mirror of
https://github.com/HDFGroup/hdf5.git
synced 2024-12-03 02:32:04 +08:00
427ff7da28
Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
854 lines
23 KiB
C
854 lines
23 KiB
C
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
|
||
* Copyright by the Board of Trustees of the University of Illinois. *
|
||
* All rights reserved. *
|
||
* *
|
||
* This file is part of HDF5. The full HDF5 copyright notice, including *
|
||
* terms governing use, modification, and redistribution, is contained in *
|
||
* the files COPYING and Copyright.html. COPYING can be found at the root *
|
||
* of the source code distribution tree; Copyright.html can be found at the *
|
||
* root level of an installed copy of the electronic HDF5 document set and *
|
||
* is linked from the top-level documents page. It can also be found at *
|
||
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
|
||
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
|
||
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
|
||
|
||
/*
|
||
* Programmer: Raymond Lu <slu@ncsa.uiuc.edu>
|
||
* Friday, Oct 3, 2004
|
||
*
|
||
* Purpose: Tests performance of metadata
|
||
*/
|
||
|
||
#include "h5test.h"
|
||
#include <sys/time.h>
|
||
|
||
#ifdef H5_HAVE_PARALLEL
|
||
#define MAINPROCESS (!mpi_rank) /* define process 0 as main process */
|
||
#endif /*H5_HAVE_PARALLEL*/
|
||
|
||
/* File_Access_type bits */
|
||
#define FACC_DEFAULT 0x0 /* serial as default */
|
||
#define FACC_MPIO 0x1 /* MPIO */
|
||
#define FACC_MPIPOSIX 0x8 /* MPIPOSIX */
|
||
|
||
/* Which test to run */
|
||
int RUN_TEST = 0x0; /* all tests as default */
|
||
int TEST_1 = 0x1; /* Test 1 */
|
||
int TEST_2 = 0x2; /* Test 2 */
|
||
int TEST_3 = 0x4; /* Test 3 */
|
||
|
||
|
||
const char *FILENAME[] = {
|
||
"meta_perf_1",
|
||
"meta_perf_2",
|
||
"meta_perf_3",
|
||
NULL
|
||
};
|
||
|
||
/* Default values for performance. Can be changed through command line options */
|
||
int NUM_DSETS = 16;
|
||
int NUM_ATTRS = 8;
|
||
int BATCH_ATTRS = 2;
|
||
hbool_t flush_dset = FALSE;
|
||
hbool_t flush_attr = FALSE;
|
||
int nerrors = 0; /* errors count */
|
||
hid_t fapl;
|
||
|
||
/* Data space IDs */
|
||
hid_t space;
|
||
hid_t small_space;
|
||
|
||
/* Performance data */
|
||
typedef struct p_time {
|
||
double total;
|
||
double avg;
|
||
double max;
|
||
double min;
|
||
double start;
|
||
char func[32];
|
||
} p_time;
|
||
|
||
/*Test file access type for parallel. MPIO as default */
|
||
int facc_type = FACC_DEFAULT;
|
||
|
||
double retrieve_time(void);
|
||
void perf(p_time *perf_t, double start_t, double end_t);
|
||
void print_perf(p_time, p_time, p_time);
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: parse_options
|
||
*
|
||
Purpose: Parse command line options
|
||
*
|
||
* Programmer: Raymond Lu
|
||
* Friday, Oct 3, 2003
|
||
*
|
||
* Modifications:
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
static int
|
||
parse_options(int argc, char **argv)
|
||
{
|
||
int t;
|
||
|
||
/* Use default values */
|
||
