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trunk: Description: Continued rearranging the classes to model the relationship of HDF5 objects more accurately. The changes included: - in the baseclass list of Attribute, changed "public IdComponent" to "public H5Location", because location sometime can be specified with attribute - moved H5A wrappers in H5Location to H5Object because H5A functions can't be called on attribute id - removed the stubs Attribute::iterateAttrs and Attribute::renameAttr - removed Attribute::getFileName and Attribute::flush, because H5Location has them - result of the modified partial class diagram, regarding Attribute IdComponent | H5Location AbstractDs / \ / H5Object Attribute Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
1499 lines
60 KiB
C++
1499 lines
60 KiB
C++
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the files COPYING and Copyright.html. COPYING can be found at the root *
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* of the source code distribution tree; Copyright.html can be found at the *
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* root level of an installed copy of the electronic HDF5 document set and *
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* is linked from the top-level documents page. It can also be found at *
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* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
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* access to either file, you may request a copy from help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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#ifdef OLD_HEADER_FILENAME
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#include <iostream.h>
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#else
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#include <iostream>
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#endif
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#include <string>
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#include "H5Include.h"
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#include "H5Exception.h"
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#include "H5IdComponent.h"
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#include "H5PropList.h"
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#include "H5Location.h"
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#include "H5Object.h"
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#include "H5AbstractDs.h"
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#include "H5FaccProp.h"
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#include "H5FcreatProp.h"
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#include "H5OcreatProp.h"
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#include "H5DcreatProp.h"
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#include "H5DxferProp.h"
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#include "H5DataSpace.h"
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#include "H5DataSet.h"
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#include "H5Attribute.h"
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#include "H5Group.h"
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#include "H5File.h"
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#include "H5Alltypes.h"
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#include "H5private.h" // for HDstrcpy
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#ifndef H5_NO_NAMESPACE
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namespace H5 {
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#ifndef H5_NO_STD
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using std::cerr;
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using std::endl;
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#endif // H5_NO_STD
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#endif
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//--------------------------------------------------------------------------
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// Function: Group default constructor
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///\brief Default constructor: creates a stub Group.
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// Programmer Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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Group::Group() : H5Object(), id(H5I_INVALID_HID) {}
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//--------------------------------------------------------------------------
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// Function: Group copy constructor
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///\brief Copy constructor: makes a copy of the original Group object.
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///\param original - IN: Original group to copy
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// Programmer Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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Group::Group(const Group& original) : H5Object(), id(original.id)
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{
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incRefCount(); // increment number of references to this id
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}
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//--------------------------------------------------------------------------
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// Function: Group::getLocId
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///\brief Returns the id of this group.
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///\return Id of this group
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// Programmer Binh-Minh Ribler - 2000
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// Deprecated:
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// After HDFFV-9920, the Group's methods can use getId() and getLocId()
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// is kept for backward compatibility. Aug 18, 2016 -BMR
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//--------------------------------------------------------------------------
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hid_t Group::getLocId() const
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{
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return( getId() );
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}
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//--------------------------------------------------------------------------
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// Function: Group overloaded constructor
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///\brief Creates a Group object using the id of an existing group.
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///\param existing_id - IN: Id of an existing group
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// Programmer Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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Group::Group(const hid_t existing_id) : H5Object(), id(existing_id)
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{
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incRefCount(); // increment number of references to this id
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}
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//--------------------------------------------------------------------------
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// Function: Group overload constructor - dereference
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///\brief Given a reference, ref, to an hdf5 group, creates a Group object
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///\param loc - IN: Specifying location referenced object is in
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///\param ref - IN: Reference pointer
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///\param ref_type - IN: Reference type - default to H5R_OBJECT
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///\param plist - IN: Property list - default to PropList::DEFAULT
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///\exception H5::ReferenceException
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///\par Description
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/// \c obj can be DataSet, Group, or named DataType, that
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/// is a datatype that has been named by DataType::commit.
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// Programmer Binh-Minh Ribler - Oct, 2006
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//--------------------------------------------------------------------------
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Group::Group(const H5Location& loc, const void* ref, H5R_type_t ref_type, const PropList& plist) : H5Object(), id(H5I_INVALID_HID)
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{
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id = H5Location::p_dereference(loc.getId(), ref, ref_type, plist, "constructor - by dereference");
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}
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//--------------------------------------------------------------------------
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// Function: Group overload constructor - dereference
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///\brief Given a reference, ref, to an hdf5 group, creates a Group object
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///\param attr - IN: Specifying location where the referenced object is in
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///\param ref - IN: Reference pointer
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///\param ref_type - IN: Reference type - default to H5R_OBJECT
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///\param plist - IN: Property list - default to PropList::DEFAULT
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///\exception H5::ReferenceException
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// Programmer Binh-Minh Ribler - Oct, 2006
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//--------------------------------------------------------------------------
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Group::Group(const Attribute& attr, const void* ref, H5R_type_t ref_type, const PropList& plist) : H5Object(), id(H5I_INVALID_HID)
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{
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id = H5Location::p_dereference(attr.getId(), ref, ref_type, plist, "constructor - by dereference");
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}
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//--------------------------------------------------------------------------
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// Function: Group::getId
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///\brief Get the id of this group
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///\return Group identifier
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// Modification:
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// May 2008 - BMR
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// Class hierarchy is revised to address bugzilla 1068. Class
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// AbstractDS and Attribute are moved out of H5Object. In
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// addition, member IdComponent::id is moved into subclasses, and
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// IdComponent::getId now becomes pure virtual function.
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// Programmer Binh-Minh Ribler - May, 2008
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//--------------------------------------------------------------------------
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hid_t Group::getId() const
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{
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return(id);
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}
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#ifndef DOXYGEN_SHOULD_SKIP_THIS
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//--------------------------------------------------------------------------
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// Function: Group::p_setId
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///\brief Sets the identifier of this object to a new value.
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///
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///\exception H5::IdComponentException when the attempt to close the HDF5
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/// object fails
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// Description:
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// The underlaying reference counting in the C library ensures
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// that the current valid id of this object is properly closed.
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// Then the object's id is reset to the new id.
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// Programmer Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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void Group::p_setId(const hid_t new_id)
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{
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// handling references to this old id
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try {
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close();
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}
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catch (Exception& close_error) {
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throwException("Group::p_setId", close_error.getDetailMsg());
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}
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// reset object's id to the given id
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id = new_id;
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}
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#endif // DOXYGEN_SHOULD_SKIP_THIS
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//--------------------------------------------------------------------------
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// Function: Group::close
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///\brief Closes this group.
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///
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///\exception H5::GroupIException
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// Programmer Binh-Minh Ribler - Mar 9, 2005
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//--------------------------------------------------------------------------
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void Group::close()
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{
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if (p_valid_id(id))
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{
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herr_t ret_value = H5Gclose( id );
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if( ret_value < 0 )
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{
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throwException("Group::close", "H5Gclose failed");
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}
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// reset the id
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id = H5I_INVALID_HID;
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}
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}
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//--------------------------------------------------------------------------
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// Function: Group::throwException
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///\brief Throws H5::GroupIException.
