mirror of
https://github.com/HDFGroup/hdf5.git
synced 2024-12-09 07:32:32 +08:00
528 lines
16 KiB
Perl
Executable File
528 lines
16 KiB
Perl
Executable File
#!/usr/bin/perl
|
|
#
|
|
# Copyright by The HDF Group.
|
|
# Copyright by the Board of Trustees of the University of Illinois.
|
|
# All rights reserved.
|
|
#
|
|
# This file is part of HDF5. The full HDF5 copyright notice, including
|
|
# terms governing use, modification, and redistribution, is contained in
|
|
# the files COPYING and Copyright.html. COPYING can be found at the root
|
|
# of the source code distribution tree; Copyright.html can be found at the
|
|
# root level of an installed copy of the electronic HDF5 document set and
|
|
# is linked from the top-level documents page. It can also be found at
|
|
# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
|
|
# access to either file, you may request a copy from help@hdfgroup.org.
|
|
#
|
|
|
|
#
|
|
# Generates an ASCII and Excel-importable file of tables representing
|
|
# the output of running the "pio_perf" command. The name of the input
|
|
# file is important. The name should reflect the command-line options
|
|
# used in the performance test. It needs to be of the form:
|
|
#
|
|
# f#[GMK].i#.d#.X#[GMK].x#[GMK]..*
|
|
#
|
|
# For example:
|
|
#
|
|
# PIO_output_f1G.i2.d1.X2M.x128K.frost
|
|
#
|
|
# for a 1GB sized file ran for 2 iterations with 1 dataset from xfer
|
|
# buffer size of 128KB to 2MB on the frost machine.
|
|
#
|
|
# The output file will have the same name as the input, but will append
|
|
# ".ascii" for the ASCII file and ".excel" for the Excel-importable
|
|
# file.
|
|
#
|
|
# The data structure used in this program looks like:
|
|
#
|
|
# %results = {
|
|
# num_proc => (
|
|
# %xfer_size => (
|
|
# %posix = {
|
|
# 'write-only' => ##,
|
|
# 'write-close' => ##,
|
|
# 'read-only' => ##,
|
|
# 'read-close' => ##
|
|
# },
|
|
# %mpio = {
|
|
# 'write-only' => ##,
|
|
# 'write-close' => ##,
|
|
# 'read-only' => ##,
|
|
# 'read-close' => ##
|
|
# },
|
|
# %phdf = {
|
|
# 'write-only' => ##,
|
|
# 'write-close' => ##,
|
|
# 'read-only' => ##,
|
|
# 'read-close' => ##
|
|
# }
|
|
# )
|
|
# )
|
|
# }
|
|
|
|
use IO::Handle;
|
|
use Getopt::Long;
|
|
use List::Util qw[max];
|
|
|
|
if ($#ARGV == -1) {
|
|
usage();
|
|
}
|
|
|
|
my ($ascii_output, $excel_output);
|
|
|
|
GetOptions("data_type=s"=>\$data_type,
|
|
"buffer_size=i"=>\$transfer_buffer_size,
|
|
"procs=i"=>\$num_procs_graph,
|
|
"help!"=>\$help,
|
|
"throughput=s"=>\$throughput_type,
|
|
"io_type=i"=>\$io_type,
|
|
"3d!"=>\$plot_3d);
|
|
|
|
usage() if $help or !@ARGV;
|
|
|
|
$throughput_type = "average" if !$throughput_type;
|
|
$io_type = 7 if !$io_type;
|
|
|
|
foreach my $arg (@ARGV) {
|
|
|
|
if ($arg !~ /^-/) {
|
|
