mirror of
https://github.com/HDFGroup/hdf5.git
synced 2025-02-17 16:10:24 +08:00
701966ef0f
Bug fix
Description:
When the Fortran interface was used on the Linux systems, there were segmentation
errors. This was caused because two arrays were being accessed outside of their
bounds and because the trace type parameters were specified inccorectly in
the ProcTrace.inc file. There were also problems on some systems caused because
the long names of HDF entries resulted in trace IDs which were too long.
Solution:
The lines where arrays were being accessed outside of their bounds were changed.
The code in the Makefile.in and the PabloSedscr sed script file were changed so
that the tracetype parameters were generated correctly. The PabloSedscr file was
also modified to eliminate trace IDs for individual entries.
Platforms tested:
LINUX, IRIX64, IBM SP2
260 lines
8.3 KiB
Makefile
260 lines
8.3 KiB
Makefile
## HDF5 Library Makefile(.in)
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##
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## Copyright (C) 1997 National Center for Supercomputing Applications.
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## All rights reserved.
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##
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##
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top_srcdir=@top_srcdir@
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top_builddir=..
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srcdir=@srcdir@
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@COMMENCE@
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TRACE=perl ../bin/trace
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.SUFFIXES: .c .o .lo .x
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###############################################################################
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## MODIFICATONS FOR CREATING THE PABLO INSTRUMENTED LIBRARY libhdf5-inst.a
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## For Pablo instrumenation of parallel code, remove the # from in front of
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## PABLO_MPIO_FLAGS.
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## Set PABLO_INC equal to the path of the include directory for the Pablo
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## TraceLibrary. This can be done by setting the environment variable
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## PABLO_TRACELIB to the path where the Pablo Trace Library ins installed.
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###############################################################################
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#PABLO_MPIO_FLAGS = -DH5_HAVE_PARALLEL -DH5_HAVE_MPIOTRACE
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PABLO_INC = $(PABLO_TRACELIB)/include
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PABLO_FLAGS = -I../src -I$(PABLO_INC) -DH5_HAVE_PABLO $(PABLO_MPIO_FLAGS)
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CPPFLAGS=-I. -I. -I../src -DH5_DEBUG_API -DNDEBUG $(PABLO_FLAGS) -D$(PABLO_BLD)_BUILD
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## This is our main target:
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LIB=libhdf5-inst.a
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SRCDIRS = ./. ../src/.
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# Took out the GNU'isms for the SRCFILES and LIB_SRC variables.
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# This may cause problems in two ways: any changes to the SRCDIRS variable
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# should be make to the SRCFILES macro also and the LIB_SRC variable now has
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# directory paths included in it (which may cause problems somewhere). - QAK
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LIB_SRC= \
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H5.c H5FDmulti.c H5HG.c H5Oname.c H5T.c \
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H5A.c H5FDsec2.c H5HL.c H5Onull.c H5TB.c \
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H5AC.c H5FDsrb.c H5I.c H5Osdspace.c H5TS.c \
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H5B.c H5FDstdio.c H5MF.c H5Oshared.c H5Tbit.c \
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H5D.c H5FDstream.c H5MM.c H5Ostab.c H5Tconv.c \
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H5E.c H5FL.c H5O.c H5P.c H5Tinit.c \
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H5F.c H5Farray.c H5Oattr.c H5R.c H5Tvlen.c \
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H5FD.c H5Fcontig.c H5Ocomp.c H5S.c H5V.c \
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H5FDcore.c H5Fistore.c H5Ocont.c H5Sall.c H5Z.c \
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H5FDdpss.c H5Fseq.c H5Odtype.c H5Shyper.c H5Zdeflate.c \
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H5FDfamily.c H5G.c H5Oefl.c H5Smpio.c H5detect.c \
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H5FDgass.c H5Gent.c H5Ofill.c H5Snone.c \
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H5FDlog.c H5Gnode.c H5Olayout.c H5Spoint.c \
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H5FDmpio.c H5Gstab.c H5Omtime.c H5Sselect.c
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PABLO_OBJ = PabloHDF.o PabloHDF_RT.o PabloHDF_SDDF.o PabloHDF_MPIO.o
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LIB_XOBJ = $(LIB_SRC:.c=.x)
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LIB_COBJ = $(LIB_XOBJ:.x=.o)
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LIB_OBJ = $(PABLO_OBJ) $(LIB_COBJ)
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.c.x:
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$(CC) $(CFLAGS) $(CPPFLAGS) -c ../src/$*.c -o $*.o
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cp $*.o $@
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# 'vpath' directive is only supported in gmake, take out - QAK
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#vpath %.c $(shell echo $(SRCDIRS) | sed 's/ /:/g')
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## Pablo header files (to be installed)...
