mirror of
https://github.com/HDFGroup/hdf5.git
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a6f6462541
File format is not stable, don't keep files produced!
Description:
First stage of checkins modifying the format of groups to support creation
order. Implement "dense" storage for links in groups.
Try to clarify some of the symbols for the H5L API.
Add the H5Pset_latest_format() flag for FAPLs, to choose to use the newest
file format options (including "dense" link storage in groups)
Add the H5Pset_track_creation_order() flag for GCPLs, to enable creation
order tracking in groups (although no index on creation order yet).
Remove --enable-group-revision configure flag, as file format issues are
now handled in a backwardly/forwardly compatible way.
Clean up lots of compiler warnings and other minor formatting issues.
Tested on:
FreeBSD/32 4.11 (sleipnir) w/threadsafe
Linux/32 2.4 (heping) w/FORTRAN & C++
Linux/64 2.4 (mir) w/enable-v1.6 compa
Mac OSX/32 10.4.8 (amazon)
AIX 5.3 (copper) w/parallel & FORTRAN
369 lines
15 KiB
XML
369 lines
15 KiB
XML
#############################
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Expected output for 'h5dump --xml tmany.h5'
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#############################
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<?xml version="1.0" encoding="UTF-8"?>
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<hdf5:HDF5-File xmlns:hdf5="http://hdf.ncsa.uiuc.edu/DTDs/HDF5-File" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://hdf.ncsa.uiuc.edu/DTDs/HDF5File http://hdf.ncsa.uiuc.edu/DTDs/HDF5-File.xsd">
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<hdf5:RootGroup OBJ-XID="xid_96" H5Path="/">
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<hdf5:Group Name="g1" OBJ-XID="xid_808" H5Path="/g1" Parents="xid_96" H5ParentPaths="/" >
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<hdf5:Group Name="g1.1" OBJ-XID="xid_1848" H5Path="/g1/g1.1" Parents="xid_808" H5ParentPaths="/g1" >
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<hdf5:Dataset Name="dset1" OBJ-XID="xid_2888" H5Path= "/g1/g1.1/dset1" Parents="xid_1848" H5ParentPaths="/g1/g1.1">
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<hdf5:StorageLayout>
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<hdf5:ChunkedLayout Ndims="1">
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<hdf5:ChunkDimension DimSize="2" />
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<hdf5:RequiredFilter>
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</hdf5:RequiredFilter>
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</hdf5:ChunkedLayout>
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</hdf5:StorageLayout>
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<hdf5:FillValueInfo FillTime="FillIfSet" AllocationTime="Incremental">
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<hdf5:FillValue>
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<hdf5:NoFill/>
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</hdf5:FillValue>
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</hdf5:FillValueInfo>
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<hdf5:Dataspace>
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<hdf5:SimpleDataspace Ndims="1">
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<hdf5:Dimension DimSize="6" MaxDimSize="UNLIMITED"/>
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</hdf5:SimpleDataspace>
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</hdf5:Dataspace>
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<hdf5:DataType>
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<hdf5:CompoundType>
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<hdf5:Field FieldName="a_array">
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<hdf5:DataType>
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<hdf5:ArrayType Ndims="4">
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<hdf5:ArrayDimension DimSize="2" DimPerm="0"/>
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<hdf5:ArrayDimension DimSize="2" DimPerm="1"/>
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<hdf5:ArrayDimension DimSize="2" DimPerm="2"/>
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<hdf5:ArrayDimension DimSize="2" DimPerm="3"/>
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<hdf5:DataType>
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<hdf5:AtomicType>
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<hdf5:IntegerType ByteOrder="BE" Sign="true" Size="4" />
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</hdf5:AtomicType>
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</hdf5:DataType>
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</hdf5:ArrayType>
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</hdf5:DataType>
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</hdf5:Field>
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<hdf5:Field FieldName="b_array">
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<hdf5:DataType>
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<hdf5:ArrayType Ndims="4">
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<hdf5:ArrayDimension DimSize="2" DimPerm="0"/>
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<hdf5:ArrayDimension DimSize="2" DimPerm="1"/>
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<hdf5:ArrayDimension DimSize="2" DimPerm="2"/>
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<hdf5:ArrayDimension DimSize="2" DimPerm="3"/>
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<hdf5:DataType>
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<hdf5:AtomicType>
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<hdf5:FloatType ByteOrder="BE" Size="8" SignBitLocation="63" ExponentBits="11" ExponentLocation="52" MantissaBits="52" MantissaLocation="0" />
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</hdf5:AtomicType>
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</hdf5:DataType>
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</hdf5:ArrayType>
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</hdf5:DataType>
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</hdf5:Field>
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<hdf5:Field FieldName="c_array">
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<hdf5:DataType>
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<hdf5:ArrayType Ndims="4">
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<hdf5:ArrayDimension DimSize="2" DimPerm="0"/>
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<hdf5:ArrayDimension DimSize="2" DimPerm="1"/>
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<hdf5:ArrayDimension DimSize="2" DimPerm="2"/>
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<hdf5:ArrayDimension DimSize="2" DimPerm="3"/>
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<hdf5:DataType>
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<hdf5:AtomicType>
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<hdf5:FloatType ByteOrder="BE" Size="8" SignBitLocation="63" ExponentBits="11" ExponentLocation="52" MantissaBits="52" MantissaLocation="0" />
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</hdf5:AtomicType>
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</hdf5:DataType>