$arg =~ /f([0-9]+.)\.i([0-9]+)\.d([0-9]+)\.X([0-9]+.)\.x([0-9]+.)\.(.*)/;
|
|
|
|
my $output = $arg . $1 . ".X" . $4 . ".x" . $5 . "." . $6;
|
|
|
|
$ascii_output = $output . ".ascii";
|
|
$excel_output = $output . ".excel";
|
|
|
|
open(INPUT, "<$arg") or die "error: cannot open file $arg: $!\n";
|
|
open(ASCII_OUTPUT, ">$ascii_output") or
|
|
die "error: cannot open file $ascii_output: $!\n";
|
|
open(EXCEL_OUTPUT, ">$excel_output") or
|
|
die "error: cannot open file $excel_output: $!\n";
|
|
}
|
|
else
|
|
{
|
|
die "error: unrecognized option: $arg\n";
|
|
}
|
|
}
|
|
|
|
my %results;
|
|
my $num_procs = 0;
|
|
my ($xfer_size, $avg_type, $type);
|
|
|
|
my $posix = 0, $mpio = 1, $phdf5 = 2;
|
|
|
|
##"==== End of Parameters ===="
|
|
|
|
while (<INPUT>) {
|
|
if (/Number of processors = ([0-9]+)/) {
|
|
$num_procs = $1;
|
|
}
|
|
|
|
if (/Transfer Buffer Size: ([0-9]+)/) {
|
|
$xfer_size = $1;
|
|
}
|
|
|
|
$type = $posix if /POSIX/;
|
|
$type = $mpio if /MPIO/;
|
|
$type = $phdf5 if /PHDF5/;
|
|
|
|
if (/Write Open/) {
|
|
$avg_type = "write-close";
|
|
} elsif (/Write/) {
|
|
$avg_type = "write-only";
|
|
} elsif (/Read Open/) {
|
|
$avg_type = "read-close";
|
|
} elsif (/Read/) {
|
|
$avg_type = "read-only";
|
|
}
|
|
|
|
if($throughput_type eq "max")
|
|
{
|
|
if (/Maximum Throughput: ( {0,2}[0-9]+\.[0-9]{2}) MB\/s/) {
|
|
$results{$num_procs}{$xfer_size}[$type]{$avg_type} = $1;
|
|
}
|
|
}
|
|
elsif($throughput_type eq "min")
|
|
{
|
|
if (/Minimum Throughput: ( {0,2}[0-9]+\.[0-9]{2}) MB\/s/) {
|
|
$results{$num_procs}{$xfer_size}[$type]{$avg_type} = $1;
|
|
}
|
|
}
|
|
elsif($throughput_type eq "average")
|
|
{
|
|
if (/Average Throughput: ( {0,2}[0-9]+\.[0-9]{2}) MB\/s/) {
|
|
$results{$num_procs}{$xfer_size}[$type]{$avg_type} = $1;
|
|
}
|
|
}
|
|
}
|
|
|
|
sub usage {
|
|
print "Usage: gen_reporl.pl [options] FILE
|
|
options are:\n
|
|
-data_type \"data_type\" plots the results for \"write-only\",\"read-only\", \"write-close\", or \"read-close\" (default is write-only)\n
|
|
-buffer_size \"buffer_size\" plots data from this buffer size (in kilobytes, default is 128)\n
|
|
-procs \"num_procs\" plots data from the run with num_procs processors (default is the highest number of processors for which there is data).\n
|
|
-throughput \"throughput_type\" plots either the \"max\", \"min\", or \"average\" throughput (default is average)\n
|
|
-io_type \"io_type\" where \"io_type\" is the bitwise or of the io_type for which plotting is desired (1 for POSIX, 2 for MPIO, 4 for PHDF5 (default is 7 (all))\n
|
|
-3d if present, does a 3d plot in addition to the normal ones\n";
|
|
|
|
exit 1;
|
|
}
|
|
|
|
sub create_excel_output_header {
|
|
my $output_header;
|
|
my $kb = 1024;
|
|
my $mb = $kb * $kb;
|
|
|
|
foreach my $key (sort { $a <=> $b } keys(%{$results{$num_procs}})) {
