembers(tid1);
VERIFY(nmemb,3,"H5Tget_nmembers");
/* Check the 1st field's name */
mname=H5Tget_member_name(tid1,0);
CHECK(mname, NULL, "H5Tget_member_name");
if(HDstrcmp(mname,"i")!=0)
TestErrPrintf("Compound field name doesn't match!, mname=%s\n",mname);
free(mname);
/* Check the 1st field's offset */
off=H5Tget_member_offset(tid1,0);
VERIFY(off, 0, "H5Tget_member_offset");
/* Check the 1st field's datatype */
mtid=H5Tget_member_type(tid1,0);
CHECK(mtid, FAIL, "H5Tget_member_type");
if((ret=H5Tequal(mtid,H5T_STD_I16LE))<=0)
TestErrPrintf("Compound data type is incorrect!, ret=%d\n",(int)ret);
ret=H5Tclose(mtid);
CHECK(mtid, FAIL, "H5Tclose");
/* Check the 2nd field's name */
mname=H5Tget_member_name(tid1,1);
CHECK(mname, NULL, "H5Tget_member_name");
if(HDstrcmp(mname,"f")!=0)
TestErrPrintf("Compound field name doesn't match!, mname=%s\n",mname);
free(mname);
/* Check the 2nd field's offset */
off=H5Tget_member_offset(tid1,1);
VERIFY(off, 4, "H5Tget_member_offset");
/* Check the 2nd field's datatype */
mtid=H5Tget_member_type(tid1,1);
CHECK(mtid, FAIL, "H5Tget_member_type");
if((ret=H5Tequal(mtid,H5T_IEEE_F32LE))<=0)
TestErrPrintf("Compound data type is incorrect!, ret=%d\n",(int)ret);
ret=H5Tclose(mtid);
CHECK(mtid, FAIL, "H5Tclose");
/* Check the 3rd field's name */
mname=H5Tget_member_name(tid1,2);
CHECK(mname, NULL, "H5Tget_member_name");
if(HDstrcmp(mname,"l")!=0)
TestErrPrintf("Compound field name doesn't match!, mname=%s\n",mname);
free(mname);
/* Check the 3rd field's offset */
off=H5Tget_member_offset(tid1,2);
VERIFY(off, 8, "H5Tget_member_offset");
/* Check the 3rd field's datatype */
mtid=H5Tget_member_type(tid1,2);
CHECK(mtid, FAIL, "H5Tget_member_type");
if((ret=H5Tequal(mtid,H5T_STD_I32LE))<=0)
TestErrPrintf("Compound data type is incorrect!, ret=%d\n",(int)ret);
ret=H5Tclose(mtid);
CHECK(mtid, FAIL, "H5Tclose");
/* Close the datatype */
ret = H5Tclose(tid1);
CHECK_I(ret, "H5Tclose");
/* Close the dataset */
ret = H5Dclose(dataset);
CHECK_I(ret, "H5Dclose");
/* Open the second dataset (with array fields) */
dataset = H5Dopen(fid1, "Dataset2");
CHECK_I(dataset, "H5Dopen");
/* Get the datatype */
tid1=H5Dget_type(dataset);
CHECK_I(tid1, "H5Dget_type");
/* Verify datatype class */
mclass=H5Tget_class(tid1);
VERIFY(mclass, H5T_COMPOUND, "H5Tget_class");
/* Get the number of compound datatype fields */
nmemb=H5Tget_nmembers(tid1);
VERIFY(nmemb,4,"H5Tget_nmembers");
/* Check the 1st field's name */
mname=H5Tget_member_name(tid1,0);
CHECK(mname, NULL, "H5Tget_member_name");
if(HDstrcmp(mname,"i")!=0)
TestErrPrintf("Compound field name doesn't match!, mname=%s\n",mname);
free(mname);
/* Check the 1st field's offset */
off=H5Tget_member_offset(tid1,0);
VERIFY(off, 0, "H5Tget_member_offset");
/* Check the 1st field's datatype */
mtid=H5Tget_member_type(tid1,0);
CHECK(mtid, FAIL, "H5Tget_member_type");
if((ret=H5Tequal(mtid,H5T_STD_I16LE))<=0)
TestErrPrintf("Compound data type is incorrect!, ret=%d\n",(int)ret);
ret=H5Tclose(mtid);
CHECK(mtid, FAIL, "H5Tclose");
/* Check the 2nd field's name */
mname=H5Tget_member_name(tid1,1);
CHECK(mname, NULL, "H5Tget_member_name");
if(HDstrcmp(mname,"f")!=0)
TestErrPrintf("Compound field name doesn't match!, mname=%s\n",mname);
free(mname);
/* Check the 2nd field's offset */
off=H5Tget_member_offset(tid1,1);
VERIFY(off, 4, "H5Tget_member_offset");
/* Check the 2nd field's datatype */
mtid=H5Tget_member_type(tid1,1);
CHECK(mtid, FAIL, "H5Tget_member_type");
/* Verify datatype class */
mclass=H5Tget_class(mtid);
VERIFY(mclass, H5T_ARRAY, "H5Tget_class");
/* Check the array rank */
ndims=H5Tget_array_ndims(mtid);
VERIFY(ndims,ARRAY1_RANK,"H5Tget_array_ndims");
/* Get the array dimensions */
ret = H5Tget_array_dims(mtid, rdims1, NULL);
CHECK(ret, FAIL, "H5Tget_array_dims");
/* Check the array dimensions */
for(i=0; i<ndims; i++)
if(rdims1[i]!=tdims1[i]) {
TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%d, tdims1[%d]=%d\n",(int)i,(int)rdims1[i],(int)i,(int)tdims1[i]);
continue;
} /* end if */
/* Check the array's base datatype */
