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522 lines
15 KiB
Bash
Executable File
522 lines
15 KiB
Bash
Executable File
#! /bin/sh
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#
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# Copyright by The HDF Group.
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# Copyright by the Board of Trustees of the University of Illinois.
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# All rights reserved.
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#
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# This file is part of HDF5. The full HDF5 copyright notice, including
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# terms governing use, modification, and redistribution, is contained in
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# the files COPYING and Copyright.html. COPYING can be found at the root
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# of the source code distribution tree; Copyright.html can be found at the
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# root level of an installed copy of the electronic HDF5 document set and
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# is linked from the top-level documents page. It can also be found at
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# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
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# access to either file, you may request a copy from help@hdfgroup.org.
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#
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# Tests for the h5diff tool
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#
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# Modification:
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# Albert Cheng, 2005/08/17
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# Added the SKIP feature.
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# Albert Cheng, 2005/2/3
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# Added -p option for parallel h5diff tests.
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# Pedro Vicente Nunes:
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# 10/25/2005: Added test #9
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# 11/27/2006: Added test #10, #11
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###############################################################################
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## test file names
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###############################################################################
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FILE1=h5diff_basic1.h5
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FILE2=h5diff_basic2.h5
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FILE3=h5diff_types.h5
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FILE4=h5diff_dtypes.h5
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FILE5=h5diff_attr1.h5
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FILE6=h5diff_attr2.h5
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FILE7=h5diff_dset1.h5
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FILE8=h5diff_dset2.h5
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FILE9=h5diff_hyper1.h5
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FILE10=h5diff_hyper2.h5
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H5DIFF=h5diff # The tool name
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H5DIFF_BIN=`pwd`/$H5DIFF # The path of the tool binary
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CMP='cmp -s'
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DIFF='diff -c'
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nerrors=0
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verbose=yes
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pmode= # default to run h5diff tests
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# The build (current) directory might be different than the source directory.
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if test -z "$srcdir"; then
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srcdir=.
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fi
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test -d ../testfiles || mkdir ../testfiles
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# Parse option
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# -p run ph5diff tests
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# -h print help page
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while [ $# -gt 0 ]; do
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case "$1" in
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-p) # run ph5diff tests
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H5DIFF_BIN=`pwd`/ph5diff
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pmode=yes
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shift
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;;
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-h) # print help page
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echo "$0 [-p] [-h]"
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echo " -p run ph5diff tests"
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echo " -h print help page"
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shift
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exit 0
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;;
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*) # unknown option
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echo "$0: Unknown option ($1)"
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exit 1
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;;
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esac
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done
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# Print a line-line message left justified in a field of 70 characters
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# beginning with the word "Testing".
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#
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TESTING() {
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SPACES=" "
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echo "Testing $* $SPACES" | cut -c1-70 | tr -d '\012'
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}
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# Some systems will dump some messages to stdout for various reasons.
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# Remove them from the stdout result file.
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# $1 is the file name of the file to be filtered.
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# Cases of filter needed:
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# 1. Sandia Red-Storm
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# yod always prints these two lines at the beginning.
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# LibLustre: NAL NID: 0004a605 (5)
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# Lustre: OBD class driver Build Version: 1, info@clusterfs.com
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# 2. LANL Lambda
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# mpijob mirun -np always add an extra line at the end like:
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# P4 procgroup file is /users/acheng/.lsbatch/host10524.l82
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STDOUT_FILTER() {
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result_file=$1
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tmp_file=/tmp/h5test_tmp_$$
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# Filter Sandia Red-Storm yod messages.
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cp $result_file $tmp_file
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sed -e '/^LibLustre:/d' -e '/^Lustre:/d' \
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< $tmp_file > $result_file
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# Filter LANL Lambda mpirun message.
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cp $result_file $tmp_file
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sed -e '/^P4 procgroup file is/d' \
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< $tmp_file > $result_file
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# cleanup
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rm -f $tmp_file
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}
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# Some systems will dump some messages to stderr for various reasons.
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# Remove them from the stderr result file.
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# $1 is the file name of the file to be filtered.
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# Cases of filter needed:
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# 1. MPE:
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# In parallel mode and if MPE library is used, it prints the following
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# two message lines whether the MPE tracing is used or not.
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# Writing logfile.
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# Finished writing logfile.
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# 2. LANL MPI:
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# The LANL MPI will print some messages like the following,
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# LA-MPI: *** mpirun (1.5.10)
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# LA-MPI: *** 3 process(es) on 2 host(s): 2*fln21 1*fln22
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# LA-MPI: *** libmpi (1.5.10)
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# LA-MPI: *** Copyright 2001-2004, ACL, Los Alamos National Laboratory
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# 3. h5diff debug output:
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# Debug output all have prefix "h5diff debug: ".