|
|
if ($key < $mb) {
|
|
$key /= $kb;
|
|
$output_header .= "\t". $key . "K";
|
|
} else {
|
|
$key /= $mb;
|
|
$output_header .= "\t". $key . "M";
|
|
}
|
|
}
|
|
|
|
$output_header;
|
|
}
|
|
|
|
sub create_excel_output_string {
|
|
my ($t) = @_;
|
|
my $output_content = "";
|
|
|
|
foreach my $procs (sort { $b <=> $a } keys(%results)) {
|
|
$output_content .= "\n$procs Procs";
|
|
$output_content .= "\n" . create_excel_output_header;
|
|
$output_content .= "\n POSIX";
|
|
|
|
foreach my $xfer (sort { $a <=> $b } keys(%{$results{$procs}})) {
|
|
$output_content .= "\t$results{$procs}{$xfer}[0]{$t}";
|
|
}
|
|
|
|
$output_content .= "\n MPIO";
|
|
|
|
foreach my $xfer (sort { $a <=> $b } keys(%{$results{$procs}})) {
|
|
$output_content .= "\t$results{$procs}{$xfer}[1]{$t}";
|
|
}
|
|
|
|
$output_content .= "\n PHDF5";
|
|
|
|
foreach my $xfer (sort { $a <=> $b } keys(%{$results{$procs}})) {
|
|
$output_content .= "\t$results{$procs}{$xfer}[2]{$t}";
|
|
}
|
|
|
|
$output_content .= "\n";
|
|
}
|
|
|
|
$output_content;
|
|
}
|
|
|
|
sub is_defined {
|
|
my ($t) = @_;
|
|
my $def = 1;
|
|
|
|
foreach my $procs (sort { $b <=> $a } keys(%results)) {
|
|
foreach my $xfer (sort { $a <=> $b } keys(%{$results{$procs}})) {
|
|
if (!defined($results{$procs}{$xfer}[0]{$t})) {
|
|
$def = 0;
|
|
}
|
|
}
|
|
|
|
foreach my $xfer (sort { $a <=> $b } keys(%{$results{$procs}})) {
|
|
if (!defined($results{$procs}{$xfer}[0]{$t})) {
|
|
$def = 0;
|
|
}
|
|
}
|
|
|
|
foreach my $xfer (sort { $a <=> $b } keys(%{$results{$procs}})) {
|
|
if (!defined($results{$procs}{$xfer}[0]{$t})) {
|
|
$def = 0;
|
|
}
|
|
}
|
|
}
|
|
|
|
$def;
|
|
}
|
|
|
|
sub write_excel_file {
|
|
print EXCEL_OUTPUT "\nWrite-Only\n";
|
|
print EXCEL_OUTPUT create_excel_output_string("write-only");
|
|
print EXCEL_OUTPUT "\nWrite-Close\n";
|
|
print EXCEL_OUTPUT create_excel_output_string("write-close");
|
|
|
|
if (is_defined("read-only")) {
|
|
print EXCEL_OUTPUT "\nRead-Only\n";
|
|
print EXCEL_OUTPUT create_excel_output_string("read-only");
|
|
print EXCEL_OUTPUT "\nRead-Close\n";
|
|
print EXCEL_OUTPUT create_excel_output_string("read-close");
|
|
}
|
|
}
|
|
|
|
sub create_ascii_output_header {
|
|
my $output_header = " " x 12 . "|";
|
|
my $kb = 1024;
|
|
my $mb = $kb * $kb;
|
|
|
|
foreach my $key (sort { $a <=> $b } keys(%{$results{$num_procs}})) {
|
|
if ($key < $mb) {
|
|
$key /= $kb;
|
|
$output_header = sprintf("$output_header %-4s |", $key . "K");
|
|
} else {
|
|
$key /= $mb;
|
|
$output_header = sprintf("$output_header %-4s |", $key . "M");
|
|
}
|
|
}
|
|
|
|
$output_header;
|
|
}
|
|
|
|
sub create_ascii_output_string {
|
|
my ($t) = @_;
|
|
my $output_content = "";
|
|
my $output_header = create_ascii_output_header;
|
|
|
|
