mirror of
https://github.com/HDFGroup/hdf5.git
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c968525b29
Code cleanup
Description:
Add a bit more debugging information to one failure mode.
Platforms tested:
FreeBSD 4.6 (sleipnir)
5115 lines
185 KiB
C
5115 lines
185 KiB
C
/****************************************************************************
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* NCSA HDF *
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* Software Development Group *
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* National Center for Supercomputing Applications *
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* University of Illinois at Urbana-Champaign *
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* 605 E. Springfield, Champaign IL 61820 *
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* *
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* For conditions of distribution and use, see the accompanying *
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* hdf/COPYING file. *
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* *
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****************************************************************************/
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/* $Id$ */
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/***********************************************************
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*
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* Test program: tselect
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*
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* Test the Dataspace selection functionality
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*
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*************************************************************/
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#include "testhdf5.h"
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#include "hdf5.h"
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#define FILENAME "tselect.h5"
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/* 3-D dataset with fixed dimensions */
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#define SPACE1_NAME "Space1"
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#define SPACE1_RANK 3
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#define SPACE1_DIM1 3
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#define SPACE1_DIM2 15
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#define SPACE1_DIM3 13
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/* 2-D dataset with fixed dimensions */
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#define SPACE2_NAME "Space2"
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#define SPACE2_RANK 2
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#define SPACE2_DIM1 30
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#define SPACE2_DIM2 26
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#define SPACE2A_RANK 1
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#define SPACE2A_DIM1 (SPACE2_DIM1*SPACE2_DIM2)
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/* 2-D dataset with fixed dimensions */
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#define SPACE3_NAME "Space3"
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#define SPACE3_RANK 2
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#define SPACE3_DIM1 15
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#define SPACE3_DIM2 26
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/* 3-D dataset with fixed dimensions */
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#define SPACE4_NAME "Space4"
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#define SPACE4_RANK 3
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#define SPACE4_DIM1 11
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#define SPACE4_DIM2 13
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#define SPACE4_DIM3 17
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/* Number of random hyperslabs to test */
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#define NHYPERSLABS 10
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/* Number of random hyperslab tests performed */
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#define NRAND_HYPER 100
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/* 5-D dataset with fixed dimensions */
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#define SPACE5_NAME "Space5"
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#define SPACE5_RANK 5
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#define SPACE5_DIM1 10
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#define SPACE5_DIM2 10
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#define SPACE5_DIM3 10
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#define SPACE5_DIM4 10
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#define SPACE5_DIM5 10
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/* 1-D dataset with same size as 5-D dataset */
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#define SPACE6_NAME "Space6"
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#define SPACE6_RANK 1
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#define SPACE6_DIM1 (SPACE5_DIM1*SPACE5_DIM2*SPACE5_DIM3*SPACE5_DIM4*SPACE5_DIM5)
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/* 2-D dataset with easy dimension sizes */
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#define SPACE7_NAME "Space7"
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#define SPACE7_RANK 2
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#define SPACE7_DIM1 10
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#define SPACE7_DIM2 10
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#define SPACE7_FILL 254
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/* 4-D dataset with fixed dimensions */
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#define SPACE8_NAME "Space8"
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#define SPACE8_RANK 4
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#define SPACE8_DIM1 11
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#define SPACE8_DIM2 13
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#define SPACE8_DIM3 17
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#define SPACE8_DIM4 19
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/* Element selection information */
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#define POINT1_NPOINTS 10
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/* Chunked dataset information */
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#define DATASETNAME "ChunkArray"
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#define NX_SUB 87 /* hyperslab dimensions */
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#define NY_SUB 61
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#define NZ_SUB 181
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#define NX 87 /* output buffer dimensions */
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#define NY 61
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#define NZ 181
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#define RANK_F 3 /* File dataspace rank */
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#define RANK_M 3 /* Memory dataspace rank */
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#define X 87 /* dataset dimensions */
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#define Y 61
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#define Z 181
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#define CHUNK_X 87 /* chunk dimensions */
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#define CHUNK_Y 61
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#define CHUNK_Z 181
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/* Location comparison function */
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int compare_size_t(const void *s1, const void *s2);
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herr_t test_select_hyper_iter1(void *elem,hid_t type_id, hsize_t ndim, hssize_t *point, void *operator_data);
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herr_t test_select_point_iter1(void *elem,hid_t type_id, hsize_t ndim, hssize_t *point, void *operator_data);
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herr_t test_select_all_iter1(void *elem,hid_t type_id, hsize_t ndim, hssize_t *point, void *operator_data);
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herr_t test_select_none_iter1(void *elem,hid_t type_id, hsize_t ndim, hssize_t *point, void *operator_data);
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herr_t test_select_hyper_iter2(void *_elem, hid_t type_id, hsize_t ndim, hssize_t *point, void *_operator_data);
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herr_t test_select_hyper_iter3(void *elem,hid_t type_id, hsize_t ndim, hssize_t *point, void *operator_data);
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/****************************************************************
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**
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** test_select_hyper_iter1(): Iterator for checking hyperslab iteration
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**
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****************************************************************/
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herr_t
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test_select_hyper_iter1(void *_elem,hid_t UNUSED type_id, hsize_t UNUSED ndim, hssize_t UNUSED *point, void *_operator_data)
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{
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uint8_t *tbuf=(uint8_t *)_elem, /* temporary buffer pointer */
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**tbuf2=(uint8_t **)_operator_data; /* temporary buffer handle */
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if(*tbuf!=**tbuf2)
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return(-1);
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else {
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(*tbuf2)++;
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return(0);
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}
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} /* end test_select_hyper_iter1() */
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/****************************************************************
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**
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** test_select_hyper(): Test basic H5S (dataspace) selection code.
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** Tests hyperslabs of various sizes and dimensionalities.
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**
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****************************************************************/
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static void
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test_select_hyper(hid_t xfer_plist)
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{
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hid_t fid1; /* HDF5 File IDs */
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hid_t dataset; /* Dataset ID */
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hid_t sid1,sid2; /* Dataspace ID */
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hsize_t dims1[] = {SPACE1_DIM1, SPACE1_DIM2, SPACE1_DIM3};
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hsize_t dims2[] = {SPACE2_DIM1, SPACE2_DIM2};
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hsize_t dims3[] = {SPACE3_DIM1, SPACE3_DIM2};
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hssize_t start[SPACE1_RANK]; /* Starting location of hyperslab */
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hsize_t stride[SPACE1_RANK]; /* Stride of hyperslab */
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hsize_t count[SPACE1_RANK]; /* Element count of hyperslab */
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hsize_t block[SPACE1_RANK]; /* Block size of hyperslab */
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uint8_t *wbuf, /* buffer to write to disk */
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*rbuf, /* buffer read from disk */
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*tbuf; /* temporary buffer pointer */
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int i,j; /* Counters */
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herr_t ret; /* Generic return value */
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H5S_class_t ext_type; /* Extent type */
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/* Output message about test being performed */
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MESSAGE(5, ("Testing Hyperslab Selection Functions\n"));
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/* Allocate write & read buffers */
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wbuf=malloc(sizeof(uint8_t)*SPACE2_DIM1*SPACE2_DIM2);
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rbuf=calloc(sizeof(uint8_t),SPACE3_DIM1*SPACE3_DIM2);
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/* Initialize write buffer */
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for(i=0, tbuf=wbuf; i<SPACE2_DIM1; i++)
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for(j=0; j<SPACE2_DIM2; j++)
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*tbuf++=(uint8_t)((i*SPACE2_DIM2)+j);
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/* Create file */
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fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
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CHECK(fid1, FAIL, "H5Fcreate");
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/* Create dataspace for dataset */
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sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
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CHECK(sid1, FAIL, "H5Screate_simple");
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/* Create dataspace for writing buffer */
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sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL);
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CHECK(sid2, FAIL, "H5Screate_simple");
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/* Verify extent type */
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ext_type = H5Sget_simple_extent_type(sid1);
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VERIFY(ext_type, H5S_SIMPLE, "H5Sget_simple_extent_type");
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/* Select 2x15x13 hyperslab for disk dataset */
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start[0]=1; start[1]=0; start[2]=0;
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stride[0]=1; stride[1]=1; stride[2]=1;
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count[0]=2; count[1]=15; count[2]=13;
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block[0]=1; block[1]=1; block[2]=1;
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ret = H5Sselect_hyperslab(sid1,H5S_SELECT_SET,start,stride,count,block);
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CHECK(ret, FAIL, "H5Sselect_hyperslab");
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/* Select 15x26 hyperslab for memory dataset */
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start[0]=15; start[1]=0;
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stride[0]=1; stride[1]=1;
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count[0]=15; count[1]=26;
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block[0]=1; block[1]=1;
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ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
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CHECK(ret, FAIL, "H5Sselect_hyperslab");
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/* Create a dataset */
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dataset=H5Dcreate(fid1,"Dataset1",H5T_NATIVE_UCHAR,sid1,H5P_DEFAULT);
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/* Write selection to disk */
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ret=H5Dwrite(dataset,H5T_NATIVE_UCHAR,sid2,sid1,xfer_plist,wbuf);
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CHECK(ret, FAIL, "H5Dwrite");
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/* Close memory dataspace */
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ret = H5Sclose(sid2);
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CHECK(ret, FAIL, "H5Sclose");
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/* Create dataspace for reading buffer */
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sid2 = H5Screate_simple(SPACE3_RANK, dims3, NULL);
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CHECK(sid2, FAIL, "H5Screate_simple");
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/* Select 15x26 hyperslab for reading memory dataset */
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start[0]=0; start[1]=0;
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stride[0]=1; stride[1]=1;
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count[0]=15; count[1]=26;
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block[0]=1; block[1]=1;
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ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
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CHECK(ret, FAIL, "H5Sselect_hyperslab");
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/* Read selection from disk */
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ret=H5Dread(dataset,H5T_NATIVE_UCHAR,sid2,sid1,xfer_plist,rbuf);
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CHECK(ret, FAIL, "H5Dread");
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/* Check that the values match with a dataset iterator */
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tbuf=wbuf+(15*SPACE2_DIM2);
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ret = H5Diterate(rbuf,H5T_NATIVE_UCHAR,sid2,test_select_hyper_iter1,&tbuf);
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CHECK(ret, FAIL, "H5Diterate");
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/* Close memory dataspace */
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ret = H5Sclose(sid2);
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CHECK(ret, FAIL, "H5Sclose");
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/* Close disk dataspace */
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ret = H5Sclose(sid1);
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CHECK(ret, FAIL, "H5Sclose");
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/* Close Dataset */
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ret = H5Dclose(dataset);
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CHECK(ret, FAIL, "H5Dclose");
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/* Close file */
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ret = H5Fclose(fid1);
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CHECK(ret, FAIL, "H5Fclose");
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/* Free memory buffers */
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free(wbuf);
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free(rbuf);
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} /* test_select_hyper() */
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struct pnt_iter {
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hssize_t coord[POINT1_NPOINTS*2][SPACE2_RANK]; /* Coordinates for point selection */
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uint8_t *buf; /* Buffer the points are in */
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int offset; /* Which point we are looking at */
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};
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/****************************************************************
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**
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** test_select_point_iter1(): Iterator for checking point iteration
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** (This is really ugly code, not a very good example of correct usage - QAK)
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**
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****************************************************************/
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herr_t
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test_select_point_iter1(void *_elem,hid_t UNUSED type_id, hsize_t UNUSED ndim, hssize_t UNUSED *point, void *_operator_data)
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{
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uint8_t *elem=(uint8_t *)_elem; /* Pointer to the element to examine */
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uint8_t *tmp; /* temporary ptr to element in operator data */
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struct pnt_iter *pnt_info=(struct pnt_iter *)_operator_data;
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tmp=pnt_info->buf+(pnt_info->coord[pnt_info->offset][0]*SPACE2_DIM2)+pnt_info->coord[pnt_info->offset][1];
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if(*elem!=*tmp)
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return(-1);
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else {
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pnt_info->offset++;
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return(0);
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}
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} /* end test_select_hyper_iter1() */
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/****************************************************************
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**
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** test_select_point(): Test basic H5S (dataspace) selection code.
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** Tests element selections between dataspaces of various sizes
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** and dimensionalities.
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**
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****************************************************************/
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static void
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test_select_point(hid_t xfer_plist)
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{
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hid_t fid1; /* HDF5 File IDs */
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hid_t dataset; /* Dataset ID */
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hid_t sid1,sid2; /* Dataspace ID */
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hsize_t dims1[] = {SPACE1_DIM1, SPACE1_DIM2, SPACE1_DIM3};
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hsize_t dims2[] = {SPACE2_DIM1, SPACE2_DIM2};
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hsize_t dims3[] = {SPACE3_DIM1, SPACE3_DIM2};
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hssize_t coord1[POINT1_NPOINTS][SPACE1_RANK]; /* Coordinates for point selection */
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hssize_t temp_coord1[POINT1_NPOINTS][SPACE1_RANK]; /* Coordinates for point selection */
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hssize_t coord2[POINT1_NPOINTS][SPACE2_RANK]; /* Coordinates for point selection */
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hssize_t temp_coord2[POINT1_NPOINTS][SPACE2_RANK]; /* Coordinates for point selection */
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hssize_t coord3[POINT1_NPOINTS][SPACE3_RANK]; /* Coordinates for point selection */
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hssize_t temp_coord3[POINT1_NPOINTS][SPACE3_RANK]; /* Coordinates for point selection */
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uint8_t *wbuf, /* buffer to write to disk */
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*rbuf, /* buffer read from disk */
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*tbuf; /* temporary buffer pointer */
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int i,j; /* Counters */
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struct pnt_iter pi; /* Custom Pointer iterator struct */
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herr_t ret; /* Generic return value */
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/* Output message about test being performed */
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MESSAGE(5, ("Testing Element Selection Functions\n"));
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/* Allocate write & read buffers */
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wbuf=malloc(sizeof(uint8_t)*SPACE2_DIM1*SPACE2_DIM2);
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rbuf=calloc(sizeof(uint8_t),SPACE3_DIM1*SPACE3_DIM2);
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/* Initialize write buffer */
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for(i=0, tbuf=wbuf; i<SPACE2_DIM1; i++)
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for(j=0; j<SPACE2_DIM2; j++)
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*tbuf++=(uint8_t)((i*SPACE2_DIM2)+j);
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/* Create file */
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fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
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CHECK(fid1, FAIL, "H5Fcreate");
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/* Create dataspace for dataset */
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sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
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CHECK(sid1, FAIL, "H5Screate_simple");
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/* Create dataspace for write buffer */
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sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL);
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CHECK(sid2, FAIL, "H5Screate_simple");
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/* Select sequence of ten points for disk dataset */
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coord1[0][0]=0; coord1[0][1]=10; coord1[0][2]= 5;
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coord1[1][0]=1; coord1[1][1]= 2; coord1[1][2]= 7;
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coord1[2][0]=2; coord1[2][1]= 4; coord1[2][2]= 9;
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coord1[3][0]=0; coord1[3][1]= 6; coord1[3][2]=11;
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coord1[4][0]=1; coord1[4][1]= 8; coord1[4][2]=13;
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coord1[5][0]=2; coord1[5][1]=12; coord1[5][2]= 0;
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coord1[6][0]=0; coord1[6][1]=14; coord1[6][2]= 2;
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coord1[7][0]=1; coord1[7][1]= 0; coord1[7][2]= 4;
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coord1[8][0]=2; coord1[8][1]= 1; coord1[8][2]= 6;
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coord1[9][0]=0; coord1[9][1]= 3; coord1[9][2]= 8;
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ret = H5Sselect_elements(sid1,H5S_SELECT_SET,POINT1_NPOINTS,(const hssize_t **)coord1);
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CHECK(ret, FAIL, "H5Sselect_elements");
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/* Verify correct elements selected */
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H5Sget_select_elem_pointlist(sid1,(hsize_t)0,(hsize_t)POINT1_NPOINTS,(hsize_t *)temp_coord1);
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for(i=0; i<POINT1_NPOINTS; i++) {
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VERIFY(temp_coord1[i][0],coord1[i][0],"H5Sget_select_elem_pointlist");
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VERIFY(temp_coord1[i][1],coord1[i][1],"H5Sget_select_elem_pointlist");
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VERIFY(temp_coord1[i][2],coord1[i][2],"H5Sget_select_elem_pointlist");
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} /* end for */
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ret = (int)H5Sget_select_npoints(sid1);
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VERIFY(ret, 10, "H5Sget_select_npoints");
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/* Append another sequence of ten points to disk dataset */
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coord1[0][0]=0; coord1[0][1]= 2; coord1[0][2]= 0;
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coord1[1][0]=1; coord1[1][1]=10; coord1[1][2]= 8;
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coord1[2][0]=2; coord1[2][1]= 8; coord1[2][2]=10;
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coord1[3][0]=0; coord1[3][1]= 7; coord1[3][2]=12;
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coord1[4][0]=1; coord1[4][1]= 3; coord1[4][2]=11;
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coord1[5][0]=2; coord1[5][1]= 1; coord1[5][2]= 1;
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coord1[6][0]=0; coord1[6][1]=13; coord1[6][2]= 7;
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coord1[7][0]=1; coord1[7][1]=14; coord1[7][2]= 6;
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coord1[8][0]=2; coord1[8][1]= 2; coord1[8][2]= 5;
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coord1[9][0]=0; coord1[9][1]= 6; coord1[9][2]=13;
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ret = H5Sselect_elements(sid1,H5S_SELECT_APPEND,POINT1_NPOINTS,(const hssize_t **)coord1);
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CHECK(ret, FAIL, "H5Sselect_elements");
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/* Verify correct elements selected */
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H5Sget_select_elem_pointlist(sid1,(hsize_t)POINT1_NPOINTS,(hsize_t)POINT1_NPOINTS,(hsize_t *)temp_coord1);
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for(i=0; i<POINT1_NPOINTS; i++) {
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VERIFY(temp_coord1[i][0],coord1[i][0],"H5Sget_select_elem_pointlist");
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VERIFY(temp_coord1[i][1],coord1[i][1],"H5Sget_select_elem_pointlist");
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VERIFY(temp_coord1[i][2],coord1[i][2],"H5Sget_select_elem_pointlist");
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} /* end for */
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ret = (int)H5Sget_select_npoints(sid1);
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VERIFY(ret, 20, "H5Sget_select_npoints");
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/* Select sequence of ten points for memory dataset */
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coord2[0][0]=12; coord2[0][1]= 3;
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coord2[1][0]=15; coord2[1][1]=13;
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coord2[2][0]= 7; coord2[2][1]=25;
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coord2[3][0]= 0; coord2[3][1]= 6;
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coord2[4][0]=13; coord2[4][1]= 0;
|
||
coord2[5][0]=24; coord2[5][1]=11;
|
||
coord2[6][0]=12; coord2[6][1]=21;
|
||
coord2[7][0]=29; coord2[7][1]= 4;
|
||
coord2[8][0]= 8; coord2[8][1]= 8;
|
||
coord2[9][0]=19; coord2[9][1]=17;
|
||
ret = H5Sselect_elements(sid2,H5S_SELECT_SET,POINT1_NPOINTS,(const hssize_t **)coord2);
|
||
CHECK(ret, FAIL, "H5Sselect_elements");
|
||
|
||
/* Verify correct elements selected */
|
||
H5Sget_select_elem_pointlist(sid2,(hsize_t)0,(hsize_t)POINT1_NPOINTS,(hsize_t *)temp_coord2);
|
||
for(i=0; i<POINT1_NPOINTS; i++) {
|
||
VERIFY(temp_coord2[i][0],coord2[i][0],"H5Sget_select_elem_pointlist");
|
||
VERIFY(temp_coord2[i][1],coord2[i][1],"H5Sget_select_elem_pointlist");
|
||
} /* end for */
|
||
|
||
/* Save points for later iteration */
|
||
/* (these are in the second half of the buffer, because we are prepending */
|
||
/* the next list of points to the beginning of the point selection list) */
|
||
HDmemcpy(((char *)pi.coord)+sizeof(coord2),coord2,sizeof(coord2));
|
||
|
||
ret = (int)H5Sget_select_npoints(sid2);
|
||
VERIFY(ret, 10, "H5Sget_select_npoints");
|
||
|
||
/* Append another sequence of ten points to memory dataset */
|
||
coord2[0][0]=24; coord2[0][1]= 0;
|
||
coord2[1][0]= 2; coord2[1][1]=25;
|
||
coord2[2][0]=13; coord2[2][1]=17;
|
||
coord2[3][0]= 8; coord2[3][1]= 3;
|
||
coord2[4][0]=29; coord2[4][1]= 4;
|
||
coord2[5][0]=11; coord2[5][1]=14;
|
||
coord2[6][0]= 5; coord2[6][1]=22;
|
||
coord2[7][0]=12; coord2[7][1]= 2;
|
||
coord2[8][0]=21; coord2[8][1]=12;
|
||
coord2[9][0]= 9; coord2[9][1]=18;
|
||
ret = H5Sselect_elements(sid2,H5S_SELECT_PREPEND,POINT1_NPOINTS,(const hssize_t **)coord2);
|
||
CHECK(ret, FAIL, "H5Sselect_elements");
|
||
|
||
/* Verify correct elements selected */
|
||
H5Sget_select_elem_pointlist(sid2,(hsize_t)0,(hsize_t)POINT1_NPOINTS,(hsize_t *)temp_coord2);
|
||
for(i=0; i<POINT1_NPOINTS; i++) {
|
||
VERIFY(temp_coord2[i][0],coord2[i][0],"H5Sget_select_elem_pointlist");
|
||
VERIFY(temp_coord2[i][1],coord2[i][1],"H5Sget_select_elem_pointlist");
|
||
} /* end for */
|
||
|
||
ret = (int)H5Sget_select_npoints(sid2);
|
||
VERIFY(ret, 20, "H5Sget_select_npoints");
|
||
|
||
/* Save points for later iteration */
|
||
HDmemcpy(pi.coord,coord2,sizeof(coord2));
|
||
|
||
/* Create a dataset */
|
||
dataset=H5Dcreate(fid1,"Dataset1",H5T_NATIVE_UCHAR,sid1,H5P_DEFAULT);
|
||
|
||
/* Write selection to disk */
|
||
ret=H5Dwrite(dataset,H5T_NATIVE_UCHAR,sid2,sid1,xfer_plist,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Create dataspace for reading buffer */
|
||
sid2 = H5Screate_simple(SPACE3_RANK, dims3, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select sequence of points for read dataset */
|
||
coord3[0][0]= 0; coord3[0][1]= 2;
|
||
coord3[1][0]= 4; coord3[1][1]= 8;
|
||
coord3[2][0]=13; coord3[2][1]=13;
|
||
coord3[3][0]=14; coord3[3][1]=20;
|
||
coord3[4][0]= 7; coord3[4][1]= 9;
|
||
coord3[5][0]= 2; coord3[5][1]= 0;
|
||
coord3[6][0]= 9; coord3[6][1]=19;
|
||
coord3[7][0]= 1; coord3[7][1]=22;
|
||
coord3[8][0]=12; coord3[8][1]=21;
|
||
coord3[9][0]=11; coord3[9][1]= 6;
|
||
ret = H5Sselect_elements(sid2,H5S_SELECT_SET,POINT1_NPOINTS,(const hssize_t **)coord3);
|
||
CHECK(ret, FAIL, "H5Sselect_elements");
|
||
|
||
/* Verify correct elements selected */
|
||
H5Sget_select_elem_pointlist(sid2,(hsize_t)0,(hsize_t)POINT1_NPOINTS,(hsize_t *)temp_coord3);
|
||
for(i=0; i<POINT1_NPOINTS; i++) {
|
||
VERIFY(temp_coord3[i][0],coord3[i][0],"H5Sget_select_elem_pointlist");
|
||
VERIFY(temp_coord3[i][1],coord3[i][1],"H5Sget_select_elem_pointlist");
|
||
} /* end for */
|
||
|
||
ret = (int)H5Sget_select_npoints(sid2);
|
||
VERIFY(ret, 10, "H5Sget_select_npoints");
|
||
|
||
/* Append another sequence of ten points to disk dataset */
|
||
coord3[0][0]=14; coord3[0][1]=25;
|
||
coord3[1][0]= 0; coord3[1][1]= 0;
|
||
coord3[2][0]=11; coord3[2][1]=11;
|
||
coord3[3][0]= 5; coord3[3][1]=14;
|
||
coord3[4][0]= 3; coord3[4][1]= 5;
|
||
coord3[5][0]= 2; coord3[5][1]= 2;
|
||
coord3[6][0]= 7; coord3[6][1]=13;
|
||
coord3[7][0]= 9; coord3[7][1]=16;
|
||
coord3[8][0]=12; coord3[8][1]=22;
|
||
coord3[9][0]=13; coord3[9][1]= 9;
|
||
ret = H5Sselect_elements(sid2,H5S_SELECT_APPEND,POINT1_NPOINTS,(const hssize_t **)coord3);
|
||
CHECK(ret, FAIL, "H5Sselect_elements");
|
||
|
||
/* Verify correct elements selected */
|
||
H5Sget_select_elem_pointlist(sid2,(hsize_t)POINT1_NPOINTS,(hsize_t)POINT1_NPOINTS,(hsize_t *)temp_coord3);
|
||
for(i=0; i<POINT1_NPOINTS; i++) {
|
||
VERIFY(temp_coord3[i][0],coord3[i][0],"H5Sget_select_elem_pointlist");
|
||
VERIFY(temp_coord3[i][1],coord3[i][1],"H5Sget_select_elem_pointlist");
|
||
} /* end for */
|
||
ret = (int)H5Sget_select_npoints(sid2);
|
||
VERIFY(ret, 20, "H5Sget_select_npoints");
|
||
|
||
/* Read selection from disk */
|
||
ret=H5Dread(dataset,H5T_NATIVE_UCHAR,sid2,sid1,xfer_plist,rbuf);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
|
||
/* Check that the values match with a dataset iterator */
|
||
pi.buf=wbuf;
|
||
pi.offset=0;
|
||
ret = H5Diterate(rbuf,H5T_NATIVE_UCHAR,sid2,test_select_point_iter1,&pi);
|
||
CHECK(ret, FAIL, "H5Diterate");
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close disk dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(dataset);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Close file */
|
||
ret = H5Fclose(fid1);
|
||
CHECK(ret, FAIL, "H5Fclose");
|
||
|
||
/* Free memory buffers */
|
||
free(wbuf);
|
||
free(rbuf);
|
||
} /* test_select_point() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_all_iter1(): Iterator for checking all iteration
|
||
**
|
||
**
|
||
****************************************************************/
|
||
herr_t
|
||
test_select_all_iter1(void *_elem,hid_t UNUSED type_id, hsize_t UNUSED ndim, hssize_t UNUSED *point, void *_operator_data)
|
||
{
|
||
uint8_t *tbuf=(uint8_t *)_elem, /* temporary buffer pointer */
|
||
**tbuf2=(uint8_t **)_operator_data; /* temporary buffer handle */
|
||
|
||
if(*tbuf!=**tbuf2)
|
||
return(-1);
|
||
else {
|
||
(*tbuf2)++;
|
||
return(0);
|
||
}
|
||
} /* end test_select_all_iter1() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_none_iter1(): Iterator for checking none iteration
|
||
** (This is never supposed to be called, so it always returns -1)
|
||
**
|
||
****************************************************************/
|
||
herr_t
|
||
test_select_none_iter1(void UNUSED *_elem,hid_t UNUSED type_id, hsize_t UNUSED ndim, hssize_t UNUSED *point, void UNUSED *_operator_data)
|
||
{
|
||
return(-1);
|
||
} /* end test_select_none_iter1() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_all(): Test basic H5S (dataspace) selection code.