if(argc==1)
|
||
return(0);
|
||
|
||
while (--argc){
|
||
if (**(++argv) != '-'){
|
||
break;
|
||
}else{
|
||
switch(*(*argv+1)){
|
||
case 'h': /* Help page */
|
||
return(1);
|
||
|
||
case 'd': /* Number of datasets */
|
||
NUM_DSETS = atoi((*argv+1)+1);
|
||
if (NUM_DSETS < 0){
|
||
nerrors++;
|
||
return(1);
|
||
}
|
||
break;
|
||
|
||
case 'a': /* Number of attributes per dataset */
|
||
NUM_ATTRS = atoi((*argv+1)+1);
|
||
if (NUM_ATTRS < 0){
|
||
nerrors++;
|
||
return(1);
|
||
}
|
||
break;
|
||
|
||
case 'n': /* Number of attributes to be created in batch */
|
||
BATCH_ATTRS = atoi((*argv+1)+1);
|
||
if (BATCH_ATTRS < 0){
|
||
nerrors++;
|
||
return(1);
|
||
}
|
||
break;
|
||
|
||
case 'p': /* Use the MPI-POSIX driver access */
|
||
facc_type = FACC_MPIPOSIX;
|
||
break;
|
||
|
||
case 'm': /* Use the MPI-POSIX driver access */
|
||
facc_type = FACC_MPIO;
|
||
break;
|
||
|
||
case 'f': /* Call H5Fflush for each dataset or attribute */
|
||
if(!strcmp("a", (*argv+2)))
|
||
flush_attr = TRUE;
|
||
else if(!strcmp("d", (*argv+2)))
|
||
flush_dset = TRUE;
|
||
else {
|
||
nerrors++;
|
||
return(1);
|
||
}
|
||
break;
|
||
|
||
case 't': /* Which test to run */
|
||
t = atoi((*argv+1)+1);
|
||
if (t < 1 || t > 3){
|
||
nerrors++;
|
||
return(1);
|
||
}
|
||
if(t == 1)
|
||
RUN_TEST |= TEST_1;
|
||
else if(t == 2)
|
||
RUN_TEST |= TEST_2;
|
||
else
|
||
RUN_TEST |= TEST_3;
|
||
|
||
break;
|
||
|
||
default: nerrors++;
|
||
return(1);
|
||
}
|
||
}
|
||
} /*while*/
|
||
|
||
/* Check valid values */
|
||
#ifndef H5_HAVE_PARALLEL
|
||
if(facc_type == FACC_MPIO || facc_type == FACC_MPIPOSIX)
|
||
{
|
||
nerrors++;
|
||
return(1);
|
||
}
|
||
#endif /*H5_HAVE_PARALLEL*/
|
||
|
||
if(NUM_ATTRS && !BATCH_ATTRS)
|
||
NUM_ATTRS = 0;
|
||
|
||
if(!NUM_ATTRS && BATCH_ATTRS)
|
||
BATCH_ATTRS = 0;
|
||
|
||
if(!NUM_DSETS) {
|
||
nerrors++;
|
||
return(1);
|
||
}
|
||
|
||
if(NUM_ATTRS && BATCH_ATTRS) {
|
||
if(BATCH_ATTRS > NUM_ATTRS || NUM_ATTRS % BATCH_ATTRS) {
|
||
nerrors++;
|
||
return(1);
|
||
}
|
||
}
|
||
|
||
return(0);
|
||
}
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: usage
|
||
*
|
||
Purpose: Prints help page
|
||
*
|
||
* Programmer: Raymond Lu
|
||
* Friday, Oct 3, 2003
|
||
*
|
||
* Modifications:
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
static void
|
||
usage(void)
|
||
{
|
||
printf("Usage: perf_meta [-h] [-m] [-p] [-d<num_datasets>]"
|
||
"[-a<num_attributes>]\n"
|
||
"\t[-n<batch_attributes>] [-f<option>] [-t<test>]\n");
|
||
printf("\t-h"
|
||
"\t\t\thelp page.\n");
|
||
printf("\t-m"
|
||
"\t\t\tset MPIO as the file driver when parallel HDF5\n"
|
||
"\t\t\t\tis enabled. Either -m or -p has be to \n"
|
||
"\t\t\t\tspecified when running parallel program.\n");
|
||
printf("\t-p"
|
||
"\t\t\tset MPI POSIX as the file driver when parallel \n"
|
||
"\t\t\t\tHDF5 is enabled. Either -m or -p has be to \n"
|
||
"\t\t\t\tspecified when running parallel program.\n");
|
||
printf("\t-d<num_datasets>"
|
||
"\tset number of datasets for meta data \n"