tid2=H5Tget_super(mtid);
CHECK(tid2, FAIL, "H5Tget_super");
if((ret=H5Tequal(tid2,H5T_IEEE_F32LE))<=0)
TestErrPrintf("Compound data type is incorrect!, ret=%d\n",(int)ret);
ret=H5Tclose(tid2);
CHECK(ret, FAIL, "H5Tclose");
ret=H5Tclose(mtid);
CHECK(ret, FAIL, "H5Tclose");
/* Check the 3rd field's name */
mname=H5Tget_member_name(tid1,2);
CHECK(mname, NULL, "H5Tget_member_name");
if(HDstrcmp(mname,"l")!=0)
TestErrPrintf("Compound field name doesn't match!, mname=%s\n",mname);
free(mname);
/* Check the 3rd field's offset */
off=H5Tget_member_offset(tid1,2);
VERIFY(off, 20, "H5Tget_member_offset");
/* Check the 3rd field's datatype */
mtid=H5Tget_member_type(tid1,2);
CHECK(mtid, FAIL, "H5Tget_member_type");
/* Verify datatype class */
mclass=H5Tget_class(mtid);
VERIFY(mclass, H5T_ARRAY, "H5Tget_class");
/* Check the array rank */
ndims=H5Tget_array_ndims(mtid);
VERIFY(ndims,ARRAY1_RANK,"H5Tget_array_ndims");
/* Get the array dimensions */
ret = H5Tget_array_dims(mtid,rdims1, NULL);
CHECK(ret, FAIL, "H5Tget_array_dims");
/* Check the array dimensions */
for(i=0; i<ndims; i++)
if(rdims1[i]!=tdims1[i]) {
TestErrPrintf("Array dimension information doesn't match!, rdims1[%d]=%d, tdims1[%d]=%d\n",(int)i,(int)rdims1[i],(int)i,(int)tdims1[i]);
continue;
} /* end if */
/* Check the array's base datatype */
tid2=H5Tget_super(mtid);
CHECK(tid2, FAIL, "H5Tget_super");
if((ret=H5Tequal(tid2,H5T_STD_I32LE))<=0)
TestErrPrintf("Compound data type is incorrect!, ret=%d\n",(int)ret);
ret=H5Tclose(tid2);
CHECK(ret, FAIL, "H5Tclose");
ret=H5Tclose(mtid);
CHECK(ret, FAIL, "H5Tclose");
/* Check the 4th field's name */
mname=H5Tget_member_name(tid1,3);
CHECK(mname, NULL, "H5Tget_member_name");
if(HDstrcmp(mname,"d")!=0)
TestErrPrintf("Compound field name doesn't match!, mname=%s\n",mname);
free(mname);
/* Check the 4th field's offset */
off=H5Tget_member_offset(tid1,3);
VERIFY(off, 36, "H5Tget_member_offset");
/* Check the 4th field's datatype */
mtid=H5Tget_member_type(tid1,3);
CHECK(mtid, FAIL, "H5Tget_member_type");
if((ret=H5Tequal(mtid,H5T_IEEE_F64LE))<=0)
TestErrPrintf("Compound data type is incorrect!, ret=%d\n",(int)ret);
ret=H5Tclose(mtid);
CHECK(mtid, FAIL, "H5Tclose");
/* Close the datatype */
ret = H5Tclose(tid1);
CHECK_I(ret, "H5Tclose");
/* Close the dataset */
ret = H5Dclose(dataset);
CHECK_I(ret, "H5Dclose");
/* Close the file */
ret = H5Fclose(fid1);
CHECK_I(ret, "H5Fclose");
}
else
printf("***cannot open the pre-created compound datatype test file (%s)\n",testfile);
} /* end test_compat() */
/****************************************************************
**
** test_array(): Main array datatype testing routine.
**
****************************************************************/
void
test_array(void)
{
/* Output message about test being performed */
MESSAGE(5, ("Testing Array Datatypes\n"));
/* These tests use the same file... */
test_array_atomic_1d(); /* Test 1-D array of atomic datatypes */
test_array_atomic_3d(); /* Test 3-D array of atomic datatypes */
test_array_array_atomic(); /* Test 1-D array of 2-D arrays of atomic datatypes */
test_array_compound_atomic(); /* Test 1-D array of compound datatypes (with no array fields) */
test_array_compound_array(); /* Test 1-D array of compound datatypes (with array fields) */
test_array_vlen_atomic(); /* Test 1-D array of atomic VL datatypes */
test_array_vlen_array(); /* Test 1-D array of 1-D array VL datatypes */
test_array_funcs(); /* Test type functions with array types */
test_array_bkg(); /* Read compound datatype with array fields and background fields read */
/* This test uses a custom file */
test_compat(); /* Test compatibility changes for compound datatype fields */
} /* test_array() */
/*-------------------------------------------------------------------------
* Function: cleanup_array
*
* Purpose: Cleanup temporary test files
*
* Return: none
*
* Programmer: Quincey Koziol
* June 8, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
void
cleanup_array(void)
{
remove(FILENAME);
}
Reference in New Issue View Git Blame Copy Permalink