foreach my $procs (sort { $b <=> $a } keys(%results)) {
|
|
$output_content .= "\n$procs Procs";
|
|
$output_content .= "\n$output_header\n";
|
|
$output_content .= "-" x length($output_header);
|
|
$output_content .= "\n POSIX |";
|
|
|
|
foreach my $xfer (sort { $a <=> $b } keys(%{$results{$procs}})) {
|
|
$output_content = sprintf("$output_content %-6s |",
|
|
$results{$procs}{$xfer}[0]{$t});
|
|
}
|
|
|
|
$output_content .= "\n ";
|
|
$output_content .= "-" x (length($output_header) - 4);
|
|
$output_content .= "\n MPI/IO |";
|
|
|
|
foreach my $xfer (sort { $a <=> $b } keys(%{$results{$procs}})) {
|
|
$output_content = sprintf("$output_content %-6s |",
|
|
$results{$procs}{$xfer}[1]{$t});
|
|
}
|
|
|
|
$output_content .= "\n ";
|
|
$output_content .= "-" x (length($output_header) - 4);
|
|
$output_content .= "\n PHDF5 |";
|
|
|
|
foreach my $xfer (sort { $a <=> $b } keys(%{$results{$procs}})) {
|
|
$output_content = sprintf("$output_content %-6s |",
|
|
$results{$procs}{$xfer}[2]{$t});
|
|
}
|
|
|
|
$output_content .= "\n";
|
|
$output_content .= "=" x length($output_header);
|
|
$output_content .= "\n";
|
|
}
|
|
|
|
$output_content;
|
|
}
|
|
|
|
sub write_ascii_file {
|
|
print ASCII_OUTPUT "\nWrite-Only";
|
|
print ASCII_OUTPUT "\n----------\n";
|
|
print ASCII_OUTPUT create_ascii_output_string("write-only");
|
|
print ASCII_OUTPUT "\n\nWrite-Close";
|
|
print ASCII_OUTPUT "\n-----------\n";
|
|
print ASCII_OUTPUT create_ascii_output_string("write-close");
|
|
|
|
if (is_defined("read-only")) {
|
|
print ASCII_OUTPUT "\n\nRead-Only";
|
|
print ASCII_OUTPUT "\n---------\n";
|
|
print ASCII_OUTPUT create_ascii_output_string("read-only");
|
|
print ASCII_OUTPUT "\n\nRead-Close";
|
|
print ASCII_OUTPUT "\n----------\n";
|
|
print ASCII_OUTPUT create_ascii_output_string("read-close");
|
|
}
|
|
}
|
|
|
|
sub draw_plot
|
|
{
|
|
my($p_3d) = @_;
|
|
|
|
if($p_3d)
|
|
{
|
|
$counter = 3;
|
|
print GNUPLOT_PIPE "splot ";
|
|
}
|
|
else
|
|
{
|
|
$counter = 2;
|
|
print GNUPLOT_PIPE "plot ";
|
|
}
|
|
|
|
if($io_type & 1) {
|
|
print GNUPLOT_PIPE " \"gnuplot.data\" using 1:";
|
|
|
|
if($p_3d) { print GNUPLOT_PIPE "2:"; }
|
|
|
|
print GNUPLOT_PIPE $counter . " title 'POSIX' with linespoints";
|
|
$counter = $counter + 1;
|
|
}
|
|
if($io_type & 2) {
|
|
if($io_type & 1) { print GNUPLOT_PIPE ", "; }
|
|
print GNUPLOT_PIPE "\"gnuplot.data\" using 1:";
|
|
|
|
if($p_3d) { print GNUPLOT_PIPE "2:"; }
|
|
|
|
print GNUPLOT_PIPE $counter . " title 'MPIO' with linespoints";
|
|
$counter = $counter + 1;
|
|
if($io_type & 4) { print GNUPLOT_PIPE ", ";}
|
|
}
|
|
if($io_type & 4) {
|
|
print GNUPLOT_PIPE " \"gnuplot.data\" using 1:";
|
|
|
|
if($p_3d) { print GNUPLOT_PIPE "2:"; }
|
|
|
|
print GNUPLOT_PIPE $counter . " title 'PHDF5' with linespoints";
|
|
|
|
}
|
|
