mirror of
https://github.com/HDFGroup/hdf5.git
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89fbe00dec
* commit '54957d37f5aa73912763dbb6e308555e863c43f4': Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes. Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh. Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1 Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
458 lines
17 KiB
Java
458 lines
17 KiB
Java
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the COPYING file, which can be found at the root of the source code *
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* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
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* If you do not have access to either file, you may request a copy from *
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* help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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package test;
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import static org.junit.Assert.assertFalse;
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import static org.junit.Assert.assertTrue;
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import static org.junit.Assert.fail;
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import java.io.File;
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import hdf.hdf5lib.H5;
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import hdf.hdf5lib.HDF5Constants;
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import hdf.hdf5lib.exceptions.HDF5Exception;
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import hdf.hdf5lib.exceptions.HDF5LibraryException;
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import org.junit.After;
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import org.junit.Before;
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import org.junit.Rule;
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import org.junit.Test;
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import org.junit.rules.TestName;
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public class TestH5T {
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@Rule public TestName testname = new TestName();
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private static final String H5_FILE = "test.h5";
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long H5fid = -1;
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long H5strdid = -1;
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private final void _deleteFile(String filename) {
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File file = null;
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try {
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file = new File(filename);
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}
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catch (Throwable err) {}
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if (file.exists()) {
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try {file.delete();} catch (SecurityException e) {}
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}
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}
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@Before
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public void createH5file() throws NullPointerException, HDF5Exception {
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assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0);
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System.out.print(testname.getMethodName());
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H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
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HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
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assertTrue("H5.H5Fcreate", H5fid > 0);
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H5strdid = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
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assertTrue("H5.H5Tcopy", H5strdid > 0);
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H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
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}
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@After
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public void deleteH5file() throws HDF5LibraryException {
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if (H5strdid >= 0)
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try {H5.H5Tclose(H5strdid);} catch (Exception ex) {}
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if (H5fid > 0)
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try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
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_deleteFile(H5_FILE);
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System.out.println();
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}
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@Test(expected = HDF5LibraryException.class)
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public void testH5Tequal_type_error() throws Throwable {
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H5.H5Tequal(HDF5Constants.H5T_INTEGER, H5strdid);
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}
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@Test
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public void testH5Tget_class() {
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try {
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int result = H5.H5Tget_class(H5strdid);
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assertTrue("H5.H5Tget_class", result > 0);
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String class_name = H5.H5Tget_class_name(result);
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assertTrue("H5.H5Tget_class", class_name.compareTo("H5T_STRING")==0);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tget_class: " + err);
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}
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}
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@Test
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public void testH5Tget_size() {
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long dt_size = -1;
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try {
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dt_size = H5.H5Tget_size(H5strdid);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tget_size:H5.H5Tget_size " + err);
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}
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assertTrue("testH5Tget_size", dt_size > 0);
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}
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@Test
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public void testH5Tset_size() {
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long dt_size = 5;
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try {
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H5.H5Tset_size(H5strdid, dt_size);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tset_size:H5.H5Tset_size " + err);
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}
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try {
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dt_size = H5.H5Tget_size(H5strdid);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tget_size:H5.H5Tget_size " + err);
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}
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assertTrue("testH5Tget_size", dt_size == 5);
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}
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@Test
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public void testH5Tarray_create() {
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long filetype_id = -1;
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long[] adims = { 3, 5 };
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try {
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filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims);
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assertTrue("testH5Tarray_create", filetype_id >= 0);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tarray_create.H5Tarray_create " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Tget_array_ndims() {
