mirror of
https://github.com/HDFGroup/hdf5.git
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427ff7da28
Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
671 lines
19 KiB
C
671 lines
19 KiB
C
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the files COPYING and Copyright.html. COPYING can be found at the root *
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* of the source code distribution tree; Copyright.html can be found at the *
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* root level of an installed copy of the electronic HDF5 document set and *
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* is linked from the top-level documents page. It can also be found at *
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* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
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* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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/* ===========================================================================
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* Usage: zip_perf [-d] [-f] [-h] [-1 to -9] [files...]
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* -d : decompress
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* -f : compress with Z_FILTERED
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* -h : compress with Z_HUFFMAN_ONLY
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* -1 to -9 : compression level
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*/
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#include <stdio.h>
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#include <stdlib.h>
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#include <stdarg.h>
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#include <string.h>
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#include <errno.h>
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#include <fcntl.h>
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#include <math.h>
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#include <sys/time.h>
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#include <sys/uio.h>
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#include <sys/types.h>
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#include <sys/stat.h>
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#include <unistd.h>
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/* our header files */
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#include "hdf5.h"
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#include "h5tools_utils.h"
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#ifdef H5_HAVE_FILTER_DEFLATE
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#include <zlib.h>
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#if defined(MSDOS) || defined(OS2) || defined(WIN32)
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# include <fcntl.h>
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# include <io.h>
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# define SET_BINARY_MODE(file) setmode(fileno(file), O_BINARY)
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#else
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# define SET_BINARY_MODE(file) /* nothing */
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#endif /* MSDOS || OS2 || WIN32 */
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#ifdef VMS
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# define unlink delete
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# define GZ_SUFFIX "-gz"
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#endif /* VMS */
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#ifdef RISCOS
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# define unlink remove
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# define GZ_SUFFIX "-gz"
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# define fileno(file) file->__file
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#endif /* RISCOS */
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#if defined(__MWERKS__) && __dest_os != __be_os && __dest_os != __win32_os
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# include <unix.h> /* for fileno */
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#endif /* __MWERKS__ ... */
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#ifndef GZ_SUFFIX
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# define GZ_SUFFIX ".gz"
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#endif /* GZ_SUFFIX */
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#define SUFFIX_LEN (sizeof(GZ_SUFFIX) - 1)
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#define ONE_KB 1024
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#define ONE_MB (ONE_KB * ONE_KB)
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#define ONE_GB (ONE_MB * ONE_KB)
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#define MICROSECOND 1000000.0
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/* report 0.0 in case t is zero too */
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#define MB_PER_SEC(bytes,t) ((fabs(t)<0.0000000001) ? 0.0 : ((((double)bytes) / ONE_MB) / (t)))
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#ifndef TRUE
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#define TRUE 1
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#endif /* TRUE */
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#ifndef FALSE
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#define FALSE (!TRUE)
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#endif /* FALSE */
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#define BUFLEN (16 * ONE_KB)
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#define MAX_NAME_LEN ONE_KB
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/* internal variables */
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static const char *prog;
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static const char *option_prefix;
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static char *filename;
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static int compress_percent = 0;
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static int compress_level = Z_DEFAULT_COMPRESSION;
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static int output, random_test = FALSE;
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static int report_once_flag;
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static double compression_time;
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/* internal functions */
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static void error(const char *fmt, ...);
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static void compress_buffer(Bytef *dest, uLongf *destLen, const Bytef *source,
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uLong sourceLen);
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/* commandline options : long and short form */
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static const char *s_opts = "hB:b:c:p:rs:0123456789";
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static struct long_options l_opts[] = {
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{ "help", no_arg, 'h' },
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{ "compressability", require_arg, 'c' },
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{ "compressabilit", require_arg, 'c' },
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{ "compressabili", require_arg, 'c' },
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{ "compressabil", require_arg, 'c' },
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{ "compressabi", require_arg, 'c' },
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{ "compressab", require_arg, 'c' },
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{ "compressa", require_arg, 'c' },
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{ "compress", require_arg, 'c' },
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{ "compres", require_arg, 'c' },
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{ "compre", require_arg, 'c' },
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{ "compr", require_arg, 'c' },
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{ "comp", require_arg, 'c' },
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{ "com", require_arg, 'c' },
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{ "co", require_arg, 'c' },
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{ "file-size", require_arg, 's' },
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{ "file-siz", require_arg, 's' },
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{ "file-si", require_arg, 's' },