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///\param func_name - Name of the function where failure occurs
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///\param msg - Message describing the failure
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///\exception H5::GroupIException
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// Description
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// This function is used in CommonFG implementation so that
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// proper exception can be thrown for file or group. The
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// argument func_name is a member of CommonFG and "Group::"
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// will be inserted to indicate the function called is an
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// implementation of Group.
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// Programmer Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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void Group::throwException(const H5std_string& func_name, const H5std_string& msg) const
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{
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H5std_string full_name = func_name;
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full_name.insert(0, "Group::");
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throw GroupIException(full_name, msg);
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}
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//--------------------------------------------------------------------------
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// Function: Group destructor
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///\brief Properly terminates access to this group.
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// Programmer Binh-Minh Ribler - 2000
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// Modification
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// - Replaced resetIdComponent() with decRefCount() to use C
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// library ID reference counting mechanism - BMR, Feb 20, 2005
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// - Replaced decRefCount with close() to let the C library
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// handle the reference counting - BMR, Jun 1, 2006
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//--------------------------------------------------------------------------
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Group::~Group()
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{
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try {
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close();
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}
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catch (Exception& close_error) {
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cerr << "Group::~Group - " << close_error.getDetailMsg() << endl;
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}
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}
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// From H5CommonFG.cpp
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// Notes with "***Updated" are new and for Group.cpp
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// Original notes are from December 2000
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//
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// There are a few comments that are common to most of the functions
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// defined in this file so they are listed here.
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// - getLocId is called by all functions, that call a C API, to get
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// the location id, which can be either a file id or a group id.
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// This function is pure virtual and it's up to H5File and Group
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// to call the right getId() - although, as the structure of the
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// library at this time, getId() is basically the IdComponent::getId()
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// ***Updated: after the classes are rearranged (HDFFV-9920), functions
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// in CommonFG are moved to Group, and they can call getId()
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// instead of getLocId(). getLocId() is kept for backward
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// compatibility on user applications. Aug 18, 2016 -BMR
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// - when a failure returned by the C API, the functions will call
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// throwException, which is a pure virtual function and is implemented
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// by H5File to throw a FileIException and by Group to throw a
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// GroupIException.
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// ***Updated: after HDFFV-9920, methods in class Group use throwException
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// to distinguish the FileIException and GroupIException. CommonFG is no
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// longer used in the library. Aug 18, 2016 -BMR
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//--------------------------------------------------------------------------
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// Function: Group::createGroup
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///\brief Creates a new group at this location which can be a file
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/// or another group.
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///\param name - IN: Name of the group to create
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///\param size_hint - IN: Indicates the number of bytes to reserve for
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/// the names that will appear in the group
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///\return Group instance
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///\exception H5::FileIException or H5::GroupIException
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///\par Description
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/// The optional \a size_hint specifies how much file space to
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/// reserve for storing the names that will appear in this new
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/// group. If a non-positive value is provided for the \a size_hint
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/// then a default size is chosen.
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// Programmer Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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Group Group::createGroup( const char* name, size_t size_hint ) const
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{
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// Group creation property list for size hint
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hid_t gcpl_id = 0;
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// Set the local heap size hint
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if (size_hint > 0)
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{
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// If the creation of the property list failed, throw an exception
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if ((gcpl_id = H5Pcreate(H5P_GROUP_CREATE)) < 0)
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throwException("createGroup", "H5Pcreate failed");
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if (H5Pset_local_heap_size_hint(gcpl_id, size_hint) < 0) {
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H5Pclose(gcpl_id);
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throwException("createGroup", "H5Pset_local_heap_size_hint failed");
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}
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}
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// Call C routine H5Gcreate2 to create the named group, giving the
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// location id which can be a file id or a group id
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hid_t group_id = H5Gcreate2(getId(), name, H5P_DEFAULT, gcpl_id, H5P_DEFAULT );
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// Close the group creation property list, if necessary
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if(gcpl_id > 0)
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H5Pclose(gcpl_id);
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// If the creation of the group failed, throw an exception
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if( group_id < 0 )
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throwException("createGroup", "H5Gcreate2 failed");
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// No failure, create and return the Group object
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Group group;
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group.p_setId(group_id);
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// CommonFG *ptr = &group;
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// ptr->p_setId(group_id);
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return( group );
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}
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//--------------------------------------------------------------------------
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// Function: Group::createGroup
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///\brief This is an overloaded member function, provided for convenience.
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/// It differs from the above function in that it takes an
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/// \c H5std_string for \a name.
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// Programmer Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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Group Group::createGroup( const H5std_string& name, size_t size_hint ) const
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{
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return( createGroup( name.c_str(), size_hint ));
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}
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//--------------------------------------------------------------------------
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// Function: Group::openGroup
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///\brief Opens an existing group in a location which can be a file
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/// or another group.
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///\param name - IN: Name of the group to open
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///\return Group instance
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///\exception H5::FileIException or H5::GroupIException
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// Programmer Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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Group Group::openGroup( const char* name ) const
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{
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// Call C routine H5Gopen2 to open the named group, giving the
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// location id which can be a file id or a group id
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hid_t group_id = H5Gopen2(getId(), name, H5P_DEFAULT );
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// If the opening of the group failed, throw an exception
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if( group_id < 0 )
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throwException("openGroup", "H5Gopen2 failed");
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// No failure, create and return the Group object
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Group group;
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group.p_setId(group_id);
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// CommonFG *ptr = &group;
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// ptr->p_setId(group_id);
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return( group );
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}
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//--------------------------------------------------------------------------
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// Function: Group::openGroup
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///\brief This is an overloaded member function, provided for convenience.
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/// It differs from the above function in that it takes an
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/// \c H5std_string for \a name.
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// Programmer Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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Group Group::openGroup( const H5std_string& name ) const
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{
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return( openGroup( name.c_str() ));
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}
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//--------------------------------------------------------------------------
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// Function: Group::createDataSet
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///\brief Creates a new dataset at this location.
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///\param name - IN: Name of the dataset to create
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///\param data_type - IN: Datatype of the dataset
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///\param data_space - IN: Dataspace for the dataset
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///\param create_plist - IN: Creation properly list for the dataset
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///\return DataSet instance
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///\exception H5::FileIException or H5::GroupIException
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// Programmer Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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DataSet Group::createDataSet( const char* name, const DataType& data_type, const DataSpace& data_space, const DSetCreatPropList& create_plist ) const
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{
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//cerr << "createDataSet( const char* name" << endl;
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// Obtain identifiers for C API
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hid_t type_id = data_type.getId();
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hid_t space_id = data_space.getId();
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hid_t create_plist_id = create_plist.getId();
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// Call C routine H5Dcreate2 to create the named dataset
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hid_t dataset_id = H5Dcreate2(getId(), name, type_id, space_id, H5P_DEFAULT, create_plist_id, H5P_DEFAULT );
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//cerr << " H5Dcreate2 returns dataset_id " << dataset_id << endl;
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// If the creation of the dataset failed, throw an exception
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if( dataset_id < 0 )
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throwException("createDataSet", "H5Dcreate2 failed");
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// No failure, create and return the DataSet object
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DataSet dataset;
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f_DataSet_setId(&dataset, dataset_id);
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return( dataset );
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}
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//--------------------------------------------------------------------------
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// Function: Group::createDataSet
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///\brief This is an overloaded member function, provided for convenience.