|
||
** Tests "all" selections.
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_all(hid_t xfer_plist)
|
||
{
|
||
hid_t fid1; /* HDF5 File IDs */
|
||
hid_t dataset; /* Dataset ID */
|
||
hid_t sid1; /* Dataspace ID */
|
||
hsize_t dims1[] = {SPACE4_DIM1, SPACE4_DIM2, SPACE4_DIM3};
|
||
uint8_t *wbuf, /* buffer to write to disk */
|
||
*rbuf, /* buffer read from disk */
|
||
*tbuf; /* temporary buffer pointer */
|
||
int i,j,k; /* Counters */
|
||
herr_t ret; /* Generic return value */
|
||
H5S_class_t ext_type; /* Extent type */
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing 'All' Selection Functions\n"));
|
||
|
||
/* Allocate write & read buffers */
|
||
wbuf=malloc(sizeof(uint8_t)*SPACE4_DIM1*SPACE4_DIM2*SPACE4_DIM3);
|
||
rbuf=calloc(sizeof(uint8_t),SPACE4_DIM1*SPACE4_DIM2*SPACE4_DIM3);
|
||
|
||
/* Initialize write buffer */
|
||
for(i=0, tbuf=wbuf; i<SPACE4_DIM1; i++)
|
||
for(j=0; j<SPACE4_DIM2; j++)
|
||
for(k=0; k<SPACE4_DIM3; k++)
|
||
*tbuf++=(uint8_t)(((i*SPACE4_DIM2)+j)*SPACE4_DIM3)+k;
|
||
|
||
/* Create file */
|
||
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||
CHECK(fid1, FAIL, "H5Fcreate");
|
||
|
||
/* Create dataspace for dataset */
|
||
sid1 = H5Screate_simple(SPACE4_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Verify extent type */
|
||
ext_type = H5Sget_simple_extent_type(sid1);
|
||
VERIFY(ext_type, H5S_SIMPLE, "H5Sget_simple_extent_type");
|
||
|
||
/* Create a dataset */
|
||
dataset=H5Dcreate(fid1,"Dataset1",H5T_NATIVE_INT,sid1,H5P_DEFAULT);
|
||
|
||
/* Write selection to disk */
|
||
ret=H5Dwrite(dataset,H5T_NATIVE_UCHAR,H5S_ALL,H5S_ALL,xfer_plist,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Read selection from disk */
|
||
ret=H5Dread(dataset,H5T_NATIVE_UCHAR,H5S_ALL,H5S_ALL,xfer_plist,rbuf);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
|
||
/* Check that the values match with a dataset iterator */
|
||
tbuf=wbuf;
|
||
ret = H5Diterate(rbuf,H5T_NATIVE_UCHAR,sid1,test_select_all_iter1,&tbuf);
|
||
CHECK(ret, FAIL, "H5Diterate");
|
||
|
||
/* Close disk dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(dataset);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Close file */
|
||
ret = H5Fclose(fid1);
|
||
CHECK(ret, FAIL, "H5Fclose");
|
||
|
||
/* Free memory buffers */
|
||
free(wbuf);
|
||
free(rbuf);
|
||
} /* test_select_all() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_all_hyper(): Test basic H5S (dataspace) selection code.
|
||
** Tests "all" and hyperslab selections.
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_all_hyper(hid_t xfer_plist)
|
||
{
|
||
hid_t fid1; /* HDF5 File IDs */
|
||
hid_t dataset; /* Dataset ID */
|
||
hid_t sid1,sid2; /* Dataspace ID */
|
||
hsize_t dims1[] = {SPACE3_DIM1, SPACE3_DIM2};
|
||
hsize_t dims2[] = {SPACE2_DIM1, SPACE2_DIM2};
|
||
hsize_t dims3[] = {SPACE3_DIM1, SPACE3_DIM2};
|
||
hssize_t start[SPACE1_RANK]; /* Starting location of hyperslab */
|
||
hsize_t stride[SPACE1_RANK]; /* Stride of hyperslab */
|
||
hsize_t count[SPACE1_RANK]; /* Element count of hyperslab */
|
||
hsize_t block[SPACE1_RANK]; /* Block size of hyperslab */
|
||
uint8_t *wbuf, /* buffer to write to disk */
|
||
*rbuf, /* buffer read from disk */
|
||
*tbuf; /* temporary buffer pointer */
|
||
int i,j; /* Counters */
|
||
herr_t ret; /* Generic return value */
|
||
H5S_class_t ext_type; /* Extent type */
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing 'All' Selection Functions\n"));
|
||
|
||
/* Allocate write & read buffers */
|
||
wbuf=malloc(sizeof(uint8_t)*SPACE2_DIM1*SPACE2_DIM2);
|
||
rbuf=calloc(sizeof(uint8_t),SPACE3_DIM1*SPACE3_DIM2);
|
||
|
||
/* Initialize write buffer */
|
||
for(i=0, tbuf=wbuf; i<SPACE2_DIM1; i++)
|
||
for(j=0; j<SPACE2_DIM2; j++)
|
||
*tbuf++=(uint8_t)((i*SPACE2_DIM2)+j);
|
||
|
||
/* Create file */
|
||
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||
CHECK(fid1, FAIL, "H5Fcreate");
|
||
|
||
/* Create dataspace for dataset */
|
||
sid1 = H5Screate_simple(SPACE3_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Create dataspace for writing buffer */
|
||
sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Verify extent type */
|
||
ext_type = H5Sget_simple_extent_type(sid1);
|
||
VERIFY(ext_type, H5S_SIMPLE, "H5Sget_simple_extent_type");
|
||
|
||
/* Select entire 15x26 extent for disk dataset */
|
||
ret = H5Sselect_all(sid1);
|
||
CHECK(ret, FAIL, "H5Sselect_all");
|
||
|
||
/* Select 15x26 hyperslab for memory dataset */
|
||
start[0]=15; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=15; count[1]=26;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Create a dataset */
|
||
dataset=H5Dcreate(fid1,"Dataset1",H5T_NATIVE_UCHAR,sid1,H5P_DEFAULT);
|
||
|
||
/* Write selection to disk */
|
||
ret=H5Dwrite(dataset,H5T_NATIVE_UCHAR,sid2,sid1,xfer_plist,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Create dataspace for reading buffer */
|
||
sid2 = H5Screate_simple(SPACE3_RANK, dims3, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 15x26 hyperslab for reading memory dataset */
|
||
start[0]=0; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=15; count[1]=26;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Select no extent for disk dataset */
|
||
ret = H5Sselect_none(sid1);
|
||
CHECK(ret, FAIL, "H5Sselect_all");
|
||
|
||
/* Read selection from disk (should fail with no selection defined) */
|
||
ret=H5Dread(dataset,H5T_NATIVE_UCHAR,sid2,sid1,xfer_plist,rbuf);
|
||
VERIFY(ret, FAIL, "H5Dread");
|
||
|
||
/* Select entire 15x26 extent for disk dataset */
|
||
ret = H5Sselect_all(sid1);
|
||
CHECK(ret, FAIL, "H5Sselect_all");
|
||
|
||
/* Read selection from disk (should work now) */
|
||
ret=H5Dread(dataset,H5T_NATIVE_UCHAR,sid2,sid1,xfer_plist,rbuf);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
|
||
/* Check that the values match with a dataset iterator */
|
||
tbuf=wbuf+(15*SPACE2_DIM2);
|
||
ret = H5Diterate(rbuf,H5T_NATIVE_UCHAR,sid2,test_select_all_iter1,&tbuf);
|
||
CHECK(ret, FAIL, "H5Diterate");
|
||
|
||
/* A quick check to make certain that iterating through a "none" selection works */
|
||
ret = H5Sselect_none(sid2);
|
||
CHECK(ret, FAIL, "H5Sselect_all");
|
||
ret = H5Diterate(rbuf,H5T_NATIVE_UCHAR,sid2,test_select_none_iter1,&tbuf);
|
||
CHECK(ret, FAIL, "H5Diterate");
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close disk dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(dataset);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Close file */
|
||
ret = H5Fclose(fid1);
|
||
CHECK(ret, FAIL, "H5Fclose");
|
||
|
||
/* Free memory buffers */
|
||
free(wbuf);
|
||
free(rbuf);
|
||
} /* test_select_all_hyper() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_combo(): Test basic H5S (dataspace) selection code.
|
||
** Tests combinations of element and hyperslab selections between
|
||
** dataspaces of various sizes and dimensionalities.
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_combo(void)
|
||
{
|
||
hid_t fid1; /* HDF5 File IDs */
|
||
hid_t dataset; /* Dataset ID */
|
||
hid_t sid1,sid2; /* Dataspace ID */
|
||
hsize_t dims1[] = {SPACE1_DIM1, SPACE1_DIM2, SPACE1_DIM3};
|
||
hsize_t dims2[] = {SPACE2_DIM1, SPACE2_DIM2};
|
||
hsize_t dims3[] = {SPACE3_DIM1, SPACE3_DIM2};
|
||
hssize_t coord1[POINT1_NPOINTS][SPACE1_RANK]; /* Coordinates for point selection */
|
||
hssize_t start[SPACE1_RANK]; /* Starting location of hyperslab */
|
||
hsize_t stride[SPACE1_RANK]; /* Stride of hyperslab */
|
||
hsize_t count[SPACE1_RANK]; /* Element count of hyperslab */
|
||
hsize_t block[SPACE1_RANK]; /* Block size of hyperslab */
|
||
uint8_t *wbuf, /* buffer to write to disk */
|
||
*rbuf, /* buffer read from disk */
|
||
*tbuf, /* temporary buffer pointer */
|
||
*tbuf2; /* temporary buffer pointer */
|
||
int i,j; /* Counters */
|
||
herr_t ret; /* Generic return value */
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing Combination of Hyperslab & Element Selection Functions\n"));
|
||
|
||
/* Allocate write & read buffers */
|
||
wbuf=malloc(sizeof(uint8_t)*SPACE2_DIM1*SPACE2_DIM2);
|
||
rbuf=calloc(sizeof(uint8_t),SPACE3_DIM1*SPACE3_DIM2);
|
||
|
||
/* Initialize write buffer */
|
||
for(i=0, tbuf=wbuf; i<SPACE2_DIM1; i++)
|
||
for(j=0; j<SPACE2_DIM2; j++)
|
||
*tbuf++=(uint8_t)((i*SPACE2_DIM2)+j);
|
||
|
||
/* Create file */
|
||
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||
CHECK(fid1, FAIL, "H5Fcreate");
|
||
|
||
/* Create dataspace for dataset */
|
||
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Create dataspace for write buffer */
|
||
sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select sequence of ten points for disk dataset */
|
||
coord1[0][0]=0; coord1[0][1]=10; coord1[0][2]= 5;
|
||
coord1[1][0]=1; coord1[1][1]= 2; coord1[1][2]= 7;
|
||
coord1[2][0]=2; coord1[2][1]= 4; coord1[2][2]= 9;
|
||
coord1[3][0]=0; coord1[3][1]= 6; coord1[3][2]=11;
|
||
coord1[4][0]=1; coord1[4][1]= 8; coord1[4][2]=13;
|
||
coord1[5][0]=2; coord1[5][1]=12; coord1[5][2]= 0;
|
||
coord1[6][0]=0; coord1[6][1]=14; coord1[6][2]= 2;
|
||
coord1[7][0]=1; coord1[7][1]= 0; coord1[7][2]= 4;
|
||
coord1[8][0]=2; coord1[8][1]= 1; coord1[8][2]= 6;
|
||
coord1[9][0]=0; coord1[9][1]= 3; coord1[9][2]= 8;
|
||
ret = H5Sselect_elements(sid1,H5S_SELECT_SET,POINT1_NPOINTS,(const hssize_t **)coord1);
|
||
CHECK(ret, FAIL, "H5Sselect_elements");
|
||
|
||
/* Select 1x10 hyperslab for writing memory dataset */
|
||
start[0]=0; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=1; count[1]=10;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Create a dataset */
|
||
dataset=H5Dcreate(fid1,"Dataset1",H5T_NATIVE_UCHAR,sid1,H5P_DEFAULT);
|
||
|
||
/* Write selection to disk */
|
||
ret=H5Dwrite(dataset,H5T_NATIVE_UCHAR,sid2,sid1,H5P_DEFAULT,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Create dataspace for reading buffer */
|
||
sid2 = H5Screate_simple(SPACE3_RANK, dims3, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 10x1 hyperslab for reading memory dataset */
|
||
start[0]=0; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=10; count[1]=1;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Read selection from disk */
|
||
ret=H5Dread(dataset,H5T_NATIVE_UCHAR,sid2,sid1,H5P_DEFAULT,rbuf);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
|
||
/* Compare data read with data written out */
|
||
for(i=0; i<POINT1_NPOINTS; i++) {
|
||
tbuf=wbuf+i;
|
||
tbuf2=rbuf+(i*SPACE3_DIM2);
|
||
if(*tbuf!=*tbuf2) {
|
||
num_errs++;
|
||
printf("element values don't match!, i=%d\n",i);
|
||
} /* end if */
|
||
} /* end for */
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close disk dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(dataset);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Close file */
|
||
ret = H5Fclose(fid1);
|
||
CHECK(ret, FAIL, "H5Fclose");
|
||
|
||
/* Free memory buffers */
|
||
free(wbuf);
|
||
free(rbuf);
|
||
} /* test_select_combo() */
|
||
|
||
int
|
||
compare_size_t(const void *s1, const void *s2)
|
||
{
|
||
if(*(const size_t *)s1<*(const size_t *)s2)
|
||
return(-1);
|
||
else
|
||
if(*(const size_t *)s1>*(const size_t *)s2)
|
||
return(1);
|
||
else
|
||
return(0);
|
||
}
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_hyper_stride(): Test H5S (dataspace) selection code.
|
||
** Tests strided hyperslabs of various sizes and dimensionalities.
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_hyper_stride(hid_t xfer_plist)
|
||
{
|
||
hid_t fid1; /* HDF5 File IDs */
|
||
hid_t dataset; /* Dataset ID */
|
||
hid_t sid1,sid2; /* Dataspace ID */
|
||
hsize_t dims1[] = {SPACE1_DIM1, SPACE1_DIM2, SPACE1_DIM3};
|
||
hsize_t dims2[] = {SPACE2_DIM1, SPACE2_DIM2};
|
||
hsize_t dims3[] = {SPACE3_DIM1, SPACE3_DIM2};
|
||
hssize_t start[SPACE1_RANK]; /* Starting location of hyperslab */
|
||
hsize_t stride[SPACE1_RANK]; /* Stride of hyperslab */
|
||
hsize_t count[SPACE1_RANK]; /* Element count of hyperslab */
|
||
hsize_t block[SPACE1_RANK]; /* Block size of hyperslab */
|
||
uint16_t *wbuf, /* buffer to write to disk */
|
||
*rbuf, /* buffer read from disk */
|
||
*tbuf, /* temporary buffer pointer */
|
||
*tbuf2; /* temporary buffer pointer */
|
||
size_t loc1[72]={ /* Gruesomely ugly way to make certain hyperslab locations are checked correctly */
|
||
27, 28, 29, 53, 54, 55, 79, 80, 81, /* Block #1 */
|
||
32, 33, 34, 58, 59, 60, 84, 85, 86, /* Block #2 */
|
||
157,158,159,183,184,185,209,210,211, /* Block #3 */
|
||
162,163,164,188,189,190,214,215,216, /* Block #4 */
|
||
287,288,289,313,314,315,339,340,341, /* Block #5 */
|
||
292,293,294,318,319,320,344,345,346, /* Block #6 */
|
||
417,418,419,443,444,445,469,470,471, /* Block #7 */
|
||
422,423,424,448,449,450,474,475,476, /* Block #8 */
|
||
};
|
||
size_t loc2[72]={
|
||
0, 1, 2, 26, 27, 28, /* Block #1 */
|
||
4, 5, 6, 30, 31, 32, /* Block #2 */
|
||
8, 9, 10, 34, 35, 36, /* Block #3 */
|
||
12, 13, 14, 38, 39, 40, /* Block #4 */
|
||
104,105,106,130,131,132, /* Block #5 */
|
||
108,109,110,134,135,136, /* Block #6 */
|
||
112,113,114,138,139,140, /* Block #7 */
|
||
116,117,118,142,143,144, /* Block #8 */
|
||
208,209,210,234,235,236, /* Block #9 */
|
||
212,213,214,238,239,240, /* Block #10 */
|
||
216,217,218,242,243,244, /* Block #11 */
|
||
220,221,222,246,247,248, /* Block #12 */
|
||
};
|
||
int i,j; /* Counters */
|
||
herr_t ret; /* Generic return value */
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing Hyperslabs with Strides Functionality\n"));
|
||
|
||
/* Allocate write & read buffers */
|
||
wbuf=malloc(sizeof(uint16_t)*SPACE2_DIM1*SPACE2_DIM2);
|
||
rbuf=calloc(sizeof(uint16_t),SPACE3_DIM1*SPACE3_DIM2);
|
||
|
||
/* Initialize write buffer */
|
||
for(i=0, tbuf=wbuf; i<SPACE2_DIM1; i++)
|
||
for(j=0; j<SPACE2_DIM2; j++)
|
||
*tbuf++=(uint16_t)((i*SPACE2_DIM2)+j);
|
||
|
||
/* Create file */
|
||
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||
CHECK(fid1, FAIL, "H5Fcreate");
|
||
|
||
/* Create dataspace for dataset */
|
||
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Create dataspace for writing buffer */
|
||
sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 2x3x3 count with a stride of 2x4x3 & 1x2x2 block hyperslab for disk dataset */
|
||
start[0]=0; start[1]=0; start[2]=0;
|
||
stride[0]=2; stride[1]=4; stride[2]=3;
|
||
count[0]=2; count[1]=3; count[2]=3;
|
||
block[0]=1; block[1]=2; block[2]=2;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Select 4x2 count with a stride of 5x5 & 3x3 block hyperslab for memory dataset */
|
||
start[0]=1; start[1]=1;
|
||
stride[0]=5; stride[1]=5;
|
||
count[0]=4; count[1]=2;
|
||
block[0]=3; block[1]=3;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Create a dataset */
|
||
dataset=H5Dcreate(fid1,"Dataset1",H5T_STD_U16LE,sid1,H5P_DEFAULT);
|
||
|
||
/* Write selection to disk */
|
||
ret=H5Dwrite(dataset,H5T_NATIVE_USHORT,sid2,sid1,xfer_plist,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Create dataspace for reading buffer */
|
||
sid2 = H5Screate_simple(SPACE3_RANK, dims3, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 3x4 count with a stride of 4x4 & 2x3 block hyperslab for memory dataset */
|
||
start[0]=0; start[1]=0;
|
||
stride[0]=4; stride[1]=4;
|
||
count[0]=3; count[1]=4;
|
||
block[0]=2; block[1]=3;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Read selection from disk */
|
||
ret=H5Dread(dataset,H5T_NATIVE_USHORT,sid2,sid1,xfer_plist,rbuf);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
|
||
/* Sort the locations into the proper order */
|
||
qsort(loc1,72,sizeof(size_t),compare_size_t);
|
||
qsort(loc2,72,sizeof(size_t),compare_size_t);
|
||
/* Compare data read with data written out */
|
||
for(i=0; i<72; i++) {
|
||
tbuf=wbuf+loc1[i];
|
||
tbuf2=rbuf+loc2[i];
|
||
if(*tbuf!=*tbuf2) {
|
||
printf("%d: hyperslab values don't match!, loc1[%d]=%d, loc2[%d]=%d\n",__LINE__,i,(int)loc1[i],i,(int)loc2[i]);
|
||
printf("wbuf=%p, tbuf=%p, rbuf=%p, tbuf2=%p\n",(void *)wbuf,(void *)tbuf,(void *)rbuf,(void *)tbuf2);
|
||
printf("*tbuf=%u, *tbuf2=%u\n",(unsigned)*tbuf,(unsigned)*tbuf2);
|
||
num_errs++;
|
||
} /* end if */
|
||
} /* end for */
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close disk dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(dataset);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Close file */
|
||
ret = H5Fclose(fid1);
|
||
CHECK(ret, FAIL, "H5Fclose");
|
||
|
||
/* Free memory buffers */
|
||
free(wbuf);
|
||
free(rbuf);
|
||
} /* test_select_hyper_stride() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_hyper_contig(): Test H5S (dataspace) selection code.
|
||
** Tests contiguous hyperslabs of various sizes and dimensionalities.
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_hyper_contig(hid_t dset_type, hid_t xfer_plist)
|
||
{
|
||
hid_t fid1; /* HDF5 File IDs */
|
||
hid_t dataset; /* Dataset ID */
|
||
hid_t sid1,sid2; /* Dataspace ID */
|
||
hsize_t dims2[] = {SPACE2_DIM2, SPACE2_DIM1};
|
||
hssize_t start[SPACE1_RANK]; /* Starting location of hyperslab */
|
||
hsize_t stride[SPACE1_RANK]; /* Stride of hyperslab */
|
||
hsize_t count[SPACE1_RANK]; /* Element count of hyperslab */
|
||
hsize_t block[SPACE1_RANK]; /* Block size of hyperslab */
|
||
uint16_t *wbuf, /* buffer to write to disk */
|
||
*rbuf, /* buffer read from disk */
|
||
*tbuf; /* temporary buffer pointer */
|
||
int i,j; /* Counters */
|
||
herr_t ret; /* Generic return value */
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing Contiguous Hyperslabs Functionality\n"));
|
||
|
||
/* Allocate write & read buffers */
|
||
wbuf=malloc(sizeof(uint16_t)*SPACE2_DIM1*SPACE2_DIM2);
|
||
rbuf=calloc(sizeof(uint16_t),SPACE2_DIM1*SPACE2_DIM2);
|
||
|
||
/* Initialize write buffer */
|
||
for(i=0, tbuf=wbuf; i<SPACE2_DIM1; i++)
|
||
for(j=0; j<SPACE2_DIM2; j++)
|
||
*tbuf++=(uint16_t)((i*SPACE2_DIM2)+j);
|
||
|
||
/* Create file */
|
||
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||
CHECK(fid1, FAIL, "H5Fcreate");
|
||
|
||
/* Create dataspace for dataset */
|
||
sid1 = H5Screate_simple(SPACE2_RANK, dims2, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Create dataspace for writing buffer */
|
||
sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 12x10 count with a stride of 1x3 & 3x3 block hyperslab for disk dataset */
|
||
start[0]=0; start[1]=0;
|
||
stride[0]=1; stride[1]=3;
|
||
count[0]=12; count[1]=10;
|
||
block[0]=1; block[1]=3;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Select 4x5 count with a stride of 3x6 & 3x6 block hyperslab for memory dataset */
|
||
start[0]=0; start[1]=0;
|
||
stride[0]=3; stride[1]=6;
|
||
count[0]=4; count[1]=5;
|
||
block[0]=3; block[1]=6;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Create a dataset */
|
||
dataset=H5Dcreate(fid1,"Dataset1",dset_type,sid1,H5P_DEFAULT);
|
||
|
||
/* Write selection to disk */
|
||
ret=H5Dwrite(dataset,H5T_NATIVE_USHORT,sid2,sid1,xfer_plist,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Create dataspace for reading buffer */
|
||
sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 6x5 count with a stride of 2x6 & 2x6 block hyperslab for disk dataset */
|
||
start[0]=0; start[1]=0;
|
||
stride[0]=2; stride[1]=6;
|
||
count[0]=6; count[1]=5;
|
||
block[0]=2; block[1]=6;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Select 3x15 count with a stride of 4x2 & 4x2 block hyperslab for memory dataset */
|
||
start[0]=0; start[1]=0;
|
||
stride[0]=4; stride[1]=2;
|
||
count[0]=3; count[1]=15;
|
||
block[0]=4; block[1]=2;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Read selection from disk */
|
||
ret=H5Dread(dataset,H5T_NATIVE_USHORT,sid2,sid1,xfer_plist,rbuf);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
|
||
/* Compare data read with data written out */
|
||
if(HDmemcmp(rbuf,wbuf,sizeof(uint16_t)*30*12)) {
|
||
printf("hyperslab values don't match! Line=%d\n",__LINE__);
|
||
num_errs++;
|
||
#ifdef QAK
|
||
for(i=0, tbuf=wbuf; i<12; i++)
|
||
for(j=0; j<30; j++)
|
||
printf("i=%d, j=%d, *wbuf=%u, *rbuf=%u\n",i,j,(unsigned)*(wbuf+i*30+j),(unsigned)*(rbuf+i*30+j));
|
||
#endif /* QAK */
|
||
} /* end if */
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close disk dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(dataset);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Close file */
|
||
ret = H5Fclose(fid1);
|
||
CHECK(ret, FAIL, "H5Fclose");
|
||
|
||
/* Free memory buffers */
|
||
free(wbuf);
|
||
free(rbuf);
|
||
} /* test_select_hyper_contig() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_hyper_contig2(): Test H5S (dataspace) selection code.