|
||
"\t\t\t\tperformance test\n");
|
||
printf("\t-a<num_attributes>"
|
||
"\tset number of attributes per dataset for meta \n"
|
||
"\t\t\t\tdata performance test.\n");
|
||
printf("\t-n<batch_attributes>"
|
||
"\tset batch number of attributes for dataset \n"
|
||
"\t\t\t\tfor meta data performance test.\n");
|
||
printf("\t-f<option>"
|
||
"\t\tflush data to disk after closing a dataset \n"
|
||
"\t\t\t\tor attribute. Valid options are \"d\" for \n"
|
||
"\t\t\t\tdataset, \"a\" for attribute. Disabled is \n"
|
||
"\t\t\t\tthe default.\n");
|
||
printf("\t-t<tests>"
|
||
"\t\trun specific test. Give only one number each \n"
|
||
"\t\t\t\ttime. i.e. \"-t1 -t3\" will run test 1 and 3. \n"
|
||
"\t\t\t\tDefault is all three tests. The 3 tests are: \n\n"
|
||
"\t\t\t\t1. Create <num_attributes> attributes for each \n"
|
||
"\t\t\t\t of <num_datasets> existing datasets.\n"
|
||
"\t\t\t\t2. Create <num_attributes> attributes for each \n"
|
||
"\t\t\t\t of <num_datasets> new datasets.\n"
|
||
"\t\t\t\t3. Create <batch_attributes> attributes for \n"
|
||
"\t\t\t\t each of <num_dataset> new datasets for \n"
|
||
"\t\t\t\t <num_attributes>/<batch_attributes> times.\n");
|
||
}
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: create_dspace
|
||
*
|
||
* Purpose: Attempts to create data space.
|
||
*
|
||
* Return: Success: 0
|
||
*
|
||
* Failure: -1
|
||
*
|
||
* Programmer: Raymond Lu
|
||
* Friday, Oct 3, 2003
|
||
*
|
||
* Modifications:
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
static herr_t
|
||
create_dspace(void)
|
||
{
|
||
hsize_t dims[2];
|
||
hsize_t small_dims[2];
|
||
|
||
/* Create the data space */
|
||
dims[0] = 256;
|
||
dims[1] = 512;
|
||
if((space = H5Screate_simple(2, dims, NULL)) < 0)
|
||
goto error;
|
||
|
||
/* Create a small data space for attributes */
|
||
small_dims[0] = 16;
|
||
small_dims[1] = 8;
|
||
if((small_space = H5Screate_simple(2, small_dims, NULL)) < 0)
|
||
goto error;
|
||
|
||
return 0;
|
||
|
||
error:
|
||
return -1;
|
||
}
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: create_dsets
|
||
*
|
||
* Purpose: Attempts to create some datasets.
|
||
*
|
||
* Return: Success: 0
|
||
*
|
||
* Failure: -1
|
||
*
|
||
* Programmer: Raymond Lu
|
||
* Friday, Oct 3, 2003
|
||
*
|
||
* Modifications:
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
static herr_t
|
||
create_dsets(hid_t file)
|
||
{
|
||
hid_t dataset;
|
||
char dset_name[32];
|
||
int i;
|
||
|
||
/*
|
||
* Create a dataset using the default dataset creation properties.
|
||
*/
|
||
for(i=0; i<NUM_DSETS; i++) {
|
||
sprintf(dset_name, "dataset %d", i);
|
||
if((dataset = H5Dcreate(file, dset_name, H5T_NATIVE_DOUBLE,
|
||
space, H5P_DEFAULT)) < 0)
|
||
goto error;
|
||
|
||
if (H5Dclose(dataset) < 0) goto error;
|
||
}
|
||
|
||
return 0;
|
||
|
||
error:
|
||
return -1;
|
||
|
||
}
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: create_attrs_1
|
||
*
|
||
* Purpose: Attempts to create all attributes for each existing dataset.