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STDERR_FILTER() {
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result_file=$1
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tmp_file=/tmp/h5test_tmp_$$
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# Filter MPE messages
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if test -n "$pmode"; then
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cp $result_file $tmp_file
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sed -e '/^Writing logfile./d' -e '/^Finished writing logfile./d' \
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< $tmp_file > $result_file
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fi
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# Filter LANL MPI messages
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# and LLNL srun messages
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if test -n "$pmode"; then
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cp $result_file $tmp_file
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sed -e '/^LA-MPI:/d' -e '/^srun:/d' \
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< $tmp_file > $result_file
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fi
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# Filter h5diff debug output
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cp $result_file $tmp_file
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sed -e '/^h5diff debug: /d' \
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< $tmp_file > $result_file
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# clean up temporary files.
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rm -f $tmp_file
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}
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# Run a test and print PASS or *FAIL*. If a test fails then increment
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# the `nerrors' global variable and (if $verbose is set) display the
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# difference between the actual output and the expected output. The
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# expected output is given as the first argument to this function and
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# the actual output file is calculated by replacing the `.ddl' with
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# `.out'. The actual output is not removed if $HDF5_NOCLEANUP has a
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# non-zero value.
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#
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# Need eval before the RUNCMD command because some machines like
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# AIX, has RUNPARALLEL in the style as
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# MP_PROCS=3 MP_TASKS_PER_NODE=3 poe ./a.out
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# that throws the shell script off.
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#
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TOOLTEST() {
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expect="$srcdir/../testfiles/$1"
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actual="../testfiles/`basename $1 .txt`.out"
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actual_err="../testfiles/`basename $1 .txt`.err"
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actual_sav=${actual}-sav
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actual_err_sav=${actual_err}-sav
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shift
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if test -n "$pmode"; then
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RUNCMD=$RUNPARALLEL
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else
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RUNCMD=$RUNSERIAL
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fi
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# Run test.
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# Tflops interprets "$@" as "" when no parameter is given (e.g., the
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# case of missing file name). Changed it to use $@ till Tflops fixes it.
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TESTING $H5DIFF $@
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(
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echo "#############################"
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echo "Expected output for '$H5DIFF $@'"
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echo "#############################"
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cd $srcdir/../testfiles
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if [ "`uname -s`" = "TFLOPS O/S" ]; then
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eval $RUNCMD $H5DIFF_BIN $@
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else
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eval $RUNCMD $H5DIFF_BIN "$@"
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fi
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) >$actual 2>$actual_err
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# save actual and actual_err in case they are needed later.
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cp $actual $actual_sav
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STDOUT_FILTER $actual
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cp $actual_err $actual_err_sav
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STDERR_FILTER $actual_err
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cat $actual_err >> $actual
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if [ ! -f $expect ]; then
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# Create the expect file if it doesn't yet exist.
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echo " CREATED"
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cp $actual $expect
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elif $CMP $expect $actual; then
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echo " PASSED"
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elif test -z "$pmode"; then
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echo "*FAILED*"
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echo " Expected result ($expect) differs from actual result ($actual)"
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nerrors="`expr $nerrors + 1`"
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test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
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else
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# parallel mode output are often of different ordering from serial
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# output. If the sorted expected and actual files compare the same,
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# it is safe to assume the actual output match the expected file.
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expect_sorted=expect_sorted
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actual_sorted=actual_sorted
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sort $expect -o $expect_sorted
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sort $actual -o $actual_sorted
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if $CMP $expect_sorted $actual_sorted; then
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echo " PASSED"
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else
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echo "*FAILED*"
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nerrors="`expr $nerrors + 1`"
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if test yes = "$verbose"; then
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echo "====Expected result ($expect_sorted) differs from actual result ($actual_sorted)"
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$DIFF $expect_sorted $actual_sorted |sed 's/^/ /'
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echo "====The actual output ($actual_sav)"
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sed 's/^/ /' < $actual_sav
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echo "====The actual stderr ($actual_err_sav)"