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PABLO_HDR = HDFentryNames.h HDFidList.h ProcIDs.h HDFTrace.h ProcTrace.h \
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ProcTrace.inc
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##------------------------------------------------------------ -*- makefile -*-
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## The following section of this makefile comes from the
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## `./config/conclude' file which was generated with config.status
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## from `./config/conclude.in'.
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##-----------------------------------------------------------------------------
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## This is the target for the library described in the main body of the
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## makefile.
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##
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lib: $(LIB)
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$(LIB): $(PABLO_OBJ) $(LIB_XOBJ)
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$(AR) -rc $@ $(LIB_OBJ)
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$(RANLIB) $@
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##
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## Dummy this out so that there is no redundant make of the library
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##
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progs:
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## Build a tags file in this directory.
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TAGS: $(LIB_SRC)
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$(RM) $@
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-etags $(LIB_SRC)
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##
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## Dummy this out so that there is no redundant make of the library
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##
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tests:
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## Install the library, the public header files, and programs.
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install: $(LIB)
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@test -d $(libdir) || mkdir $(libdir)
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@for f in X $(LIB); do \
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if test $$f != X; then \
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(set -x; $(INSTALL_DATA) $$f $(libdir)/. || exit 1); \
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fi; \
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done
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@test -d $(includedir) || mkdir $(includedir)
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@for f in X $(PABLO_HDR); do \
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if test $$f != X; then \
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(set -x; $(INSTALL_DATA) $$f $(includedir)/. || exit 1); \
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fi \
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done
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## Removes those things that `make install' (would have) installed.
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uninstall:
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@if test "X$(LIB)" != X; then \
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set -x; cd $(libdir) && $(RM) $(LIB); \
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fi
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## Removes temporary files without removing the final target files. That is,
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## remove things like object files but not libraries or executables.
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##
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mostlyclean:
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$(RM) $(LIB_OBJ) $(LIB_XOBJ) $(TEST_OBJ) $(PROG_OBJ) $(MOSTLYCLEAN)
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## Like `mostlyclean' except it also removes the final targets: things like
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## libraries and executables. This target doesn't remove any file that
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## is part of the HDF5 distribution.
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##
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clean: mostlyclean
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$(RM) $(LIB) $(TESTS) $(PROGS) $(CLEAN) $(PABLO_CLEAN) H*.c
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## Like `clean' except it also removes files that were created by running
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## configure. If you've unpacked the source and built HDF5 without creating
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## any other files, then `make distclean' will leave only the files that were
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## in the distribution.
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##
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distclean: clean
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$(RM) .depend TAGS *~ core *.core *.bak *.old *.new $(DISTCLEAN)
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@if test -f $(srcdir)/Makefile.in; then \
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(set -x; $(RM) Makefile); \
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fi
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## Like `distclean' except it deletes all files that can be regenerated from
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## the makefile, including those generated from autoheader and autoconf.
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##
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maintainer-clean: distclean
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$(RM) *~ core core.* *.core *.bak *.contrib gmon.out
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.c.lo:
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@$(LT_COMPILE) $(CFLAGS) $(CPPFLAGS) -c ../src/$*.c $<
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PABLO_INCLUDES = HDFentryNames.h HDFidList.h ProcIDs.h HDFTrace.h ProcTrace.h \
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ProcTrace.inc
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PABLO_CLEAN = HDFentryNames.h HDFidList.h ProcMasks.h HDFentries.txt \
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ProcTrace.inc
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HDFentries.txt: ../src/*.c
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grep "FUNC_ENTER[_INIT ]*(" ../src/*.c | \
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sed "s/.*FUNC_ENTER[_INIT ]*(//;s/[,)].*//" | sort -u > $@
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HDFentryNames.h: HDFentries.txt
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sed "s/.*/\"&\",/" $? > $@