|
||
*
|
||
* Return: Success: 0
|
||
*
|
||
* Failure: -1
|
||
*
|
||
* Programmer: Raymond Lu
|
||
* Friday, Oct 3, 2003
|
||
*
|
||
* Modifications:
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
static herr_t
|
||
create_attrs_1(void)
|
||
{
|
||
hid_t file, dataset, attr;
|
||
char filename[128];
|
||
char dset_name[64];
|
||
char attr_name[128];
|
||
int i, j;
|
||
p_time attr_t = {0, 0, 0, 1000000, 0, ""};
|
||
p_time open_t = {0, 0, 0, 1000000, 0, "H5Dopen"};
|
||
p_time close_t = {0, 0, 0, 1000000, 0, ""};
|
||
|
||
#ifdef H5_HAVE_PARALLEL
|
||
/* need the rank for printing data */
|
||
int mpi_rank;
|
||
if(facc_type == FACC_MPIO || facc_type == FACC_MPIPOSIX)
|
||
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
|
||
#endif /*H5_HAVE_PARALLEL*/
|
||
|
||
h5_fixname(FILENAME[0], fapl, filename, sizeof filename);
|
||
|
||
if ((file=H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT,
|
||
fapl))<0)
|
||
goto error;
|
||
|
||
if(create_dsets(file)<0)
|
||
goto error;
|
||
|
||
/*
|
||
* Create all(user specifies the number) attributes for each dataset
|
||
*/
|
||
for(i=0; i<NUM_DSETS; i++) {
|
||
sprintf(dset_name, "dataset %d", i);
|
||
open_t.start = retrieve_time();
|
||
if((dataset=H5Dopen(file, dset_name))<0)
|
||
goto error;
|
||
perf(&open_t, open_t.start, retrieve_time());
|
||
|
||
for(j=0; j<NUM_ATTRS; j++) {
|
||
sprintf(attr_name, "all attrs for each dset %d", j);
|
||
attr_t.start = retrieve_time();
|
||
if((attr = H5Acreate(dataset, attr_name, H5T_NATIVE_DOUBLE,
|
||
small_space, H5P_DEFAULT)) < 0)
|
||
goto error;
|
||
if (H5Aclose(attr) < 0) goto error;
|
||
perf(&attr_t, attr_t.start, retrieve_time());
|
||
if(flush_attr && H5Fflush(file, H5F_SCOPE_LOCAL)<0) goto error;
|
||
}
|
||
|
||
close_t.start = retrieve_time();
|
||
if(H5Dclose(dataset)<0) goto error;
|
||
perf(&close_t, close_t.start, retrieve_time());
|
||
if(flush_dset && H5Fflush(file, H5F_SCOPE_LOCAL) < 0) goto error;
|
||
}
|
||
|
||
if(facc_type == FACC_MPIO || facc_type == FACC_MPIPOSIX) {
|
||
#ifdef H5_HAVE_PARALLEL
|
||
MPI_Barrier(MPI_COMM_WORLD);
|
||
#endif /*H5_HAVE_PARALLEL*/
|
||
}
|
||
|
||
#ifdef H5_HAVE_PARALLEL
|
||
if (facc_type == FACC_DEFAULT || (facc_type != FACC_DEFAULT && MAINPROCESS)) /* only process 0 reports */
|
||
#endif /*H5_HAVE_PARALLEL*/
|
||
{
|
||
/* Calculate the average time */
|
||
open_t.avg = open_t.total / NUM_DSETS;
|
||
close_t.avg = close_t.total / NUM_DSETS;
|
||
if(NUM_ATTRS)
|
||
attr_t.avg = attr_t.total / (NUM_ATTRS*NUM_DSETS);
|
||
|
||
/* Print out the performance result */
|
||
fprintf(stderr, "1. Create %d attributes for each of %d existing datasets\n",
|
||
NUM_ATTRS, NUM_DSETS);
|
||
print_perf(open_t, close_t, attr_t);
|
||
}
|
||
|
||
if (H5Fclose(file)<0) goto error;
|
||
|
||
return 0;
|
||
|
||
error:
|
||
return -1;
|
||
}
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: create_attrs_2
|
||
*
|
||
* Purpose: Attempts to create all attributes for each new dataset.