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long filetype_id = -1;
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int ndims = 0;
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long[] adims = { 3, 5 };
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try {
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filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tarray_create.H5Tarray_create " + err);
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}
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assertTrue("testH5Tget_array_ndims:H5Tarray_create", filetype_id >= 0);
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try {
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ndims = H5.H5Tget_array_ndims(filetype_id);
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assertTrue("testH5Tget_array_ndims", ndims == 2);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tget_array_ndims.H5Tget_array_ndims " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Tget_array_dims() {
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long filetype_id = -1;
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int ndims = 0;
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long[] adims = { 3, 5 };
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long[] rdims = new long[2];
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try {
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filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tarray_create.H5Tarray_create " + err);
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}
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assertTrue("testH5Tget_array_dims:H5Tarray_create", filetype_id >= 0);
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try {
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ndims = H5.H5Tget_array_dims(filetype_id, rdims);
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assertTrue("testH5Tget_array_dims", ndims == 2);
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assertTrue("testH5Tget_array_dims", adims[0] == rdims[0]);
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assertTrue("testH5Tget_array_dims", adims[1] == rdims[1]);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tget_array_dims.H5Tget_array_dims " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Tenum_functions() {
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long filetype_id =-1;
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String enum_type ="Enum_type";
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byte[] enum_val = new byte[1];
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String enum_name = null;
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// Create a enumerate datatype
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try {
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filetype_id = H5.H5Tcreate(HDF5Constants.H5T_ENUM, (long)1);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tenum_functions:H5Tcreate " + err);
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}
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assertTrue("testH5Tenum_functions:H5Tcreate", filetype_id >= 0);
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try {
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enum_val[0]=10;
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H5.H5Tenum_insert(filetype_id, "RED", enum_val);
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enum_val[0]=11;
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H5.H5Tenum_insert(filetype_id, "GREEN", enum_val);
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enum_val[0]=12;
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H5.H5Tenum_insert(filetype_id, "BLUE", enum_val);
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enum_val[0]=13;
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H5.H5Tenum_insert(filetype_id, "ORANGE", enum_val);
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enum_val[0]=14;
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H5.H5Tenum_insert(filetype_id, "YELLOW", enum_val);
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// Query member number and member index by member name, for enumeration type.
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assertTrue("Can't get member number", H5.H5Tget_nmembers(filetype_id) == 5);
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assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3);
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// Commit enumeration datatype and close it */
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H5.H5Tcommit(H5fid, enum_type, filetype_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
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H5.H5Tclose(filetype_id);
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// Open the dataytpe for query
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filetype_id = H5.H5Topen(H5fid, enum_type, HDF5Constants.H5P_DEFAULT);
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assertTrue("testH5Tenum_functions:H5Tcreate", filetype_id >= 0);
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// Query member number and member index by member name, for enumeration type
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assertTrue("Can't get member number", H5.H5Tget_nmembers(filetype_id) == 5);
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assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3);
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// Query member value by member name, for enumeration type
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H5.H5Tenum_valueof (filetype_id, "ORANGE", enum_val);
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assertTrue("Incorrect value for enum member", enum_val[0]==13);
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// Query member value by member index, for enumeration type
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H5.H5Tget_member_value (filetype_id, 2, enum_val);
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assertTrue("Incorrect value for enum member", enum_val[0]==12);
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// Query member name by member value, for enumeration type
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enum_val[0] = 14;
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enum_name = H5.H5Tenum_nameof(filetype_id, enum_val, 16);
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assertTrue("Incorrect name for enum member", enum_name.compareTo("YELLOW")==0);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tenum_functions:query " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Tenum_create_functions() {
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long filetype_id = -1;
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byte[] enum_val = new byte[1];
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// Create a enumerate datatype
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try {
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filetype_id = H5.H5Tenum_create(HDF5Constants.H5T_NATIVE_INT);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tenum_create_functions:H5Tcreate " + err);
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}
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assertTrue("testH5Tenum_create_functions:H5Tcreate", filetype_id >= 0);
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try {
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enum_val[0]=10;
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H5.H5Tenum_insert(filetype_id, "RED", enum_val);
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enum_val[0]=11;
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H5.H5Tenum_insert(filetype_id, "GREEN", enum_val);
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enum_val[0]=12;
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H5.H5Tenum_insert(filetype_id, "BLUE", enum_val);
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enum_val[0]=13;
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H5.H5Tenum_insert(filetype_id, "ORANGE", enum_val);
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enum_val[0]=14;
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H5.H5Tenum_insert(filetype_id, "YELLOW", enum_val);
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// Query member number and member index by member name, for enumeration type.