print GNUPLOT_PIPE "\n";
|
|
}
|
|
|
|
|
|
sub plot_default_graph1 {
|
|
open(GNUPLOT_DATA_OUTPUT, ">gnuplot.data") or
|
|
die "error: cannot open file gnuplot.data: $!\n";
|
|
|
|
$transfer_buffer_size = 128 if !$transfer_buffer_size;
|
|
$data_type = "write-only" if !$data_type;
|
|
|
|
#set up the plot
|
|
print GNUPLOT_PIPE "set term x11 1\n";
|
|
print GNUPLOT_PIPE "set xlabel \"Number of Processors\"\n";
|
|
print GNUPLOT_PIPE "set title \"" . $data_type . " Performance (Speed vs. Num. Procs)\"\n";
|
|
print GNUPLOT_PIPE "set ylabel \"Bandwdith (MB/s)\"\n";
|
|
print GNUPLOT_PIPE "set label 1 \"Transfer buffer size: " . $transfer_buffer_size . "K\" at graph 0.7, graph 0.7 left \n";
|
|
|
|
#the next line attempts to hack gnuplot to get around it's inability to linearly scale, but logarithmically label an axis
|
|
print GNUPLOT_PIPE "set xtics (\"1\" 1, \"2\" 2, \"4\" 4, \"8\" 8, \"16\" 16, \"32\" 32, \"64\" 64, \"128\" 128, \"256\" 256, \"512\" 512, \"1024\" 1024)\n";
|
|
|
|
|
|
foreach $proc (sort { $a <=> $b }( keys %results ))
|
|
{
|
|
print GNUPLOT_DATA_OUTPUT $proc . "\t";
|
|
if($io_type & 1) {
|
|
print GNUPLOT_DATA_OUTPUT $results{$proc}{$transfer_buffer_size*1024}[0]{$data_type} . "\t";
|
|
}
|
|
if($io_type & 2) {
|
|
print GNUPLOT_DATA_OUTPUT $results{$proc}{$transfer_buffer_size*1024}[1]{$data_type}. "\t";
|
|
}
|
|
if($io_type & 4) {
|
|
print GNUPLOT_DATA_OUTPUT $results{$proc}{$transfer_buffer_size*1024}[2]{$data_type};
|
|
}
|
|
print GNUPLOT_DATA_OUTPUT "\n";
|
|
|
|
}
|
|
|
|
close(GNUPLOT_DATA_OUTPUT);
|
|
|
|
draw_plot(0);
|
|
|
|
unlink(GNUPLOT_DATA_OUTPUT);
|
|
|
|
}
|
|
|
|
|
|
sub plot_default_graph2 {
|
|
open(GNUPLOT_DATA_OUTPUT, ">gnuplot.data") or
|
|
die "error: cannot open file gnuplot.data: $!\n";
|
|
|
|
$num_procs_graph = max(sort { $a <=> $b }( keys %results )) if !$num_procs_graph;
|
|
print "min-rpocs: " . $num_procs_graph;
|
|
$data_type = "write-only" if !$data_type;
|
|
|
|
#set up the plot
|
|
print GNUPLOT_PIPE "set term x11 2\n";
|
|
print GNUPLOT_PIPE "set xlabel \"Transfer Buffer Size (in bytes)\"\n";
|
|
print GNUPLOT_PIPE "set title \"" . $data_type . " Performance (Speed vs. Transfer Buffer Size)\"\n";
|
|
print GNUPLOT_PIPE "set ylabel \"Bandwdith (MB/s)\"\n";
|
|
print GNUPLOT_PIPE "set label 1 \"Procs: " . $num_procs_graph . "\" at graph 0.7, graph 0.7 left \n";
|
|
|
|
#the next line attempts to hack gnuplot to get around it's inability to linearly scale, but logarithmically label an axis
|
|
print GNUPLOT_PIPE "set xtics (\"4K\" 4*1024, \"8K\" 8*1024, \"16K\" 16*1024, \"32K\" 32*1024, \"64K\" 64*1024, \"128K\" 128*1024, \"256K\" 256*1024, \"512K\" 512*1024, \"1M\" 1024*1024, \"2M\" 2048*1024, \"4M\" 4096*1024, \"8M\" 8192*1024, \"16M\" 16384*1024)\n";
|
|
|
|