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</hdf5:ArrayType>
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</hdf5:DataType>
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</hdf5:Field>
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</hdf5:CompoundType>
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</hdf5:DataType>
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<hdf5:Attribute Name="attr1">
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<hdf5:Dataspace>
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<hdf5:SimpleDataspace Ndims="1">
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<hdf5:Dimension DimSize="10" MaxDimSize="10"/>
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</hdf5:SimpleDataspace>
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</hdf5:Dataspace>
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<hdf5:DataType>
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<hdf5:AtomicType>
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<hdf5:IntegerType ByteOrder="BE" Sign="true" Size="1" />
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</hdf5:AtomicType>
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</hdf5:DataType>
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<hdf5:Data>
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<hdf5:DataFromFile>
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97 98 99 100 101 102 103 104 105 0
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</hdf5:DataFromFile>
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</hdf5:Data>
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</hdf5:Attribute>
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<hdf5:Attribute Name="attr2">
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<hdf5:Dataspace>
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<hdf5:SimpleDataspace Ndims="2">
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<hdf5:Dimension DimSize="2" MaxDimSize="2"/>
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<hdf5:Dimension DimSize="2" MaxDimSize="2"/>
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</hdf5:SimpleDataspace>
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</hdf5:Dataspace>
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<hdf5:DataType>
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<hdf5:AtomicType>
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<hdf5:IntegerType ByteOrder="BE" Sign="true" Size="4" />
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</hdf5:AtomicType>
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</hdf5:DataType>
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<hdf5:Data>
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<hdf5:DataFromFile>
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0 1
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2 3
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</hdf5:DataFromFile>
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</hdf5:Data>
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</hdf5:Attribute>
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<hdf5:Attribute Name="attr3">
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<hdf5:Dataspace>
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<hdf5:SimpleDataspace Ndims="1">
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<hdf5:Dimension DimSize="10" MaxDimSize="10"/>
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</hdf5:SimpleDataspace>
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</hdf5:Dataspace>
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<hdf5:DataType>
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<hdf5:AtomicType>
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<hdf5:FloatType ByteOrder="BE" Size="8" SignBitLocation="63" ExponentBits="11" ExponentLocation="52" MantissaBits="52" MantissaLocation="0" />
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</hdf5:AtomicType>
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</hdf5:DataType>
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<hdf5:Data>
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<hdf5:DataFromFile>
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0 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9
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</hdf5:DataFromFile>
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</hdf5:Data>
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</hdf5:Attribute>
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<!-- Note: format of compound data not specified -->
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<hdf5:Data>
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<hdf5:DataFromFile>
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0 1
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0 1
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0 1
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0 1
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0 1
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0 1
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0 1
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0 1 0 1
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0 1
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0 1
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0 1
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0 1
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0 1
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0 1
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0 1 6 7
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6 7
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6 7
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6 7
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6 7
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6 7
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6 7
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6 7
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1 2
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1 2
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1 2
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1 2
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1 2
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1 2
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1 2
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1 2 1 2
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1 2
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1 2
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1 2
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1 2
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1 2
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1 2
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1 2 7 8
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7 8
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7 8
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7 8
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7 8
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7 8
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7 8
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7 8
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2 3
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2 3