|
||
** Tests more contiguous hyperslabs of various sizes and dimensionalities.
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_hyper_contig2(hid_t dset_type, hid_t xfer_plist)
|
||
{
|
||
hid_t fid1; /* HDF5 File IDs */
|
||
hid_t dataset; /* Dataset ID */
|
||
hid_t sid1,sid2; /* Dataspace ID */
|
||
hsize_t dims2[] = {SPACE8_DIM4, SPACE8_DIM3, SPACE8_DIM2, SPACE8_DIM1};
|
||
hssize_t start[SPACE8_RANK]; /* Starting location of hyperslab */
|
||
hsize_t count[SPACE8_RANK]; /* Element count of hyperslab */
|
||
uint16_t *wbuf, /* buffer to write to disk */
|
||
*rbuf, /* buffer read from disk */
|
||
*tbuf; /* temporary buffer pointer */
|
||
int i,j,k,l; /* Counters */
|
||
herr_t ret; /* Generic return value */
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing More Contiguous Hyperslabs Functionality\n"));
|
||
|
||
/* Allocate write & read buffers */
|
||
wbuf=malloc(sizeof(uint16_t)*SPACE8_DIM1*SPACE8_DIM2*SPACE8_DIM3*SPACE8_DIM4);
|
||
rbuf=calloc(sizeof(uint16_t),SPACE8_DIM1*SPACE8_DIM2*SPACE8_DIM3*SPACE8_DIM4);
|
||
|
||
/* Initialize write buffer */
|
||
for(i=0, tbuf=wbuf; i<SPACE8_DIM1; i++)
|
||
for(j=0; j<SPACE8_DIM2; j++)
|
||
for(k=0; k<SPACE8_DIM3; k++)
|
||
for(l=0; l<SPACE8_DIM4; l++)
|
||
*tbuf++=(uint16_t)((i*SPACE8_DIM2)+j);
|
||
|
||
/* Create file */
|
||
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||
CHECK(fid1, FAIL, "H5Fcreate");
|
||
|
||
/* Create dataspace for dataset */
|
||
sid1 = H5Screate_simple(SPACE8_RANK, dims2, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Create dataspace for writing buffer */
|
||
sid2 = H5Screate_simple(SPACE8_RANK, dims2, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select contiguous hyperslab for disk dataset */
|
||
start[0]=0; start[1]=0; start[2]=0; start[3]=0;
|
||
count[0]=2; count[1]=SPACE8_DIM3; count[2]=SPACE8_DIM2; count[3]=SPACE8_DIM1;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_SET,start,NULL,count,NULL);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Select contiguous hyperslab in memory */
|
||
start[0]=0; start[1]=0; start[2]=0; start[3]=0;
|
||
count[0]=2; count[1]=SPACE8_DIM3; count[2]=SPACE8_DIM2; count[3]=SPACE8_DIM1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,NULL,count,NULL);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Create a dataset */
|
||
dataset=H5Dcreate(fid1,"Dataset1",dset_type,sid1,H5P_DEFAULT);
|
||
|
||
/* Write selection to disk */
|
||
ret=H5Dwrite(dataset,H5T_NATIVE_USHORT,sid2,sid1,xfer_plist,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Create dataspace for reading buffer */
|
||
sid2 = H5Screate_simple(SPACE8_RANK, dims2, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 6x5 count with a stride of 2x6 & 2x6 block hyperslab for disk dataset */
|
||
start[0]=0; start[1]=0; start[2]=0; start[3]=0;
|
||
count[0]=2; count[1]=SPACE8_DIM3; count[2]=SPACE8_DIM2; count[3]=SPACE8_DIM1;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_SET,start,NULL,count,NULL);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Select 3x15 count with a stride of 4x2 & 4x2 block hyperslab for memory dataset */
|
||
start[0]=0; start[1]=0; start[2]=0; start[3]=0;
|
||
count[0]=2; count[1]=SPACE8_DIM3; count[2]=SPACE8_DIM2; count[3]=SPACE8_DIM1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,NULL,count,NULL);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Read selection from disk */
|
||
ret=H5Dread(dataset,H5T_NATIVE_USHORT,sid2,sid1,xfer_plist,rbuf);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
|
||
/* Compare data read with data written out */
|
||
if(HDmemcmp(rbuf,wbuf,sizeof(uint16_t)*2*SPACE8_DIM3*SPACE8_DIM2*SPACE8_DIM1)) {
|
||
num_errs++;
|
||
printf("Error: hyperslab values don't match!\n");
|
||
#ifdef QAK
|
||
for(i=0, tbuf=wbuf; i<12; i++)
|
||
for(j=0; j<30; j++)
|
||
printf("i=%d, j=%d, *wbuf=%u, *rbuf=%u\n",i,j,(unsigned)*(wbuf+i*30+j),(unsigned)*(rbuf+i*30+j));
|
||
#endif /* QAK */
|
||
} /* end if */
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close disk dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(dataset);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Close file */
|
||
ret = H5Fclose(fid1);
|
||
CHECK(ret, FAIL, "H5Fclose");
|
||
|
||
/* Free memory buffers */
|
||
free(wbuf);
|
||
free(rbuf);
|
||
} /* test_select_hyper_contig2() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_hyper_copy(): Test H5S (dataspace) selection code.
|
||
** Tests copying hyperslab selections
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_hyper_copy(void)
|
||
{
|
||
hid_t fid1; /* HDF5 File IDs */
|
||
hid_t data1,data2; /* Dataset IDs */
|
||
hid_t sid1,sid2,sid3; /* Dataspace IDs */
|
||
hsize_t dims1[] = {SPACE1_DIM1, SPACE1_DIM2, SPACE1_DIM3};
|
||
hsize_t dims2[] = {SPACE2_DIM1, SPACE2_DIM2};
|
||
hsize_t dims3[] = {SPACE3_DIM1, SPACE3_DIM2};
|
||
hssize_t start[SPACE1_RANK]; /* Starting location of hyperslab */
|
||
hsize_t stride[SPACE1_RANK]; /* Stride of hyperslab */
|
||
hsize_t count[SPACE1_RANK]; /* Element count of hyperslab */
|
||
hsize_t block[SPACE1_RANK]; /* Block size of hyperslab */
|
||
uint16_t *wbuf, /* buffer to write to disk */
|
||
*rbuf, /* 1st buffer read from disk */
|
||
*rbuf2, /* 2nd buffer read from disk */
|
||
*tbuf; /* temporary buffer pointer */
|
||
int i,j; /* Counters */
|
||
herr_t ret; /* Generic return value */
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing Hyperslabs with Strides Functionality\n"));
|
||
|
||
/* Allocate write & read buffers */
|
||
wbuf=malloc(sizeof(uint16_t)*SPACE2_DIM1*SPACE2_DIM2);
|
||
rbuf=calloc(sizeof(uint16_t),SPACE3_DIM1*SPACE3_DIM2);
|
||
rbuf2=calloc(sizeof(uint16_t),SPACE3_DIM1*SPACE3_DIM2);
|
||
|
||
/* Initialize write buffer */
|
||
for(i=0, tbuf=wbuf; i<SPACE2_DIM1; i++)
|
||
for(j=0; j<SPACE2_DIM2; j++)
|
||
*tbuf++=(uint16_t)((i*SPACE2_DIM2)+j);
|
||
|
||
/* Create file */
|
||
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||
CHECK(fid1, FAIL, "H5Fcreate");
|
||
|
||
/* Create dataspace for dataset */
|
||
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Create dataspace for writing buffer */
|
||
sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 2x3x3 count with a stride of 2x4x3 & 1x2x2 block hyperslab for disk dataset */
|
||
start[0]=0; start[1]=0; start[2]=0;
|
||
stride[0]=2; stride[1]=4; stride[2]=3;
|
||
count[0]=2; count[1]=3; count[2]=3;
|
||
block[0]=1; block[1]=2; block[2]=2;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Select 4x2 count with a stride of 5x5 & 3x3 block hyperslab for memory dataset */
|
||
start[0]=1; start[1]=1;
|
||
stride[0]=5; stride[1]=5;
|
||
count[0]=4; count[1]=2;
|
||
block[0]=3; block[1]=3;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Make a copy of the dataspace to write */
|
||
sid3 = H5Scopy(sid2);
|
||
CHECK(sid3, FAIL, "H5Scopy");
|
||
|
||
/* Create a dataset */
|
||
data1=H5Dcreate(fid1,"Dataset1",H5T_STD_U16LE,sid1,H5P_DEFAULT);
|
||
|
||
/* Write selection to disk */
|
||
ret=H5Dwrite(data1,H5T_STD_U16LE,sid2,sid1,H5P_DEFAULT,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Create another dataset */
|
||
data2=H5Dcreate(fid1,"Dataset2",H5T_STD_U16LE,sid1,H5P_DEFAULT);
|
||
|
||
/* Write selection to disk */
|
||
ret=H5Dwrite(data2,H5T_STD_U16LE,sid3,sid1,H5P_DEFAULT,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid3);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Create dataspace for reading buffer */
|
||
sid2 = H5Screate_simple(SPACE3_RANK, dims3, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 3x4 count with a stride of 4x4 & 2x3 block hyperslab for memory dataset */
|
||
start[0]=0; start[1]=0;
|
||
stride[0]=4; stride[1]=4;
|
||
count[0]=3; count[1]=4;
|
||
block[0]=2; block[1]=3;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Make a copy of the dataspace to read */
|
||
sid3 = H5Scopy(sid2);
|
||
CHECK(sid3, FAIL, "H5Scopy");
|
||
|
||
/* Read selection from disk */
|
||
ret=H5Dread(data1,H5T_STD_U16LE,sid2,sid1,H5P_DEFAULT,rbuf);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
|
||
/* Read selection from disk */
|
||
ret=H5Dread(data2,H5T_STD_U16LE,sid3,sid1,H5P_DEFAULT,rbuf2);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
|
||
/* Compare data read with data written out */
|
||
if(HDmemcmp(rbuf,rbuf2,sizeof(uint16_t)*SPACE3_DIM1*SPACE3_DIM2)) {
|
||
printf("hyperslab values don't match! Line=%d\n",__LINE__);
|
||
num_errs++;
|
||
#ifdef QAK
|
||
for(i=0; i<SPACE3_DIM1; i++)
|
||
for(j=0; j<SPACE3_DIM2; j++)
|
||
if((unsigned)*(rbuf+i*SPACE3_DIM2+j)!=(unsigned)*(rbuf2+i*SPACE3_DIM2+j))
|
||
printf("i=%d, j=%d, *rbuf=%u, *rbuf2=%u\n",i,j,(unsigned)*(rbuf+i*SPACE3_DIM2+j),(unsigned)*(rbuf2+i*SPACE3_DIM2+j));
|
||
#endif /* QAK */
|
||
} /* end if */
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close 2nd memory dataspace */
|
||
ret = H5Sclose(sid3);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close disk dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(data1);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(data2);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Close file */
|
||
ret = H5Fclose(fid1);
|
||
CHECK(ret, FAIL, "H5Fclose");
|
||
|
||
/* Free memory buffers */
|
||
free(wbuf);
|
||
free(rbuf);
|
||
free(rbuf2);
|
||
} /* test_select_hyper_copy() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_point_copy(): Test H5S (dataspace) selection code.
|
||
** Tests copying point selections
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_point_copy(void)
|
||
{
|
||
hid_t fid1; /* HDF5 File IDs */
|
||
hid_t data1,data2; /* Dataset IDs */
|
||
hid_t sid1,sid2,sid3; /* Dataspace IDs */
|
||
hsize_t dims1[] = {SPACE1_DIM1, SPACE1_DIM2, SPACE1_DIM3};
|
||
hsize_t dims2[] = {SPACE2_DIM1, SPACE2_DIM2};
|
||
hsize_t dims3[] = {SPACE3_DIM1, SPACE3_DIM2};
|
||
hssize_t coord1[POINT1_NPOINTS][SPACE1_RANK]; /* Coordinates for point selection */
|
||
hssize_t coord2[POINT1_NPOINTS][SPACE2_RANK]; /* Coordinates for point selection */
|
||
hssize_t coord3[POINT1_NPOINTS][SPACE3_RANK]; /* Coordinates for point selection */
|
||
uint16_t *wbuf, /* buffer to write to disk */
|
||
*rbuf, /* 1st buffer read from disk */
|
||
*rbuf2, /* 2nd buffer read from disk */
|
||
*tbuf; /* temporary buffer pointer */
|
||
int i,j; /* Counters */
|
||
herr_t ret; /* Generic return value */
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing Hyperslabs with Strides Functionality\n"));
|
||
|
||
/* Allocate write & read buffers */
|
||
wbuf=malloc(sizeof(uint16_t)*SPACE2_DIM1*SPACE2_DIM2);
|
||
rbuf=calloc(sizeof(uint16_t),SPACE3_DIM1*SPACE3_DIM2);
|
||
rbuf2=calloc(sizeof(uint16_t),SPACE3_DIM1*SPACE3_DIM2);
|
||
|
||
/* Initialize write buffer */
|
||
for(i=0, tbuf=wbuf; i<SPACE2_DIM1; i++)
|
||
for(j=0; j<SPACE2_DIM2; j++)
|
||
*tbuf++=(uint16_t)((i*SPACE2_DIM2)+j);
|
||
|
||
/* Create file */
|
||
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||
CHECK(fid1, FAIL, "H5Fcreate");
|
||
|
||
/* Create dataspace for dataset */
|
||
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Create dataspace for writing buffer */
|
||
sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select sequence of ten points for disk dataset */
|
||
coord1[0][0]=0; coord1[0][1]=10; coord1[0][2]= 5;
|
||
coord1[1][0]=1; coord1[1][1]= 2; coord1[1][2]= 7;
|
||
coord1[2][0]=2; coord1[2][1]= 4; coord1[2][2]= 9;
|
||
coord1[3][0]=0; coord1[3][1]= 6; coord1[3][2]=11;
|
||
coord1[4][0]=1; coord1[4][1]= 8; coord1[4][2]=13;
|
||
coord1[5][0]=2; coord1[5][1]=12; coord1[5][2]= 0;
|
||
coord1[6][0]=0; coord1[6][1]=14; coord1[6][2]= 2;
|
||
coord1[7][0]=1; coord1[7][1]= 0; coord1[7][2]= 4;
|
||
coord1[8][0]=2; coord1[8][1]= 1; coord1[8][2]= 6;
|
||
coord1[9][0]=0; coord1[9][1]= 3; coord1[9][2]= 8;
|
||
ret = H5Sselect_elements(sid1,H5S_SELECT_SET,POINT1_NPOINTS,(const hssize_t **)coord1);
|
||
CHECK(ret, FAIL, "H5Sselect_elements");
|
||
|
||
/* Select sequence of ten points for write dataset */
|
||
coord2[0][0]=12; coord2[0][1]= 3;
|
||
coord2[1][0]=15; coord2[1][1]=13;
|
||
coord2[2][0]= 7; coord2[2][1]=25;
|
||
coord2[3][0]= 0; coord2[3][1]= 6;
|
||
coord2[4][0]=13; coord2[4][1]= 0;
|
||
coord2[5][0]=24; coord2[5][1]=11;
|
||
coord2[6][0]=12; coord2[6][1]=21;
|
||
coord2[7][0]=29; coord2[7][1]= 4;
|
||
coord2[8][0]= 8; coord2[8][1]= 8;
|
||
coord2[9][0]=19; coord2[9][1]=17;
|
||
ret = H5Sselect_elements(sid2,H5S_SELECT_SET,POINT1_NPOINTS,(const hssize_t **)coord2);
|
||
CHECK(ret, FAIL, "H5Sselect_elements");
|
||
|
||
/* Make a copy of the dataspace to write */
|
||
sid3 = H5Scopy(sid2);
|
||
CHECK(sid3, FAIL, "H5Scopy");
|
||
|
||
/* Create a dataset */
|
||
data1=H5Dcreate(fid1,"Dataset1",H5T_STD_U16LE,sid1,H5P_DEFAULT);
|
||
|
||
/* Write selection to disk */
|
||
ret=H5Dwrite(data1,H5T_STD_U16LE,sid2,sid1,H5P_DEFAULT,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Create another dataset */
|
||
data2=H5Dcreate(fid1,"Dataset2",H5T_STD_U16LE,sid1,H5P_DEFAULT);
|
||
|
||
/* Write selection to disk */
|
||
ret=H5Dwrite(data2,H5T_STD_U16LE,sid3,sid1,H5P_DEFAULT,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid3);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Create dataspace for reading buffer */
|
||
sid2 = H5Screate_simple(SPACE3_RANK, dims3, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select sequence of points for read dataset */
|
||
coord3[0][0]= 0; coord3[0][1]= 2;
|
||
coord3[1][0]= 4; coord3[1][1]= 8;
|
||
coord3[2][0]=13; coord3[2][1]=13;
|
||
coord3[3][0]=14; coord3[3][1]=25;
|
||
coord3[4][0]= 7; coord3[4][1]= 9;
|
||
coord3[5][0]= 2; coord3[5][1]= 0;
|
||
coord3[6][0]= 9; coord3[6][1]=19;
|
||
coord3[7][0]= 1; coord3[7][1]=22;
|
||
coord3[8][0]=12; coord3[8][1]=21;
|
||
coord3[9][0]=11; coord3[9][1]= 6;
|
||
ret = H5Sselect_elements(sid2,H5S_SELECT_SET,POINT1_NPOINTS,(const hssize_t **)coord3);
|
||
CHECK(ret, FAIL, "H5Sselect_elements");
|
||
|
||
/* Make a copy of the dataspace to read */
|
||
sid3 = H5Scopy(sid2);
|
||
CHECK(sid3, FAIL, "H5Scopy");
|
||
|
||
/* Read selection from disk */
|
||
ret=H5Dread(data1,H5T_STD_U16LE,sid2,sid1,H5P_DEFAULT,rbuf);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
|
||
/* Read selection from disk */
|
||
ret=H5Dread(data2,H5T_STD_U16LE,sid3,sid1,H5P_DEFAULT,rbuf2);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
|
||
/* Compare data read with data written out */
|
||
if(HDmemcmp(rbuf,rbuf2,sizeof(uint16_t)*SPACE3_DIM1*SPACE3_DIM2)) {
|
||
printf("point values don't match!\n");
|
||
num_errs++;
|
||
} /* end if */
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close 2nd memory dataspace */
|
||
ret = H5Sclose(sid3);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close disk dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(data1);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(data2);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Close file */
|
||
ret = H5Fclose(fid1);
|
||
CHECK(ret, FAIL, "H5Fclose");
|
||
|
||
/* Free memory buffers */
|
||
free(wbuf);
|
||
free(rbuf);
|
||
free(rbuf2);
|
||
} /* test_select_point_copy() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_hyper_offset(): Test basic H5S (dataspace) selection code.
|
||
** Tests hyperslabs of various sizes and dimensionalities with selection
|
||
** offsets.
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_hyper_offset(void)
|
||
{
|
||
hid_t fid1; /* HDF5 File IDs */
|
||
hid_t dataset; /* Dataset ID */
|
||
hid_t sid1,sid2; /* Dataspace ID */
|
||
hsize_t dims1[] = {SPACE1_DIM1, SPACE1_DIM2, SPACE1_DIM3};
|
||
hsize_t dims2[] = {SPACE2_DIM1, SPACE2_DIM2};
|
||
hsize_t dims3[] = {SPACE3_DIM1, SPACE3_DIM2};
|
||
hssize_t start[SPACE1_RANK]; /* Starting location of hyperslab */
|
||
hsize_t stride[SPACE1_RANK]; /* Stride of hyperslab */
|
||
hsize_t count[SPACE1_RANK]; /* Element count of hyperslab */
|
||
hsize_t block[SPACE1_RANK]; /* Block size of hyperslab */
|
||
hssize_t offset[SPACE1_RANK]; /* Offset of selection */
|
||
uint8_t *wbuf, /* buffer to write to disk */
|
||
*rbuf, /* buffer read from disk */
|
||
*tbuf, /* temporary buffer pointer */
|
||
*tbuf2; /* temporary buffer pointer */
|
||
int i,j; /* Counters */
|
||
herr_t ret; /* Generic return value */
|
||
htri_t valid; /* Generic boolean return value */
|
||
H5S_class_t ext_type; /* Extent type */
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing Hyperslab Selection Functions with Offsets\n"));
|
||
|
||
/* Allocate write & read buffers */
|
||
wbuf=malloc(sizeof(uint8_t)*SPACE2_DIM1*SPACE2_DIM2);
|
||
rbuf=calloc(sizeof(uint8_t),SPACE3_DIM1*SPACE3_DIM2);
|
||
|
||
/* Initialize write buffer */
|
||
for(i=0, tbuf=wbuf; i<SPACE2_DIM1; i++)
|
||
for(j=0; j<SPACE2_DIM2; j++)
|
||
*tbuf++=(uint8_t)((i*SPACE2_DIM2)+j);
|
||
|
||
/* Create file */
|
||
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||
CHECK(fid1, FAIL, "H5Fcreate");
|
||
|
||
/* Create dataspace for dataset */
|
||
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Create dataspace for writing buffer */
|
||
sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Verify extent type */
|
||
ext_type = H5Sget_simple_extent_type(sid1);
|
||
VERIFY(ext_type, H5S_SIMPLE, "H5Sget_simple_extent_type");
|
||
|
||
/* Select 2x15x13 hyperslab for disk dataset */
|
||
start[0]=1; start[1]=0; start[2]=0;
|
||
stride[0]=1; stride[1]=1; stride[2]=1;
|
||
count[0]=2; count[1]=15; count[2]=13;
|
||
block[0]=1; block[1]=1; block[2]=1;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Check a valid offset */
|
||
offset[0]=-1; offset[1]=0; offset[2]=0;
|
||
ret = H5Soffset_simple(sid1,offset);
|
||
CHECK(ret, FAIL, "H5Soffset_simple");
|
||
valid = H5Sselect_valid(sid1);
|
||
VERIFY(valid, TRUE, "H5Sselect_valid");
|
||
|
||
/* Check an invalid offset */
|
||
offset[0]=10; offset[1]=0; offset[2]=0;
|
||
ret = H5Soffset_simple(sid1,offset);
|
||
CHECK(ret, FAIL, "H5Soffset_simple");
|
||
valid = H5Sselect_valid(sid1);
|
||
VERIFY(valid, FALSE, "H5Sselect_valid");
|
||
|
||
/* Reset offset */
|
||
offset[0]=0; offset[1]=0; offset[2]=0;
|
||
ret = H5Soffset_simple(sid1,offset);
|
||
CHECK(ret, FAIL, "H5Soffset_simple");
|
||
valid = H5Sselect_valid(sid1);
|
||
VERIFY(valid, TRUE, "H5Sselect_valid");
|
||
|
||
/* Select 15x26 hyperslab for memory dataset */
|
||
start[0]=15; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=15; count[1]=26;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Choose a valid offset for the memory dataspace */
|
||
offset[0]=-10; offset[1]=0;
|
||
ret = H5Soffset_simple(sid2,offset);
|
||
CHECK(ret, FAIL, "H5Soffset_simple");
|
||
valid = H5Sselect_valid(sid2);
|
||
VERIFY(valid, TRUE, "H5Sselect_valid");
|
||
|
||
/* Create a dataset */
|
||
dataset=H5Dcreate(fid1,"Dataset1",H5T_NATIVE_UCHAR,sid1,H5P_DEFAULT);
|
||
|
||
/* Write selection to disk */
|
||
ret=H5Dwrite(dataset,H5T_NATIVE_UCHAR,sid2,sid1,H5P_DEFAULT,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Create dataspace for reading buffer */
|
||
sid2 = H5Screate_simple(SPACE3_RANK, dims3, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 15x26 hyperslab for reading memory dataset */
|
||
start[0]=0; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=15; count[1]=26;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Read selection from disk */
|
||
ret=H5Dread(dataset,H5T_NATIVE_UCHAR,sid2,sid1,H5P_DEFAULT,rbuf);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
|
||
/* Compare data read with data written out */
|
||
for(i=0; i<SPACE3_DIM1; i++) {
|
||
tbuf=wbuf+((i+5)*SPACE2_DIM2);
|
||
tbuf2=rbuf+(i*SPACE3_DIM2);
|
||
for(j=0; j<SPACE3_DIM2; j++, tbuf++, tbuf2++) {
|
||
if(*tbuf!=*tbuf2) {
|
||
printf("%d: hyperslab values don't match!, i=%d, j=%d, *tbuf=%u, *tbuf2=%u\n",__LINE__,i,j,(unsigned)*tbuf,(unsigned)*tbuf2);
|
||
num_errs++;
|
||
} /* end if */
|
||
} /* end for */
|
||
} /* end for */
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close disk dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(dataset);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Close file */
|
||
ret = H5Fclose(fid1);
|
||
CHECK(ret, FAIL, "H5Fclose");
|
||
|
||
/* Free memory buffers */
|
||
free(wbuf);
|
||
free(rbuf);
|
||
} /* test_select_hyper_offset() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_hyper_offset2(): Test basic H5S (dataspace) selection code.
|
||
** Tests optimized hyperslab I/O with selection offsets.
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_hyper_offset2(void)
|
||
{
|
||
hid_t fid1; /* HDF5 File IDs */
|
||
hid_t dataset; /* Dataset ID */
|
||
hid_t sid1,sid2; /* Dataspace ID */
|
||
hsize_t dims1[] = {SPACE7_DIM1, SPACE7_DIM2};
|
||
hsize_t dims2[] = {SPACE7_DIM1, SPACE7_DIM2};
|
||
hssize_t start[SPACE7_RANK]; /* Starting location of hyperslab */
|
||
hsize_t count[SPACE7_RANK]; /* Element count of hyperslab */
|
||
hssize_t offset[SPACE7_RANK]; /* Offset of selection */
|
||
uint8_t *wbuf, /* buffer to write to disk */
|
||
*rbuf, /* buffer read from disk */
|
||
*tbuf, /* temporary buffer pointer */
|
||
*tbuf2; /* temporary buffer pointer */
|
||
int i,j; /* Counters */
|
||
herr_t ret; /* Generic return value */
|
||
htri_t valid; /* Generic boolean return value */
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing More Hyperslab Selection Functions with Offsets\n"));
|
||
|
||
/* Allocate write & read buffers */
|
||
wbuf=malloc(sizeof(uint8_t)*SPACE7_DIM1*SPACE7_DIM2);
|
||
rbuf=calloc(sizeof(uint8_t),SPACE7_DIM1*SPACE7_DIM2);
|
||
|
||
/* Initialize write buffer */
|
||
for(i=0, tbuf=wbuf; i<SPACE7_DIM1; i++)
|
||
for(j=0; j<SPACE7_DIM2; j++)
|
||
*tbuf++=(uint8_t)((i*SPACE7_DIM2)+j);
|
||
|
||
/* Create file */
|
||
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||
CHECK(fid1, FAIL, "H5Fcreate");
|
||
|
||
/* Create dataspace for dataset */
|
||
sid1 = H5Screate_simple(SPACE7_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Create dataspace for writing buffer */
|
||
sid2 = H5Screate_simple(SPACE7_RANK, dims2, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 4x10 hyperslab for disk dataset */
|
||
start[0]=1; start[1]=0;
|
||
count[0]=4; count[1]=10;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_SET,start,NULL,count,NULL);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Set offset */
|
||
offset[0]=1; offset[1]=0;
|
||
ret = H5Soffset_simple(sid1,offset);
|
||
CHECK(ret, FAIL, "H5Soffset_simple");
|
||
valid = H5Sselect_valid(sid1);
|
||
VERIFY(valid, TRUE, "H5Sselect_valid");
|
||
|
||
/* Select 4x10 hyperslab for memory dataset */
|
||
start[0]=1; start[1]=0;
|
||
count[0]=4; count[1]=10;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,NULL,count,NULL);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Choose a valid offset for the memory dataspace */
|
||
offset[0]=2; offset[1]=0;
|
||
ret = H5Soffset_simple(sid2,offset);
|
||
CHECK(ret, FAIL, "H5Soffset_simple");
|
||
valid = H5Sselect_valid(sid2);
|
||
VERIFY(valid, TRUE, "H5Sselect_valid");
|
||
|
||
/* Create a dataset */
|
||
dataset=H5Dcreate(fid1,"Dataset1",H5T_NATIVE_UCHAR,sid1,H5P_DEFAULT);
|
||
|
||
/* Write selection to disk */
|
||
ret=H5Dwrite(dataset,H5T_NATIVE_UCHAR,sid2,sid1,H5P_DEFAULT,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Read selection from disk */
|
||
ret=H5Dread(dataset,H5T_NATIVE_UCHAR,sid2,sid1,H5P_DEFAULT,rbuf);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
|
||
/* Compare data read with data written out */
|
||
for(i=0; i<4; i++) {
|
||
tbuf=wbuf+((i+3)*SPACE7_DIM2);
|
||
tbuf2=rbuf+((i+3)*SPACE7_DIM2);
|
||
for(j=0; j<SPACE7_DIM2; j++, tbuf++, tbuf2++) {
|
||
if(*tbuf!=*tbuf2) {
|
||
printf("%d: hyperslab values don't match!, i=%d, j=%d, *tbuf=%u, *tbuf2=%u\n",__LINE__,i,j,(unsigned)*tbuf,(unsigned)*tbuf2);
|
||
num_errs++;
|
||
} /* end if */
|
||
} /* end for */
|
||
} /* end for */
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close disk dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(dataset);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Close file */
|
||
ret = H5Fclose(fid1);
|
||
CHECK(ret, FAIL, "H5Fclose");
|
||
|
||
/* Free memory buffers */
|
||
free(wbuf);
|
||
free(rbuf);
|
||
} /* test_select_hyper_offset2() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_point_offset(): Test basic H5S (dataspace) selection code.