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/// It differs from the above function in that it takes an
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/// \c H5std_string for \a name.
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// Programmer Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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DataSet Group::createDataSet( const H5std_string& name, const DataType& data_type, const DataSpace& data_space, const DSetCreatPropList& create_plist ) const
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{
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//cerr << "createDataSet( const H5std_string& name" << endl;
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return( createDataSet( name.c_str(), data_type, data_space, create_plist ));
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}
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//--------------------------------------------------------------------------
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// Function: Group::openDataSet
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///\brief Opens an existing dataset at this location.
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///\param name - IN: Name of the dataset to open
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///\return DataSet instance
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///\exception H5::FileIException or H5::GroupIException
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// Programmer Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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DataSet Group::openDataSet( const char* name ) const
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{
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// Call C function H5Dopen2 to open the specified dataset, giving
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// the location id and the dataset's name
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hid_t dataset_id = H5Dopen2(getId(), name, H5P_DEFAULT );
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// If the dataset's opening failed, throw an exception
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if(dataset_id < 0)
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throwException("openDataSet", "H5Dopen2 failed");
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// No failure, create and return the DataSet object
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DataSet dataset;
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f_DataSet_setId(&dataset, dataset_id);
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return( dataset );
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}
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//--------------------------------------------------------------------------
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// Function: Group::openDataSet
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///\brief This is an overloaded member function, provided for convenience.
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/// It differs from the above function in that it takes an
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/// \c H5std_string for \a name.
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// Programmer Binh-Minh Ribler - 2000
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//--------------------------------------------------------------------------
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DataSet Group::openDataSet( const H5std_string& name ) const
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{
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return( openDataSet( name.c_str() ));
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}
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//--------------------------------------------------------------------------
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// Function: Group::link
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///\brief Creates a link of the specified type from \a new_name to
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/// \a curr_name.
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///\param link_type - IN: Link type; possible values are
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/// \li \c H5G_LINK_HARD
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/// \li \c H5G_LINK_SOFT
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///\param curr_name - IN: Name of the existing object if link is a hard
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/// link; can be anything for the soft link
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///\param new_name - IN: New name for the object
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///\exception H5::FileIException or H5::GroupIException
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///\par Description
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/// Note that both names are interpreted relative to the
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/// specified location.
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/// For information on creating hard link and soft link, please
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/// refer to the C layer Reference Manual at:
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/// http://hdfgroup.org/HDF5/doc/RM/RM_H5L.html#Link-CreateHard and
|
|
/// http://hdfgroup.org/HDF5/doc/RM/RM_H5L.html#Link-CreateSoft
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
// Modification
|
|
// 2007: QAK modified to use H5L APIs - BMR
|
|
//--------------------------------------------------------------------------
|
|
void Group::link( H5L_type_t link_type, const char* curr_name, const char* new_name ) const
|
|
{
|
|
herr_t ret_value = -1;
|
|
|
|
switch(link_type) {
|
|
case H5L_TYPE_HARD:
|
|
ret_value = H5Lcreate_hard(getId(), curr_name, H5L_SAME_LOC, new_name, H5P_DEFAULT, H5P_DEFAULT );
|
|
break;
|
|
|
|
case H5L_TYPE_SOFT:
|
|
ret_value = H5Lcreate_soft( curr_name,getId(), new_name, H5P_DEFAULT, H5P_DEFAULT );
|
|
break;
|
|
|
|
case H5L_TYPE_ERROR:
|
|
case H5L_TYPE_EXTERNAL:
|
|
case H5L_TYPE_MAX:
|
|
default:
|
|
throwException("link", "unknown link type");
|
|
break;
|
|
} /* end switch */
|
|
|
|
if( ret_value < 0 )
|
|
throwException("link", "creating link failed");
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::link
|
|
///\brief This is an overloaded member function, provided for convenience.
|
|
/// It differs from the above function in that it takes an
|
|
/// \c H5std_string for \a curr_name and \a new_name.
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
void Group::link( H5L_type_t link_type, const H5std_string& curr_name, const H5std_string& new_name ) const
|
|
{
|
|
link( link_type, curr_name.c_str(), new_name.c_str() );
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::unlink
|
|
///\brief Removes the specified name at this location.
|
|
///\param name - IN: Name of the object to be removed
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
// Modification
|
|
// 2007: QAK modified to use H5L APIs - BMR
|
|
//--------------------------------------------------------------------------
|
|
void Group::unlink( const char* name ) const
|
|
{
|
|
herr_t ret_value = H5Ldelete(getId(), name, H5P_DEFAULT );
|
|
if( ret_value < 0 )
|
|
throwException("unlink", "H5Ldelete failed");
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::unlink
|
|
///\brief This is an overloaded member function, provided for convenience.
|
|
/// It differs from the above function in that it takes an
|
|
/// \c H5std_string for \a name.
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
void Group::unlink( const H5std_string& name ) const
|
|
{
|
|
unlink( name.c_str() );
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::move
|
|
///\brief Renames an object at this location.
|
|
///\param src - IN: Object's original name
|
|
///\param dst - IN: Object's new name
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
///\note
|
|
/// Exercise care in moving groups as it is possible to render
|
|
/// data in a file inaccessible with Group::move. Please refer
|
|
/// to the Group Interface in the HDF5 User's Guide for details at:
|
|
/// https://www.hdfgroup.org/HDF5/doc/UG/HDF5_Users_Guide-Responsive%20HTML5/index.html#t=HDF5_Users_Guide%2FGroups%2FHDF5_Groups.htm
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
// Modification
|
|
// 2007: QAK modified to use H5L APIs - BMR
|
|
//--------------------------------------------------------------------------
|
|
void Group::move( const char* src, const char* dst ) const
|
|
{
|
|
herr_t ret_value = H5Lmove(getId(), src, H5L_SAME_LOC, dst, H5P_DEFAULT, H5P_DEFAULT );
|
|
if( ret_value < 0 )
|
|
throwException("move", "H5Lmove failed");
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::move
|
|
///\brief This is an overloaded member function, provided for convenience.
|
|
/// It differs from the above function in that it takes an
|
|
/// \c H5std_string for \a src and \a dst.
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
void Group::move( const H5std_string& src, const H5std_string& dst ) const
|
|
{
|
|
move( src.c_str(), dst.c_str() );
|
|
}
|
|
|
|
#ifndef H5_NO_DEPRECATED_SYMBOLS
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::getObjinfo
|
|
///\brief Returns information about an object.
|
|
///\param name - IN: Name of the object
|
|
///\param follow_link - IN: Link flag
|
|
///\param statbuf - OUT: Buffer to return information about the object
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
///\par Description
|
|
/// For more information, please refer to the C layer Reference
|
|
/// Manual at:
|
|
/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5G.html#Group-GetObjinfo
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
void Group::getObjinfo( const char* name, hbool_t follow_link, H5G_stat_t& statbuf ) const
|
|
{
|
|
herr_t ret_value = H5Gget_objinfo(getId(), name, follow_link, &statbuf );
|
|
if( ret_value < 0 )
|
|
throwException("getObjinfo", "H5Gget_objinfo failed");
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::getObjinfo
|
|
///\brief This is an overloaded member function, provided for convenience.
|
|
/// It differs from the above function in that it takes an
|
|
/// \c H5std_string for \a name.