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2 3
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2 3
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2 3
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2 3
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2 3
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2 3 2 3
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2 3
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2 3
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2 3
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2 3
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2 3
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2 3
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2 3 8 9
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8 9
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8 9
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8 9
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8 9
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8 9
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8 9
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8 9
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3 4
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3 4
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3 4
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3 4
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3 4
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3 4
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3 4
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3 4 3 4
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3 4
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3 4
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3 4
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3 4
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3 4
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3 4
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3 4 9 10
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9 10
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9 10
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9 10
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9 10
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9 10
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9 10
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9 10
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4 5
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4 5
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4 5
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4 5
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4 5
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4 5
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4 5
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4 5 4 5
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4 5
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4 5
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4 5
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4 5
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4 5
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4 5
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4 5 10 11
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10 11
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10 11
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10 11
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10 11
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10 11
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10 11
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10 11
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5 6
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5 6
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5 6
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5 6
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5 6
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5 6
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5 6
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5 6 5 6
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5 6
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5 6
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5 6
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5 6
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5 6
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5 6
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5 6 11 12
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11 12
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11 12
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11 12
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11 12
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11 12
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11 12
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11 12
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</hdf5:DataFromFile>
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</hdf5:Data>
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</hdf5:Dataset>
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</hdf5:Group>
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<hdf5:Group Name="g1.2" OBJ-XID="xid_6088" H5Path="/g1/g1.2" Parents="xid_808" H5ParentPaths="/g1" >
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<hdf5:Dataset Name="link1" OBJ-XID="xid_2888-1" H5Path="/g1/g1.2/link1" Parents="xid_6088" H5ParentPaths="/g1/g1.2">
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<hdf5:DatasetPtr OBJ-XID="xid_2888" H5Path="/g1/g1.2/link1"/>
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</hdf5:Dataset>
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</hdf5:Group>
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</hdf5:Group>
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<hdf5:Group Name="g2" OBJ-XID="xid_9184" H5Path="/g2" Parents="xid_96" H5ParentPaths="/" >
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<hdf5:SoftLink LinkName="slink2" OBJ-XID="xid_808" H5SourcePath="/g2/slink2" TargetPath="/g1" TargetObj="xid_808" Parents="xid_9184" H5ParentPaths="/g2" />
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</hdf5:Group>
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<hdf5:Group Name="g3" OBJ-XID="xid_10224" H5Path="/g3" Parents="xid_96" H5ParentPaths="/" >
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<hdf5:Dataset Name="link3" OBJ-XID="xid_11648" H5Path= "/g3/link3" Parents="xid_10224" H5ParentPaths="/g3">
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<hdf5:StorageLayout>
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<hdf5:ContiguousLayout/>
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</hdf5:StorageLayout>
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<hdf5:FillValueInfo FillTime="FillIfSet" AllocationTime="Late">
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<hdf5:FillValue>
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<hdf5:NoFill/>
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</hdf5:FillValue>
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</hdf5:FillValueInfo>
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<hdf5:Dataspace>