|
||
** Tests element selections between dataspaces of various sizes
|
||
** and dimensionalities with selection offsets.
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_point_offset(void)
|
||
{
|
||
hid_t fid1; /* HDF5 File IDs */
|
||
hid_t dataset; /* Dataset ID */
|
||
hid_t sid1,sid2; /* Dataspace ID */
|
||
hsize_t dims1[] = {SPACE1_DIM1, SPACE1_DIM2, SPACE1_DIM3};
|
||
hsize_t dims2[] = {SPACE2_DIM1, SPACE2_DIM2};
|
||
hsize_t dims3[] = {SPACE3_DIM1, SPACE3_DIM2};
|
||
hssize_t coord1[POINT1_NPOINTS][SPACE1_RANK]; /* Coordinates for point selection */
|
||
hssize_t coord2[POINT1_NPOINTS][SPACE2_RANK]; /* Coordinates for point selection */
|
||
hssize_t coord3[POINT1_NPOINTS][SPACE3_RANK]; /* Coordinates for point selection */
|
||
hssize_t offset[SPACE1_RANK]; /* Offset of selection */
|
||
uint8_t *wbuf, /* buffer to write to disk */
|
||
*rbuf, /* buffer read from disk */
|
||
*tbuf, /* temporary buffer pointer */
|
||
*tbuf2; /* temporary buffer pointer */
|
||
int i,j; /* Counters */
|
||
herr_t ret; /* Generic return value */
|
||
htri_t valid; /* Generic boolean return value */
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing Element Selection Functions\n"));
|
||
|
||
/* Allocate write & read buffers */
|
||
wbuf=malloc(sizeof(uint8_t)*SPACE2_DIM1*SPACE2_DIM2);
|
||
rbuf=calloc(sizeof(uint8_t),SPACE3_DIM1*SPACE3_DIM2);
|
||
|
||
/* Initialize write buffer */
|
||
for(i=0, tbuf=wbuf; i<SPACE2_DIM1; i++)
|
||
for(j=0; j<SPACE2_DIM2; j++)
|
||
*tbuf++=(uint8_t)((i*SPACE2_DIM2)+j);
|
||
|
||
/* Create file */
|
||
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||
CHECK(fid1, FAIL, "H5Fcreate");
|
||
|
||
/* Create dataspace for dataset */
|
||
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Create dataspace for write buffer */
|
||
sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select sequence of ten points for disk dataset */
|
||
coord1[0][0]=0; coord1[0][1]=10; coord1[0][2]= 5;
|
||
coord1[1][0]=1; coord1[1][1]= 2; coord1[1][2]= 7;
|
||
coord1[2][0]=2; coord1[2][1]= 4; coord1[2][2]= 9;
|
||
coord1[3][0]=0; coord1[3][1]= 6; coord1[3][2]=11;
|
||
coord1[4][0]=1; coord1[4][1]= 8; coord1[4][2]=12;
|
||
coord1[5][0]=2; coord1[5][1]=12; coord1[5][2]= 0;
|
||
coord1[6][0]=0; coord1[6][1]=14; coord1[6][2]= 2;
|
||
coord1[7][0]=1; coord1[7][1]= 0; coord1[7][2]= 4;
|
||
coord1[8][0]=2; coord1[8][1]= 1; coord1[8][2]= 6;
|
||
coord1[9][0]=0; coord1[9][1]= 3; coord1[9][2]= 8;
|
||
ret = H5Sselect_elements(sid1,H5S_SELECT_SET,POINT1_NPOINTS,(const hssize_t **)coord1);
|
||
CHECK(ret, FAIL, "H5Sselect_elements");
|
||
|
||
/* Check a valid offset */
|
||
offset[0]=0; offset[1]=0; offset[2]=1;
|
||
ret = H5Soffset_simple(sid1,offset);
|
||
CHECK(ret, FAIL, "H5Soffset_simple");
|
||
valid = H5Sselect_valid(sid1);
|
||
VERIFY(valid, TRUE, "H5Sselect_valid");
|
||
|
||
/* Check an invalid offset */
|
||
offset[0]=10; offset[1]=0; offset[2]=0;
|
||
ret = H5Soffset_simple(sid1,offset);
|
||
CHECK(ret, FAIL, "H5Soffset_simple");
|
||
valid = H5Sselect_valid(sid1);
|
||
VERIFY(valid, FALSE, "H5Sselect_valid");
|
||
|
||
/* Reset offset */
|
||
offset[0]=0; offset[1]=0; offset[2]=0;
|
||
ret = H5Soffset_simple(sid1,offset);
|
||
CHECK(ret, FAIL, "H5Soffset_simple");
|
||
valid = H5Sselect_valid(sid1);
|
||
VERIFY(valid, TRUE, "H5Sselect_valid");
|
||
|
||
/* Select sequence of ten points for write dataset */
|
||
coord2[0][0]=12; coord2[0][1]= 3;
|
||
coord2[1][0]=15; coord2[1][1]=13;
|
||
coord2[2][0]= 7; coord2[2][1]=24;
|
||
coord2[3][0]= 0; coord2[3][1]= 6;
|
||
coord2[4][0]=13; coord2[4][1]= 0;
|
||
coord2[5][0]=24; coord2[5][1]=11;
|
||
coord2[6][0]=12; coord2[6][1]=21;
|
||
coord2[7][0]=23; coord2[7][1]= 4;
|
||
coord2[8][0]= 8; coord2[8][1]= 8;
|
||
coord2[9][0]=19; coord2[9][1]=17;
|
||
ret = H5Sselect_elements(sid2,H5S_SELECT_SET,POINT1_NPOINTS,(const hssize_t **)coord2);
|
||
CHECK(ret, FAIL, "H5Sselect_elements");
|
||
|
||
/* Choose a valid offset for the memory dataspace */
|
||
offset[0]=5; offset[1]=1;
|
||
ret = H5Soffset_simple(sid2,offset);
|
||
CHECK(ret, FAIL, "H5Soffset_simple");
|
||
valid = H5Sselect_valid(sid2);
|
||
VERIFY(valid, TRUE, "H5Sselect_valid");
|
||
|
||
/* Create a dataset */
|
||
dataset=H5Dcreate(fid1,"Dataset1",H5T_NATIVE_UCHAR,sid1,H5P_DEFAULT);
|
||
|
||
/* Write selection to disk */
|
||
ret=H5Dwrite(dataset,H5T_NATIVE_UCHAR,sid2,sid1,H5P_DEFAULT,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Create dataspace for reading buffer */
|
||
sid2 = H5Screate_simple(SPACE3_RANK, dims3, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select sequence of points for read dataset */
|
||
coord3[0][0]= 0; coord3[0][1]= 2;
|
||
coord3[1][0]= 4; coord3[1][1]= 8;
|
||
coord3[2][0]=13; coord3[2][1]=13;
|
||
coord3[3][0]=14; coord3[3][1]=25;
|
||
coord3[4][0]= 7; coord3[4][1]= 9;
|
||
coord3[5][0]= 2; coord3[5][1]= 0;
|
||
coord3[6][0]= 9; coord3[6][1]=19;
|
||
coord3[7][0]= 1; coord3[7][1]=22;
|
||
coord3[8][0]=12; coord3[8][1]=21;
|
||
coord3[9][0]=11; coord3[9][1]= 6;
|
||
ret = H5Sselect_elements(sid2,H5S_SELECT_SET,POINT1_NPOINTS,(const hssize_t **)coord3);
|
||
CHECK(ret, FAIL, "H5Sselect_elements");
|
||
|
||
/* Read selection from disk */
|
||
ret=H5Dread(dataset,H5T_NATIVE_UCHAR,sid2,sid1,H5P_DEFAULT,rbuf);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
|
||
/* Compare data read with data written out */
|
||
for(i=0; i<POINT1_NPOINTS; i++) {
|
||
tbuf=wbuf+((coord2[i][0]+offset[0])*SPACE2_DIM2)+coord2[i][1]+offset[1];
|
||
tbuf2=rbuf+(coord3[i][0]*SPACE3_DIM2)+coord3[i][1];
|
||
if(*tbuf!=*tbuf2) {
|
||
printf("element values don't match!, i=%d\n",i);
|
||
num_errs++;
|
||
} /* end if */
|
||
} /* end for */
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close disk dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(dataset);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Close file */
|
||
ret = H5Fclose(fid1);
|
||
CHECK(ret, FAIL, "H5Fclose");
|
||
|
||
/* Free memory buffers */
|
||
free(wbuf);
|
||
free(rbuf);
|
||
} /* test_select_point_offset() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_hyper_union(): Test basic H5S (dataspace) selection code.
|
||
** Tests unions of hyperslabs of various sizes and dimensionalities.
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_hyper_union(void)
|
||
{
|
||
hid_t fid1; /* HDF5 File IDs */
|
||
hid_t dataset; /* Dataset ID */
|
||
hid_t sid1,sid2; /* Dataspace ID */
|
||
hid_t xfer; /* Dataset Transfer Property List ID */
|
||
hsize_t dims1[] = {SPACE1_DIM1, SPACE1_DIM2, SPACE1_DIM3};
|
||
hsize_t dims2[] = {SPACE2_DIM1, SPACE2_DIM2};
|
||
hsize_t dims3[] = {SPACE3_DIM1, SPACE3_DIM2};
|
||
hssize_t start[SPACE1_RANK]; /* Starting location of hyperslab */
|
||
hsize_t stride[SPACE1_RANK]; /* Stride of hyperslab */
|
||
hsize_t count[SPACE1_RANK]; /* Element count of hyperslab */
|
||
hsize_t block[SPACE1_RANK]; /* Block size of hyperslab */
|
||
size_t begin[SPACE2_DIM1]= /* Offset within irregular block */
|
||
{0,0,0,0,0,0,0,0,0,0, /* First ten rows start at offset 0 */
|
||
5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5,5}; /* Next eighteen rows start at offset 5 */
|
||
size_t len[SPACE2_DIM1]= /* Len of each row within irregular block */
|
||
{10,10,10,10,10,10,10,10, /* First eight rows are 10 long */
|
||
20,20, /* Next two rows are 20 long */
|
||
15,15,15,15,15,15,15,15,15,15,15,15,15,15,15,15}; /* Next eighteen rows are 15 long */
|
||
uint8_t *wbuf, /* buffer to write to disk */
|
||
*rbuf, /* buffer read from disk */
|
||
*tbuf, /* temporary buffer pointer */
|
||
*tbuf2; /* temporary buffer pointer */
|
||
int i,j; /* Counters */
|
||
herr_t ret; /* Generic return value */
|
||
hsize_t npoints; /* Number of elements in selection */
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing Hyperslab Selection Functions with unions of hyperslabs\n"));
|
||
|
||
/* Allocate write & read buffers */
|
||
wbuf=malloc(sizeof(uint8_t)*SPACE2_DIM1*SPACE2_DIM2);
|
||
rbuf=calloc(sizeof(uint8_t),SPACE3_DIM1*SPACE3_DIM2);
|
||
|
||
/* Initialize write buffer */
|
||
for(i=0, tbuf=wbuf; i<SPACE2_DIM1; i++)
|
||
for(j=0; j<SPACE2_DIM2; j++)
|
||
*tbuf++=(uint8_t)((i*SPACE2_DIM2)+j);
|
||
|
||
/* Create file */
|
||
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||
CHECK(fid1, FAIL, "H5Fcreate");
|
||
|
||
/* Test simple case of one block overlapping another */
|
||
/* Create dataspace for dataset */
|
||
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Create dataspace for writing buffer */
|
||
sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 2x15x13 hyperslab for disk dataset */
|
||
start[0]=1; start[1]=0; start[2]=0;
|
||
stride[0]=1; stride[1]=1; stride[2]=1;
|
||
count[0]=2; count[1]=15; count[2]=13;
|
||
block[0]=1; block[1]=1; block[2]=1;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
npoints = H5Sget_select_npoints(sid1);
|
||
VERIFY(npoints, 2*15*13, "H5Sget_select_npoints");
|
||
|
||
/* Select 8x26 hyperslab for memory dataset */
|
||
start[0]=15; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=8; count[1]=26;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Union overlapping 8x26 hyperslab for memory dataset (to form a 15x26 selection) */
|
||
start[0]=22; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=8; count[1]=26;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_OR,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
npoints = H5Sget_select_npoints(sid2);
|
||
VERIFY(npoints, 15*26, "H5Sget_select_npoints");
|
||
|
||
/* Create a dataset */
|
||
dataset=H5Dcreate(fid1,"Dataset1",H5T_NATIVE_UCHAR,sid1,H5P_DEFAULT);
|
||
|
||
/* Write selection to disk */
|
||
ret=H5Dwrite(dataset,H5T_NATIVE_UCHAR,sid2,sid1,H5P_DEFAULT,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Create dataspace for reading buffer */
|
||
sid2 = H5Screate_simple(SPACE3_RANK, dims3, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 15x26 hyperslab for reading memory dataset */
|
||
start[0]=0; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=15; count[1]=26;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Read selection from disk */
|
||
ret=H5Dread(dataset,H5T_NATIVE_UCHAR,sid2,sid1,H5P_DEFAULT,rbuf);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
|
||
/* Compare data read with data written out */
|
||
for(i=0; i<SPACE3_DIM1; i++) {
|
||
tbuf=wbuf+((i+15)*SPACE2_DIM2);
|
||
tbuf2=rbuf+(i*SPACE3_DIM2);
|
||
for(j=0; j<SPACE3_DIM2; j++, tbuf++, tbuf2++) {
|
||
if(*tbuf!=*tbuf2) {
|
||
printf("%d: hyperslab values don't match!, i=%d, j=%d, *tbuf=%d, *tbuf2=%d\n",__LINE__,i,j,(int)*tbuf,(int)*tbuf2);
|
||
num_errs++;
|
||
} /* end if */
|
||
} /* end for */
|
||
} /* end for */
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close disk dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(dataset);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Test simple case of several block overlapping another */
|
||
/* Create dataspace for dataset */
|
||
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Create dataspace for writing buffer */
|
||
sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 2x15x13 hyperslab for disk dataset */
|
||
start[0]=1; start[1]=0; start[2]=0;
|
||
stride[0]=1; stride[1]=1; stride[2]=1;
|
||
count[0]=2; count[1]=15; count[2]=13;
|
||
block[0]=1; block[1]=1; block[2]=1;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Select 8x15 hyperslab for memory dataset */
|
||
start[0]=15; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=8; count[1]=15;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Union overlapping 8x15 hyperslab for memory dataset (to form a 15x15 selection) */
|
||
start[0]=22; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=8; count[1]=15;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_OR,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Union overlapping 15x15 hyperslab for memory dataset (to form a 15x26 selection) */
|
||
start[0]=15; start[1]=11;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=15; count[1]=15;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_OR,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
npoints = H5Sget_select_npoints(sid2);
|
||
VERIFY(npoints, 15*26, "H5Sget_select_npoints");
|
||
|
||
/* Create a dataset */
|
||
dataset=H5Dcreate(fid1,"Dataset2",H5T_NATIVE_UCHAR,sid1,H5P_DEFAULT);
|
||
|
||
/* Write selection to disk */
|
||
ret=H5Dwrite(dataset,H5T_NATIVE_UCHAR,sid2,sid1,H5P_DEFAULT,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Create dataspace for reading buffer */
|
||
sid2 = H5Screate_simple(SPACE3_RANK, dims3, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 15x26 hyperslab for reading memory dataset */
|
||
start[0]=0; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=15; count[1]=26;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Read selection from disk */
|
||
ret=H5Dread(dataset,H5T_NATIVE_UCHAR,sid2,sid1,H5P_DEFAULT,rbuf);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
|
||
/* Compare data read with data written out */
|
||
for(i=0; i<SPACE3_DIM1; i++) {
|
||
tbuf=wbuf+((i+15)*SPACE2_DIM2);
|
||
tbuf2=rbuf+(i*SPACE3_DIM2);
|
||
for(j=0; j<SPACE3_DIM2; j++, tbuf++, tbuf2++) {
|
||
if(*tbuf!=*tbuf2) {
|
||
printf("%d: hyperslab values don't match!, i=%d, j=%d, *tbuf=%d, *tbuf2=%d\n",__LINE__,i,j,(int)*tbuf,(int)*tbuf2);
|
||
num_errs++;
|
||
} /* end if */
|
||
} /* end for */
|
||
} /* end for */
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close disk dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(dataset);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Test disjoint case of two non-overlapping blocks */
|
||
/* Create dataspace for dataset */
|
||
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Create dataspace for writing buffer */
|
||
sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 2x15x13 hyperslab for disk dataset */
|
||
start[0]=1; start[1]=0; start[2]=0;
|
||
stride[0]=1; stride[1]=1; stride[2]=1;
|
||
count[0]=2; count[1]=15; count[2]=13;
|
||
block[0]=1; block[1]=1; block[2]=1;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Select 7x26 hyperslab for memory dataset */
|
||
start[0]=1; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=7; count[1]=26;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Union non-overlapping 8x26 hyperslab for memory dataset (to form a 15x26 disjoint selection) */
|
||
start[0]=22; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=8; count[1]=26;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_OR,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
npoints = H5Sget_select_npoints(sid2);
|
||
VERIFY(npoints, 15*26, "H5Sget_select_npoints");
|
||
|
||
/* Create a dataset */
|
||
dataset=H5Dcreate(fid1,"Dataset3",H5T_NATIVE_UCHAR,sid1,H5P_DEFAULT);
|
||
|
||
/* Write selection to disk */
|
||
ret=H5Dwrite(dataset,H5T_NATIVE_UCHAR,sid2,sid1,H5P_DEFAULT,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Create dataspace for reading buffer */
|
||
sid2 = H5Screate_simple(SPACE3_RANK, dims3, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 15x26 hyperslab for reading memory dataset */
|
||
start[0]=0; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=15; count[1]=26;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Read selection from disk */
|
||
ret=H5Dread(dataset,H5T_NATIVE_UCHAR,sid2,sid1,H5P_DEFAULT,rbuf);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
|
||
/* Compare data read with data written out */
|
||
for(i=0; i<SPACE3_DIM1; i++) {
|
||
/* Jump over gap in middle */
|
||
if(i<7)
|
||
tbuf=wbuf+((i+1)*SPACE2_DIM2);
|
||
else
|
||
tbuf=wbuf+((i+15)*SPACE2_DIM2);
|
||
tbuf2=rbuf+(i*SPACE3_DIM2);
|
||
for(j=0; j<SPACE3_DIM2; j++, tbuf++, tbuf2++) {
|
||
if(*tbuf!=*tbuf2) {
|
||
printf("%d: hyperslab values don't match!, i=%d, j=%d, *tbuf=%d, *tbuf2=%d\n",__LINE__,i,j,(int)*tbuf,(int)*tbuf2);
|
||
num_errs++;
|
||
} /* end if */
|
||
} /* end for */
|
||
} /* end for */
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close disk dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(dataset);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Test disjoint case of two non-overlapping blocks with hyperslab caching turned off */
|
||
/* Create dataspace for dataset */
|
||
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Create dataspace for writing buffer */
|
||
sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 2x15x13 hyperslab for disk dataset */
|
||
start[0]=1; start[1]=0; start[2]=0;
|
||
stride[0]=1; stride[1]=1; stride[2]=1;
|
||
count[0]=2; count[1]=15; count[2]=13;
|
||
block[0]=1; block[1]=1; block[2]=1;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Select 7x26 hyperslab for memory dataset */
|
||
start[0]=1; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=7; count[1]=26;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Union non-overlapping 8x26 hyperslab for memory dataset (to form a 15x26 disjoint selection) */
|
||
start[0]=22; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=8; count[1]=26;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_OR,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
npoints = H5Sget_select_npoints(sid2);
|
||
VERIFY(npoints, 15*26, "H5Sget_select_npoints");
|
||
|
||
/* Create a dataset */
|
||
dataset=H5Dcreate(fid1,"Dataset4",H5T_NATIVE_UCHAR,sid1,H5P_DEFAULT);
|
||
CHECK(dataset, FAIL, "H5Dcreate");
|
||
|
||
xfer = H5Pcreate (H5P_DATASET_XFER);
|
||
CHECK(xfer, FAIL, "H5Pcreate");
|
||
|
||
#ifdef H5_WANT_H5_V1_4_COMPAT
|
||
ret = H5Pset_hyper_cache(xfer,0,1);
|
||
CHECK(ret, FAIL, "H5Pset_hyper_cache");
|
||
#endif /* H5_WANT_H5_V1_4_COMPAT */
|
||
|
||
/* Write selection to disk */
|
||
ret=H5Dwrite(dataset,H5T_NATIVE_UCHAR,sid2,sid1,xfer,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Create dataspace for reading buffer */
|
||
sid2 = H5Screate_simple(SPACE3_RANK, dims3, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 15x26 hyperslab for reading memory dataset */
|
||
start[0]=0; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=15; count[1]=26;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Read selection from disk */
|
||
ret=H5Dread(dataset,H5T_NATIVE_UCHAR,sid2,sid1,xfer,rbuf);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
|
||
/* Close transfer property list */
|
||
ret = H5Pclose(xfer);
|
||
CHECK(ret, FAIL, "H5Pclose");
|
||
|
||
/* Compare data read with data written out */
|
||
for(i=0; i<SPACE3_DIM1; i++) {
|
||
/* Jump over gap in middle */
|
||
if(i<7)
|
||
tbuf=wbuf+((i+1)*SPACE2_DIM2);
|
||
else
|
||
tbuf=wbuf+((i+15)*SPACE2_DIM2);
|
||
tbuf2=rbuf+(i*SPACE3_DIM2);
|
||
for(j=0; j<SPACE3_DIM2; j++, tbuf++, tbuf2++) {
|
||
if(*tbuf!=*tbuf2) {
|
||
printf("%d: hyperslab values don't match!, i=%d, j=%d, *tbuf=%d, *tbuf2=%d\n",__LINE__,i,j,(int)*tbuf,(int)*tbuf2);
|
||
num_errs++;
|
||
} /* end if */
|
||
} /* end for */
|
||
} /* end for */
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close disk dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(dataset);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Test case of two blocks which overlap corners and must be split */
|
||
/* Create dataspace for dataset */
|
||
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Create dataspace for writing buffer */
|
||
sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 2x15x13 hyperslab for disk dataset */
|
||
start[0]=1; start[1]=0; start[2]=0;
|
||
stride[0]=1; stride[1]=1; stride[2]=1;
|
||
count[0]=2; count[1]=15; count[2]=13;
|
||
block[0]=1; block[1]=1; block[2]=1;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Select 10x10 hyperslab for memory dataset */
|
||
start[0]=0; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=10; count[1]=10;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Union overlapping 15x20 hyperslab for memory dataset (forming a irregularly shaped region) */
|
||
start[0]=8; start[1]=5;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=20; count[1]=15;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_OR,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
npoints = H5Sget_select_npoints(sid2);
|
||
VERIFY(npoints, 15*26, "H5Sget_select_npoints");
|
||
|
||
/* Create a dataset */
|
||
dataset=H5Dcreate(fid1,"Dataset5",H5T_NATIVE_UCHAR,sid1,H5P_DEFAULT);
|
||
|
||
/* Write selection to disk */
|
||
ret=H5Dwrite(dataset,H5T_NATIVE_UCHAR,sid2,sid1,H5P_DEFAULT,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Create dataspace for reading buffer */
|
||
sid2 = H5Screate_simple(SPACE3_RANK, dims3, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 15x26 hyperslab for reading memory dataset */
|
||
start[0]=0; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=15; count[1]=26;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Read selection from disk */
|
||
ret=H5Dread(dataset,H5T_NATIVE_UCHAR,sid2,sid1,H5P_DEFAULT,rbuf);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
|
||
/* Compare data read with data written out */
|
||
for(i=0,tbuf2=rbuf; i<SPACE2_DIM1; i++) {
|
||
tbuf=wbuf+(i*SPACE2_DIM2)+begin[i];
|
||
for(j=0; j<(int)len[i]; j++, tbuf++, tbuf2++) {
|
||
if(*tbuf!=*tbuf2) {
|
||
printf("%d: hyperslab values don't match!, i=%d, j=%d, *tbuf=%d, *tbuf2=%d\n",__LINE__,i,j,(int)*tbuf,(int)*tbuf2);
|
||
num_errs++;
|
||
} /* end if */
|
||
} /* end for */
|
||
} /* end for */
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close disk dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(dataset);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Close file */
|
||
ret = H5Fclose(fid1);
|
||
CHECK(ret, FAIL, "H5Fclose");
|
||
|
||
/* Free memory buffers */
|
||
free(wbuf);
|
||
free(rbuf);