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
void Group::getObjinfo( const H5std_string& name, hbool_t follow_link, H5G_stat_t& statbuf ) const
|
|
{
|
|
getObjinfo( name.c_str(), follow_link, statbuf );
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::getObjinfo
|
|
///\brief This is an overloaded member function, provided for convenience.
|
|
/// It differs from the above functions in that it doesn't have
|
|
/// the paramemter \a follow_link.
|
|
// Programmer Binh-Minh Ribler - Nov, 2005
|
|
// Note: need to modify to use H5Oget_info and H5Lget_info - BMR
|
|
//--------------------------------------------------------------------------
|
|
void Group::getObjinfo( const char* name, H5G_stat_t& statbuf ) const
|
|
{
|
|
herr_t ret_value = H5Gget_objinfo(getId(), name, 0, &statbuf );
|
|
if( ret_value < 0 )
|
|
throwException("getObjinfo", "H5Gget_objinfo failed");
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::getObjinfo
|
|
///\brief This is an overloaded member function, provided for convenience.
|
|
/// It differs from the above function in that it takes an
|
|
/// \c H5std_string for \a name.
|
|
// Programmer Binh-Minh Ribler - Nov, 2005
|
|
//--------------------------------------------------------------------------
|
|
void Group::getObjinfo( const H5std_string& name, H5G_stat_t& statbuf ) const
|
|
{
|
|
getObjinfo( name.c_str(), statbuf );
|
|
}
|
|
#endif /* H5_NO_DEPRECATED_SYMBOLS */
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::getLinkval
|
|
///\brief Returns the name of the object that the symbolic link points to.
|
|
///\param name - IN: Symbolic link to the object
|
|
///\param size - IN: Maximum number of characters of value to be returned
|
|
///\return Name of the object
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
H5std_string Group::getLinkval( const char* name, size_t size ) const
|
|
{
|
|
H5L_info_t linkinfo;
|
|
char *value_C; // value in C string
|
|
size_t val_size = size;
|
|
H5std_string value = "";
|
|
herr_t ret_value;
|
|
|
|
// if user doesn't provide buffer size, determine it
|
|
if (size == 0)
|
|
{
|
|
ret_value = H5Lget_info(getLocId(), name, &linkinfo, H5P_DEFAULT);
|
|
if( ret_value < 0 )
|
|
throwException("getLinkval", "H5Lget_info to find buffer size failed");
|
|
|
|
val_size = linkinfo.u.val_size;
|
|
}
|
|
|
|
// if link has value, retrieve the value, otherwise, return null string
|
|
if (val_size > 0)
|
|
{
|
|
value_C = new char[val_size+1]; // temporary C-string for C API
|
|
HDmemset(value_C, 0, val_size+1); // clear buffer
|
|
|
|
ret_value = H5Lget_val(getLocId(), name, value_C, val_size, H5P_DEFAULT);
|
|
if( ret_value < 0 )
|
|
{
|
|
delete []value_C;
|
|
throwException("getLinkval", "H5Lget_val failed");
|
|
}
|
|
|
|
value = H5std_string(value_C);
|
|
delete []value_C;
|
|
}
|
|
return(value);
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::getLinkval
|
|
///\brief This is an overloaded member function, provided for convenience.
|
|
/// It differs from the above function in that it takes an
|
|
/// \c H5std_string for \a name.
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
H5std_string Group::getLinkval( const H5std_string& name, size_t size ) const
|
|
{
|
|
return( getLinkval( name.c_str(), size ));
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::mount
|
|
///\brief Mounts the file \a child onto this group.
|
|
///\param name - IN: Name of the group
|
|
///\param child - IN: File to mount
|
|
///\param plist - IN: Property list to use
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
// Programmer Binh-Minh Ribler - 2014 (original 2000)
|
|
//--------------------------------------------------------------------------
|
|
void Group::mount(const char* name, const H5File& child, const PropList& plist ) const
|
|
{
|
|
// Obtain identifiers for C API
|
|
hid_t plist_id = plist.getId();
|
|
hid_t child_id = child.getId();
|
|
|
|
// Call C routine H5Fmount to do the mouting
|
|
herr_t ret_value = H5Fmount(getId(), name, child_id, plist_id );
|
|
|
|
// Raise exception if H5Fmount returns negative value
|
|
if( ret_value < 0 )
|
|
throwException("mount", "H5Fmount failed");
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::mount
|
|
// Purpose This is an overloaded member function, kept for backward
|
|
// compatibility. It differs from the above function in that it
|
|
// misses const's. This wrapper will be removed in future release.
|
|
// Param name - IN: Name of the group
|
|
// Param child - IN: File to mount
|
|
// Param plist - IN: Property list to use
|
|
// Exception H5::FileIException or H5::GroupIException
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
// Modification
|
|
// Modified to call its replacement. -BMR, 2014/04/16
|
|
// Removed from documentation. -BMR, 2016/03/07 1.8.17 and 1.10.0
|
|
// Removed from code. -BMR, 2016/08/11 1.8.18 and 1.10.1
|
|
//--------------------------------------------------------------------------
|
|
//void Group::mount(const char* name, H5File& child, PropList& plist) const
|
|
//{
|
|
// mount(name, child, plist);
|
|
//}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::mount
|
|
///\brief This is an overloaded member function, provided for convenience.
|
|
/// It takes an \c H5std_string for \a name.
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
void Group::mount(const H5std_string& name, const H5File& child, const PropList& plist) const
|
|
{
|
|
mount(name.c_str(), child, plist);
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::mount
|
|
// Purpose This is an overloaded member function, kept for backward
|
|
// compatibility. It differs from the above function in that it
|
|
// misses const's. This wrapper will be removed in future release.
|
|
// Programmer Binh-Minh Ribler - 2014
|
|
// Modification
|
|
// Modified to call its replacement. -BMR, 2014/04/16
|
|
// Removed from documentation. -BMR, 2016/03/07 1.8.17 and 1.10.0
|
|
// Removed from code. -BMR, 2016/08/11 1.8.18 and 1.10.1
|
|
//--------------------------------------------------------------------------
|
|
//void Group::mount(const H5std_string& name, H5File& child, PropList& plist) const
|
|
//{
|
|
// mount(name.c_str(), child, plist);
|
|
//}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::unmount
|
|
///\brief Unmounts the specified file.
|
|
///\param name - IN: Name of the file to unmount
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
void Group::unmount( const char* name ) const
|
|
{
|
|
// Call C routine H5Fmount to do the mouting
|
|
herr_t ret_value = H5Funmount(getId(), name );
|
|
|
|
// Raise exception if H5Funmount returns negative value
|
|
if( ret_value < 0 )
|
|
throwException("unmount", "H5Funmount failed");
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::unmount
|
|
///\brief This is an overloaded member function, provided for convenience.
|
|
/// It differs from the above function in that it takes an
|
|
/// \c H5std_string for \a name.