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{ "file-s", require_arg, 's' },
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{ "file", require_arg, 's' },
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{ "fil", require_arg, 's' },
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{ "fi", require_arg, 's' },
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{ "max-buffer-size", require_arg, 'B' },
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{ "max-buffer-siz", require_arg, 'B' },
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{ "max-buffer-si", require_arg, 'B' },
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{ "max-buffer-s", require_arg, 'B' },
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{ "max-buffer", require_arg, 'B' },
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{ "max-buffe", require_arg, 'B' },
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{ "max-buff", require_arg, 'B' },
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{ "max-buf", require_arg, 'B' },
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{ "max-bu", require_arg, 'B' },
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{ "max-b", require_arg, 'B' },
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{ "max", require_arg, 'B' },
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{ "min-buffer-size", require_arg, 'b' },
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{ "min-buffer-siz", require_arg, 'b' },
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{ "min-buffer-si", require_arg, 'b' },
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{ "min-buffer-s", require_arg, 'b' },
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{ "min-buffer", require_arg, 'b' },
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{ "min-buffe", require_arg, 'b' },
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{ "min-buff", require_arg, 'b' },
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{ "min-buf", require_arg, 'b' },
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{ "min-bu", require_arg, 'b' },
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{ "min-b", require_arg, 'b' },
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{ "min", require_arg, 'b' },
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{ "prefix", require_arg, 'p' },
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{ "prefi", require_arg, 'p' },
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{ "pref", require_arg, 'p' },
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{ "pre", require_arg, 'p' },
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{ "pr", require_arg, 'p' },
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{ "random-test", no_arg, 'r' },
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{ "random-tes", no_arg, 'r' },
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{ "random-te", no_arg, 'r' },
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{ "random-t", no_arg, 'r' },
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{ "random", no_arg, 'r' },
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{ "rando", no_arg, 'r' },
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{ "rand", no_arg, 'r' },
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{ "ran", no_arg, 'r' },
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{ "ra", no_arg, 'r' },
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{ NULL, 0, '\0' }
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};
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/*
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* Function: error
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* Purpose: Display error message and exit.
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* Programmer: Bill Wendling, 05. June 2002
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* Modifications:
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*/
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static void
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error(const char *fmt, ...)
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{
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va_list ap;
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va_start(ap, fmt);
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fprintf(stderr, "%s: error: ", prog);
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vfprintf(stderr, fmt, ap);
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fprintf(stderr, "\n");
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va_end(ap);
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exit(EXIT_FAILURE);
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}
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/*
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* Function: cleanup
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* Purpose: Cleanup the output file.
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* Returns: Nothing
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* Programmer: Bill Wendling, 06. June 2002
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* Modifications:
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*/
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static void
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cleanup(void)
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{
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if (!getenv("HDF5_NOCLEANUP"))
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unlink(filename);
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}
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static void
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write_file(Bytef *source, uLongf sourceLen)
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{
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Bytef *d_ptr, *dest;
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uLongf d_len, destLen;
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struct timeval timer_start, timer_stop;
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/* destination buffer needs to be at least 0.1% larger than sourceLen
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* plus 12 bytes */
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destLen = (uLongf)((double)sourceLen + ((double)sourceLen * 0.1)) + 12;
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dest = (Bytef *)malloc(destLen);
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if (!dest)
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error("out of memory");
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gettimeofday(&timer_start, NULL);
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compress_buffer(dest, &destLen, source, sourceLen);
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gettimeofday(&timer_stop, NULL);
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compression_time += ((double)timer_stop.tv_sec +
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((double)timer_stop.tv_usec) / MICROSECOND) -
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((double)timer_start.tv_sec +
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((double)timer_start.tv_usec) / MICROSECOND);
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if (report_once_flag) {
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printf("\tCompression Ratio: %g\n", ((double)destLen) / (double)sourceLen);
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report_once_flag = 0;
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}
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d_ptr = dest;
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d_len = destLen;
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/* loop to make sure we write everything out that we want to write */
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for (;;) {
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int rc = (int)write(output, d_ptr, (size_t)d_len);
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if (rc == -1)
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error(strerror(errno));
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if (rc == (int)d_len)
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break;
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d_len -= rc;
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d_ptr += rc;
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}
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free(dest);
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}
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/*
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* Function: compress_buffer
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* Purpose: Compress the buffer.