|
||
} /* test_select_hyper_union() */
|
||
|
||
#ifdef NEW_HYPERSLAB_API
|
||
/****************************************************************
|
||
**
|
||
** test_select_hyper_union_stagger(): Test basic H5S (dataspace) selection code.
|
||
** Tests unions of staggered hyperslabs. (Uses H5Scombine_hyperslab
|
||
** and H5Sselect_select instead of H5Sselect_hyperslab)
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_hyper_union_stagger(void)
|
||
{
|
||
hid_t file_id; /* File ID */
|
||
hid_t dset_id; /* Dataset ID */
|
||
hid_t dataspace; /* File dataspace ID */
|
||
hid_t memspace; /* Memory dataspace ID */
|
||
hid_t tmp_space; /* Temporary dataspace ID */
|
||
hid_t tmp2_space; /* Another emporary dataspace ID */
|
||
hsize_t dimsm[2]={7,7}; /* Memory array dimensions */
|
||
hsize_t dimsf[2]={6,5}; /* File array dimensions */
|
||
hsize_t count[2]={3,1}; /* 1st Hyperslab size */
|
||
hsize_t count2[2]={3,1}; /* 2nd Hyperslab size */
|
||
hsize_t count3[2]={2,1}; /* 3rd Hyperslab size */
|
||
hssize_t offset[2]={0,0}; /* 1st Hyperslab offset */
|
||
hssize_t offset2[2]={2,1}; /* 2nd Hyperslab offset */
|
||
hssize_t offset3[2]={4,2}; /* 3rd Hyperslab offset */
|
||
hsize_t count_out[2]={4,2}; /* Hyperslab size in memory */
|
||
hssize_t offset_out[2]={0,3}; /* Hyperslab offset in memory */
|
||
int data[6][5]; /* Data to write */
|
||
int data_out[7][7]; /* Data read in */
|
||
int input_loc[8][2]={{0,0},
|
||
{1,0},
|
||
{2,0},
|
||
{2,1},
|
||
{3,1},
|
||
{4,1},
|
||
{4,2},
|
||
{5,2}};
|
||
int output_loc[8][2]={{0,3},
|
||
{0,4},
|
||
{1,3},
|
||
{1,4},
|
||
{2,3},
|
||
{2,4},
|
||
{3,3},
|
||
{3,4}};
|
||
int dsetrank=2; /* File Dataset rank */
|
||
int memrank=2; /* Memory Dataset rank */
|
||
int i,j; /* Local counting variables */
|
||
herr_t error;
|
||
hsize_t stride[2]={1,1};
|
||
hsize_t block[2]={1,1};
|
||
|
||
/* Initialize data to write */
|
||
for(i=0; i<6; i++)
|
||
for(j=0; j<5; j++)
|
||
data[i][j] = j*10 + i;
|
||
|
||
/* Create file */
|
||
file_id=H5Fcreate(FILENAME,H5F_ACC_TRUNC,H5P_DEFAULT,H5P_DEFAULT);
|
||
CHECK(file_id, FAIL, "H5Fcreate");
|
||
|
||
/* Create File Dataspace */
|
||
dataspace=H5Screate_simple(dsetrank,dimsf,NULL);
|
||
CHECK(dataspace, FAIL, "H5Screate_simple");
|
||
|
||
/* Create File Dataset */
|
||
dset_id=H5Dcreate(file_id,"IntArray",H5T_NATIVE_INT,dataspace,H5P_DEFAULT);
|
||
CHECK(dset_id, FAIL, "H5Dcreate");
|
||
|
||
/* Write File Dataset */
|
||
error=H5Dwrite(dset_id,H5T_NATIVE_INT,dataspace,dataspace,H5P_DEFAULT,data);
|
||
CHECK(error, FAIL, "H5Dwrite");
|
||
|
||
/* Close things */
|
||
error=H5Sclose(dataspace);
|
||
CHECK(error, FAIL, "H5Sclose");
|
||
error=H5Dclose(dset_id);
|
||
CHECK(error, FAIL, "H5Dclose");
|
||
error=H5Fclose(file_id);
|
||
CHECK(error, FAIL, "H5Fclose");
|
||
|
||
/* Initialize intput buffer */
|
||
memset(data_out,0,7*7*sizeof(int));
|
||
|
||
/* Open file */
|
||
file_id=H5Fopen(FILENAME,H5F_ACC_RDONLY,H5P_DEFAULT);
|
||
CHECK(file_id, FAIL, "H5Fopen");
|
||
|
||
/* Open dataset */
|
||
dset_id=H5Dopen(file_id,"IntArray");
|
||
CHECK(dset_id, FAIL, "H5Dopen");
|
||
|
||
/* Get the dataspace */
|
||
dataspace=H5Dget_space(dset_id);
|
||
CHECK(dataspace, FAIL, "H5Dget_space");
|
||
|
||
/* Select the hyperslabs */
|
||
error=H5Sselect_hyperslab(dataspace,H5S_SELECT_SET,offset,stride,count,block);
|
||
CHECK(error, FAIL, "H5Sselect_hyperslab");
|
||
tmp_space=H5Scombine_hyperslab(dataspace,H5S_SELECT_OR,offset2,stride,count2,block);
|
||
CHECK(tmp_space, FAIL, "H5Scombine_hyperslab");
|
||
|
||
/* Copy the file dataspace and select hyperslab */
|
||
tmp2_space=H5Scopy(dataspace);
|
||
CHECK(tmp2_space, FAIL, "H5Scopy");
|
||
error=H5Sselect_hyperslab(tmp2_space,H5S_SELECT_SET,offset3,stride,count3,block);
|
||
CHECK(error, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Combine the copied dataspace with the temporary dataspace */
|
||
error=H5Sselect_select(tmp_space,H5S_SELECT_OR,tmp2_space);
|
||
CHECK(error, FAIL, "H5Sselect_select");
|
||
|
||
/* Create Memory Dataspace */
|
||
memspace=H5Screate_simple(memrank,dimsm,NULL);
|
||
CHECK(memspace, FAIL, "H5Screate_simple");
|
||
|
||
/* Select hyperslab in memory */
|
||
error=H5Sselect_hyperslab(memspace,H5S_SELECT_SET,offset_out,stride,count_out,block);
|
||
CHECK(error, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Read File Dataset */
|
||
error=H5Dread(dset_id,H5T_NATIVE_INT,memspace,tmp_space,H5P_DEFAULT,data_out);
|
||
CHECK(error, FAIL, "H5Dread");
|
||
|
||
/* Verify input data */
|
||
for(i=0; i<8; i++) {
|
||
if(data[input_loc[i][0]][input_loc[i][1]]!=data_out[output_loc[i][0]][output_loc[i][1]]) {
|
||
printf("input data #%d is wrong!\n",i);
|
||
printf("input_loc=[%d][%d]\n",input_loc[i][0],input_loc[i][1]);
|
||
printf("output_loc=[%d][%d]\n",output_loc[i][0],output_loc[i][1]);
|
||
printf("data=%d\n",data[input_loc[i][0]][input_loc[i][1]]);
|
||
printf("data_out=%d\n",data_out[output_loc[i][0]][output_loc[i][1]]);
|
||
num_errs++;
|
||
} /* end if */
|
||
} /* end for */
|
||
|
||
/* Close things */
|
||
error=H5Sclose(tmp2_space);
|
||
CHECK(error, FAIL, "H5Sclose");
|
||
error=H5Sclose(tmp_space);
|
||
CHECK(error, FAIL, "H5Sclose");
|
||
error=H5Sclose(dataspace);
|
||
CHECK(error, FAIL, "H5Sclose");
|
||
error=H5Sclose(memspace);
|
||
CHECK(error, FAIL, "H5Sclose");
|
||
error=H5Dclose(dset_id);
|
||
CHECK(error, FAIL, "H5Dclose");
|
||
error=H5Fclose(file_id);
|
||
CHECK(error, FAIL, "H5Fclose");
|
||
}
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_hyper_union_3d(): Test basic H5S (dataspace) selection code.
|
||
** Tests unions of hyperslabs in 3-D (Uses H5Scombine_hyperslab
|
||
** and H5Scombine_select instead of H5Sselect_hyperslab)
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_hyper_union_3d(void)
|
||
{
|
||
hid_t fid1; /* HDF5 File IDs */
|
||
hid_t dataset; /* Dataset ID */
|
||
hid_t sid1,sid2; /* Dataspace ID */
|
||
hid_t tmp_space; /* Temporary Dataspace ID */
|
||
hid_t tmp2_space; /* Another temporary Dataspace ID */
|
||
hsize_t dims1[] = {SPACE1_DIM1, SPACE1_DIM2, SPACE1_DIM3};
|
||
hsize_t dims2[] = {SPACE4_DIM1, SPACE4_DIM2, SPACE4_DIM3};
|
||
hsize_t dims3[] = {SPACE3_DIM1, SPACE3_DIM2};
|
||
hssize_t start[SPACE1_RANK]; /* Starting location of hyperslab */
|
||
hsize_t stride[SPACE1_RANK]; /* Stride of hyperslab */
|
||
hsize_t count[SPACE1_RANK]; /* Element count of hyperslab */
|
||
hsize_t block[SPACE1_RANK]; /* Block size of hyperslab */
|
||
struct row_list {
|
||
size_t z;
|
||
size_t y;
|
||
size_t x;
|
||
size_t l;
|
||
} rows[]= { /* Array of x,y,z coordinates & length for each row written from memory */
|
||
{0,0,0,6}, /* 1st face of 3-D object */
|
||
{0,1,0,6},
|
||
{0,2,0,6},
|
||
{0,3,0,6},
|
||
{0,4,0,6},
|
||
{1,0,0,6}, /* 2nd face of 3-D object */
|
||
{1,1,0,6},
|
||
{1,2,0,6},
|
||
{1,3,0,6},
|
||
{1,4,0,6},
|
||
{2,0,0,6}, /* 3rd face of 3-D object */
|
||
{2,1,0,10},
|
||
{2,2,0,10},
|
||
{2,3,0,10},
|
||
{2,4,0,10},
|
||
{2,5,2,8},
|
||
{2,6,2,8},
|
||
{3,0,0,6}, /* 4th face of 3-D object */
|
||
{3,1,0,10},
|
||
{3,2,0,10},
|
||
{3,3,0,10},
|
||
{3,4,0,10},
|
||
{3,5,2,8},
|
||
{3,6,2,8},
|
||
{4,0,0,6}, /* 5th face of 3-D object */
|
||
{4,1,0,10},
|
||
{4,2,0,10},
|
||
{4,3,0,10},
|
||
{4,4,0,10},
|
||
{4,5,2,8},
|
||
{4,6,2,8},
|
||
{5,1,2,8}, /* 6th face of 3-D object */
|
||
{5,2,2,8},
|
||
{5,3,2,8},
|
||
{5,4,2,8},
|
||
{5,5,2,8},
|
||
{5,6,2,8},
|
||
{6,1,2,8}, /* 7th face of 3-D object */
|
||
{6,2,2,8},
|
||
{6,3,2,8},
|
||
{6,4,2,8},
|
||
{6,5,2,8},
|
||
{6,6,2,8},
|
||
{7,1,2,8}, /* 8th face of 3-D object */
|
||
{7,2,2,8},
|
||
{7,3,2,8},
|
||
{7,4,2,8},
|
||
{7,5,2,8},
|
||
{7,6,2,8}};
|
||
uint8_t *wbuf, /* buffer to write to disk */
|
||
*rbuf, /* buffer read from disk */
|
||
*tbuf, /* temporary buffer pointer */
|
||
*tbuf2; /* temporary buffer pointer */
|
||
int i,j,k; /* Counters */
|
||
herr_t ret; /* Generic return value */
|
||
hsize_t npoints; /* Number of elements in selection */
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing Hyperslab Selection Functions with unions of 3-D hyperslabs\n"));
|
||
|
||
/* Allocate write & read buffers */
|
||
wbuf=malloc(sizeof(uint8_t)*SPACE4_DIM1*SPACE4_DIM2*SPACE4_DIM3);
|
||
rbuf=calloc(sizeof(uint8_t),SPACE3_DIM1*SPACE3_DIM2);
|
||
|
||
/* Initialize write buffer */
|
||
for(i=0, tbuf=wbuf; i<SPACE4_DIM1; i++)
|
||
for(j=0; j<SPACE4_DIM2; j++)
|
||
for(k=0; k<SPACE4_DIM3; k++)
|
||
*tbuf++=(uint8_t)((((i*SPACE4_DIM2)+j)*SPACE4_DIM3)+k);
|
||
|
||
/* Create file */
|
||
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||
CHECK(fid1, FAIL, "H5Fcreate");
|
||
|
||
/* Test case of two blocks which overlap corners and must be split */
|
||
/* Create dataspace for dataset on disk */
|
||
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Create dataspace for writing buffer */
|
||
sid2 = H5Screate_simple(SPACE4_RANK, dims2, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 2x15x13 hyperslab for disk dataset */
|
||
start[0]=1; start[1]=0; start[2]=0;
|
||
stride[0]=1; stride[1]=1; stride[2]=1;
|
||
count[0]=2; count[1]=15; count[2]=13;
|
||
block[0]=1; block[1]=1; block[2]=1;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Select 5x5x6 hyperslab for memory dataset */
|
||
start[0]=0; start[1]=0; start[2]=0;
|
||
stride[0]=1; stride[1]=1; stride[2]=1;
|
||
count[0]=5; count[1]=5; count[2]=6;
|
||
block[0]=1; block[1]=1; block[2]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Union overlapping 15x20 hyperslab for memory dataset (forming a irregularly shaped region) */
|
||
start[0]=2; start[1]=1; start[2]=2;
|
||
stride[0]=1; stride[1]=1; stride[2]=1;
|
||
count[0]=6; count[1]=6; count[2]=8;
|
||
block[0]=1; block[1]=1; block[2]=1;
|
||
tmp_space = H5Scombine_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(tmp_space, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Combine dataspaces and create new dataspace */
|
||
tmp2_space = H5Scombine_select(sid2,H5S_SELECT_OR,tmp_space);
|
||
CHECK(tmp2_space, FAIL, "H5Scombin_select");
|
||
|
||
npoints = H5Sget_select_npoints(tmp2_space);
|
||
VERIFY(npoints, 15*26, "H5Sget_select_npoints");
|
||
|
||
/* Create a dataset */
|
||
dataset=H5Dcreate(fid1,"Dataset1",H5T_NATIVE_UCHAR,sid1,H5P_DEFAULT);
|
||
|
||
/* Write selection to disk */
|
||
ret=H5Dwrite(dataset,H5T_NATIVE_UCHAR,tmp2_space,sid1,H5P_DEFAULT,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Close temporary dataspaces */
|
||
ret = H5Sclose(tmp_space);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
ret = H5Sclose(tmp2_space);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Create dataspace for reading buffer */
|
||
sid2 = H5Screate_simple(SPACE3_RANK, dims3, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 15x26 hyperslab for reading memory dataset */
|
||
start[0]=0; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=15; count[1]=26;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Read selection from disk */
|
||
ret=H5Dread(dataset,H5T_NATIVE_UCHAR,sid2,sid1,H5P_DEFAULT,rbuf);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
|
||
/* Compare data read with data written out */
|
||
for(i=0,tbuf2=rbuf; i<(int)(sizeof(rows)/sizeof(struct row_list)); i++) {
|
||
tbuf=wbuf+(rows[i].z*SPACE4_DIM3*SPACE4_DIM2)+(rows[i].y*SPACE4_DIM3)+rows[i].x;
|
||
for(j=0; j<(int)rows[i].l; j++, tbuf++, tbuf2++) {
|
||
if(*tbuf!=*tbuf2) {
|
||
printf("%d: hyperslab values don't match!, i=%d, j=%d, *tbuf=%d, *tbuf2=%d\n",__LINE__,i,j,(int)*tbuf,(int)*tbuf2);
|
||
num_errs++;
|
||
} /* end if */
|
||
} /* end for */
|
||
} /* end for */
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close disk dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(dataset);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Close file */
|
||
ret = H5Fclose(fid1);
|
||
CHECK(ret, FAIL, "H5Fclose");
|
||
|
||
/* Free memory buffers */
|
||
free(wbuf);
|
||
free(rbuf);
|
||
} /* test_select_hyper_union_3d() */
|
||
#endif /* NEW_HYPERSLAB_API */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_hyper_and_2d(): Test basic H5S (dataspace) selection code.
|
||
** Tests 'and' of hyperslabs in 2-D
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_hyper_and_2d(void)
|
||
{
|
||
hid_t fid1; /* HDF5 File IDs */
|
||
hid_t dataset; /* Dataset ID */
|
||
hid_t sid1,sid2; /* Dataspace ID */
|
||
hsize_t dims1[] = {SPACE2_DIM1, SPACE2_DIM2};
|
||
hsize_t dims2[] = {SPACE2A_DIM1};
|
||
hssize_t start[SPACE2_RANK]; /* Starting location of hyperslab */
|
||
hsize_t stride[SPACE2_RANK]; /* Stride of hyperslab */
|
||
hsize_t count[SPACE2_RANK]; /* Element count of hyperslab */
|
||
hsize_t block[SPACE2_RANK]; /* Block size of hyperslab */
|
||
uint8_t *wbuf, /* buffer to write to disk */
|
||
*rbuf, /* buffer read from disk */
|
||
*tbuf, /* temporary buffer pointer */
|
||
*tbuf2; /* temporary buffer pointer */
|
||
int i,j; /* Counters */
|
||
herr_t ret; /* Generic return value */
|
||
hsize_t npoints; /* Number of elements in selection */
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing Hyperslab Selection Functions with intersection of 2-D hyperslabs\n"));
|
||
|
||
/* Allocate write & read buffers */
|
||
wbuf=malloc(sizeof(uint8_t)*SPACE2_DIM1*SPACE2_DIM2);
|
||
rbuf=calloc(sizeof(uint8_t),SPACE2_DIM1*SPACE2_DIM2);
|
||
|
||
/* Initialize write buffer */
|
||
for(i=0, tbuf=wbuf; i<SPACE2_DIM1; i++)
|
||
for(j=0; j<SPACE2_DIM2; j++)
|
||
*tbuf++=(uint8_t)((i*SPACE2_DIM2)+j);
|
||
|
||
/* Create file */
|
||
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||
CHECK(fid1, FAIL, "H5Fcreate");
|
||
|
||
/* Create dataspace for dataset on disk */
|
||
sid1 = H5Screate_simple(SPACE2_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Create dataspace for writing buffer */
|
||
sid2 = H5Screate_simple(SPACE2A_RANK, dims2, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 10x10 hyperslab for disk dataset */
|
||
start[0]=0; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=10; count[1]=10;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Intersect overlapping 10x10 hyperslab */
|
||
start[0]=5; start[1]=5;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=10; count[1]=10;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_AND,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
npoints = H5Sget_select_npoints(sid1);
|
||
VERIFY(npoints, 5*5, "H5Sget_select_npoints");
|
||
|
||
/* Select 25 hyperslab for memory dataset */
|
||
start[0]=0;
|
||
stride[0]=1;
|
||
count[0]=25;
|
||
block[0]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
npoints = H5Sget_select_npoints(sid2);
|
||
VERIFY(npoints, 5*5, "H5Sget_select_npoints");
|
||
|
||
/* Create a dataset */
|
||
dataset=H5Dcreate(fid1,"Dataset1",H5T_NATIVE_UCHAR,sid1,H5P_DEFAULT);
|
||
|
||
/* Write selection to disk */
|
||
ret=H5Dwrite(dataset,H5T_NATIVE_UCHAR,sid2,sid1,H5P_DEFAULT,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Read entire dataset from disk */
|
||
ret=H5Dread(dataset,H5T_NATIVE_UCHAR,H5S_ALL,H5S_ALL,H5P_DEFAULT,rbuf);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
|
||
/* Initialize write buffer */
|
||
for(i=0, tbuf=rbuf, tbuf2=wbuf; i<SPACE2_DIM1; i++)
|
||
for(j=0; j<SPACE2_DIM2; j++, tbuf++) {
|
||
if((i>=5 && i<=9) && (j>=5 && j<=9)) {
|
||
if(*tbuf!=*tbuf2)
|
||
printf("%d: hyperslab values don't match!, i=%d, j=%d, *tbuf=%d, *tbuf2=%d\n",__LINE__,i,j,(int)*tbuf,(int)*tbuf2);
|
||
tbuf2++;
|
||
} /* end if */
|
||
else {
|
||
if(*tbuf!=0)
|
||
printf("%d: hyperslab element has wrong value!, i=%d, j=%d, *tbuf=%d\n",__LINE__,i,j,(int)*tbuf);
|
||
} /* end else */
|
||
} /* end for */
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close disk dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(dataset);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Close file */
|
||
ret = H5Fclose(fid1);
|
||
CHECK(ret, FAIL, "H5Fclose");
|
||
|
||
/* Free memory buffers */
|
||
free(wbuf);
|
||
free(rbuf);
|
||
} /* test_select_hyper_and_2d() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_hyper_xor_2d(): Test basic H5S (dataspace) selection code.
|
||
** Tests 'xor' of hyperslabs in 2-D
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_hyper_xor_2d(void)
|
||
{
|
||
hid_t fid1; /* HDF5 File IDs */
|
||
hid_t dataset; /* Dataset ID */
|
||
hid_t sid1,sid2; /* Dataspace ID */
|
||
hsize_t dims1[] = {SPACE2_DIM1, SPACE2_DIM2};
|
||
hsize_t dims2[] = {SPACE2A_DIM1};
|
||
hssize_t start[SPACE2_RANK]; /* Starting location of hyperslab */
|
||
hsize_t stride[SPACE2_RANK]; /* Stride of hyperslab */
|
||
hsize_t count[SPACE2_RANK]; /* Element count of hyperslab */
|
||
hsize_t block[SPACE2_RANK]; /* Block size of hyperslab */
|
||
uint8_t *wbuf, /* buffer to write to disk */
|
||
*rbuf, /* buffer read from disk */
|
||
*tbuf, /* temporary buffer pointer */
|
||
*tbuf2; /* temporary buffer pointer */
|
||
int i,j; /* Counters */
|
||
herr_t ret; /* Generic return value */
|
||
hsize_t npoints; /* Number of elements in selection */
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing Hyperslab Selection Functions with XOR of 2-D hyperslabs\n"));
|
||
|
||
/* Allocate write & read buffers */
|
||
wbuf=malloc(sizeof(uint8_t)*SPACE2_DIM1*SPACE2_DIM2);
|
||
rbuf=calloc(sizeof(uint8_t),SPACE2_DIM1*SPACE2_DIM2);
|
||
|
||
/* Initialize write buffer */
|
||
for(i=0, tbuf=wbuf; i<SPACE2_DIM1; i++)
|
||
for(j=0; j<SPACE2_DIM2; j++)
|
||
*tbuf++=(uint8_t)((i*SPACE2_DIM2)+j);
|
||
|
||
/* Create file */
|
||
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||
CHECK(fid1, FAIL, "H5Fcreate");
|
||
|
||
/* Create dataspace for dataset on disk */
|
||
sid1 = H5Screate_simple(SPACE2_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Create dataspace for writing buffer */
|
||
sid2 = H5Screate_simple(SPACE2A_RANK, dims2, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 10x10 hyperslab for disk dataset */
|
||
start[0]=0; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=10; count[1]=10;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Intersect overlapping 10x10 hyperslab */
|
||
start[0]=5; start[1]=5;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=10; count[1]=10;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_XOR,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
npoints = H5Sget_select_npoints(sid1);
|
||
VERIFY(npoints, 150, "H5Sget_select_npoints");
|
||
|
||
/* Select 25 hyperslab for memory dataset */
|
||
start[0]=0;
|
||
stride[0]=1;
|
||
count[0]=150;
|
||
block[0]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
npoints = H5Sget_select_npoints(sid2);
|
||
VERIFY(npoints, 150, "H5Sget_select_npoints");
|
||
|
||
/* Create a dataset */
|
||
dataset=H5Dcreate(fid1,"Dataset1",H5T_NATIVE_UCHAR,sid1,H5P_DEFAULT);
|
||
|
||
/* Write selection to disk */
|
||
ret=H5Dwrite(dataset,H5T_NATIVE_UCHAR,sid2,sid1,H5P_DEFAULT,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Read entire dataset from disk */
|
||
ret=H5Dread(dataset,H5T_NATIVE_UCHAR,H5S_ALL,H5S_ALL,H5P_DEFAULT,rbuf);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
|
||
/* Initialize write buffer */
|
||
for(i=0, tbuf=rbuf, tbuf2=wbuf; i<SPACE2_DIM1; i++)
|
||
for(j=0; j<SPACE2_DIM2; j++, tbuf++) {
|
||
if(((i>=0 && i<=4) && (j>=0 && j<=9)) ||
|
||
((i>=5 && i<=9) && ((j>=0 && j<=4) || (j>=10 && j<=14))) ||
|
||
((i>=10 && i<=14) && (j>=5 && j<=14))) {
|
||
if(*tbuf!=*tbuf2)
|
||
printf("%d: hyperslab values don't match!, i=%d, j=%d, *tbuf=%d, *tbuf2=%d\n",__LINE__,i,j,(int)*tbuf,(int)*tbuf2);
|
||
tbuf2++;
|
||
} /* end if */
|
||
else {
|
||
if(*tbuf!=0)
|
||
printf("%d: hyperslab element has wrong value!, i=%d, j=%d, *tbuf=%d\n",__LINE__,i,j,(int)*tbuf);
|
||
} /* end else */
|
||
} /* end for */
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close disk dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(dataset);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Close file */
|
||
ret = H5Fclose(fid1);
|
||
CHECK(ret, FAIL, "H5Fclose");
|
||
|
||
/* Free memory buffers */
|
||
free(wbuf);
|
||
free(rbuf);
|
||
} /* test_select_hyper_xor_2d() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_hyper_notb_2d(): Test basic H5S (dataspace) selection code.
|
||
** Tests 'notb' of hyperslabs in 2-D
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_hyper_notb_2d(void)
|
||
{
|
||
hid_t fid1; /* HDF5 File IDs */
|
||
hid_t dataset; /* Dataset ID */
|
||
hid_t sid1,sid2; /* Dataspace ID */
|
||
hsize_t dims1[] = {SPACE2_DIM1, SPACE2_DIM2};
|
||
hsize_t dims2[] = {SPACE2A_DIM1};
|
||
hssize_t start[SPACE2_RANK]; /* Starting location of hyperslab */
|
||
hsize_t stride[SPACE2_RANK]; /* Stride of hyperslab */
|
||
hsize_t count[SPACE2_RANK]; /* Element count of hyperslab */
|
||
hsize_t block[SPACE2_RANK]; /* Block size of hyperslab */
|
||
uint8_t *wbuf, /* buffer to write to disk */
|
||
*rbuf, /* buffer read from disk */
|
||
*tbuf, /* temporary buffer pointer */
|
||
*tbuf2; /* temporary buffer pointer */
|
||
int i,j; /* Counters */
|
||
herr_t ret; /* Generic return value */
|
||
hsize_t npoints; /* Number of elements in selection */
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing Hyperslab Selection Functions with NOTB of 2-D hyperslabs\n"));
|
||
|
||
/* Allocate write & read buffers */
|
||
wbuf=malloc(sizeof(uint8_t)*SPACE2_DIM1*SPACE2_DIM2);
|
||
rbuf=calloc(sizeof(uint8_t),SPACE2_DIM1*SPACE2_DIM2);
|
||
|
||
/* Initialize write buffer */
|
||
for(i=0, tbuf=wbuf; i<SPACE2_DIM1; i++)
|
||
for(j=0; j<SPACE2_DIM2; j++)
|
||
*tbuf++=(uint8_t)((i*SPACE2_DIM2)+j);
|
||
|
||
/* Create file */
|
||
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||
CHECK(fid1, FAIL, "H5Fcreate");
|
||
|
||
/* Create dataspace for dataset on disk */
|
||
sid1 = H5Screate_simple(SPACE2_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Create dataspace for writing buffer */
|
||
sid2 = H5Screate_simple(SPACE2A_RANK, dims2, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 10x10 hyperslab for disk dataset */
|
||
start[0]=0; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=10; count[1]=10;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Intersect overlapping 10x10 hyperslab */
|
||
start[0]=5; start[1]=5;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=10; count[1]=10;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_NOTB,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
npoints = H5Sget_select_npoints(sid1);
|
||
VERIFY(npoints, 75, "H5Sget_select_npoints");
|
||
|
||
/* Select 75 hyperslab for memory dataset */
|
||
start[0]=0;
|
||
stride[0]=1;
|
||
count[0]=75;
|
||
block[0]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
npoints = H5Sget_select_npoints(sid2);
|
||
VERIFY(npoints, 75, "H5Sget_select_npoints");
|
||
|
||
/* Create a dataset */
|
||
dataset=H5Dcreate(fid1,"Dataset1",H5T_NATIVE_UCHAR,sid1,H5P_DEFAULT);
|
||
|
||
/* Write selection to disk */
|
||
ret=H5Dwrite(dataset,H5T_NATIVE_UCHAR,sid2,sid1,H5P_DEFAULT,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Read entire dataset from disk */
|
||
ret=H5Dread(dataset,H5T_NATIVE_UCHAR,H5S_ALL,H5S_ALL,H5P_DEFAULT,rbuf);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
|
||
/* Initialize write buffer */
|
||
for(i=0, tbuf=rbuf, tbuf2=wbuf; i<SPACE2_DIM1; i++)
|
||
for(j=0; j<SPACE2_DIM2; j++, tbuf++) {
|
||
if(((i>=0 && i<=4) && (j>=0 && j<=9)) ||
|
||
((i>=5 && i<=9) && (j>=0 && j<=4))) {
|
||
if(*tbuf!=*tbuf2)
|
||
printf("%d: hyperslab values don't match!, i=%d, j=%d, *tbuf=%d, *tbuf2=%d\n",__LINE__,i,j,(int)*tbuf,(int)*tbuf2);
|
||
tbuf2++;
|
||
} /* end if */
|
||
else {
|
||
if(*tbuf!=0)
|
||
printf("%d: hyperslab element has wrong value!, i=%d, j=%d, *tbuf=%d\n",__LINE__,i,j,(int)*tbuf);
|
||
} /* end else */
|
||
} /* end for */
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close disk dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(dataset);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Close file */
|
||
ret = H5Fclose(fid1);
|
||
CHECK(ret, FAIL, "H5Fclose");
|
||
|
||
/* Free memory buffers */
|
||
free(wbuf);
|
||
free(rbuf);
|
||
} /* test_select_hyper_notb_2d() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_hyper_nota_2d(): Test basic H5S (dataspace) selection code.