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
void Group::unmount( const H5std_string& name ) const
|
|
{
|
|
unmount( name.c_str() );
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::openDataType
|
|
///\brief Opens the named generic datatype at this location.
|
|
///\param name - IN: Name of the datatype to open
|
|
///\return DataType instance
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
DataType Group::openDataType( const char* name ) const
|
|
{
|
|
// Call C function H5Topen2 to open the named datatype in this group,
|
|
// given either the file or group id
|
|
hid_t type_id = H5Topen2(getLocId(), name, H5P_DEFAULT);
|
|
|
|
// If the datatype's opening failed, throw an exception
|
|
if( type_id < 0 )
|
|
throwException("openDataType", "H5Topen2 failed");
|
|
|
|
// No failure, create and return the DataType object
|
|
DataType data_type;
|
|
f_DataType_setId(&data_type, type_id);
|
|
return(data_type);
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::openDataType
|
|
///\brief This is an overloaded member function, provided for convenience.
|
|
/// It differs from the above function in that it takes an
|
|
/// \c H5std_string for \a name.
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
DataType Group::openDataType( const H5std_string& name ) const
|
|
{
|
|
return( openDataType( name.c_str()) );
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::openArrayType
|
|
///\brief Opens the named array datatype at this location.
|
|
///\param name - IN: Name of the array datatype to open
|
|
///\return ArrayType instance
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
// Programmer Binh-Minh Ribler - Jul, 2005
|
|
//--------------------------------------------------------------------------
|
|
ArrayType Group::openArrayType( const char* name ) const
|
|
{
|
|
// Call C function H5Topen2 to open the named datatype in this group,
|
|
// given either the file or group id
|
|
hid_t type_id = H5Topen2(getLocId(), name, H5P_DEFAULT);
|
|
|
|
// If the datatype's opening failed, throw an exception
|
|
if( type_id < 0 )
|
|
throwException("openArrayType", "H5Topen2 failed");
|
|
|
|
// No failure, create and return the ArrayType object
|
|
ArrayType array_type;
|
|
f_DataType_setId(&array_type, type_id);
|
|
return(array_type);
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::openArrayType
|
|
///\brief This is an overloaded member function, provided for convenience.
|
|
/// It differs from the above function in that it takes an
|
|
/// \c H5std_string for \a name.
|
|
// Programmer Binh-Minh Ribler - Jul, 2005
|
|
//--------------------------------------------------------------------------
|
|
ArrayType Group::openArrayType( const H5std_string& name ) const
|
|
{
|
|
return( openArrayType( name.c_str()) );
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::openCompType
|
|
///\brief Opens the named compound datatype at this location.
|
|
///\param name - IN: Name of the compound datatype to open
|
|
///\return CompType instance
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
CompType Group::openCompType( const char* name ) const
|
|
{
|
|
// Call C function H5Topen2 to open the named datatype in this group,
|
|
// given either the file or group id
|
|
hid_t type_id = H5Topen2(getLocId(), name, H5P_DEFAULT);
|
|
|
|
// If the datatype's opening failed, throw an exception
|
|
if( type_id < 0 )
|
|
throwException("openCompType", "H5Topen2 failed");
|
|
|
|
// No failure, create and return the CompType object
|
|
CompType comp_type;
|
|
f_DataType_setId(&comp_type, type_id);
|
|
return(comp_type);
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::openCompType
|
|
///\brief This is an overloaded member function, provided for convenience.
|
|
/// It differs from the above function in that it takes an
|
|
/// \c H5std_string for \a name.
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
CompType Group::openCompType( const H5std_string& name ) const
|
|
{
|
|
return( openCompType( name.c_str()) );
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::openEnumType
|
|
///\brief Opens the named enumeration datatype at this location.
|
|
///\param name - IN: Name of the enumeration datatype to open
|
|
///\return EnumType instance
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
EnumType Group::openEnumType( const char* name ) const
|
|
{
|
|
// Call C function H5Topen2 to open the named datatype in this group,
|
|
// given either the file or group id
|
|
hid_t type_id = H5Topen2(getLocId(), name, H5P_DEFAULT);
|
|
|
|
// If the datatype's opening failed, throw an exception
|
|
if( type_id < 0 )
|
|
throwException("openEnumType", "H5Topen2 failed");
|
|
|
|
// No failure, create and return the EnumType object
|
|
EnumType enum_type;
|
|
f_DataType_setId(&enum_type, type_id);
|
|
return(enum_type);
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::openEnumType
|
|
///\brief This is an overloaded member function, provided for convenience.
|
|
/// It differs from the above function in that it takes an
|
|
/// \c H5std_string for \a name.
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
EnumType Group::openEnumType( const H5std_string& name ) const
|
|
{
|
|
return( openEnumType( name.c_str()) );
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::openIntType
|
|
///\brief Opens the named integer datatype at this location.
|
|
///\param name - IN: Name of the integer datatype to open
|
|
///\return IntType instance
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
IntType Group::openIntType( const char* name ) const
|
|
{
|
|
// Call C function H5Topen2 to open the named datatype in this group,
|
|
// given either the file or group id
|
|
hid_t type_id = H5Topen2(getLocId(), name, H5P_DEFAULT);
|
|
|
|
// If the datatype's opening failed, throw an exception
|
|
if( type_id < 0 )
|
|
throwException("openIntType", "H5Topen2 failed");
|
|
|
|
// No failure, create and return the IntType object
|
|
IntType int_type;
|
|
f_DataType_setId(&int_type, type_id);
|
|
return(int_type);
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::openIntType
|
|
///\brief This is an overloaded member function, provided for convenience.
|
|
/// It differs from the above function in that it takes an
|
|
/// \c H5std_string for \a name.
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
IntType Group::openIntType( const H5std_string& name ) const
|
|
{
|
|
return( openIntType( name.c_str()) );
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::openFloatType
|
|
///\brief Opens the named floating-point datatype at this location.
|
|
///\param name - IN: Name of the floating-point datatype to open
|
|
///\return FloatType instance
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
FloatType Group::openFloatType( const char* name ) const
|
|
{
|
|
// Call C function H5Topen2 to open the named datatype in this group,
|
|
// given either the file or group id
|
|
hid_t type_id = H5Topen2(getLocId(), name, H5P_DEFAULT);
|
|
|
|
// If the datatype's opening failed, throw an exception
|
|
if( type_id < 0 )
|
|
throwException("openFloatType", "H5Topen2 failed");
|
|
|
|
// No failure, create and return the FloatType object
|
|
FloatType float_type;
|
|
f_DataType_setId(&float_type, type_id);
|
|
return(float_type);
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::openFloatType
|
|
///\brief This is an overloaded member function, provided for convenience.
|
|
/// It differs from the above function in that it takes an
|
|
/// \c H5std_string for \a name.