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* Returns: Z_OK - success
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* Z_MEM_ERROR - not enough memory
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* Z_BUF_ERROR - not enough room in the output buffer
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* Z_STREAM_ERROR - level parameter is invalid
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* Programmer: Bill Wendling, 05. June 2002
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* Modifications:
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*/
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static void
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compress_buffer(Bytef *dest, uLongf *destLen, const Bytef *source,
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uLong sourceLen)
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{
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int rc = compress2(dest, destLen, source, sourceLen, compress_level);
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if (rc != Z_OK) {
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/* compress2 failed - cleanup and tell why */
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cleanup();
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switch (rc) {
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case Z_MEM_ERROR:
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error("not enough memory");
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break;
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case Z_BUF_ERROR:
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error("not enough room in the output buffer");
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break;
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case Z_STREAM_ERROR:
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error("level parameter (%d) is invalid", compress_level);
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break;
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default:
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error("unknown compression error");
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break;
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}
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}
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}
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#ifdef LATER
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/*
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* Function: uncompress_buffer
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* Purpose: Uncompress the buffer.
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* Returns: Z_OK - success
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* Z_MEM_ERROR - not enough memory
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* Z_BUF_ERROR - not enough room in the output buffer
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* Z_DATA_ERROR - the input data was corrupted
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* Programmer: Bill Wendling, 05. June 2002
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* Modifications:
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*/
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static int
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uncompress_buffer(Bytef *dest, uLongf *destLen, const Bytef *source,
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uLong sourceLen)
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{
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int rc = uncompress(dest, destLen, source, sourceLen);
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return rc;
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}
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#endif /* LATER */
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/*
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* Function: get_unique_name
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* Purpose: Create a new file who's name doesn't conflict with
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* pre-existing files.
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* Returns: Nothing
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* Programmer: Bill Wendling, 06. June 2002
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* Modifications:
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*/
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static void
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get_unique_name(void)
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{
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const char *prefix = "/tmp", *tmpl = "/zip_perf.data";
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const char *env = getenv("HDF5_PREFIX");
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if (env)
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prefix = env;
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if (option_prefix)
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prefix = option_prefix;
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filename = calloc(1, strlen(prefix) + strlen(tmpl) + 1);
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if (!filename)
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error("out of memory");
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strcpy(filename, prefix);
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strcat(filename, tmpl);
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}
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/*
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* Function: usage
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* Purpose: Print a usage message and then exit.
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* Return: Nothing
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* Programmer: Bill Wendling, 05. June 2002
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* Modifications:
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*/
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static void
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usage(void)
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{
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printf("usage: %s [OPTIONS]\n", prog);
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printf(" OPTIONS\n");
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printf(" -h, --help Print this usage message and exit\n");
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printf(" -1...-9 Level of compression, from 1 to 9\n");
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printf(" -c P, --compressability=P Percentage of compressability of the random\n");
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printf(" data you want [default: 0]");
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printf(" -s S, --file-size=S Maximum size of uncompressed file [default: 64M]\n");
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printf(" -B S, --max-buffer_size=S Maximum size of buffer [default: 1M]\n");
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printf(" -b S, --min-buffer_size=S Minumum size of buffer [default: 128K]\n");
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printf(" -p D, --prefix=D The directory prefix to place the file\n");
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printf(" -r, --random-test Use random data to write to the file\n");
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printf(" [default: no]\n");
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printf("\n");
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printf(" D - a directory which exists\n");
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printf(" P - a number between 0 and 100\n");
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printf(" S - is a size specifier, an integer >=0 followed by a size indicator:\n");
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printf("\n");
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printf(" K - Kilobyte (%d)\n", ONE_KB);
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printf(" M - Megabyte (%d)\n", ONE_MB);
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printf(" G - Gigabyte (%d)\n", ONE_GB);
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printf("\n");
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printf(" Example: 37M = 37 Megabytes = %d bytes\n", 37 * ONE_MB);
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printf("\n");
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fflush(stdout);
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}
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/*
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* Function: parse_size_directive
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* Purpose: Parse the size directive passed on the commandline. The size
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* directive is an integer followed by a size indicator:
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*
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* K, k - Kilobyte
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* M, m - Megabyte
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*
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* Return: The size as a size_t because this is related to buffer size.
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* If an unknown size indicator is used, then the program will
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* exit with EXIT_FAILURE as the return value.