|
||
** Tests 'nota' of hyperslabs in 2-D
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_hyper_nota_2d(void)
|
||
{
|
||
hid_t fid1; /* HDF5 File IDs */
|
||
hid_t dataset; /* Dataset ID */
|
||
hid_t sid1,sid2; /* Dataspace ID */
|
||
hsize_t dims1[] = {SPACE2_DIM1, SPACE2_DIM2};
|
||
hsize_t dims2[] = {SPACE2A_DIM1};
|
||
hssize_t start[SPACE2_RANK]; /* Starting location of hyperslab */
|
||
hsize_t stride[SPACE2_RANK]; /* Stride of hyperslab */
|
||
hsize_t count[SPACE2_RANK]; /* Element count of hyperslab */
|
||
hsize_t block[SPACE2_RANK]; /* Block size of hyperslab */
|
||
uint8_t *wbuf, /* buffer to write to disk */
|
||
*rbuf, /* buffer read from disk */
|
||
*tbuf, /* temporary buffer pointer */
|
||
*tbuf2; /* temporary buffer pointer */
|
||
int i,j; /* Counters */
|
||
herr_t ret; /* Generic return value */
|
||
hsize_t npoints; /* Number of elements in selection */
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing Hyperslab Selection Functions with NOTA of 2-D hyperslabs\n"));
|
||
|
||
/* Allocate write & read buffers */
|
||
wbuf=malloc(sizeof(uint8_t)*SPACE2_DIM1*SPACE2_DIM2);
|
||
rbuf=calloc(sizeof(uint8_t),SPACE2_DIM1*SPACE2_DIM2);
|
||
|
||
/* Initialize write buffer */
|
||
for(i=0, tbuf=wbuf; i<SPACE2_DIM1; i++)
|
||
for(j=0; j<SPACE2_DIM2; j++)
|
||
*tbuf++=(uint8_t)((i*SPACE2_DIM2)+j);
|
||
|
||
/* Create file */
|
||
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||
CHECK(fid1, FAIL, "H5Fcreate");
|
||
|
||
/* Create dataspace for dataset on disk */
|
||
sid1 = H5Screate_simple(SPACE2_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Create dataspace for writing buffer */
|
||
sid2 = H5Screate_simple(SPACE2A_RANK, dims2, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Select 10x10 hyperslab for disk dataset */
|
||
start[0]=0; start[1]=0;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=10; count[1]=10;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Intersect overlapping 10x10 hyperslab */
|
||
start[0]=5; start[1]=5;
|
||
stride[0]=1; stride[1]=1;
|
||
count[0]=10; count[1]=10;
|
||
block[0]=1; block[1]=1;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_NOTA,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
npoints = H5Sget_select_npoints(sid1);
|
||
VERIFY(npoints, 75, "H5Sget_select_npoints");
|
||
|
||
/* Select 75 hyperslab for memory dataset */
|
||
start[0]=0;
|
||
stride[0]=1;
|
||
count[0]=75;
|
||
block[0]=1;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
npoints = H5Sget_select_npoints(sid2);
|
||
VERIFY(npoints, 75, "H5Sget_select_npoints");
|
||
|
||
/* Create a dataset */
|
||
dataset=H5Dcreate(fid1,"Dataset1",H5T_NATIVE_UCHAR,sid1,H5P_DEFAULT);
|
||
|
||
/* Write selection to disk */
|
||
ret=H5Dwrite(dataset,H5T_NATIVE_UCHAR,sid2,sid1,H5P_DEFAULT,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Read entire dataset from disk */
|
||
ret=H5Dread(dataset,H5T_NATIVE_UCHAR,H5S_ALL,H5S_ALL,H5P_DEFAULT,rbuf);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
|
||
/* Initialize write buffer */
|
||
for(i=0, tbuf=rbuf, tbuf2=wbuf; i<SPACE2_DIM1; i++)
|
||
for(j=0; j<SPACE2_DIM2; j++, tbuf++) {
|
||
if(((i>=10 && i<=14) && (j>=5 && j<=14)) ||
|
||
((i>=5 && i<=9) && (j>=10 && j<=14))) {
|
||
if(*tbuf!=*tbuf2)
|
||
printf("%d: hyperslab values don't match!, i=%d, j=%d, *tbuf=%d, *tbuf2=%d\n",__LINE__,i,j,(int)*tbuf,(int)*tbuf2);
|
||
tbuf2++;
|
||
} /* end if */
|
||
else {
|
||
if(*tbuf!=0)
|
||
printf("%d: hyperslab element has wrong value!, i=%d, j=%d, *tbuf=%d\n",__LINE__,i,j,(int)*tbuf);
|
||
} /* end else */
|
||
} /* end for */
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close disk dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(dataset);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Close file */
|
||
ret = H5Fclose(fid1);
|
||
CHECK(ret, FAIL, "H5Fclose");
|
||
|
||
/* Free memory buffers */
|
||
free(wbuf);
|
||
free(rbuf);
|
||
} /* test_select_hyper_nota_2d() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_hyper_iter2(): Iterator for checking hyperslab iteration
|
||
**
|
||
****************************************************************/
|
||
herr_t
|
||
test_select_hyper_iter2(void *_elem, hid_t UNUSED type_id, hsize_t ndim, hssize_t *point, void *_operator_data)
|
||
{
|
||
int *tbuf=(int *)_elem, /* temporary buffer pointer */
|
||
**tbuf2=(int **)_operator_data; /* temporary buffer handle */
|
||
unsigned u; /* Local counting variable */
|
||
|
||
if(*tbuf!=**tbuf2) {
|
||
num_errs++;
|
||
printf("Error in hyperslab iteration!\n");
|
||
printf("location: { ");
|
||
for(u=0; u<(unsigned)ndim; u++) {
|
||
printf("%2d",(int)point[u]);
|
||
if(u<(unsigned)(ndim-1))
|
||
printf(", ");
|
||
} /* end for */
|
||
printf("}\n");
|
||
printf("*tbuf=%d, **tbuf2=%d\n",*tbuf,**tbuf2);
|
||
return(-1);
|
||
} /* end if */
|
||
else {
|
||
(*tbuf2)++;
|
||
return(0);
|
||
}
|
||
} /* end test_select_hyper_iter1() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_hyper_union_random_5d(): Test basic H5S (dataspace) selection code.
|
||
** Tests random unions of 5-D hyperslabs
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_hyper_union_random_5d(hid_t read_plist)
|
||
{
|
||
hid_t fid1; /* HDF5 File IDs */
|
||
hid_t dataset; /* Dataset ID */
|
||
hid_t sid1,sid2; /* Dataspace ID */
|
||
hsize_t dims1[] = {SPACE5_DIM1, SPACE5_DIM2, SPACE5_DIM3, SPACE5_DIM4, SPACE5_DIM5};
|
||
hsize_t dims2[] = {SPACE6_DIM1};
|
||
hssize_t start[SPACE5_RANK]; /* Starting location of hyperslab */
|
||
hsize_t count[SPACE5_RANK]; /* Element count of hyperslab */
|
||
int *wbuf, /* buffer to write to disk */
|
||
*rbuf, /* buffer read from disk */
|
||
*tbuf; /* temporary buffer pointer */
|
||
int i,j,k,l,m; /* Counters */
|
||
herr_t ret; /* Generic return value */
|
||
hssize_t npoints, /* Number of elements in file selection */
|
||
npoints2; /* Number of elements in memory selection */
|
||
unsigned seed; /* Random number seed for each test */
|
||
unsigned test_num; /* Count of tests being executed */
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing Hyperslab Selection Functions with random unions of 5-D hyperslabs\n"));
|
||
|
||
/* Allocate write & read buffers */
|
||
wbuf=malloc(sizeof(int)*SPACE5_DIM1*SPACE5_DIM2*SPACE5_DIM3*SPACE5_DIM4*SPACE5_DIM5);
|
||
rbuf=calloc(sizeof(int),SPACE5_DIM1*SPACE5_DIM2*SPACE5_DIM3*SPACE5_DIM4*SPACE5_DIM5);
|
||
|
||
/* Initialize write buffer */
|
||
for(i=0, tbuf=wbuf; i<SPACE5_DIM1; i++)
|
||
for(j=0; j<SPACE5_DIM2; j++)
|
||
for(k=0; k<SPACE5_DIM3; k++)
|
||
for(l=0; l<SPACE5_DIM4; l++)
|
||
for(m=0; m<SPACE5_DIM5; m++)
|
||
*tbuf++=(int)(((((((i*SPACE5_DIM2)+j)*SPACE5_DIM3)+k)*SPACE5_DIM4)+l)*SPACE5_DIM5)+m;
|
||
|
||
/* Create file */
|
||
fid1 = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
|
||
CHECK(fid1, FAIL, "H5Fcreate");
|
||
|
||
/* Create dataspace for dataset on disk */
|
||
sid1 = H5Screate_simple(SPACE5_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Create a dataset */
|
||
dataset=H5Dcreate(fid1,"Dataset1",H5T_NATIVE_INT,sid1,H5P_DEFAULT);
|
||
CHECK(dataset, FAIL, "H5Dcreate");
|
||
|
||
/* Write entire dataset to disk */
|
||
ret=H5Dwrite(dataset,H5T_NATIVE_INT,H5S_ALL,H5S_ALL,H5P_DEFAULT,wbuf);
|
||
CHECK(ret, FAIL, "H5Dwrite");
|
||
|
||
/* Create dataspace for reading buffer */
|
||
sid2 = H5Screate_simple(SPACE6_RANK, dims2, NULL);
|
||
CHECK(sid2, FAIL, "H5Screate_simple");
|
||
|
||
/* Get initial random # seed */
|
||
seed=(unsigned)time(NULL)+(unsigned)clock();
|
||
|
||
/* Crunch through a bunch of random hyperslab reads from the file dataset */
|
||
for(test_num=0; test_num<NRAND_HYPER; test_num++) {
|
||
/* Save random # seed for later use */
|
||
/* (Used in case of errors, to regenerate the hyperslab sequence) */
|
||
#ifndef QAK
|
||
seed+=(unsigned)clock();
|
||
#else /* QAK */
|
||
seed=987909620;
|
||
#endif /* QAK */
|
||
srand(seed);
|
||
|
||
#ifdef QAK
|
||
printf("test_num=%d, seed=%u\n",test_num,seed);
|
||
#endif /* QAK */
|
||
#ifndef QAK
|
||
for(i=0; i<NHYPERSLABS; i++) {
|
||
#else /* QAK */
|
||
for(i=0; i<2; i++) {
|
||
#endif /* QAK */
|
||
#ifdef QAK
|
||
printf("hyperslab=%d\n",i);
|
||
#endif /* QAK */
|
||
/* Select random hyperslab location & size for selection */
|
||
for(j=0; j<SPACE5_RANK; j++) {
|
||
start[j]=rand()%dims1[j];
|
||
count[j]=(rand()%(dims1[j]-start[j]))+1;
|
||
#ifdef QAK
|
||
printf("start[%d]=%d, count[%d]=%d (end[%d]=%d)\n",j,(int)start[j],j,(int)count[j],j,(int)(start[j]+count[j]-1));
|
||
#endif /* QAK */
|
||
} /* end for */
|
||
|
||
/* Select hyperslab */
|
||
ret = H5Sselect_hyperslab(sid1,(i==0 ? H5S_SELECT_SET : H5S_SELECT_OR),start,NULL,count,NULL);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
} /* end for */
|
||
|
||
/* Get the number of elements selected */
|
||
npoints=H5Sget_select_npoints(sid1);
|
||
CHECK(npoints, 0, "H5Sget_select_npoints");
|
||
|
||
/* Select linear 1-D hyperslab for memory dataset */
|
||
start[0]=0;
|
||
count[0]=npoints;
|
||
ret = H5Sselect_hyperslab(sid2,H5S_SELECT_SET,start,NULL,count,NULL);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
npoints2 = H5Sget_select_npoints(sid2);
|
||
VERIFY(npoints, npoints2, "H5Sget_select_npoints");
|
||
|
||
#ifdef QAK
|
||
printf("random I/O, before H5Dread(), npoints=%lu\n",(unsigned long)npoints);
|
||
{
|
||
hsize_t blocks[128][2][SPACE5_RANK];
|
||
hssize_t nblocks;
|
||
int k;
|
||
|
||
nblocks=H5Sget_select_hyper_nblocks(sid1);
|
||
printf("nblocks=%d\n",(int)nblocks);
|
||
H5Sget_select_hyper_blocklist(sid1,0,nblocks,blocks);
|
||
for(j=0; j<nblocks; j++) {
|
||
printf("Block #%d, start = {",j);
|
||
for(k=0; k<SPACE5_RANK; k++) {
|
||
printf("%d",blocks[j][0][k]);
|
||
if(k<(SPACE5_RANK-1))
|
||
printf(", ");
|
||
else
|
||
printf("}, end = {");
|
||
} /* end for */
|
||
for(k=0; k<SPACE5_RANK; k++) {
|
||
printf("%d",blocks[j][1][k]);
|
||
if(k<(SPACE5_RANK-1))
|
||
printf(", ");
|
||
else
|
||
printf("}\n");
|
||
} /* end for */
|
||
} /* end for */
|
||
}
|
||
#endif /* QAK */
|
||
/* Read selection from disk */
|
||
ret=H5Dread(dataset,H5T_NATIVE_INT,sid2,sid1,read_plist,rbuf);
|
||
CHECK(ret, FAIL, "H5Dread");
|
||
#ifdef QAK
|
||
printf("random I/O, after H5Dread()\n");
|
||
#endif /* QAK */
|
||
|
||
/* Compare data read with data written out */
|
||
tbuf=rbuf;
|
||
ret = H5Diterate(wbuf,H5T_NATIVE_INT,sid1,test_select_hyper_iter2,&tbuf);
|
||
if(ret<0) {
|
||
num_errs++;
|
||
printf("Random hyperslabs for seed %u failed!\n",seed);
|
||
break;
|
||
}
|
||
|
||
/* Set the read buffer back to all zeroes */
|
||
memset(rbuf,0,SPACE6_DIM1);
|
||
} /* end for */
|
||
|
||
/* Close memory dataspace */
|
||
ret = H5Sclose(sid2);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close disk dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Close Dataset */
|
||
ret = H5Dclose(dataset);
|
||
CHECK(ret, FAIL, "H5Dclose");
|
||
|
||
/* Close file */
|
||
ret = H5Fclose(fid1);
|
||
CHECK(ret, FAIL, "H5Fclose");
|
||
|
||
/* Free memory buffers */
|
||
free(wbuf);
|
||
free(rbuf);
|
||
} /* test_select_hyper_union_random_5d() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_hyper_chunk(): Test basic H5S (dataspace) selection code.
|
||
** Tests large hyperslab selection in chunked dataset
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_hyper_chunk(hid_t fapl_plist, hid_t xfer_plist)
|
||
{
|
||
hsize_t dimsf[3]; /* dataset dimensions */
|
||
hsize_t chunk_dimsf[3] = {CHUNK_X, CHUNK_Y, CHUNK_Z}; /* chunk sizes */
|
||
short *data; /* data to write */
|
||
short *tmpdata; /* data to write */
|
||
|
||
/*
|
||
* Data and output buffer initialization.
|
||
*/
|
||
hid_t file, dataset; /* handles */
|
||
hid_t dataspace;
|
||
hid_t memspace;
|
||
hid_t plist;
|
||
hsize_t dimsm[3]; /* memory space dimensions */
|
||
hsize_t dims_out[3]; /* dataset dimensions */
|
||
herr_t status;
|
||
|
||
short *data_out; /* output buffer */
|
||
short *tmpdata_out; /* output buffer */
|
||
|
||
hsize_t count[3]; /* size of the hyperslab in the file */
|
||
hssize_t offset[3]; /* hyperslab offset in the file */
|
||
hsize_t count_out[3]; /* size of the hyperslab in memory */
|
||
hssize_t offset_out[3]; /* hyperslab offset in memory */
|
||
int i, j, k, status_n, rank;
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing Hyperslab I/O on Large Chunks\n"));
|
||
|
||
/* Allocate the transfer buffers */
|
||
data = (short*)malloc(sizeof(short)*X*Y*Z);
|
||
data_out = (short*)calloc(NX*NY*NZ,sizeof(short));
|
||
|
||
/*
|
||
* Data buffer initialization.
|
||
*/
|
||
tmpdata = data;
|
||
for (j = 0; j < X; j++)
|
||
for (i = 0; i < Y; i++)
|
||
for (k = 0; k < Z; k++)
|
||
*tmpdata++ = (short)((k+1)%256);
|
||
|
||
/*
|
||
* Create a new file using H5F_ACC_TRUNC access,
|
||
* the default file creation properties, and the default file
|
||
* access properties.
|
||
*/
|
||
file = H5Fcreate (FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, fapl_plist);
|
||
CHECK(file, FAIL, "H5Fcreate");
|
||
|
||
/*
|
||
* Describe the size of the array and create the data space for fixed
|
||
* size dataset.
|
||
*/
|
||
dimsf[0] = X;
|
||
dimsf[1] = Y;
|
||
dimsf[2] = Z;
|
||
dataspace = H5Screate_simple (RANK_F, dimsf, NULL);
|
||
CHECK(dataspace, FAIL, "H5Screate_simple");
|
||
|
||
/*
|
||
* Create a new dataset within the file using defined dataspace and
|
||
* chunking properties.
|
||
*/
|
||
plist = H5Pcreate (H5P_DATASET_CREATE);
|
||
CHECK(plist, FAIL, "H5Pcreate");
|
||
status = H5Pset_chunk (plist, RANK_F, chunk_dimsf);
|
||
CHECK(status, FAIL, "H5Pset_chunk");
|
||
dataset = H5Dcreate (file, DATASETNAME, H5T_NATIVE_UCHAR, dataspace, plist);
|
||
CHECK(dataset, FAIL, "H5Dcreate");
|
||
|
||
/*
|
||
* Define hyperslab in the dataset.
|
||
*/
|
||
offset[0] = 0;
|
||
offset[1] = 0;
|
||
offset[2] = 0;
|
||
count[0] = NX_SUB;
|
||
count[1] = NY_SUB;
|
||
count[2] = NZ_SUB;
|
||
status = H5Sselect_hyperslab (dataspace, H5S_SELECT_SET, offset, NULL,
|
||
count, NULL);
|
||
CHECK(status, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/*
|
||
* Define the memory dataspace.
|
||
*/
|
||
dimsm[0] = NX;
|
||
dimsm[1] = NY;
|
||
dimsm[2] = NZ;
|
||
memspace = H5Screate_simple (RANK_M, dimsm, NULL);
|
||
CHECK(memspace, FAIL, "H5Screate_simple");
|
||
|
||
/*
|
||
* Define memory hyperslab.
|
||
*/
|
||
offset_out[0] = 0;
|
||
offset_out[1] = 0;
|
||
offset_out[2] = 0;
|
||
count_out[0] = NX_SUB;
|
||
count_out[1] = NY_SUB;
|
||
count_out[2] = NZ_SUB;
|
||
status = H5Sselect_hyperslab (memspace, H5S_SELECT_SET, offset_out, NULL,
|
||
count_out, NULL);
|
||
CHECK(status, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/*
|
||
* Write the data to the dataset using hyperslabs
|
||
*/
|
||
status = H5Dwrite (dataset, H5T_NATIVE_SHORT, memspace, dataspace,
|
||
xfer_plist, data);
|
||
CHECK(status, FAIL, "H5Dwrite");
|
||
|
||
/*
|
||
* Close/release resources.
|
||
*/
|
||
status=H5Pclose (plist);
|
||
CHECK(status, FAIL, "H5Pclose");
|
||
status=H5Sclose (dataspace);
|
||
CHECK(status, FAIL, "H5Sclose");
|
||
status=H5Sclose (memspace);
|
||
CHECK(status, FAIL, "H5Sclose");
|
||
status=H5Dclose (dataset);
|
||
CHECK(status, FAIL, "H5Dclose");
|
||
status=H5Fclose (file);
|
||
CHECK(status, FAIL, "H5Fclose");
|
||
|
||
|
||
/*************************************************************
|
||
|
||
This reads the hyperslab from the test.h5 file just
|
||
created, into a 3-dimensional plane of the 3-dimensional
|
||
array.
|
||
|
||
************************************************************/
|
||
|
||
/*
|
||
* Open the file and the dataset.
|
||
*/
|
||
file = H5Fopen (FILENAME, H5F_ACC_RDONLY, fapl_plist);
|
||
CHECK(file, FAIL, "H5Fopen");
|
||
dataset = H5Dopen (file, DATASETNAME);
|
||
CHECK(dataset, FAIL, "H5Dopen");
|
||
|
||
dataspace = H5Dget_space (dataset); /* dataspace handle */
|
||
CHECK(dataspace, FAIL, "H5Dget_space");
|
||
rank = H5Sget_simple_extent_ndims (dataspace);
|
||
VERIFY(rank, 3, "H5Sget_simple_extent_ndims");
|
||
status_n = H5Sget_simple_extent_dims (dataspace, dims_out, NULL);
|
||
CHECK(status_n, FAIL, "H5Sget_simple_extent_dims");
|
||
VERIFY(dims_out[0], dimsf[0], "Dataset dimensions");
|
||
VERIFY(dims_out[1], dimsf[1], "Dataset dimensions");
|
||
VERIFY(dims_out[2], dimsf[2], "Dataset dimensions");
|
||
|
||
/*
|
||
* Define hyperslab in the dataset.
|
||
*/
|
||
offset[0] = 0;
|
||
offset[1] = 0;
|
||
offset[2] = 0;
|
||
count[0] = NX_SUB;
|
||
count[1] = NY_SUB;
|
||
count[2] = NZ_SUB;
|
||
status = H5Sselect_hyperslab (dataspace, H5S_SELECT_SET, offset, NULL,
|
||
count, NULL);
|
||
CHECK(status, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/*
|
||
* Define the memory dataspace.
|
||
*/
|
||
dimsm[0] = NX;
|
||
dimsm[1] = NY;
|
||
dimsm[2] = NZ;
|
||
memspace = H5Screate_simple (RANK_M, dimsm, NULL);
|
||
CHECK(memspace, FAIL, "H5Screate_simple");
|
||
|
||
/*
|
||
* Define memory hyperslab.
|
||
*/
|
||
offset_out[0] = 0;
|
||
offset_out[1] = 0;
|
||
offset_out[2] = 0;
|
||
count_out[0] = NX_SUB;
|
||
count_out[1] = NY_SUB;
|
||
count_out[2] = NZ_SUB;
|
||
status = H5Sselect_hyperslab (memspace, H5S_SELECT_SET, offset_out, NULL,
|
||
count_out, NULL);
|
||
CHECK(status, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/*
|
||
* Read data from hyperslab in the file into the hyperslab in
|
||
* memory and display.
|
||
*/
|
||
status = H5Dread (dataset, H5T_NATIVE_SHORT, memspace, dataspace,
|
||
xfer_plist, data_out);
|
||
CHECK(status, FAIL, "H5Dread");
|
||
|
||
/* Compare data written with data read in */
|
||
tmpdata = data;
|
||
tmpdata_out = data_out;
|
||
for (j = 0; j < X; j++)
|
||
for (i = 0; i < Y; i++)
|
||
for (k = 0; k < Z; k++,tmpdata++,tmpdata_out++) {
|
||
if(*tmpdata!=*tmpdata_out) {
|
||
num_errs++;
|
||
printf("Error! j=%d, i=%d, k=%d, *tmpdata=%x, *tmpdata_out=%x\n",j,i,k,(unsigned)*tmpdata,(unsigned)*tmpdata_out);
|
||
} /* end if */
|
||
} /* end for */
|
||
|
||
/*
|
||
* Close and release resources.
|
||
*/
|
||
status=H5Dclose (dataset);
|
||
CHECK(status, FAIL, "H5Dclose");
|
||
status=H5Sclose (dataspace);
|
||
CHECK(status, FAIL, "H5Sclose");
|
||
status=H5Sclose (memspace);
|
||
CHECK(status, FAIL, "H5Sclose");
|
||
status=H5Fclose (file);
|
||
CHECK(status, FAIL, "H5Fclose");
|
||
free (data);
|
||
free (data_out);
|
||
} /* test_select_hyper_chunk() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_valid(): Test basic H5S (dataspace) selection code.