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<hdf5:SimpleDataspace Ndims="2">
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<hdf5:Dimension DimSize="10" MaxDimSize="10"/>
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<hdf5:Dimension DimSize="10" MaxDimSize="10"/>
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</hdf5:SimpleDataspace>
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</hdf5:Dataspace>
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<hdf5:DataType>
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<hdf5:AtomicType>
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<hdf5:IntegerType ByteOrder="BE" Sign="true" Size="4" />
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</hdf5:AtomicType>
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</hdf5:DataType>
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<hdf5:Data>
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<hdf5:DataFromFile>
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0 1 2 3 4 5 6 7 8 9
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0 1 2 3 4 5 6 7 8 9
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0 1 2 3 4 5 6 7 8 9
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0 1 2 3 4 5 6 7 8 9
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0 1 2 3 4 5 6 7 8 9
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0 1 2 3 4 5 6 7 8 9
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0 1 2 3 4 5 6 7 8 9
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0 1 2 3 4 5 6 7 8 9
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0 1 2 3 4 5 6 7 8 9
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0 1 2 3 4 5 6 7 8 9
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</hdf5:DataFromFile>
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</hdf5:Data>
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</hdf5:Dataset>
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</hdf5:Group>
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<hdf5:Group Name="g4" OBJ-XID="xid_10936" H5Path="/g4" Parents="xid_96" H5ParentPaths="/" >
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<hdf5:Dataset Name="dset2" OBJ-XID="xid_11648-2" H5Path="/g4/dset2" Parents="xid_10936" H5ParentPaths="/g4">
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<hdf5:DatasetPtr OBJ-XID="xid_11648" H5Path="/g4/dset2"/>
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</hdf5:Dataset>
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</hdf5:Group>
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<hdf5:Group Name="g5" OBJ-XID="xid_8512" H5Path="/g5" Parents="xid_96" H5ParentPaths="/" >
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<hdf5:SoftLink LinkName="slink4" OBJ-XID="xid_15992" H5SourcePath="/g5/slink4" TargetPath="/g6/dset3" TargetObj="xid_15992" Parents="xid_8512" H5ParentPaths="/g5" />
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</hdf5:Group>
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<hdf5:Group Name="g6" OBJ-XID="xid_8560" H5Path="/g6" Parents="xid_96" H5ParentPaths="/" >
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<hdf5:Dataset Name="dset3" OBJ-XID="xid_15992" H5Path= "/g6/dset3" Parents="xid_8560" H5ParentPaths="/g6">
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<hdf5:StorageLayout>
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<hdf5:ContiguousLayout/>
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</hdf5:StorageLayout>
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<hdf5:FillValueInfo FillTime="FillIfSet" AllocationTime="Late">
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<hdf5:FillValue>
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<hdf5:NoFill/>
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</hdf5:FillValue>
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</hdf5:FillValueInfo>
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<hdf5:Dataspace>
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<hdf5:SimpleDataspace Ndims="2">
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<hdf5:Dimension DimSize="10" MaxDimSize="10"/>
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<hdf5:Dimension DimSize="10" MaxDimSize="10"/>
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</hdf5:SimpleDataspace>
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</hdf5:Dataspace>
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<hdf5:DataType>
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<hdf5:AtomicType>
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<hdf5:IntegerType ByteOrder="BE" Sign="true" Size="4" />
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</hdf5:AtomicType>
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</hdf5:DataType>
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<hdf5:Data>
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<hdf5:DataFromFile>
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0 0 0 0 0 0 0 0 0 0
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1 1 1 1 1 1 1 1 1 1
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2 2 2 2 2 2 2 2 2 2
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3 3 3 3 3 3 3 3 3 3
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4 4 4 4 4 4 4 4 4 4
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5 5 5 5 5 5 5 5 5 5
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6 6 6 6 6 6 6 6 6 6
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7 7 7 7 7 7 7 7 7 7
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8 8 8 8 8 8 8 8 8 8
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9 9 9 9 9 9 9 9 9 9
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</hdf5:DataFromFile>
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</hdf5:Data>
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</hdf5:Dataset>
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</hdf5:Group>
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<hdf5:Group Name="g7" OBJ-XID="xid_16920" H5Path="/g7" Parents="xid_96" H5ParentPaths="/" >
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<hdf5:SoftLink LinkName="slink5" OBJ-XID="xid_18446744073709551614" H5SourcePath="/g7/slink5" TargetPath="/g8/elink" Parents="xid_16920" H5ParentPaths="/g7" />
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<hdf5:SoftLink LinkName="slink6" OBJ-XID="xid_18446744073709551613" H5SourcePath="/g7/slink6" TargetPath="/g8/udlink" Parents="xid_16920" H5ParentPaths="/g7" />
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</hdf5:Group>
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<hdf5:Group Name="g8" OBJ-XID="xid_17632" H5Path="/g8" Parents="xid_96" H5ParentPaths="/" >
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<hdf5:ExternalLink LinkName="elink" OBJ-XID="xid_18446744073709551612" H5SourcePath="/g8/elink" TargetFilename="somefile" TargetPath="somepath" Parents="xid_17632" H5ParentPaths="/g8" />
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<hdf5:UserDefined LinkName="udlink" OBJ-XID="xid_18446744073709551611" H5SourcePath="/g8/udlink" LinkClass="187" Parents="xid_17632" H5ParentPaths="/g8" />
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</hdf5:Group>
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</hdf5:RootGroup>
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</hdf5:HDF5-File>
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