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* Programmer: Bill Wendling, 05. June 2002
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* Modifications:
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*/
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static unsigned long
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parse_size_directive(const char *size)
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{
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unsigned long s;
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char *endptr;
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s = strtoul(size, &endptr, 10);
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if (endptr && *endptr) {
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while (*endptr != '\0' && (*endptr == ' ' || *endptr == '\t'))
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++endptr;
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switch (*endptr) {
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case 'K':
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case 'k':
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s *= ONE_KB;
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break;
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case 'M':
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case 'm':
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s *= ONE_MB;
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break;
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case 'G':
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case 'g':
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s *= ONE_GB;
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break;
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default:
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error("illegal size specifier '%c'", *endptr);
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break;
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}
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}
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return s;
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}
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static void
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fill_with_random_data(Bytef *src, uLongf src_len)
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{
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register unsigned u;
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struct stat stat_buf;
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if (stat("/dev/urandom", &stat_buf) == 0) {
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uLongf len = src_len;
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Bytef *buf = src;
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int fd = open("/dev/urandom", O_RDONLY);
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printf("Using /dev/urandom for random data\n");
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if (fd < 0)
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error(strerror(errno));
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for (;;) {
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ssize_t rc = read(fd, buf, src_len);
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if (rc == -1)
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error(strerror(errno));
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if (rc == (ssize_t)len)
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break;
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buf += rc;
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len -= rc;
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}
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} else {
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printf("Using random() for random data\n");
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for (u = 0; u < src_len; ++u)
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src[u] = (Bytef)(0xff & random());
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}
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if (compress_percent) {
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unsigned long s = src_len * compress_percent / 100;
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memset(src, '\0', s);
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}
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}
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static void
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do_write_test(unsigned long file_size, unsigned long min_buf_size,
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unsigned long max_buf_size)
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{
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uLongf src_len, total_len;
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struct timeval timer_start, timer_stop;
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double total_time;
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Bytef *src;
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for (src_len = min_buf_size; src_len <= max_buf_size; src_len <<= 1) {