foreach $xfer (sort {$a <=> $b} ( keys %{$results{$num_procs_graph}} ))
|
|
{
|
|
print GNUPLOT_DATA_OUTPUT $xfer . "\t";
|
|
if($io_type & 1) {
|
|
print GNUPLOT_DATA_OUTPUT $results{$num_procs_graph}{$xfer}[0]{$data_type} . "\t";
|
|
}
|
|
if($io_type & 2) {
|
|
print GNUPLOT_DATA_OUTPUT $results{$num_procs_graph}{$xfer}[1]{$data_type}. "\t";
|
|
}
|
|
if($io_type & 4) {
|
|
print GNUPLOT_DATA_OUTPUT $results{$num_procs_graph}{$xfer}[2]{$data_type};
|
|
}
|
|
print GNUPLOT_DATA_OUTPUT "\n";
|
|
|
|
}
|
|
|
|
close(GNUPLOT_DATA_OUTPUT);
|
|
|
|
draw_plot(0);
|
|
|
|
unlink(GNUPLOT_DATA_OUTPUT);
|
|
}
|
|
|
|
sub plot_3d_graph3 {
|
|
open(GNUPLOT_DATA_OUTPUT, ">gnuplot.data") or
|
|
die "error: cannot open file gnuplot.data: $!\n";
|
|
|
|
#set up the plot
|
|
print GNUPLOT_PIPE "set term x11 3\n";
|
|
print GNUPLOT_PIPE "set xlabel \"Num. Processors\"\n";
|
|
print GNUPLOT_PIPE "set title \"Write Speed v. No. Procs v. Buffer Size\"\n";
|
|
print GNUPLOT_PIPE "set ylabel \"Buffer Size (bytes)\"\n";
|
|
print GNUPLOT_PIPE "set zlabel \"Bandwidth (in MB/s)\"\n";
|
|
print GNUPLOT_PIPE "set nolabel\n";
|
|
print GNUPLOT_PIPE "set dgrid3d 30,30\n";
|
|
print GNUPLOT_PIPE "set hidden3d\n";
|
|
|
|
#the next lines attempts to hack gnuplot to get around it's inability to linearly scale, but logarithmically label an axis
|
|
print GNUPLOT_PIPE "set xtics (\"1\" 1, \"2\" 2, \"4\" 4, \"8\" 8, \"16\" 16, \"32\" 32, \"64\" 64, \"128\" 128, \"256\" 256, \"512\" 512, \"1024\" 1024)\n";
|
|
print GNUPLOT_PIPE "set ytics (\"4K\" 4*1024, \"8K\" 8*1024, \"16K\" 16*1024, \"32K\" 32*1024, \"64K\" 64*1024, \"128K\" 128*1024, \"256K\" 256*1024, \"512K\" 512*1024, \"1M\" 1024*1024, \"2M\" 2048*1024, \"4M\" 4096*1024, \"8M\" 8192*1024, \"16M\" 16384*1024)\n";
|
|
|
|
|
|
#Read speed on z-axis, processors on x, buffer size on y.
|
|
|
|
foreach $proc (sort { $a <=> $b }( keys %results ))
|
|
{
|
|
foreach $xfer (sort {$a <=> $b} ( keys %{$results{$proc}} ))
|
|
{
|
|
print GNUPLOT_DATA_OUTPUT $proc . "\t" . $xfer . "\t";
|
|
if($io_type & 1) {
|
|
print GNUPLOT_DATA_OUTPUT $results{$proc}{$xfer}[0]{"write-only"} . "\t";
|
|
}
|
|
if($io_type & 2) {
|
|
print GNUPLOT_DATA_OUTPUT $results{$proc}{$xfer}[1]{"write-only"}. "\t";
|
|
}
|
|
if($io_type & 4) {
|
|
print GNUPLOT_DATA_OUTPUT $results{$proc}{$xfer}[2]{"write-only"};
|
|
}
|
|
print GNUPLOT_DATA_OUTPUT "\n";
|
|
|
|
}
|
|
}
|
|
|
|
close(GNUPLOT_DATA_OUTPUT);
|
|
|
|
draw_plot(1);
|
|
|
|
unlink(GNUPLOT_DATA_OUTPUT);
|
|
}
|
|
|
|
open(GNUPLOT_PIPE, "| tee gnuplot.script | gnuplot -persist") || die "Couldn't run gnuplot: $!\n";
|
|
GNUPLOT_PIPE->autoflush(1);
|
|
|
|
write_excel_file;
|
|
write_ascii_file;
|
|
plot_default_graph1;
|
|
sleep 1;
|
|
plot_default_graph2;
|
|
sleep 1;
|
|
|
|
plot_3d_graph3 if $plot_3d;
|
|
close(GNUPLOT_PIPE);
|