|
||
*
|
||
* Return: Success: 0
|
||
*
|
||
* Failure: -1
|
||
*
|
||
* Programmer: Raymond Lu
|
||
* Friday, Oct 3, 2003
|
||
*
|
||
* Modifications:
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
static herr_t
|
||
create_attrs_2(void)
|
||
{
|
||
hid_t file, dataset, attr;
|
||
char filename[128];
|
||
char dset_name[64];
|
||
char attr_name[128];
|
||
int i, j;
|
||
p_time attr_t = {0, 0, 0, 1000000, 0, ""};
|
||
p_time create_t = {0, 0, 0, 1000000, 0, "H5Dcreate"};
|
||
p_time close_t = {0, 0, 0, 1000000, 0, ""};
|
||
|
||
#ifdef H5_HAVE_PARALLEL
|
||
/* need the rank for printing data */
|
||
int mpi_rank;
|
||
if(facc_type == FACC_MPIO || facc_type == FACC_MPIPOSIX)
|
||
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
|
||
#endif /*H5_HAVE_PARALLEL*/
|
||
|
||
h5_fixname(FILENAME[1], fapl, filename, sizeof filename);
|
||
|
||
if ((file=H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl))<0)
|
||
goto error;
|
||
|
||
/*
|
||
* Create all(user specifies the number) attributes for each new dataset
|
||
*/
|
||
for(i=0; i<NUM_DSETS; i++) {
|
||
sprintf(dset_name, "dataset %d", i);
|
||
create_t.start = retrieve_time();
|
||
if((dataset = H5Dcreate(file, dset_name, H5T_NATIVE_DOUBLE,
|
||
space, H5P_DEFAULT)) < 0)
|
||
goto error;
|
||
perf(&create_t, create_t.start, retrieve_time());
|
||
|
||
for(j=0; j<NUM_ATTRS; j++) {
|
||
sprintf(attr_name, "all attrs for each dset %d", j);
|
||
attr_t.start = retrieve_time();
|
||
if((attr = H5Acreate(dataset, attr_name, H5T_NATIVE_DOUBLE,
|
||
small_space, H5P_DEFAULT)) < 0)
|
||
goto error;
|
||
if (H5Aclose(attr) < 0) goto error;
|
||
perf(&attr_t, attr_t.start, retrieve_time());
|
||
if(flush_attr && H5Fflush(file, H5F_SCOPE_LOCAL) < 0) goto error;
|
||
}
|
||
|
||
close_t.start = retrieve_time();
|
||
if(H5Dclose(dataset)<0) goto error;
|
||
perf(&close_t, close_t.start, retrieve_time());
|
||
if(flush_dset && H5Fflush(file, H5F_SCOPE_LOCAL) < 0) goto error;
|
||
}
|
||
|
||
if(facc_type == FACC_MPIO || facc_type == FACC_MPIPOSIX) {
|
||
#ifdef H5_HAVE_PARALLEL
|
||
MPI_Barrier(MPI_COMM_WORLD);
|
||
#endif /*H5_HAVE_PARALLEL*/
|
||
}
|
||
|
||
#ifdef H5_HAVE_PARALLEL
|
||
/* only process 0 reports if parallel */
|
||
if (facc_type == FACC_DEFAULT || (facc_type != FACC_DEFAULT && MAINPROCESS))
|
||
#endif /*H5_HAVE_PARALLEL*/
|
||
{
|
||
/* Calculate the average time */
|
||
create_t.avg = create_t.total / NUM_DSETS;
|
||
close_t.avg = close_t.total / NUM_DSETS;
|
||
if(NUM_ATTRS)
|
||
attr_t.avg = attr_t.total / (NUM_ATTRS*NUM_DSETS);
|
||
|
||
/* Print out the performance result */
|
||
fprintf(stderr, "2. Create %d attributes for each of %d new datasets\n",
|
||
NUM_ATTRS, NUM_DSETS);
|
||
print_perf(create_t, close_t, attr_t);
|
||
}
|
||
|
||
if (H5Fclose(file)<0) goto error;
|
||
|
||
return 0;
|
||
|
||
error:
|
||
return -1;
|
||
}
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: create_attrs_3
|
||
*
|
||
* Purpose: Attempts to create some attributes for each dataset in a
|
||
* loop.