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sed 's/^/ /' < $actual_err_sav
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echo "====End of actual stderr ($actual_err_sav)"
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echo ""
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fi
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fi
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fi
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# Clean up output file
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if test -z "$HDF5_NOCLEANUP"; then
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rm -f $actual $actual_err $actual_sav $actual_err_sav
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rm -f $actual_sorted $expect_sorted
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fi
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}
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# Print a "SKIP" message
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SKIP() {
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TESTING $H5DIFF $@
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echo " -SKIP-"
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}
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##############################################################################
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##############################################################################
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### T H E T E S T S ###
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##############################################################################
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##############################################################################
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# ############################################################################
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# # Common usage
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# ############################################################################
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# 1.0
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TOOLTEST h5diff_10.txt -h
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# 1.1 normal mode
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TOOLTEST h5diff_11.txt $FILE1 $FILE2
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# 1.2 normal mode with objects
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TOOLTEST h5diff_12.txt $FILE1 $FILE2 g1/dset1 g1/dset2
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# 1.3 report mode
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TOOLTEST h5diff_13.txt $FILE1 $FILE2 -r
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# 1.4 report mode with objects
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TOOLTEST h5diff_14.txt $FILE1 $FILE2 -r g1/dset1 g1/dset2
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# 1.5 with -d
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TOOLTEST h5diff_15.txt $FILE1 $FILE2 -r -d 5 g1/dset3 g1/dset4
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# 1.6 with -p (test divide by zero case)
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TOOLTEST h5diff_16.txt $FILE1 $FILE1 g1/dset9 g1/dset10 -p 0.01 -v
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# 1.7 verbose mode
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TOOLTEST h5diff_17.txt $FILE1 $FILE2 -v
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# 1.8 quiet mode
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TOOLTEST h5diff_18.txt $FILE1 $FILE2 -q
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# 1.9.1 with -p (int)
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TOOLTEST h5diff_191.txt $FILE1 $FILE1 -v -p 0.02 g1/dset5 g1/dset6
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# 1.9.2 with -p (unsigned long_long)
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TOOLTEST h5diff_192.txt $FILE1 $FILE1 -v -p 0.02 g1/dset7 g1/dset8
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# ##############################################################################
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# # not comparable types
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# ##############################################################################
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# 2.0
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TOOLTEST h5diff_20.txt $FILE3 $FILE3 -v dset g1
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# 2.1
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TOOLTEST h5diff_21.txt $FILE3 $FILE3 -v dset l1
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# 2.2
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TOOLTEST h5diff_22.txt $FILE3 $FILE3 -v dset t1
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# ##############################################################################
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# # compare groups, types, links (no differences and differences)
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# ##############################################################################
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# 2.3
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TOOLTEST h5diff_23.txt $FILE3 $FILE3 -v g1 g1
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# 2.4
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TOOLTEST h5diff_24.txt $FILE3 $FILE3 -v t1 t1
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# 2.5
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TOOLTEST h5diff_25.txt $FILE3 $FILE3 -v l1 l1
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# 2.6
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TOOLTEST h5diff_26.txt $FILE3 $FILE3 -v g1 g2
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# 2.7
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TOOLTEST h5diff_27.txt $FILE3 $FILE3 -v t1 t2
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# 2.8
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TOOLTEST h5diff_28.txt $FILE3 $FILE3 -v l1 l2
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# ##############################################################################
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# # Dataset datatypes
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# ##############################################################################
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# 5.0
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TOOLTEST h5diff_50.txt $FILE4 $FILE4 -v dset0a dset0b
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# 5.1
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TOOLTEST h5diff_51.txt $FILE4 $FILE4 -v dset1a dset1b
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# 5.2
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TOOLTEST h5diff_52.txt $FILE4 $FILE4 -v dset2a dset2b
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# 5.3
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TOOLTEST h5diff_53.txt $FILE4 $FILE4 -v dset3a dset4b
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# 5.4
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TOOLTEST h5diff_54.txt $FILE4 $FILE4 -v dset4a dset4b
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# 5.5
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TOOLTEST h5diff_55.txt $FILE4 $FILE4 -v dset5a dset5b
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# 5.6
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TOOLTEST h5diff_56.txt $FILE4 $FILE4 -v dset6a dset6b
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# 5.7
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TOOLTEST h5diff_57.txt $FILE4 $FILE4 -v dset7a dset7b
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# 5.8 (region reference)
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TOOLTEST h5diff_58.txt $FILE7 $FILE8 -v refreg
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# ##############################################################################
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# # Error messages
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# ##############################################################################