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register unsigned long i, iters;
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iters = file_size / src_len;
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src = (Bytef *)calloc(1, sizeof(Bytef) * src_len);
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if (!src) {
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cleanup();
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error("out of memory");
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}
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compression_time = 0.0;
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if (random_test)
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fill_with_random_data(src, src_len);
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printf("Buffer size == ");
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if (src_len >= ONE_KB && (src_len % ONE_KB) == 0) {
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if (src_len >= ONE_MB && (src_len % ONE_MB) == 0) {
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|
printf("%ldMB", src_len / ONE_MB);
|
|
} else {
|
|
printf("%ldKB", src_len / ONE_KB);
|
|
}
|
|
} else {
|
|
printf("%ld", src_len);
|
|
}
|
|
|
|
printf("\n");
|
|
|
|
/* do uncompressed data write */
|
|
gettimeofday(&timer_start, NULL);
|
|
output = open(filename, O_RDWR | O_CREAT, S_IRWXU);
|
|
|
|
if (output == -1)
|
|
error(strerror(errno));
|
|
|
|
for (i = 0; i <= iters; ++i) {
|
|
Bytef *s_ptr = src;
|
|
uLong s_len = src_len;
|
|
|
|
/* loop to make sure we write everything out that we want to write */
|
|
for (;;) {
|
|
ssize_t rc = write(output, s_ptr, s_len);
|
|
|
|
if (rc == -1)
|
|
error(strerror(errno));
|
|
|
|
if (rc == (ssize_t)s_len)
|
|
break;
|
|
|
|
s_len -= rc;
|
|
s_ptr += rc;
|
|
}
|
|
}
|
|
|
|
close(output);
|
|
gettimeofday(&timer_stop, NULL);
|
|
|
|
total_time = ((double)timer_stop.tv_sec +
|
|
((double)timer_stop.tv_usec) / MICROSECOND) -
|
|
((double)timer_start.tv_sec +
|
|
((double)timer_start.tv_usec) / MICROSECOND);
|
|
|
|
printf("\tUncompressed Write Time: %.2fs\n", total_time);
|
|
printf("\tUncompressed Write Throughput: %.2fMB/s\n",
|
|
MB_PER_SEC(file_size, total_time));
|
|
|
|
unlink(filename);
|
|
|
|
/* do compressed data write */
|
|
output = open(filename, O_RDWR | O_CREAT);
|
|
|
|
if (output == -1)
|
|
error(strerror(errno));
|
|
|
|
report_once_flag = 1;
|
|
gettimeofday(&timer_start, NULL);
|
|
|
|
for (total_len = 0; total_len < file_size; total_len += src_len)
|
|
write_file(src, src_len);
|
|
|
|
close(output);
|
|
gettimeofday(&timer_stop, NULL);
|
|
|
|
total_time = ((double)timer_stop.tv_sec +
|
|
((double)timer_stop.tv_usec) / MICROSECOND) -
|
|
((double)timer_start.tv_sec +
|
|
((double)timer_start.tv_usec) / MICROSECOND);
|
|
|
|
printf("\tCompressed Write Time: %.2fs\n", total_time);
|
|
printf("\tCompressed Write Throughput: %.2fMB/s\n",
|
|
MB_PER_SEC(file_size, total_time));
|
|
printf("\tCompression Time: %gs\n", compression_time);
|
|
|
|
unlink(filename);
|
|
free(src);
|
|
}
|
|
}
|
|
|
|
/*
|
|
* Function: main
|
|
* Purpose: Run the program
|
|
* Return: EXIT_SUCCESS or EXIT_FAILURE
|
|
* Programmer: Bill Wendling, 05. June 2002
|
|
* Modifications:
|
|
*/
|
|
int
|
|
main(int argc, char **argv)
|
|
{
|
|
unsigned long min_buf_size = 128 * ONE_KB, max_buf_size = ONE_MB;
|
|
unsigned long file_size = 64 * ONE_MB;
|
|
int opt;
|
|
|
|
prog = argv[0];
|
|
|
|
while ((opt = get_option(argc, (const char **)argv, s_opts, l_opts)) > 0) {
|
|
switch ((char)opt) {
|
|
case '0': case '1': case '2':
|
|
case '3': case '4': case '5':
|
|
case '6': case '7': case '8':
|
|
case '9':
|
|
compress_level = opt - '0';
|
|
break;
|
|
case 'B':
|
|
max_buf_size = parse_size_directive(opt_arg);
|
|
break;
|
|
case 'b':
|
|
min_buf_size = parse_size_directive(opt_arg);
|
|
break;
|
|
case 'c':
|
|
compress_percent = (int)strtol(opt_arg, NULL, 10);
|
|
|
|
if (compress_percent < 0)
|
|
compress_percent = 0;
|
|
else if (compress_percent > 100)
|
|
compress_percent = 100;
|
|
|
|
break;
|
|
case 'p':
|
|
option_prefix = opt_arg;
|
|
break;
|
|
case 'r':
|
|
random_test = TRUE;
|
|
break;
|
|
case 's':
|
|
file_size = parse_size_directive(opt_arg);
|
|
break;
|
|
case '?':
|
|
usage();
|
|
exit(EXIT_FAILURE);
|
|
break;
|
|
case 'h':
|
|
default:
|
|
usage();
|
|
exit(EXIT_SUCCESS);
|
|
break;
|
|
}
|
|
}
|
|
|
|
if (min_buf_size > max_buf_size)
|
|
error("minmum buffer size (%d) exceeds maximum buffer size (%d)",
|
|
min_buf_size, max_buf_size);
|
|
|
|
printf("Filesize: %ld\n", file_size);
|
|
|
|
if (compress_level == Z_DEFAULT_COMPRESSION)
|
|
printf("Compression Level: 6\n");
|
|
else
|
|
printf("Compression Level: %d\n", compress_level);
|
|
|
|
get_unique_name();
|
|
do_write_test(file_size, min_buf_size, max_buf_size);
|
|
cleanup();
|
|
return EXIT_SUCCESS;
|
|
}
|
|
|
|
#else
|
|
|
|
/*
|
|
* Function: main
|
|
* Purpose: Dummy main() function for if HDF5 was configured without
|
|
* zlib stuff.
|
|
* Return: EXIT_SUCCESS
|
|
* Programmer: Bill Wendling, 10. June 2002
|
|
* Modifications:
|
|
*/
|
|
int
|
|
main(void)
|
|
{
|
|
printf("No compression IO performance because zlib was not configured\n");
|
|
return EXIT_SUCCESS;
|
|
}
|
|
|
|
#endif /* !H5_HAVE_FILTER_DEFLATE */
|