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HDFidList.h: HDFentries.txt
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sed "s/.*/ID_&,/" $? > $@
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echo ID_ALLHDF, >> $@
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grep "#define[ ]*PABLO_MASK" ../src/*.c | \
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sed "s/.*H5/ID_H5/;s/mask.*/c,/" | sort -u >> $@
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ProcMasks.h: ../src/*.c
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grep "#define[ ]*PABLO_MASK" ../src/*.c | \
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sed "s/.*[ ]H5/H5/;s/_mask.*//;s/.*/#define &_mask ID_&_c/" >$@
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ProcIDs.h: HDFidList.h ProcMasks.h
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ProcTrace.inc: HDFidList.h
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sed "=" $? | sed -f PabloSedscr > $@
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PabloHDF.o: PabloHDF.c $(PABLO_INCLUDES)
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$(CC) -g $(CFLAGS) $(CPPFLAGS) $(PABLO_FLAGS) -c $<
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PabloHDF_RT.o: PabloHDF_RT.c $(PABLO_INCLUDES)
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$(CC) $(CFLAGS) $(CPPFLAGS) $(PABLO_FLAGS) -c $<
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PabloHDF_SDDF.o: PabloHDF_SDDF.c $(PABLO_INCLUDES)
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$(CC) $(CFLAGS) $(CPPFLAGS) $(PABLO_FLAGS) -c $<
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PabloHDF_MPIO.o: PabloHDF_MPIO.c $(PABLO_INCLUDES)
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$(CC) $(CFLAGS) $(CPPFLAGS) $(PABLO_FLAGS) -c $<
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PabloHDFff.o: PabloHDFff.f $(PABLO_INCLUDES)
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$(F77) $(FFLAGS) -O -c PabloHDFff.f
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H5.c: ../src/H5.c
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H5A.c: ../src/H5A.c
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H5AC.c: ../src/H5AC.c
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H5B.c: ../src/H5B.c
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H5D.c: ../src/H5D.c
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H5E.c: ../src/H5E.c
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H5F.c: ../src/H5F.c
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H5FD.c: ../src/H5FD.c
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H5FDcore.c: ../src/H5FDcore.c
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H5FDdpss.c: ../src/H5FDdpss.c
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H5FDfamily.c: ../src/H5FDfamily.c
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H5FDgass.c: ../src/H5FDgass.c
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H5FDlog.c: ../src/H5FDlog.c
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H5FDmpio.c: ../src/H5FDmpio.c
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H5FDmulti.c: ../src/H5FDmulti.c
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H5FDsec2.c: ../src/H5FDsec2.c
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H5FDsrb.c: ../src/H5FDsrb.c
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H5FDstdio.c: ../src/H5FDstdio.c
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H5FDstream.c: ../src/H5FDstream.c
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H5FL.c: ../src/H5FL.c
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H5Farray.c: ../src/H5Farray.c
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H5Fcontig.c: ../src/H5Fcontig.c
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H5Fistore.c: ../src/H5Fistore.c
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H5Fseq.c: ../src/H5Fseq.c
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H5G.c: ../src/H5G.c
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H5Gent.c: ../src/H5Gent.c
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H5Gnode.c: ../src/H5Gnode.c
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H5Gstab.c: ../src/H5Gstab.c
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H5HG.c: ../src/H5HG.c
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H5HL.c: ../src/H5HL.c
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H5I.c: ../src/H5I.c
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H5MF.c: ../src/H5MF.c
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H5MM.c: ../src/H5MM.c
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H5O.c: ../src/H5O.c
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H5Oattr.c: ../src/H5Oattr.c
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H5Ocomp.c: ../src/H5Ocomp.c
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H5Ocont.c: ../src/H5Ocont.c
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H5Odtype.c: ../src/H5Odtype.c
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H5Oefl.c: ../src/H5Oefl.c
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H5Ofill.c: ../src/H5Ofill.c
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H5Olayout.c: ../src/H5Olayout.c
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H5Omtime.c: ../src/H5Omtime.c
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H5Oname.c: ../src/H5Oname.c
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H5Onull.c: ../src/H5Onull.c
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H5Osdspace.c: ../src/H5Osdspace.c
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H5Oshared.c: ../src/H5Oshared.c
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H5Ostab.c: ../src/H5Ostab.c
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H5P.c: ../src/H5P.c
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H5R.c: ../src/H5R.c
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H5S.c: ../src/H5S.c
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H5Sall.c: ../src/H5Sall.c
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H5Shyper.c: ../src/H5Shyper.c
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H5Smpio.c: ../src/H5Smpio.c
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H5Snone.c: ../src/H5Snone.c
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H5Spoint.c: ../src/H5Spoint.c
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H5Sselect.c: ../src/H5Sselect.c
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H5T.c: ../src/H5T.c
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H5TB.c: ../src/H5TB.c
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H5TS.c: ../src/H5TS.c
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H5Tbit.c: ../src/H5Tbit.c
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H5Tconv.c: ../src/H5Tconv.c
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H5Tinit.c: ../src/H5Tinit.c
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H5Tvlen.c: ../src/H5Tvlen.c
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H5V.c: ../src/H5V.c
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H5Z.c: ../src/H5Z.c
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H5Zdeflate.c: ../src/H5Zdeflate.c
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H5detect.c: ../src/H5detect.c
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