|
||
*
|
||
* Return: Success: 0
|
||
*
|
||
* Failure: -1
|
||
*
|
||
* Programmer: Raymond Lu
|
||
* Friday, Oct 3, 2003
|
||
*
|
||
* Modifications:
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
static herr_t
|
||
create_attrs_3(void)
|
||
{
|
||
hid_t file, dataset, attr;
|
||
char filename[128];
|
||
char dset_name[64];
|
||
char attr_name[128];
|
||
int loop_num;
|
||
int i, j, k;
|
||
p_time attr_t = {0, 0, 0, 1000000, 0, ""};
|
||
p_time open_t = {0, 0, 0, 1000000, 0, "H5Dopen"};
|
||
p_time close_t = {0, 0, 0, 1000000, 0, ""};
|
||
|
||
#ifdef H5_HAVE_PARALLEL
|
||
/* need the rank for printing data */
|
||
int mpi_rank;
|
||
if(facc_type == FACC_MPIO || facc_type == FACC_MPIPOSIX)
|
||
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
|
||
#endif /*H5_HAVE_PARALLEL*/
|
||
|
||
h5_fixname(FILENAME[2], fapl, filename, sizeof filename);
|
||
|
||
if ((file=H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT,
|
||
fapl))<0)
|
||
goto error;
|
||
|
||
if(create_dsets(file)<0)
|
||
goto error;
|
||
|
||
/*
|
||
* Create some(user specifies the number) attributes for each dataset
|
||
* in a loop
|
||
*/
|
||
loop_num = NUM_ATTRS/BATCH_ATTRS;
|
||
|
||
for(i=0; i<loop_num; i++) {
|
||
for(j=0; j<NUM_DSETS; j++) {
|
||
sprintf(dset_name, "dataset %d", j);
|
||
open_t.start = retrieve_time();
|
||
if((dataset = H5Dopen(file, dset_name)) < 0)
|
||
goto error;
|
||
perf(&open_t, open_t.start, retrieve_time());
|
||
|
||
for(k=0; k<BATCH_ATTRS; k++) {
|
||
sprintf(attr_name, "some attrs for each dset %d %d",
|
||
i, k);
|
||
attr_t.start = retrieve_time();
|
||
if((attr = H5Acreate(dataset, attr_name,
|
||
H5T_NATIVE_DOUBLE, small_space, H5P_DEFAULT))
|
||
< 0) goto error;
|
||
if (H5Aclose(attr) < 0) goto error;
|
||
perf(&attr_t, attr_t.start, retrieve_time());
|
||
if(flush_attr && H5Fflush(file, H5F_SCOPE_LOCAL) < 0) goto error;
|
||
}
|
||
|
||
close_t.start = retrieve_time();
|
||
if(H5Dclose(dataset)<0) goto error;
|
||
perf(&close_t, close_t.start, retrieve_time());
|
||
if(flush_dset && H5Fflush(file, H5F_SCOPE_LOCAL) < 0) goto error;
|
||
}
|
||
}
|
||
|
||
if(facc_type == FACC_MPIO || facc_type == FACC_MPIPOSIX) {
|
||
#ifdef H5_HAVE_PARALLEL
|
||
MPI_Barrier(MPI_COMM_WORLD);
|
||
#endif /*H5_HAVE_PARALLEL*/
|
||
}
|
||
|
||
#ifdef H5_HAVE_PARALLEL
|
||
/* only process 0 reports if parallel */
|
||
if (facc_type == FACC_DEFAULT || (facc_type != FACC_DEFAULT && MAINPROCESS))
|
||
#endif /*H5_HAVE_PARALLEL*/
|
||
{
|
||
/* Calculate the average time */
|
||
open_t.avg = open_t.total / (loop_num*NUM_DSETS);
|
||
close_t.avg = close_t.total / (loop_num*NUM_DSETS);
|
||
attr_t.avg = attr_t.total / (NUM_ATTRS*NUM_DSETS);
|
||
|
||
/* Print out the performance result */
|
||
fprintf(stderr, "3. Create %d attributes for each of %d existing datasets for %d times\n",
|
||
BATCH_ATTRS, NUM_DSETS, loop_num);
|
||
print_perf(open_t, close_t, attr_t);
|
||
}
|
||
|
||
if (H5Fclose(file)<0) goto error;
|
||
|
||
return 0;
|
||
|
||
error:
|
||
return -1;
|
||
}
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: retrieve_time
|
||
*
|
||
* Purpose: Returns time in seconds, in a double number.