|
||
** Tests selection validity
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_valid(void)
|
||
{
|
||
herr_t error;
|
||
htri_t valid;
|
||
hid_t main_space, sub_space;
|
||
hssize_t safe_start[2]={1,1};
|
||
hsize_t safe_count[2]={1,1};
|
||
hssize_t start[2];
|
||
hsize_t dims[2],maxdims[2],size[2],count[2];
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing Selection Validity\n"));
|
||
|
||
count[0] = count[1] = 1;
|
||
dims[0] = dims[1] = maxdims[0] = maxdims[1] = 10;
|
||
|
||
main_space = H5Screate_simple(2,dims,maxdims);
|
||
CHECK(main_space, FAIL, "H5Screate_simple");
|
||
|
||
MESSAGE(8, ( "Case 1 : in the dimensions\nTry offset (4,4) and size(6,6), the original space is of size (10,10)\n"));
|
||
start[0] = start[1] = 4;
|
||
size[0] = size[1] = 6;
|
||
|
||
sub_space = H5Scopy(main_space);
|
||
CHECK(sub_space, FAIL, "H5Scopy");
|
||
|
||
error=H5Sselect_hyperslab(sub_space,H5S_SELECT_SET,start,size,count,size);
|
||
CHECK(error, FAIL, "H5Sselect_hyperslab");
|
||
|
||
valid=H5Sselect_valid(sub_space);
|
||
VERIFY(valid, TRUE, "H5Sselect_valid");
|
||
|
||
error=H5Sselect_hyperslab(sub_space,H5S_SELECT_OR,safe_start,NULL,safe_count,NULL);
|
||
CHECK(error, FAIL, "H5Sselect_hyperslab");
|
||
|
||
valid=H5Sselect_valid(sub_space);
|
||
VERIFY(valid, TRUE, "H5Sselect_valid");
|
||
|
||
error=H5Sclose(sub_space);
|
||
CHECK(error, FAIL, "H5Sclose");
|
||
|
||
MESSAGE(8, ( "Case 2 : exceed dimensions by 1\nTry offset (5,5) and size(6,6), the original space is of size (10,10)\n"));
|
||
start[0] = start[1] = 5;
|
||
size[0] = size[1] = 6;
|
||
|
||
sub_space = H5Scopy(main_space);
|
||
CHECK(sub_space, FAIL, "H5Scopy");
|
||
|
||
error=H5Sselect_hyperslab(sub_space,H5S_SELECT_SET,start,size,count,size);
|
||
CHECK(error, FAIL, "H5Sselect_hyperslab");
|
||
|
||
valid=H5Sselect_valid(sub_space);
|
||
VERIFY(valid, FALSE, "H5Sselect_valid");
|
||
|
||
error=H5Sselect_hyperslab(sub_space,H5S_SELECT_OR,safe_start,NULL,safe_count,NULL);
|
||
CHECK(error, FAIL, "H5Sselect_hyperslab");
|
||
|
||
valid=H5Sselect_valid(sub_space);
|
||
VERIFY(valid, FALSE, "H5Sselect_valid");
|
||
|
||
error=H5Sclose(sub_space);
|
||
CHECK(error, FAIL, "H5Sclose");
|
||
|
||
MESSAGE(8, ( "Case 3 : exceed dimensions by 2\nTry offset (6,6) and size(6,6), the original space is of size (10,10)\n"));
|
||
start[0] = start[1] = 6;
|
||
size[0] = size[1] = 6;
|
||
|
||
sub_space = H5Scopy(main_space);
|
||
CHECK(sub_space, FAIL, "H5Scopy");
|
||
|
||
error=H5Sselect_hyperslab(sub_space,H5S_SELECT_SET,start,size,count,size);
|
||
CHECK(error, FAIL, "H5Sselect_hyperslab");
|
||
|
||
valid=H5Sselect_valid(sub_space);
|
||
VERIFY(valid, FALSE, "H5Sselect_valid");
|
||
|
||
error=H5Sselect_hyperslab(sub_space,H5S_SELECT_OR,safe_start,NULL,safe_count,NULL);
|
||
CHECK(error, FAIL, "H5Sselect_hyperslab");
|
||
|
||
valid=H5Sselect_valid(sub_space);
|
||
VERIFY(valid, FALSE, "H5Sselect_valid");
|
||
|
||
error=H5Sclose(sub_space);
|
||
CHECK(error, FAIL, "H5Sclose");
|
||
error=H5Sclose(main_space);
|
||
CHECK(error, FAIL, "H5Sclose");
|
||
} /* test_select_valid() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_combine(): Test basic H5S (dataspace) selection code.
|
||
** Tests combining "all" and "none" selections with hyperslab
|
||
** operations.
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_combine(void)
|
||
{
|
||
hid_t base_id; /* Base dataspace for test */
|
||
hid_t all_id; /* Dataspace for "all" selection */
|
||
hid_t none_id; /* Dataspace for "none" selection */
|
||
hid_t space1; /* Temporary dataspace #1 */
|
||
hssize_t start[SPACE7_RANK]; /* Hyperslab start */
|
||
hsize_t stride[SPACE7_RANK]; /* Hyperslab stride */
|
||
hsize_t count[SPACE7_RANK]; /* Hyperslab count */
|
||
hsize_t block[SPACE7_RANK]; /* Hyperslab block */
|
||
hsize_t dims[SPACE7_RANK]={SPACE7_DIM1,SPACE7_DIM2}; /* Dimensions of dataspace */
|
||
H5S_sel_type sel_type; /* Selection type */
|
||
hssize_t nblocks; /* Number of hyperslab blocks */
|
||
hsize_t blocks[128][2][SPACE7_RANK]; /* List of blocks */
|
||
herr_t error;
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing Selection Combinations\n"));
|
||
|
||
/* Create dataspace for dataset on disk */
|
||
base_id = H5Screate_simple(SPACE7_RANK, dims, NULL);
|
||
CHECK(base_id, FAIL, "H5Screate_simple");
|
||
|
||
/* Copy base dataspace and set selection to "all" */
|
||
all_id=H5Scopy(base_id);
|
||
CHECK(all_id, FAIL, "H5Scopy");
|
||
error=H5Sselect_all(all_id);
|
||
CHECK(error, FAIL, "H5Sselect_all");
|
||
sel_type=H5Sget_select_type(all_id);
|
||
VERIFY(sel_type, H5S_SEL_ALL, "H5Sget_select_type");
|
||
|
||
/* Copy base dataspace and set selection to "none" */
|
||
none_id=H5Scopy(base_id);
|
||
CHECK(none_id, FAIL, "H5Scopy");
|
||
error=H5Sselect_none(none_id);
|
||
CHECK(error, FAIL, "H5Sselect_all");
|
||
sel_type=H5Sget_select_type(none_id);
|
||
VERIFY(sel_type, H5S_SEL_NONE, "H5Sget_select_type");
|
||
|
||
|
||
/* Copy "all" selection & space */
|
||
space1=H5Scopy(all_id);
|
||
CHECK(space1, FAIL, "H5Scopy");
|
||
|
||
/* 'OR' "all" selection with another hyperslab */
|
||
start[0]=start[1]=0;
|
||
stride[0]=stride[1]=1;
|
||
count[0]=count[1]=1;
|
||
block[0]=block[1]=5;
|
||
error=H5Sselect_hyperslab(space1,H5S_SELECT_OR,start,stride,count,block);
|
||
CHECK(error, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Verify that it's still "all" selection */
|
||
sel_type=H5Sget_select_type(space1);
|
||
VERIFY(sel_type, H5S_SEL_ALL, "H5Sget_select_type");
|
||
|
||
/* Close temporary dataspace */
|
||
error=H5Sclose(space1);
|
||
CHECK(error, FAIL, "H5Sclose");
|
||
|
||
/* Copy "all" selection & space */
|
||
space1=H5Scopy(all_id);
|
||
CHECK(space1, FAIL, "H5Scopy");
|
||
|
||
/* 'AND' "all" selection with another hyperslab */
|
||
start[0]=start[1]=0;
|
||
stride[0]=stride[1]=1;
|
||
count[0]=count[1]=1;
|
||
block[0]=block[1]=5;
|
||
error=H5Sselect_hyperslab(space1,H5S_SELECT_AND,start,stride,count,block);
|
||
CHECK(error, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Verify that the new selection is the same at the original block */
|
||
sel_type=H5Sget_select_type(space1);
|
||
VERIFY(sel_type, H5S_SEL_HYPERSLABS, "H5Sget_select_type");
|
||
|
||
/* Verify that there is only one block */
|
||
nblocks=H5Sget_select_hyper_nblocks(space1);
|
||
VERIFY(nblocks, 1, "H5Sget_select_hyper_nblocks");
|
||
|
||
/* Retrieve the block defined */
|
||
HDmemset(blocks,-1,sizeof(blocks)); /* Reset block list */
|
||
error=H5Sget_select_hyper_blocklist(space1,(hsize_t)0,(hsize_t)nblocks,(hsize_t *)blocks);
|
||
CHECK(error, FAIL, "H5Sget_select_hyper_blocklist");
|
||
|
||
/* Verify that the correct block is defined */
|
||
VERIFY(blocks[0][0][0], (hsize_t)start[0], "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[0][0][1], (hsize_t)start[1], "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[0][1][0], (block[0]-1), "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[0][1][1], (block[1]-1), "H5Sget_select_hyper_blocklist");
|
||
|
||
/* Close temporary dataspace */
|
||
error=H5Sclose(space1);
|
||
CHECK(error, FAIL, "H5Sclose");
|
||
|
||
/* Copy "all" selection & space */
|
||
space1=H5Scopy(all_id);
|
||
CHECK(space1, FAIL, "H5Scopy");
|
||
|
||
/* 'XOR' "all" selection with another hyperslab */
|
||
start[0]=start[1]=0;
|
||
stride[0]=stride[1]=1;
|
||
count[0]=count[1]=1;
|
||
block[0]=block[1]=5;
|
||
error=H5Sselect_hyperslab(space1,H5S_SELECT_XOR,start,stride,count,block);
|
||
CHECK(error, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Verify that the new selection is an inversion of the original block */
|
||
sel_type=H5Sget_select_type(space1);
|
||
VERIFY(sel_type, H5S_SEL_HYPERSLABS, "H5Sget_select_type");
|
||
|
||
/* Verify that there are two blocks */
|
||
nblocks=H5Sget_select_hyper_nblocks(space1);
|
||
VERIFY(nblocks, 2, "H5Sget_select_hyper_nblocks");
|
||
|
||
/* Retrieve the block defined */
|
||
HDmemset(blocks,-1,sizeof(blocks)); /* Reset block list */
|
||
error=H5Sget_select_hyper_blocklist(space1,(hsize_t)0,(hsize_t)nblocks,(hsize_t *)blocks);
|
||
CHECK(error, FAIL, "H5Sget_select_hyper_blocklist");
|
||
|
||
/* Verify that the correct block is defined */
|
||
VERIFY(blocks[0][0][0], 0, "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[0][0][1], 5, "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[0][1][0], 4, "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[0][1][1], 9, "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[1][0][0], 5, "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[1][0][1], 0, "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[1][1][0], 9, "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[1][1][1], 9, "H5Sget_select_hyper_blocklist");
|
||
|
||
/* Close temporary dataspace */
|
||
error=H5Sclose(space1);
|
||
CHECK(error, FAIL, "H5Sclose");
|
||
|
||
/* Copy "all" selection & space */
|
||
space1=H5Scopy(all_id);
|
||
CHECK(space1, FAIL, "H5Scopy");
|
||
|
||
/* 'NOTB' "all" selection with another hyperslab */
|
||
start[0]=start[1]=0;
|
||
stride[0]=stride[1]=1;
|
||
count[0]=count[1]=1;
|
||
block[0]=block[1]=5;
|
||
error=H5Sselect_hyperslab(space1,H5S_SELECT_NOTB,start,stride,count,block);
|
||
CHECK(error, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Verify that the new selection is an inversion of the original block */
|
||
sel_type=H5Sget_select_type(space1);
|
||
VERIFY(sel_type, H5S_SEL_HYPERSLABS, "H5Sget_select_type");
|
||
|
||
/* Verify that there are two blocks */
|
||
nblocks=H5Sget_select_hyper_nblocks(space1);
|
||
VERIFY(nblocks, 2, "H5Sget_select_hyper_nblocks");
|
||
|
||
/* Retrieve the block defined */
|
||
HDmemset(blocks,-1,sizeof(blocks)); /* Reset block list */
|
||
error=H5Sget_select_hyper_blocklist(space1,(hsize_t)0,(hsize_t)nblocks,(hsize_t *)blocks);
|
||
CHECK(error, FAIL, "H5Sget_select_hyper_blocklist");
|
||
|
||
/* Verify that the correct block is defined */
|
||
VERIFY(blocks[0][0][0], 0, "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[0][0][1], 5, "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[0][1][0], 4, "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[0][1][1], 9, "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[1][0][0], 5, "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[1][0][1], 0, "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[1][1][0], 9, "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[1][1][1], 9, "H5Sget_select_hyper_blocklist");
|
||
|
||
/* Close temporary dataspace */
|
||
error=H5Sclose(space1);
|
||
CHECK(error, FAIL, "H5Sclose");
|
||
|
||
/* Copy "all" selection & space */
|
||
space1=H5Scopy(all_id);
|
||
CHECK(space1, FAIL, "H5Scopy");
|
||
|
||
/* 'NOTA' "all" selection with another hyperslab */
|
||
start[0]=start[1]=0;
|
||
stride[0]=stride[1]=1;
|
||
count[0]=count[1]=1;
|
||
block[0]=block[1]=5;
|
||
error=H5Sselect_hyperslab(space1,H5S_SELECT_NOTA,start,stride,count,block);
|
||
CHECK(error, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Verify that the new selection is the "none" selection */
|
||
sel_type=H5Sget_select_type(space1);
|
||
VERIFY(sel_type, H5S_SEL_NONE, "H5Sget_select_type");
|
||
|
||
/* Close temporary dataspace */
|
||
error=H5Sclose(space1);
|
||
CHECK(error, FAIL, "H5Sclose");
|
||
|
||
|
||
/* Copy "none" selection & space */
|
||
space1=H5Scopy(none_id);
|
||
CHECK(space1, FAIL, "H5Scopy");
|
||
|
||
/* 'OR' "none" selection with another hyperslab */
|
||
start[0]=start[1]=0;
|
||
stride[0]=stride[1]=1;
|
||
count[0]=count[1]=1;
|
||
block[0]=block[1]=5;
|
||
error=H5Sselect_hyperslab(space1,H5S_SELECT_OR,start,stride,count,block);
|
||
CHECK(error, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Verify that the new selection is the same as the original hyperslab */
|
||
sel_type=H5Sget_select_type(space1);
|
||
VERIFY(sel_type, H5S_SEL_HYPERSLABS, "H5Sget_select_type");
|
||
|
||
/* Verify that there is only one block */
|
||
nblocks=H5Sget_select_hyper_nblocks(space1);
|
||
VERIFY(nblocks, 1, "H5Sget_select_hyper_nblocks");
|
||
|
||
/* Retrieve the block defined */
|
||
HDmemset(blocks,-1,sizeof(blocks)); /* Reset block list */
|
||
error=H5Sget_select_hyper_blocklist(space1,(hsize_t)0,(hsize_t)nblocks,(hsize_t *)blocks);
|
||
CHECK(error, FAIL, "H5Sget_select_hyper_blocklist");
|
||
|
||
/* Verify that the correct block is defined */
|
||
VERIFY(blocks[0][0][0], (hsize_t)start[0], "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[0][0][1], (hsize_t)start[1], "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[0][1][0], (block[0]-1), "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[0][1][1], (block[1]-1), "H5Sget_select_hyper_blocklist");
|
||
|
||
/* Close temporary dataspace */
|
||
error=H5Sclose(space1);
|
||
CHECK(error, FAIL, "H5Sclose");
|
||
|
||
/* Copy "none" selection & space */
|
||
space1=H5Scopy(none_id);
|
||
CHECK(space1, FAIL, "H5Scopy");
|
||
|
||
/* 'AND' "none" selection with another hyperslab */
|
||
start[0]=start[1]=0;
|
||
stride[0]=stride[1]=1;
|
||
count[0]=count[1]=1;
|
||
block[0]=block[1]=5;
|
||
error=H5Sselect_hyperslab(space1,H5S_SELECT_AND,start,stride,count,block);
|
||
CHECK(error, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Verify that the new selection is the "none" selection */
|
||
sel_type=H5Sget_select_type(space1);
|
||
VERIFY(sel_type, H5S_SEL_NONE, "H5Sget_select_type");
|
||
|
||
/* Close temporary dataspace */
|
||
error=H5Sclose(space1);
|
||
CHECK(error, FAIL, "H5Sclose");
|
||
|
||
/* Copy "none" selection & space */
|
||
space1=H5Scopy(none_id);
|
||
CHECK(space1, FAIL, "H5Scopy");
|
||
|
||
/* 'XOR' "none" selection with another hyperslab */
|
||
start[0]=start[1]=0;
|
||
stride[0]=stride[1]=1;
|
||
count[0]=count[1]=1;
|
||
block[0]=block[1]=5;
|
||
error=H5Sselect_hyperslab(space1,H5S_SELECT_XOR,start,stride,count,block);
|
||
CHECK(error, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Verify that the new selection is the same as the original hyperslab */
|
||
sel_type=H5Sget_select_type(space1);
|
||
VERIFY(sel_type, H5S_SEL_HYPERSLABS, "H5Sget_select_type");
|
||
|
||
/* Verify that there is only one block */
|
||
nblocks=H5Sget_select_hyper_nblocks(space1);
|
||
VERIFY(nblocks, 1, "H5Sget_select_hyper_nblocks");
|
||
|
||
/* Retrieve the block defined */
|
||
HDmemset(blocks,-1,sizeof(blocks)); /* Reset block list */
|
||
error=H5Sget_select_hyper_blocklist(space1,(hsize_t)0,(hsize_t)nblocks,(hsize_t *)blocks);
|
||
CHECK(error, FAIL, "H5Sget_select_hyper_blocklist");
|
||
|
||
/* Verify that the correct block is defined */
|
||
VERIFY(blocks[0][0][0], (hsize_t)start[0], "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[0][0][1], (hsize_t)start[1], "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[0][1][0], (block[0]-1), "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[0][1][1], (block[1]-1), "H5Sget_select_hyper_blocklist");
|
||
|
||
/* Close temporary dataspace */
|
||
error=H5Sclose(space1);
|
||
CHECK(error, FAIL, "H5Sclose");
|
||
|
||
/* Copy "none" selection & space */
|
||
space1=H5Scopy(none_id);
|
||
CHECK(space1, FAIL, "H5Scopy");
|
||
|
||
/* 'NOTB' "none" selection with another hyperslab */
|
||
start[0]=start[1]=0;
|
||
stride[0]=stride[1]=1;
|
||
count[0]=count[1]=1;
|
||
block[0]=block[1]=5;
|
||
error=H5Sselect_hyperslab(space1,H5S_SELECT_NOTB,start,stride,count,block);
|
||
CHECK(error, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Verify that the new selection is the "none" selection */
|
||
sel_type=H5Sget_select_type(space1);
|
||
VERIFY(sel_type, H5S_SEL_NONE, "H5Sget_select_type");
|
||
|
||
/* Close temporary dataspace */
|
||
error=H5Sclose(space1);
|
||
CHECK(error, FAIL, "H5Sclose");
|
||
|
||
/* Copy "none" selection & space */
|
||
space1=H5Scopy(none_id);
|
||
CHECK(space1, FAIL, "H5Scopy");
|
||
|
||
/* 'NOTA' "none" selection with another hyperslab */
|
||
start[0]=start[1]=0;
|
||
stride[0]=stride[1]=1;
|
||
count[0]=count[1]=1;
|
||
block[0]=block[1]=5;
|
||
error=H5Sselect_hyperslab(space1,H5S_SELECT_NOTA,start,stride,count,block);
|
||
CHECK(error, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Verify that the new selection is the same as the original hyperslab */
|
||
sel_type=H5Sget_select_type(space1);
|
||
VERIFY(sel_type, H5S_SEL_HYPERSLABS, "H5Sget_select_type");
|
||
|
||
/* Verify that there is only one block */
|
||
nblocks=H5Sget_select_hyper_nblocks(space1);
|
||
VERIFY(nblocks, 1, "H5Sget_select_hyper_nblocks");
|
||
|
||
/* Retrieve the block defined */
|
||
HDmemset(blocks,-1,sizeof(blocks)); /* Reset block list */
|
||
error=H5Sget_select_hyper_blocklist(space1,(hsize_t)0,(hsize_t)nblocks,(hsize_t *)blocks);
|
||
CHECK(error, FAIL, "H5Sget_select_hyper_blocklist");
|
||
|
||
/* Verify that the correct block is defined */
|
||
VERIFY(blocks[0][0][0], (hsize_t)start[0], "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[0][0][1], (hsize_t)start[1], "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[0][1][0], (block[0]-1), "H5Sget_select_hyper_blocklist");
|
||
VERIFY(blocks[0][1][1], (block[1]-1), "H5Sget_select_hyper_blocklist");
|
||
|
||
/* Close temporary dataspace */
|
||
error=H5Sclose(space1);
|
||
CHECK(error, FAIL, "H5Sclose");
|
||
|
||
|
||
/* Close dataspaces */
|
||
error=H5Sclose(base_id);
|
||
CHECK(error, FAIL, "H5Sclose");
|
||
|
||
error=H5Sclose(all_id);
|
||
CHECK(error, FAIL, "H5Sclose");
|
||
|
||
error=H5Sclose(none_id);
|
||
CHECK(error, FAIL, "H5Sclose");
|
||
} /* test_select_combine() */
|
||
|
||
/*
|
||
* Typedef for iteration structure used in the fill value tests
|
||
*/
|
||
typedef struct {
|
||
unsigned short fill_value; /* The fill value to check */
|
||
size_t curr_coord; /* Current coordinate to examine */
|
||
hssize_t *coords; /* Pointer to selection's coordinates */
|
||
} fill_iter_info;
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_hyper_iter3(): Iterator for checking hyperslab iteration
|
||
**
|
||
****************************************************************/
|
||
herr_t
|
||
test_select_hyper_iter3(void *_elem,hid_t UNUSED type_id, hsize_t ndim, hssize_t *point, void *_operator_data)
|
||
{
|
||
unsigned short *tbuf=(unsigned short *)_elem; /* temporary buffer pointer */
|
||
fill_iter_info *iter_info=(fill_iter_info *)_operator_data; /* Get the pointer to the iterator information */
|
||
hssize_t *coord_ptr; /* Pointer to the coordinate information for a point*/
|
||
|
||
/* Check value in current buffer location */
|
||
if(*tbuf!=iter_info->fill_value)
|
||
return(-1);
|
||
else {
|
||
/* Check number of dimensions */
|
||
if(ndim!=SPACE7_RANK)
|
||
return(-1);
|
||
else {
|
||
/* Check Coordinates */
|
||
coord_ptr=iter_info->coords+(2*iter_info->curr_coord);
|
||
iter_info->curr_coord++;
|
||
if(coord_ptr[0]!=point[0])
|
||
return(-1);
|
||
else if(coord_ptr[1]!=point[1])
|
||
return(-1);
|
||
else
|
||
return(0);
|
||
} /* end else */
|
||
} /* end else */
|
||
} /* end test_select_hyper_iter3() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_fill_all(): Test basic H5S (dataspace) selection code.
|
||
** Tests filling "all" selections
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_fill_all(void)
|
||
{
|
||
hid_t sid1; /* Dataspace ID */
|
||
hsize_t dims1[] = {SPACE7_DIM1, SPACE7_DIM2};
|
||
int fill_value; /* Fill value */
|
||
fill_iter_info iter_info; /* Iterator information structure */
|
||
hssize_t points[SPACE7_DIM1*SPACE7_DIM2][SPACE7_RANK]; /* Coordinates of selection */
|
||
unsigned short *wbuf, /* buffer to write to disk */
|
||
*tbuf; /* temporary buffer pointer */
|
||
int i,j; /* Counters */
|
||
herr_t ret; /* Generic return value */
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing Filling 'all' Selections\n"));
|
||
|
||
/* Allocate memory buffer */
|
||
wbuf=malloc(sizeof(unsigned short)*SPACE7_DIM1*SPACE7_DIM2);
|
||
|
||
/* Initialize memory buffer */
|
||
for(i=0, tbuf=wbuf; i<SPACE7_DIM1; i++)
|
||
for(j=0; j<SPACE7_DIM2; j++)
|
||
*tbuf++=(unsigned short)(i*SPACE7_DIM2)+j;
|
||
|
||
/* Create dataspace for dataset on disk */
|
||
sid1 = H5Screate_simple(SPACE7_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Space defaults to "all" selection */
|
||
|
||
/* Set fill value */
|
||
fill_value=SPACE7_FILL;
|
||
|
||
/* Fill selection in memory */
|
||
ret=H5Dfill(&fill_value,H5T_NATIVE_INT,wbuf,H5T_NATIVE_USHORT,sid1);
|
||
CHECK(ret, FAIL, "H5Dfill");
|
||
|
||
/* Verify memory buffer the hard way... */
|
||
for(i=0, tbuf=wbuf; i<SPACE7_DIM1; i++)
|
||
for(j=0; j<SPACE7_DIM2; j++)
|
||
if(*tbuf!=(unsigned short)fill_value) {
|
||
num_errs++;
|
||
printf("Error! j=%d, i=%d, *tbuf=%x, fill_value=%x\n",j,i,(unsigned)*tbuf,(unsigned)fill_value);
|
||
} /* end if */
|
||
|
||
/* Set the coordinates of the selection */
|
||
for(i=0; i<SPACE7_DIM1; i++)
|
||
for(j=0; j<SPACE7_DIM2; j++) {
|
||
points[(i*SPACE7_DIM2)+j][0]=i;
|
||
points[(i*SPACE7_DIM2)+j][1]=j;
|
||
} /* end for */
|
||
|
||
/* Initialize the iterator structure */
|
||
iter_info.fill_value=SPACE7_FILL;
|
||
iter_info.curr_coord=0;
|
||
iter_info.coords=(hssize_t *)points;
|
||
|
||
/* Iterate through selection, verifying correct data */
|
||
ret = H5Diterate(wbuf,H5T_NATIVE_USHORT,sid1,test_select_hyper_iter3,&iter_info);
|
||
CHECK(ret, FAIL, "H5Diterate");
|
||
|
||
/* Close dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Free memory buffers */
|
||
free(wbuf);
|
||
} /* test_select_fill_all() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_fill_point(): Test basic H5S (dataspace) selection code.