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
FloatType Group::openFloatType( const H5std_string& name ) const
|
|
{
|
|
return( openFloatType( name.c_str()) );
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::openStrType
|
|
///\brief Opens the named string datatype at this location.
|
|
///\param name - IN: Name of the string datatype to open
|
|
///\return StrType instance
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
StrType Group::openStrType( const char* name ) const
|
|
{
|
|
// Call C function H5Topen2 to open the named datatype in this group,
|
|
// given either the file or group id
|
|
hid_t type_id = H5Topen2(getLocId(), name, H5P_DEFAULT);
|
|
|
|
// If the datatype's opening failed, throw an exception
|
|
if( type_id < 0 )
|
|
throwException("openStrType", "H5Topen2 failed");
|
|
|
|
// No failure, create and return the StrType object
|
|
StrType str_type;
|
|
f_DataType_setId(&str_type, type_id);
|
|
return(str_type);
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::openStrType
|
|
///\brief This is an overloaded member function, provided for convenience.
|
|
/// It differs from the above function in that it takes an
|
|
/// \c H5std_string for \a name.
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
StrType Group::openStrType( const H5std_string& name ) const
|
|
{
|
|
return( openStrType( name.c_str()) );
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::openVarLenType
|
|
///\brief Opens the named variable length datatype at this location.
|
|
///\param name - IN: Name of the variable length datatype to open
|
|
///\return VarLenType instance
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
// Programmer Binh-Minh Ribler - Jul, 2005
|
|
//--------------------------------------------------------------------------
|
|
VarLenType Group::openVarLenType( const char* name ) const
|
|
{
|
|
// Call C function H5Topen2 to open the named datatype in this group,
|
|
// given either the file or group id
|
|
hid_t type_id = H5Topen2(getLocId(), name, H5P_DEFAULT);
|
|
|
|
// If the datatype's opening failed, throw an exception
|
|
if( type_id < 0 )
|
|
throwException("openVarLenType", "H5Topen2 failed");
|
|
|
|
// No failure, create and return the VarLenType object
|
|
VarLenType varlen_type;
|
|
f_DataType_setId(&varlen_type, type_id);
|
|
return(varlen_type);
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::openVarLenType
|
|
///\brief This is an overloaded member function, provided for convenience.
|
|
/// It differs from the above function in that it takes an
|
|
/// \c H5std_string for \a name.
|
|
// Programmer Binh-Minh Ribler - Jul, 2005
|
|
//--------------------------------------------------------------------------
|
|
VarLenType Group::openVarLenType( const H5std_string& name ) const
|
|
{
|
|
return( openVarLenType( name.c_str()) );
|
|
}
|
|
|
|
#ifndef H5_NO_DEPRECATED_SYMBOLS
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::iterateElems
|
|
///\brief Iterates a user's function over the entries of a group.
|
|
///\param name - IN : Name of group to iterate over
|
|
///\param idx - IN/OUT: Starting (IN) and ending (OUT) entry indices
|
|
///\param op - IN : User's function to operate on each entry
|
|
///\param op_data - IN/OUT: Data associated with the operation
|
|
///\return The return value of the first operator that returns non-zero,
|
|
/// or zero if all members were processed with no operator
|
|
/// returning non-zero.
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
int Group::iterateElems( const char* name, int *idx, H5G_iterate_t op , void* op_data )
|
|
{
|
|
int ret_value = H5Giterate(getId(), name, idx, op, op_data );
|
|
if( ret_value < 0 )
|
|
{
|
|
throwException("iterateElems", "H5Giterate failed");
|
|
}
|
|
return( ret_value );
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::iterateElems
|
|
///\brief This is an overloaded member function, provided for convenience.
|
|
/// It differs from the above function in that it takes an
|
|
/// \c H5std_string for \a name.
|
|
// Programmer Binh-Minh Ribler - 2000
|
|
//--------------------------------------------------------------------------
|
|
int Group::iterateElems( const H5std_string& name, int *idx, H5G_iterate_t op , void* op_data )
|
|
{
|
|
return( iterateElems( name.c_str(), idx, op, op_data ));
|
|
}
|
|
#endif /* H5_NO_DEPRECATED_SYMBOLS */
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::getNumObjs
|
|
///\brief Returns the number of objects in this group.
|
|
///\return Number of objects
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
// Programmer Binh-Minh Ribler - January, 2003
|
|
//--------------------------------------------------------------------------
|
|
hsize_t Group::getNumObjs() const
|
|
{
|
|
H5G_info_t ginfo; /* Group information */
|
|
|
|
herr_t ret_value = H5Gget_info(getLocId(), &ginfo);
|
|
if(ret_value < 0)
|
|
throwException("getNumObjs", "H5Gget_info failed");
|
|
return (ginfo.nlinks);
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::getObjnameByIdx
|
|
///\brief Returns the name of an object in this group, given the
|
|
/// object's index.
|
|
///\param idx - IN: Transient index of the object
|
|
///\return Object name
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
///\par Description
|
|
/// The value of idx can be any nonnegative number less than the
|
|
/// total number of objects in the group, which is returned by
|
|
/// the function \c Group::getNumObjs. Note that this is a
|
|
/// transient index; thus, an object may have a different index
|
|
/// each time the group is opened.
|
|
// Programmer Binh-Minh Ribler - Mar, 2005
|
|
//--------------------------------------------------------------------------
|
|
H5std_string Group::getObjnameByIdx(hsize_t idx) const
|
|
{
|
|
// call H5Lget_name_by_idx with name as NULL to get its length
|
|
ssize_t name_len = H5Lget_name_by_idx(getLocId(), ".", H5_INDEX_NAME, H5_ITER_INC, idx, NULL, 0, H5P_DEFAULT);
|
|
if(name_len < 0)
|
|
throwException("getObjnameByIdx", "H5Lget_name_by_idx failed");
|
|
|
|
// now, allocate C buffer to get the name
|
|
char* name_C = new char[name_len+1];
|
|
HDmemset(name_C, 0, name_len+1); // clear buffer
|
|
|
|
name_len = H5Lget_name_by_idx(getLocId(), ".", H5_INDEX_NAME, H5_ITER_INC, idx, name_C, name_len+1, H5P_DEFAULT);
|
|
|
|
if (name_len < 0)
|
|
{
|
|
delete []name_C;
|
|
throwException("getObjnameByIdx", "H5Lget_name_by_idx failed");
|
|
}
|
|
|
|
// clean up and return the string
|
|
H5std_string name = H5std_string(name_C);
|
|
delete []name_C;
|
|
return (name);
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::getObjnameByIdx
|
|
///\brief Retrieves the name of an object in this group, given the
|
|
/// object's index.
|
|
///\param idx - IN: Transient index of the object
|
|
///\param name - IN/OUT: Retrieved name of the object
|
|
///\param size - IN: Length to retrieve
|
|
///\return Actual size of the object name or 0, if object has no name
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
///\par Description
|
|
/// The value of idx can be any nonnegative number less than the
|
|
/// total number of objects in the group, which is returned by
|
|
/// the function \c Group::getNumObjs. Note that this is a
|
|
/// transient index; thus, an object may have a different index
|
|
/// each time the group is opened.