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assertTrue("Can't get member number", H5.H5Tget_nmembers(filetype_id) == 5);
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assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tenum_create_functions:H5Tget_nmembers " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Topaque_functions() {
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long filetype_id = -1;
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String opaque_name = null;
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// Create a opaque datatype
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try {
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filetype_id = H5.H5Tcreate(HDF5Constants.H5T_OPAQUE, (long)4);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Topaque_functions:H5Tcreate " + err);
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}
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assertTrue("testH5Topaque_functions:H5Tcreate", filetype_id >= 0);
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try {
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H5.H5Tset_tag(filetype_id, "opaque type");
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opaque_name = H5.H5Tget_tag(filetype_id);
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assertTrue("Incorrect tag for opaque type", opaque_name.compareTo("opaque type")==0);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Topaque_functions:H5Tset_get_tag " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Tvlen_create() {
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long filetype_id = -1;
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try {
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filetype_id = H5.H5Tvlen_create(HDF5Constants.H5T_C_S1);
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assertTrue("testH5Tvlen_create", filetype_id >= 0);
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// Check if datatype is VL type
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int vlclass = H5.H5Tget_class(filetype_id);
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assertTrue("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN);
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assertFalse("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tvlen_create.H5Tvlen_create " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Tis_variable_str() {
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long filetype_id = -1;
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try {
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filetype_id = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
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assertTrue("testH5Tis_variable_str.H5Tcopy: ", filetype_id >= 0);
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// Convert to variable-length string
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H5.H5Tset_size(filetype_id, HDF5Constants.H5T_VARIABLE);
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// Check if datatype is VL string
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int vlclass = H5.H5Tget_class(filetype_id);
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assertTrue("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING);
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assertFalse("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN);
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assertTrue("testH5Tis_variable_str:H5Tis_variable_str", H5.H5Tis_variable_str(filetype_id));
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// Verify that the class detects as a string
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assertTrue("testH5Tis_variable_str:H5Tdetect_class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_STRING));
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tis_variable_str " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
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}
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}
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@Test
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public void testH5Tcompound_functions() {
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long filetype_id =-1;
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// Create a compound datatype
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try {
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filetype_id = H5.H5Tcreate(HDF5Constants.H5T_COMPOUND, (long)16);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tcompound_functions:H5Tcreate " + err);
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}
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assertTrue("testH5Tcompound_functions:H5Tcreate", filetype_id >= 0);
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try {
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H5.H5Tinsert(filetype_id, "Lon", 0, HDF5Constants.H5T_NATIVE_DOUBLE);
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H5.H5Tinsert(filetype_id, "Lat", 8, HDF5Constants.H5T_NATIVE_DOUBLE);
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// Query member number and member index by member name, for enumeration type.
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assertTrue("Can't get member number", H5.H5Tget_nmembers(filetype_id) == 2);
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assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "Lat") == 1);
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// We started to support this function for compound type in 1.8.6 release.
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int order = H5.H5Tget_order(filetype_id);
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assertFalse("Can't get order for compound type.", order == HDF5Constants.H5T_ORDER_ERROR);
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assertTrue("Wrong order for this type.", (order == HDF5Constants.H5T_ORDER_LE) || (order == HDF5Constants.H5T_ORDER_BE));
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// Make certain that the correct classes can be detected
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assertTrue("Can't get correct class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_COMPOUND));
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assertTrue("Can't get correct class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_FLOAT));
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// Make certain that an incorrect class is not detected
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assertFalse("Can get incorrect class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_TIME));
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// Query member name by member index
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String index_name = H5.H5Tget_member_name (filetype_id, 0);
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assertTrue("Incorrect name for member index", index_name.compareTo("Lon")==0);
|
|
|
|
// Query member offset by member no
|
|
long index_offset = H5.H5Tget_member_offset (filetype_id, 1);
|
|
assertTrue("Incorrect offset for member no", index_offset == 8);
|
|
|
|
// Query member type by member index
|
|
long index_type = H5.H5Tget_member_type (filetype_id, 0);
|
|
assertTrue("Incorrect type for member index", H5.H5Tequal(HDF5Constants.H5T_NATIVE_DOUBLE, index_type));
|
|
if (index_type >= 0)
|
|
try {H5.H5Tclose(index_type);} catch (Exception ex) {}
|
|
|
|
}
|
|
catch (Throwable err) {
|
|
err.printStackTrace();
|
|
fail("testH5Tcompound_functions:query " + err);
|
|
}
|
|
finally {
|
|
if (filetype_id >= 0)
|
|
try {H5.H5Tclose(filetype_id);} catch (Exception ex) {}
|
|
}
|
|
}
|
|
|
|
}
|