|
||
** Tests filling "point" selections
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_fill_point(hssize_t *offset)
|
||
{
|
||
hid_t sid1; /* Dataspace ID */
|
||
hsize_t dims1[] = {SPACE7_DIM1, SPACE7_DIM2};
|
||
hssize_t real_offset[SPACE7_RANK]; /* Actual offset to use */
|
||
hssize_t points[5][SPACE7_RANK] = {{2,4}, {3,8}, {8,4}, {7,5}, {7,7}};
|
||
size_t num_points=5; /* Number of points selected */
|
||
int fill_value; /* Fill value */
|
||
fill_iter_info iter_info; /* Iterator information structure */
|
||
unsigned short *wbuf, /* buffer to write to disk */
|
||
*tbuf; /* temporary buffer pointer */
|
||
int i,j,k; /* Counters */
|
||
herr_t ret; /* Generic return value */
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing Filling 'point' Selections\n"));
|
||
|
||
/* Allocate memory buffer */
|
||
wbuf=malloc(sizeof(unsigned short)*SPACE7_DIM1*SPACE7_DIM2);
|
||
|
||
/* Initialize memory buffer */
|
||
for(i=0, tbuf=wbuf; i<SPACE7_DIM1; i++)
|
||
for(j=0; j<SPACE7_DIM2; j++)
|
||
*tbuf++=(unsigned short)(i*SPACE7_DIM2)+j;
|
||
|
||
/* Create dataspace for dataset on disk */
|
||
sid1 = H5Screate_simple(SPACE7_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Select "point" selection */
|
||
ret = H5Sselect_elements(sid1, H5S_SELECT_SET,num_points,(const hssize_t **)points);
|
||
CHECK(ret, FAIL, "H5Sselect_elements");
|
||
|
||
if(offset!=NULL) {
|
||
HDmemcpy(real_offset,offset,SPACE7_RANK*sizeof(hssize_t));
|
||
|
||
/* Set offset, if provided */
|
||
ret = H5Soffset_simple(sid1,real_offset);
|
||
CHECK(ret, FAIL, "H5Soffset_simple");
|
||
} /* end if */
|
||
else
|
||
HDmemset(real_offset,0,SPACE7_RANK*sizeof(hssize_t));
|
||
|
||
/* Set fill value */
|
||
fill_value=SPACE7_FILL;
|
||
|
||
/* Fill selection in memory */
|
||
ret=H5Dfill(&fill_value,H5T_NATIVE_INT,wbuf,H5T_NATIVE_USHORT,sid1);
|
||
CHECK(ret, FAIL, "H5Dfill");
|
||
|
||
/* Verify memory buffer the hard way... */
|
||
for(i=0, tbuf=wbuf; i<SPACE7_DIM1; i++)
|
||
for(j=0; j<SPACE7_DIM2; j++, tbuf++) {
|
||
for(k=0; k<(int)num_points; k++) {
|
||
if(i==(points[k][0]+real_offset[0]) && j==(points[k][1]+real_offset[1])) {
|
||
if(*tbuf!=(unsigned short)fill_value) {
|
||
num_errs++;
|
||
printf("Error! j=%d, i=%d, *tbuf=%u, fill_value=%u\n",j,i,(unsigned)*tbuf,(unsigned)fill_value);
|
||
} /* end if */
|
||
break;
|
||
} /* end if */
|
||
} /* end for */
|
||
if(k==(int)num_points && *tbuf!=((unsigned short)(i*SPACE7_DIM2)+j)) {
|
||
num_errs++;
|
||
printf("Error! j=%d, i=%d, *tbuf=%u, should be: %u\n",j,i,(unsigned)*tbuf,(unsigned)((i*SPACE7_DIM2)+j));
|
||
} /* end if */
|
||
} /* end for */
|
||
|
||
/* Initialize the iterator structure */
|
||
iter_info.fill_value=SPACE7_FILL;
|
||
iter_info.curr_coord=0;
|
||
iter_info.coords=(hssize_t *)points;
|
||
|
||
/* Add in the offset */
|
||
for(i=0; i<(int)num_points; i++) {
|
||
points[i][0]+=real_offset[0];
|
||
points[i][1]+=real_offset[1];
|
||
} /* end for */
|
||
|
||
/* Iterate through selection, verifying correct data */
|
||
ret = H5Diterate(wbuf,H5T_NATIVE_USHORT,sid1,test_select_hyper_iter3,&iter_info);
|
||
CHECK(ret, FAIL, "H5Diterate");
|
||
|
||
/* Close dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Free memory buffers */
|
||
free(wbuf);
|
||
} /* test_select_fill_point() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_fill_hyper_simple(): Test basic H5S (dataspace) selection code.
|
||
** Tests filling "simple" (i.e. one block) hyperslab selections
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_fill_hyper_simple(hssize_t *offset)
|
||
{
|
||
hid_t sid1; /* Dataspace ID */
|
||
hsize_t dims1[] = {SPACE7_DIM1, SPACE7_DIM2};
|
||
hssize_t real_offset[SPACE7_RANK]; /* Actual offset to use */
|
||
hssize_t start[SPACE7_RANK]; /* Hyperslab start */
|
||
hsize_t count[SPACE7_RANK]; /* Hyperslab block size */
|
||
size_t num_points; /* Number of points in selection */
|
||
hssize_t points[16][SPACE7_RANK]; /* Coordinates selected */
|
||
int fill_value; /* Fill value */
|
||
fill_iter_info iter_info; /* Iterator information structure */
|
||
unsigned short *wbuf, /* buffer to write to disk */
|
||
*tbuf; /* temporary buffer pointer */
|
||
int i,j; /* Counters */
|
||
herr_t ret; /* Generic return value */
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing Filling Simple 'hyperslab' Selections\n"));
|
||
|
||
/* Allocate memory buffer */
|
||
wbuf=malloc(sizeof(unsigned short)*SPACE7_DIM1*SPACE7_DIM2);
|
||
|
||
/* Initialize memory buffer */
|
||
for(i=0, tbuf=wbuf; i<SPACE7_DIM1; i++)
|
||
for(j=0; j<SPACE7_DIM2; j++)
|
||
*tbuf++=(unsigned short)(i*SPACE7_DIM2)+j;
|
||
|
||
/* Create dataspace for dataset on disk */
|
||
sid1 = H5Screate_simple(SPACE7_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Select "hyperslab" selection */
|
||
start[0]=3; start[1]=3;
|
||
count[0]=4; count[1]=4;
|
||
ret = H5Sselect_hyperslab(sid1, H5S_SELECT_SET,start,NULL,count,NULL);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
if(offset!=NULL) {
|
||
HDmemcpy(real_offset,offset,SPACE7_RANK*sizeof(hssize_t));
|
||
|
||
/* Set offset, if provided */
|
||
ret = H5Soffset_simple(sid1,real_offset);
|
||
CHECK(ret, FAIL, "H5Soffset_simple");
|
||
} /* end if */
|
||
else
|
||
HDmemset(real_offset,0,SPACE7_RANK*sizeof(hssize_t));
|
||
|
||
/* Set fill value */
|
||
fill_value=SPACE7_FILL;
|
||
|
||
/* Fill selection in memory */
|
||
ret=H5Dfill(&fill_value,H5T_NATIVE_INT,wbuf,H5T_NATIVE_USHORT,sid1);
|
||
CHECK(ret, FAIL, "H5Dfill");
|
||
|
||
/* Verify memory buffer the hard way... */
|
||
for(i=0, tbuf=wbuf; i<SPACE7_DIM1; i++)
|
||
for(j=0; j<SPACE7_DIM2; j++, tbuf++) {
|
||
if((i>=(int)(start[0]+real_offset[0]) && i<(int)(start[0]+count[0]+real_offset[0]))
|
||
&& (j>=(int)(start[1]+real_offset[1]) && j<(int)(start[1]+count[1]+real_offset[1]))) {
|
||
if(*tbuf!=(unsigned short)fill_value) {
|
||
num_errs++;
|
||
printf("Error! j=%d, i=%d, *tbuf=%u, fill_value=%u\n",j,i,(unsigned)*tbuf,(unsigned)fill_value);
|
||
} /* end if */
|
||
} /* end if */
|
||
else {
|
||
if(*tbuf!=((unsigned short)(i*SPACE7_DIM2)+j)) {
|
||
num_errs++;
|
||
printf("Error! j=%d, i=%d, *tbuf=%u, should be: %u\n",j,i,(unsigned)*tbuf,(unsigned)((i*SPACE7_DIM2)+j));
|
||
} /* end if */
|
||
} /* end else */
|
||
} /* end for */
|
||
|
||
/* Initialize the iterator structure */
|
||
iter_info.fill_value=SPACE7_FILL;
|
||
iter_info.curr_coord=0;
|
||
iter_info.coords=(hssize_t *)points;
|
||
|
||
/* Set the coordinates of the selection (with the offset) */
|
||
for(i=0, num_points=0; i<(int)count[0]; i++)
|
||
for(j=0; j<(int)count[1]; j++, num_points++) {
|
||
points[num_points][0]=i+start[0]+real_offset[0];
|
||
points[num_points][1]=j+start[1]+real_offset[1];
|
||
} /* end for */
|
||
|
||
/* Iterate through selection, verifying correct data */
|
||
ret = H5Diterate(wbuf,H5T_NATIVE_USHORT,sid1,test_select_hyper_iter3,&iter_info);
|
||
CHECK(ret, FAIL, "H5Diterate");
|
||
|
||
/* Close dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Free memory buffers */
|
||
free(wbuf);
|
||
} /* test_select_fill_hyper_simple() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_fill_hyper_regular(): Test basic H5S (dataspace) selection code.
|
||
** Tests filling "regular" (i.e. strided block) hyperslab selections
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_fill_hyper_regular(hssize_t *offset)
|
||
{
|
||
hid_t sid1; /* Dataspace ID */
|
||
hsize_t dims1[] = {SPACE7_DIM1, SPACE7_DIM2};
|
||
hssize_t real_offset[SPACE7_RANK]; /* Actual offset to use */
|
||
hssize_t start[SPACE7_RANK]; /* Hyperslab start */
|
||
hsize_t stride[SPACE7_RANK]; /* Hyperslab stride size */
|
||
hsize_t count[SPACE7_RANK]; /* Hyperslab block count */
|
||
hsize_t block[SPACE7_RANK]; /* Hyperslab block size */
|
||
hssize_t points[16][SPACE7_RANK] = {
|
||
{2,2}, {2,3}, {2,6}, {2,7},
|
||
{3,2}, {3,3}, {3,6}, {3,7},
|
||
{6,2}, {6,3}, {6,6}, {6,7},
|
||
{7,2}, {7,3}, {7,6}, {7,7},
|
||
};
|
||
size_t num_points=16; /* Number of points selected */
|
||
int fill_value; /* Fill value */
|
||
fill_iter_info iter_info; /* Iterator information structure */
|
||
unsigned short *wbuf, /* buffer to write to disk */
|
||
*tbuf; /* temporary buffer pointer */
|
||
int i,j,k; /* Counters */
|
||
herr_t ret; /* Generic return value */
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing Filling Regular 'hyperslab' Selections\n"));
|
||
|
||
/* Allocate memory buffer */
|
||
wbuf=malloc(sizeof(unsigned short)*SPACE7_DIM1*SPACE7_DIM2);
|
||
|
||
/* Initialize memory buffer */
|
||
for(i=0, tbuf=wbuf; i<SPACE7_DIM1; i++)
|
||
for(j=0; j<SPACE7_DIM2; j++)
|
||
*tbuf++=(unsigned short)(i*SPACE7_DIM2)+j;
|
||
|
||
/* Create dataspace for dataset on disk */
|
||
sid1 = H5Screate_simple(SPACE7_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Select "hyperslab" selection */
|
||
start[0]=2; start[1]=2;
|
||
stride[0]=4; stride[1]=4;
|
||
count[0]=2; count[1]=2;
|
||
block[0]=2; block[1]=2;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_SET,start,stride,count,block);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
if(offset!=NULL) {
|
||
HDmemcpy(real_offset,offset,SPACE7_RANK*sizeof(hssize_t));
|
||
|
||
/* Set offset, if provided */
|
||
ret = H5Soffset_simple(sid1,real_offset);
|
||
CHECK(ret, FAIL, "H5Soffset_simple");
|
||
} /* end if */
|
||
else
|
||
HDmemset(real_offset,0,SPACE7_RANK*sizeof(hssize_t));
|
||
|
||
/* Set fill value */
|
||
fill_value=SPACE7_FILL;
|
||
|
||
/* Fill selection in memory */
|
||
ret=H5Dfill(&fill_value,H5T_NATIVE_INT,wbuf,H5T_NATIVE_USHORT,sid1);
|
||
CHECK(ret, FAIL, "H5Dfill");
|
||
|
||
/* Verify memory buffer the hard way... */
|
||
for(i=0, tbuf=wbuf; i<SPACE7_DIM1; i++)
|
||
for(j=0; j<SPACE7_DIM2; j++, tbuf++) {
|
||
for(k=0; k<(int)num_points; k++) {
|
||
if(i==(points[k][0]+real_offset[0]) && j==(points[k][1]+real_offset[1])) {
|
||
if(*tbuf!=(unsigned short)fill_value) {
|
||
num_errs++;
|
||
printf("Error! j=%d, i=%d, *tbuf=%u, fill_value=%u\n",j,i,(unsigned)*tbuf,(unsigned)fill_value);
|
||
} /* end if */
|
||
break;
|
||
} /* end if */
|
||
} /* end for */
|
||
if(k==(int)num_points && *tbuf!=((unsigned short)(i*SPACE7_DIM2)+j)) {
|
||
num_errs++;
|
||
printf("Error! j=%d, i=%d, *tbuf=%u, should be: %u\n",j,i,(unsigned)*tbuf,(unsigned)((i*SPACE7_DIM2)+j));
|
||
} /* end if */
|
||
} /* end for */
|
||
|
||
/* Initialize the iterator structure */
|
||
iter_info.fill_value=SPACE7_FILL;
|
||
iter_info.curr_coord=0;
|
||
iter_info.coords=(hssize_t *)points;
|
||
|
||
/* Add in the offset */
|
||
for(i=0; i<(int)num_points; i++) {
|
||
points[i][0]+=real_offset[0];
|
||
points[i][1]+=real_offset[1];
|
||
} /* end for */
|
||
|
||
/* Iterate through selection, verifying correct data */
|
||
ret = H5Diterate(wbuf,H5T_NATIVE_USHORT,sid1,test_select_hyper_iter3,&iter_info);
|
||
CHECK(ret, FAIL, "H5Diterate");
|
||
|
||
/* Close dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Free memory buffers */
|
||
free(wbuf);
|
||
} /* test_select_fill_hyper_regular() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select_fill_hyper_irregular(): Test basic H5S (dataspace) selection code.
|
||
** Tests filling "irregular" (i.e. combined blocks) hyperslab selections
|
||
**
|
||
****************************************************************/
|
||
static void
|
||
test_select_fill_hyper_irregular(hssize_t *offset)
|
||
{
|
||
hid_t sid1; /* Dataspace ID */
|
||
hsize_t dims1[] = {SPACE7_DIM1, SPACE7_DIM2};
|
||
hssize_t real_offset[SPACE7_RANK]; /* Actual offset to use */
|
||
hssize_t start[SPACE7_RANK]; /* Hyperslab start */
|
||
hsize_t count[SPACE7_RANK]; /* Hyperslab block count */
|
||
hssize_t points[32][SPACE7_RANK] = { /* Yes, some of the are duplicated.. */
|
||
{2,2}, {2,3}, {2,4}, {2,5},
|
||
{3,2}, {3,3}, {3,4}, {3,5},
|
||
{4,2}, {4,3}, {4,4}, {4,5},
|
||
{5,2}, {5,3}, {5,4}, {5,5},
|
||
{4,4}, {4,5}, {4,6}, {4,7},
|
||
{5,4}, {5,5}, {5,6}, {5,7},
|
||
{6,4}, {6,5}, {6,6}, {6,7},
|
||
{7,4}, {7,5}, {7,6}, {7,7},
|
||
};
|
||
hssize_t iter_points[28][SPACE7_RANK] = { /* Coordinates, as iterated through */
|
||
{2,2}, {2,3}, {2,4}, {2,5},
|
||
{3,2}, {3,3}, {3,4}, {3,5},
|
||
{4,2}, {4,3}, {4,4}, {4,5}, {4,6}, {4,7},
|
||
{5,2}, {5,3}, {5,4}, {5,5}, {5,6}, {5,7},
|
||
{6,4}, {6,5}, {6,6}, {6,7},
|
||
{7,4}, {7,5}, {7,6}, {7,7},
|
||
};
|
||
size_t num_points=32; /* Number of points selected */
|
||
size_t num_iter_points=28; /* Number of resulting points */
|
||
int fill_value; /* Fill value */
|
||
fill_iter_info iter_info; /* Iterator information structure */
|
||
unsigned short *wbuf, /* buffer to write to disk */
|
||
*tbuf; /* temporary buffer pointer */
|
||
int i,j,k; /* Counters */
|
||
herr_t ret; /* Generic return value */
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing Filling Irregular 'hyperslab' Selections\n"));
|
||
|
||
/* Allocate memory buffer */
|
||
wbuf=malloc(sizeof(unsigned short)*SPACE7_DIM1*SPACE7_DIM2);
|
||
|
||
/* Initialize memory buffer */
|
||
for(i=0, tbuf=wbuf; i<SPACE7_DIM1; i++)
|
||
for(j=0; j<SPACE7_DIM2; j++)
|
||
*tbuf++=(unsigned short)(i*SPACE7_DIM2)+j;
|
||
|
||
/* Create dataspace for dataset on disk */
|
||
sid1 = H5Screate_simple(SPACE7_RANK, dims1, NULL);
|
||
CHECK(sid1, FAIL, "H5Screate_simple");
|
||
|
||
/* Select first "hyperslab" selection */
|
||
start[0]=2; start[1]=2;
|
||
count[0]=4; count[1]=4;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_SET,start,NULL,count,NULL);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
/* Combine with second "hyperslab" selection */
|
||
start[0]=4; start[1]=4;
|
||
count[0]=4; count[1]=4;
|
||
ret = H5Sselect_hyperslab(sid1,H5S_SELECT_OR,start,NULL,count,NULL);
|
||
CHECK(ret, FAIL, "H5Sselect_hyperslab");
|
||
|
||
if(offset!=NULL) {
|
||
HDmemcpy(real_offset,offset,SPACE7_RANK*sizeof(hssize_t));
|
||
|
||
/* Set offset, if provided */
|
||
ret = H5Soffset_simple(sid1,real_offset);
|
||
CHECK(ret, FAIL, "H5Soffset_simple");
|
||
} /* end if */
|
||
else
|
||
HDmemset(real_offset,0,SPACE7_RANK*sizeof(hssize_t));
|
||
|
||
/* Set fill value */
|
||
fill_value=SPACE7_FILL;
|
||
|
||
/* Fill selection in memory */
|
||
ret=H5Dfill(&fill_value,H5T_NATIVE_INT,wbuf,H5T_NATIVE_USHORT,sid1);
|
||
CHECK(ret, FAIL, "H5Dfill");
|
||
|
||
/* Verify memory buffer the hard way... */
|
||
for(i=0, tbuf=wbuf; i<SPACE7_DIM1; i++)
|
||
for(j=0; j<SPACE7_DIM2; j++, tbuf++) {
|
||
for(k=0; k<(int)num_points; k++) {
|
||
if(i==(points[k][0]+real_offset[0]) && j==(points[k][1]+real_offset[1])) {
|
||
if(*tbuf!=(unsigned short)fill_value) {
|
||
num_errs++;
|
||
printf("Error! j=%d, i=%d, *tbuf=%u, fill_value=%u\n",j,i,(unsigned)*tbuf,(unsigned)fill_value);
|
||
} /* end if */
|
||
break;
|
||
} /* end if */
|
||
} /* end for */
|
||
if(k==(int)num_points && *tbuf!=((unsigned short)(i*SPACE7_DIM2)+j)) {
|
||
num_errs++;
|
||
printf("Error! j=%d, i=%d, *tbuf=%u, should be: %u\n",j,i,(unsigned)*tbuf,(unsigned)((i*SPACE7_DIM2)+j));
|
||
} /* end if */
|
||
} /* end for */
|
||
|
||
/* Initialize the iterator structure */
|
||
iter_info.fill_value=SPACE7_FILL;
|
||
iter_info.curr_coord=0;
|
||
iter_info.coords=(hssize_t *)iter_points;
|
||
|
||
/* Add in the offset */
|
||
for(i=0; i<(int)num_iter_points; i++) {
|
||
iter_points[i][0]+=real_offset[0];
|
||
iter_points[i][1]+=real_offset[1];
|
||
} /* end for */
|
||
|
||
/* Iterate through selection, verifying correct data */
|
||
ret = H5Diterate(wbuf,H5T_NATIVE_USHORT,sid1,test_select_hyper_iter3,&iter_info);
|
||
CHECK(ret, FAIL, "H5Diterate");
|
||
|
||
/* Close dataspace */
|
||
ret = H5Sclose(sid1);
|
||
CHECK(ret, FAIL, "H5Sclose");
|
||
|
||
/* Free memory buffers */
|
||
free(wbuf);
|
||
} /* test_select_fill_hyper_irregular() */
|
||
|
||
/****************************************************************
|
||
**
|
||
** test_select(): Main H5S selection testing routine.
|
||
**
|
||
****************************************************************/
|
||
void
|
||
test_select(void)
|
||
{
|
||
hid_t plist_id; /* Property list for reading random hyperslabs */
|
||
hid_t fapl; /* Property list accessing the file */
|
||
int mdc_nelmts; /* Metadata number of elements */
|
||
#ifdef H5_WANT_H5_V1_4_COMPAT
|
||
int rdcc_nelmts; /* Raw data number of elements */
|
||
#else /* H5_WANT_H5_V1_4_COMPAT */
|
||
size_t rdcc_nelmts; /* Raw data number of elements */
|
||
#endif /* H5_WANT_H5_V1_4_COMPAT */
|
||
size_t rdcc_nbytes; /* Raw data number of bytes */
|
||
double rdcc_w0; /* Raw data write percentage */
|
||
hssize_t offset[SPACE7_RANK]={1,1}; /* Offset for testing selection offsets */
|
||
herr_t ret; /* Generic return value */
|
||
|
||
/* Output message about test being performed */
|
||
MESSAGE(5, ("Testing Selections\n"));
|
||
|
||
/* Create a dataset transfer property list */
|
||
plist_id=H5Pcreate(H5P_DATASET_XFER);
|
||
CHECK(plist_id, FAIL, "H5Pcreate");
|
||
|
||
/* test I/O with a very small buffer for reads */
|
||
ret=H5Pset_buffer(plist_id,59,NULL,NULL);
|
||
CHECK(ret, FAIL, "H5Pset_buffer");
|
||
|
||
/* These next tests use the same file */
|
||
test_select_hyper(H5P_DEFAULT); /* Test basic H5S hyperslab selection code */
|
||
test_select_hyper(plist_id); /* Test basic H5S hyperslab selection code */
|
||
test_select_point(H5P_DEFAULT); /* Test basic H5S element selection code, also tests appending to existing element selections */
|
||
test_select_point(plist_id); /* Test basic H5S element selection code, also tests appending to existing element selections */
|
||
test_select_all(H5P_DEFAULT); /* Test basic all & none selection code */
|
||
test_select_all(plist_id); /* Test basic all & none selection code */
|
||
test_select_all_hyper(H5P_DEFAULT); /* Test basic all & none selection code */
|
||
test_select_all_hyper(plist_id); /* Test basic all & none selection code */
|
||
|
||
/* These next tests use the same file */
|
||
test_select_combo(); /* Test combined hyperslab & element selection code */
|
||
test_select_hyper_stride(H5P_DEFAULT); /* Test strided hyperslab selection code */
|
||
test_select_hyper_stride(plist_id); /* Test strided hyperslab selection code */
|
||
test_select_hyper_contig(H5T_STD_U16LE,H5P_DEFAULT); /* Test contiguous hyperslab selection code */
|
||
test_select_hyper_contig(H5T_STD_U16LE,plist_id); /* Test contiguous hyperslab selection code */
|
||
test_select_hyper_contig(H5T_STD_U16BE,H5P_DEFAULT); /* Test contiguous hyperslab selection code */
|
||
test_select_hyper_contig(H5T_STD_U16BE,plist_id); /* Test contiguous hyperslab selection code */
|
||
test_select_hyper_contig2(H5T_STD_U16LE,H5P_DEFAULT); /* Test more contiguous hyperslab selection cases */
|
||
test_select_hyper_contig2(H5T_STD_U16LE,plist_id); /* Test more contiguous hyperslab selection cases */
|
||
test_select_hyper_contig2(H5T_STD_U16BE,H5P_DEFAULT); /* Test more contiguous hyperslab selection cases */
|
||
test_select_hyper_contig2(H5T_STD_U16BE,plist_id); /* Test more contiguous hyperslab selection cases */
|
||
test_select_hyper_copy(); /* Test hyperslab selection copying code */
|
||
test_select_point_copy(); /* Test point selection copying code */
|
||
test_select_hyper_offset(); /* Test selection offset code with hyperslabs */
|
||
test_select_hyper_offset2();/* Test more selection offset code with hyperslabs */
|
||
test_select_point_offset(); /* Test selection offset code with elements */
|
||
test_select_hyper_union(); /* Test hyperslab union code */
|
||
#ifdef NEW_HYPERSLAB_API
|
||
test_select_hyper_union_stagger(); /* Test hyperslab union code for staggered slabs */
|
||
test_select_hyper_union_3d(); /* Test hyperslab union code for 3-D dataset */
|
||
#endif /* NEW_HYPERSLAB_API */
|
||
test_select_hyper_and_2d(); /* Test hyperslab intersection (AND) code for 2-D dataset */
|
||
test_select_hyper_xor_2d(); /* Test hyperslab XOR code for 2-D dataset */
|
||
test_select_hyper_notb_2d(); /* Test hyperslab NOTB code for 2-D dataset */
|
||
test_select_hyper_nota_2d(); /* Test hyperslab NOTA code for 2-D dataset */
|
||
|
||
/* test the random hyperslab I/O with the default property list for reading */
|
||
test_select_hyper_union_random_5d(H5P_DEFAULT); /* Test hyperslab union code for random 5-D hyperslabs */
|
||
|
||
/* test random hyperslab I/O with a small buffer for reads */
|
||
test_select_hyper_union_random_5d(plist_id); /* Test hyperslab union code for random 5-D hyperslabs */
|
||
|
||
/* Create a dataset transfer property list */
|
||
fapl=H5Pcreate(H5P_FILE_ACCESS);
|
||
CHECK(fapl, FAIL, "H5Pcreate");
|
||
|
||
/* Get the default file access properties for caching */
|
||
ret=H5Pget_cache(fapl,&mdc_nelmts,&rdcc_nelmts,&rdcc_nbytes,&rdcc_w0);
|
||
CHECK(ret, FAIL, "H5Pget_cache");
|
||
|
||
/* Increase the size of the raw data cache */
|
||
rdcc_nbytes=10*1024*1024;
|
||
|
||
/* Set the file access properties for caching */
|
||
ret=H5Pset_cache(fapl,mdc_nelmts,rdcc_nelmts,rdcc_nbytes,rdcc_w0);
|
||
CHECK(ret, FAIL, "H5Pset_cache");
|
||
|
||
/* Test reading in a large hyperslab with a chunked dataset */
|
||
test_select_hyper_chunk(fapl,H5P_DEFAULT);
|
||
|
||
/* Test reading in a large hyperslab with a chunked dataset a small amount at a time */
|
||
test_select_hyper_chunk(fapl,plist_id);
|
||
|
||
/* Close file access property list */
|
||
ret=H5Pclose(fapl);
|
||
CHECK(ret, FAIL, "H5Pclose");
|
||
|
||
/* Close dataset transfer property list */
|
||
ret=H5Pclose(plist_id);
|
||
CHECK(ret, FAIL, "H5Pclose");
|
||
|
||
/* More tests for checking validity of selections */
|
||
test_select_valid();
|
||
|
||
/* Tests for combining "all" and "none" selections with hyperslabs */
|
||
test_select_combine();
|
||
|
||
/* Test filling selections */
|
||
/* (Also tests iterating through each selection */
|
||
test_select_fill_all();
|
||
test_select_fill_point(NULL);
|
||
test_select_fill_point(offset);
|
||
test_select_fill_hyper_simple(NULL);
|
||
test_select_fill_hyper_simple(offset);
|
||
test_select_fill_hyper_regular(NULL);
|
||
test_select_fill_hyper_regular(offset);
|
||
test_select_fill_hyper_irregular(NULL);
|
||
test_select_fill_hyper_irregular(offset);
|
||
|
||
} /* test_select() */
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: cleanup_select
|
||
*
|
||
* Purpose: Cleanup temporary test files
|
||
*
|
||
* Return: none
|
||
*
|
||
* Programmer: Albert Cheng
|
||
* July 2, 1998
|
||
*
|
||
* Modifications:
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
void
|
||
cleanup_select(void)
|
||
{
|
||
remove(FILENAME);
|
||
}
|
||
|