|
|
// Programmer Binh-Minh Ribler - January, 2003
|
|
//--------------------------------------------------------------------------
|
|
ssize_t Group::getObjnameByIdx(hsize_t idx, char* name, size_t size) const
|
|
{
|
|
ssize_t name_len = H5Lget_name_by_idx(getLocId(), ".", H5_INDEX_NAME, H5_ITER_INC, idx, name, size, H5P_DEFAULT);
|
|
if(name_len < 0)
|
|
throwException("getObjnameByIdx", "H5Lget_name_by_idx failed");
|
|
|
|
return (name_len);
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::getObjnameByIdx
|
|
///\brief This is an overloaded member function, provided for convenience.
|
|
/// It differs from the above function in that it takes an
|
|
/// \c H5std_string for \a name.
|
|
// Programmer Binh-Minh Ribler - January, 2003
|
|
//--------------------------------------------------------------------------
|
|
ssize_t Group::getObjnameByIdx(hsize_t idx, H5std_string& name, size_t size) const
|
|
{
|
|
char* name_C = new char[size+1]; // temporary C-string for object name
|
|
HDmemset(name_C, 0, size+1); // clear buffer
|
|
|
|
// call overloaded function to get the name
|
|
ssize_t name_len = getObjnameByIdx(idx, name_C, size+1);
|
|
if(name_len < 0)
|
|
{
|
|
delete []name_C;
|
|
throwException("getObjnameByIdx", "H5Lget_name_by_idx failed");
|
|
}
|
|
|
|
// clean up and return the string
|
|
name = H5std_string(name_C);
|
|
delete []name_C;
|
|
return (name_len);
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::childObjType
|
|
///\brief Returns the type of an object in this file/group, given the
|
|
/// object's name.
|
|
///\param objname - IN: Name of the object
|
|
///\return Object type, which can have the following values for group,
|
|
/// dataset, and named datatype
|
|
/// \li \c H5O_TYPE_GROUP
|
|
/// \li \c H5O_TYPE_DATASET
|
|
/// \li \c H5O_TYPE_NAMED_DATATYPE
|
|
/// Refer to the C API documentation for more details:
|
|
/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5O.html#Object-GetInfo
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
/// Exception will be thrown when:
|
|
/// - an error returned by the C API
|
|
/// - object type is not one of the valid values above
|
|
// Programmer Binh-Minh Ribler - April, 2014
|
|
//--------------------------------------------------------------------------
|
|
H5O_type_t Group::childObjType(const char* objname) const
|
|
{
|
|
H5O_info_t objinfo;
|
|
H5O_type_t objtype = H5O_TYPE_UNKNOWN;
|
|
|
|
// Use C API to get information of the object
|
|
herr_t ret_value = H5Oget_info_by_name(getLocId(), objname, &objinfo, H5P_DEFAULT);
|
|
|
|
// Throw exception if C API returns failure
|
|
if (ret_value < 0)
|
|
throwException("childObjType", "H5Oget_info_by_name failed");
|
|
// Return a valid type or throw an exception for unknown type
|
|
else
|
|
switch (objinfo.type)
|
|
{
|
|
case H5O_TYPE_GROUP:
|
|
case H5O_TYPE_DATASET:
|
|
case H5O_TYPE_NAMED_DATATYPE:
|
|
objtype = objinfo.type;
|
|
break;
|
|
case H5O_TYPE_UNKNOWN:
|
|
case H5O_TYPE_NTYPES:
|
|
default:
|
|
throwException("childObjType", "Unknown type of object");
|
|
}
|
|
return(objtype);
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::childObjType
|
|
///\brief This is an overloaded member function, provided for convenience.
|
|
/// It takes an \a H5std_string for the object's name.
|
|
///\brief Returns the type of an object in this group, given the
|
|
/// object's name.
|
|
///\param objname - IN: Name of the object (H5std_string&)
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
// Programmer Binh-Minh Ribler - April, 2014
|
|
//--------------------------------------------------------------------------
|
|
H5O_type_t Group::childObjType(const H5std_string& objname) const
|
|
{
|
|
// Use overloaded function
|
|
H5O_type_t objtype = childObjType(objname.c_str());
|
|
return(objtype);
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::childObjType
|
|
///\brief Returns the type of an object in this file/group, given the
|
|
/// object's index and its type and order.
|
|
///\param index - IN: Position of the object
|
|
///\param index_type - IN: Type of the index, default to H5_INDEX_NAME
|
|
///\param order - IN: Traversing order, default to H5_ITER_INC
|
|
///\param objname - IN: Name of the object, default to "."
|
|
///\return Object type, which can have the following values for group,
|
|
/// dataset, and named datatype
|
|
/// \li \c H5O_TYPE_GROUP
|
|
/// \li \c H5O_TYPE_DATASET
|
|
/// \li \c H5O_TYPE_NAMED_DATATYPE
|
|
/// Refer to the C API documentation for more details:
|
|
/// http://www.hdfgroup.org/HDF5/doc/RM/RM_H5O.html#Object-GetInfo
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
/// Exception will be thrown when:
|
|
/// - an error returned by the C API
|
|
/// - object type is not one of the valid values above
|
|
// Developer's Notes:
|
|
// - this overload uses H5Oget_info_by_idx instead of H5Oget_info_by_name
|
|
// like the previous childObjType()
|
|
// - index is the required argument so, first
|
|
// - objname is last because it's more likely the location is already
|
|
// fully specified
|
|
// - Leave property list out for now because C API is not using it, it
|
|
// can be added later when needed.
|
|
// Programmer Binh-Minh Ribler - April, 2014
|
|
//--------------------------------------------------------------------------
|
|
H5O_type_t Group::childObjType(hsize_t index, H5_index_t index_type, H5_iter_order_t order, const char* objname) const
|
|
{
|
|
herr_t ret_value;
|
|
H5O_info_t objinfo;
|
|
H5O_type_t objtype = H5O_TYPE_UNKNOWN;
|
|
|
|
// Use C API to get information of the object
|
|
ret_value = H5Oget_info_by_idx(getLocId(), objname, index_type, order, index, &objinfo, H5P_DEFAULT);
|
|
|
|
// Throw exception if C API returns failure
|
|
if (ret_value < 0)
|
|
throwException("childObjType", "H5Oget_info_by_idx failed");
|
|
// Return a valid type or throw an exception for unknown type
|
|
else
|
|
switch (objinfo.type)
|
|
{
|
|
case H5O_TYPE_GROUP:
|
|
case H5O_TYPE_DATASET:
|
|
case H5O_TYPE_NAMED_DATATYPE:
|
|
objtype = objinfo.type;
|
|
break;
|
|
case H5O_TYPE_UNKNOWN:
|
|
case H5O_TYPE_NTYPES:
|
|
default:
|
|
throwException("childObjType", "Unknown type of object");
|
|
}
|
|
return(objtype);
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::childObjVersion
|
|
///\brief Returns the object header version of an object in this file/group,
|
|
/// given the object's name.