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# 6.0: Check if the command line number of arguments is less than 3
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TOOLTEST h5diff_600.txt $FILE1
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# 6.1: Check for invalid options
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TOOLTEST h5diff_601.txt $FILE1 $FILE2 -x
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# ##############################################################################
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# # -d
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# ##############################################################################
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# 6.2: no value
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TOOLTEST h5diff_602.txt $FILE1 $FILE2 -d g1/dset3 g1/dset4
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# 6.3: negative value
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TOOLTEST h5diff_603.txt $FILE1 $FILE2 -d -4 g1/dset3 g1/dset4
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# 6.4: zero
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TOOLTEST h5diff_604.txt $FILE1 $FILE2 -d 0 g1/dset3 g1/dset4
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# 6.5: non number
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TOOLTEST h5diff_605.txt $FILE1 $FILE2 -d u g1/dset3 g1/dset4
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# 6.6: hexadecimal
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TOOLTEST h5diff_606.txt $FILE1 $FILE2 -d 0x1 g1/dset3 g1/dset4
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# 6.7: string
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TOOLTEST h5diff_607.txt $FILE1 $FILE2 -d "1" g1/dset3 g1/dset4
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# 6.8: repeated option
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TOOLTEST h5diff_608.txt $FILE1 $FILE2 -d 1 -d 2 g1/dset3 g1/dset4
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# 6.9: number larger than biggest difference
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TOOLTEST h5diff_609.txt $FILE1 $FILE2 -d 200 g1/dset3 g1/dset4
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# 6.10: number smaller than smallest difference
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TOOLTEST h5diff_610.txt $FILE1 $FILE2 -d 1 g1/dset3 g1/dset4
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# ##############################################################################
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# # -p
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# ##############################################################################
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# 6.11: no value
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TOOLTEST h5diff_611.txt $FILE1 $FILE2 -r -p g1/dset3 g1/dset4
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# 6.12: negative value
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TOOLTEST h5diff_612.txt $FILE1 $FILE2 -p -4 g1/dset3 g1/dset4
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# 6.13: zero
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TOOLTEST h5diff_613.txt $FILE1 $FILE2 -p 0 g1/dset3 g1/dset4
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# 6.14: non number
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TOOLTEST h5diff_614.txt $FILE1 $FILE2 -p u g1/dset3 g1/dset4
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# 6.15: hexadecimal
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TOOLTEST h5diff_615.txt $FILE1 $FILE2 -p 0x1 g1/dset3 g1/dset4
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# 6.16: string
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TOOLTEST h5diff_616.txt $FILE1 $FILE2 -p "0.21" g1/dset3 g1/dset4
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# 6.17: repeated option
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TOOLTEST h5diff_617.txt $FILE1 $FILE2 -p 0.21 -p 0.22 g1/dset3 g1/dset4
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# 6.18: number larger than biggest difference
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TOOLTEST h5diff_618.txt $FILE1 $FILE2 -p 2 g1/dset3 g1/dset4
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# 6.19: number smaller than smallest difference
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TOOLTEST h5diff_619.txt $FILE1 $FILE2 -p 0.005 g1/dset3 g1/dset4
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# ##############################################################################
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# # -n
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# ##############################################################################
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# 6.20: no value
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TOOLTEST h5diff_620.txt $FILE1 $FILE2 -n g1/dset3 g1/dset4
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# 6.21: negative value
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TOOLTEST h5diff_621.txt $FILE1 $FILE2 -n -4 g1/dset3 g1/dset4
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# 6.22: zero
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TOOLTEST h5diff_622.txt $FILE1 $FILE2 -n 0 g1/dset3 g1/dset4
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# 6.23: non number
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TOOLTEST h5diff_623.txt $FILE1 $FILE2 -n u g1/dset3 g1/dset4
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# 6.24: hexadecimal
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TOOLTEST h5diff_624.txt $FILE1 $FILE2 -n 0x1 g1/dset3 g1/dset4
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# 6.25: string
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TOOLTEST h5diff_625.txt $FILE1 $FILE2 -n "2" g1/dset3 g1/dset4
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# 6.26: repeated option
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TOOLTEST h5diff_626.txt $FILE1 $FILE2 -n 2 -n 3 g1/dset3 g1/dset4
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# 6.27: number larger than biggest difference
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TOOLTEST h5diff_627.txt $FILE1 $FILE2 -n 200 g1/dset3 g1/dset4
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# 6.28: number smaller than smallest difference
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TOOLTEST h5diff_628.txt $FILE1 $FILE2 -n 1 g1/dset3 g1/dset4
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# ##############################################################################
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# 6.29 non valid files
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# ##############################################################################
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TOOLTEST h5diff_629.txt file1.h6 file2.h6
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# ##############################################################################
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|
# 7. attributes
|
|
# ##############################################################################
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|
|
|
TOOLTEST h5diff_70.txt $FILE5 $FILE6 -v
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|
|
|
# ##############################################################################
|
|
# 8. all dataset datatypes
|
|
# ##############################################################################
|
|
|
|
TOOLTEST h5diff_80.txt $FILE7 $FILE8 -v
|
|
|
|
# 9. compare a file with itself
|
|
|
|
TOOLTEST h5diff_90.txt $FILE1 $FILE1
|
|
|
|
# 10. read by hyperslab, print indexes
|
|
|
|
TOOLTEST h5diff_100.txt $FILE9 $FILE10 -v
|
|
|
|
# 11. floating point comparison
|
|
|
|
TOOLTEST h5diff_101.txt $FILE1 $FILE1 /g1/d1 g1/d2 -v
|
|
TOOLTEST h5diff_102.txt $FILE1 $FILE1 /g1/fp1 g1/fp2 -v
|
|
|
|
# ##############################################################################
|
|
# # END
|
|
# ##############################################################################
|
|
|
|
if test $nerrors -eq 0 ; then
|
|
echo "All $H5DIFF tests passed."
|
|
fi
|
|
|
|
exit $nerrors
|