|
|
///\param objname - IN: Name of the object
|
|
///\return Object version, which can have the following values:
|
|
/// \li \c H5O_VERSION_1
|
|
/// \li \c H5O_VERSION_2
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
/// Exception will be thrown when:
|
|
/// - an error returned by the C API
|
|
/// - version number is not one of the valid values above
|
|
// Programmer Binh-Minh Ribler - April, 2014
|
|
//--------------------------------------------------------------------------
|
|
unsigned Group::childObjVersion(const char* objname) const
|
|
{
|
|
H5O_info_t objinfo;
|
|
unsigned version = 0;
|
|
|
|
// Use C API to get information of the object
|
|
herr_t ret_value = H5Oget_info_by_name(getLocId(), objname, &objinfo, H5P_DEFAULT);
|
|
|
|
// Throw exception if C API returns failure
|
|
if (ret_value < 0)
|
|
throwException("childObjVersion", "H5Oget_info_by_name failed");
|
|
// Return a valid version or throw an exception for invalid value
|
|
else
|
|
{
|
|
version = objinfo.hdr.version;
|
|
if (version != H5O_VERSION_1 && version != H5O_VERSION_2)
|
|
throwException("childObjVersion", "Invalid version for object");
|
|
}
|
|
return(version);
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::childObjVersion
|
|
///\brief This is an overloaded member function, provided for convenience.
|
|
/// It takes an \a H5std_string for the object's name.
|
|
///\brief Returns the type of an object in this group, given the
|
|
/// object's name.
|
|
///\param objname - IN: Name of the object (H5std_string&)
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
// Programmer Binh-Minh Ribler - April, 2014
|
|
//--------------------------------------------------------------------------
|
|
unsigned Group::childObjVersion(const H5std_string& objname) const
|
|
{
|
|
// Use overloaded function
|
|
unsigned version = childObjVersion(objname.c_str());
|
|
return(version);
|
|
}
|
|
|
|
#ifndef H5_NO_DEPRECATED_SYMBOLS
|
|
#ifndef DOXYGEN_SHOULD_SKIP_THIS
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::getObjTypeByIdx
|
|
///\brief Returns the type of an object in this group, given the
|
|
/// object's index.
|
|
///\param idx - IN: Transient index of the object
|
|
///\return Object type
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
// Programmer Binh-Minh Ribler - January, 2003
|
|
//--------------------------------------------------------------------------
|
|
H5G_obj_t Group::getObjTypeByIdx(hsize_t idx) const
|
|
{
|
|
H5G_obj_t obj_type = H5Gget_objtype_by_idx(getLocId(), idx);
|
|
if (obj_type == H5G_UNKNOWN)
|
|
throwException("getObjTypeByIdx", "H5Gget_objtype_by_idx failed");
|
|
|
|
return (obj_type);
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::getObjTypeByIdx
|
|
///\brief This is an overloaded member function, provided for convenience.
|
|
/// It differs from the above function because it also provides
|
|
/// the returned object type in text (char*)
|
|
///\param idx - IN: Transient index of the object
|
|
///\param type_name - OUT: Object type in text
|
|
///\return Object type
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
// Programmer Binh-Minh Ribler - May, 2010
|
|
// Modification
|
|
// Modified to use the other function. -BMR, 2016/03/07
|
|
//--------------------------------------------------------------------------
|
|
H5G_obj_t Group::getObjTypeByIdx(hsize_t idx, char* type_name) const
|
|
{
|
|
H5std_string stype_name(type_name);
|
|
return(getObjTypeByIdx(idx, stype_name));
|
|
}
|
|
//--------------------------------------------------------------------------
|
|
// Function: Group::getObjTypeByIdx
|
|
///\brief This is an overloaded member function, provided for convenience.
|
|
/// It differs from the above function because it also provides
|
|
/// the returned object type in text (H5std_string&)
|
|
///\param idx - IN: Transient index of the object
|
|
///\param type_name - OUT: Object type in text
|
|
///\return Object type
|
|
///\exception H5::FileIException or H5::GroupIException
|
|
// Programmer Binh-Minh Ribler - January, 2003
|
|
//--------------------------------------------------------------------------
|
|
H5G_obj_t Group::getObjTypeByIdx(hsize_t idx, H5std_string& type_name) const
|
|
{
|
|
H5G_obj_t obj_type = H5Gget_objtype_by_idx(getLocId(), idx);
|
|
switch (obj_type)
|
|
{
|
|
case H5G_LINK: type_name = H5std_string("symbolic link"); break;
|
|
case H5G_GROUP: type_name = H5std_string("group"); break;
|
|
case H5G_DATASET: type_name = H5std_string("dataset"); break;
|
|
case H5G_TYPE: type_name = H5std_string("datatype"); break;
|
|
case H5G_UNKNOWN:
|
|
case H5G_UDLINK:
|
|
case H5G_RESERVED_5:
|
|
case H5G_RESERVED_6:
|
|
case H5G_RESERVED_7:
|
|
default:
|
|
throwException("getObjTypeByIdx", "H5Gget_objtype_by_idx failed");
|
|
}
|
|
return (obj_type);
|
|
}
|
|
|
|
#endif // DOXYGEN_SHOULD_SKIP_THIS
|
|
#endif /* H5_NO_DEPRECATED_SYMBOLS */
|
|
|
|
#ifndef DOXYGEN_SHOULD_SKIP_THIS
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: f_DataType_setId - friend
|
|
// Purpose: This function is friend to class H5::DataType so that it
|
|
// can set DataType::id in order to work around a problem
|
|
// described in the JIRA issue HDFFV-7947.
|
|
// Applications shouldn't need to use it.
|
|
// param dtype - IN/OUT: DataType object to be changed
|
|
// param new_id - IN: New id to set
|
|
// Programmer Binh-Minh Ribler - 2015
|
|
//--------------------------------------------------------------------------
|
|
void f_DataType_setId(DataType* dtype, hid_t new_id)
|
|
{
|
|
dtype->p_setId(new_id);
|
|
}
|
|
|
|
//--------------------------------------------------------------------------
|
|
// Function: f_DataSet_setId - friend
|
|
// Purpose: This function is friend to class H5::DataSet so that it
|
|
// can set DataSet::id in order to work around a problem
|
|
// described in the JIRA issue HDFFV-7947.
|
|
// Applications shouldn't need to use it.
|
|
// param dset - IN/OUT: DataSet object to be changed
|
|
// param new_id - IN: New id to set
|
|
// Programmer Binh-Minh Ribler - 2015
|
|
//--------------------------------------------------------------------------
|
|
void f_DataSet_setId(DataSet* dset, hid_t new_id)
|
|
{
|
|
dset->p_setId(new_id);
|
|
}
|
|
|
|
#endif // DOXYGEN_SHOULD_SKIP_THIS
|
|
|
|
#ifndef H5_NO_NAMESPACE
|
|
} // end namespace
|
|
#endif
|