|
||
*
|
||
* Programmer: Raymond Lu
|
||
* Friday, Oct 3, 2003
|
||
*
|
||
* Modifications:
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
double retrieve_time(void)
|
||
{
|
||
#ifdef H5_HAVE_PARALLEL
|
||
if(facc_type == FACC_DEFAULT) {
|
||
#endif /*H5_HAVE_PARALLEL*/
|
||
struct timeval t;
|
||
gettimeofday(&t, NULL);
|
||
return ((double)t.tv_sec + (double)t.tv_usec / 1000000);
|
||
#ifdef H5_HAVE_PARALLEL
|
||
} else {
|
||
return MPI_Wtime();
|
||
}
|
||
#endif /*H5_HAVE_PARALLEL*/
|
||
}
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: perf
|
||
*
|
||
* Purpose: Calculate total time, maximal and minimal time of
|
||
* performance.
|
||
*
|
||
* Programmer: Raymond Lu
|
||
* Friday, Oct 3, 2003
|
||
*
|
||
* Modifications:
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
void perf(p_time *perf_t, double start_t, double end_t)
|
||
{
|
||
double t = end_t - start_t;
|
||
|
||
if(facc_type == FACC_MPIO || facc_type == FACC_MPIPOSIX) {
|
||
#ifdef H5_HAVE_PARALLEL
|
||
double reduced_t;
|
||
double t_max, t_min;
|
||
int mpi_size, mpi_rank;
|
||
|
||
MPI_Comm_size(MPI_COMM_WORLD, &mpi_size);
|
||
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
|
||
MPI_Barrier(MPI_COMM_WORLD);
|
||
|
||
MPI_Reduce(&t, &reduced_t, 1, MPI_DOUBLE, MPI_SUM, 0,
|
||
MPI_COMM_WORLD);
|
||
reduced_t /= mpi_size;
|
||
|
||
MPI_Reduce(&t, &t_max, 1, MPI_DOUBLE, MPI_MAX, 0,
|
||
MPI_COMM_WORLD);
|
||
MPI_Reduce(&t, &t_min, 1, MPI_DOUBLE, MPI_MIN, 0,
|
||
MPI_COMM_WORLD);
|
||
|
||
if (MAINPROCESS) {
|
||
perf_t->total += reduced_t;
|
||
|
||
if(t_max > perf_t->max)
|
||
perf_t->max = t_max;
|
||
if(t_min < perf_t->min)
|
||
perf_t->min = t_min;
|
||
}
|
||
#endif /*H5_HAVE_PARALLEL*/
|
||
} else {
|
||
perf_t->total += t;
|
||
|
||
if(t > perf_t->max)
|
||
perf_t->max = t;
|
||
if(t < perf_t->min)
|
||
perf_t->min = t;
|
||
}
|
||
}
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: print_perf
|
||
*
|
||
* Purpose: Print out performance data.
|
||
*
|
||
* Programmer: Raymond Lu
|
||
* Friday, Oct 3, 2003
|
||
*
|
||
* Modifications:
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
void print_perf(p_time open_t, p_time close_t, p_time attr_t)
|
||
{
|
||
fprintf(stderr, "\t%s:\t\tavg=%.6fs;\tmax=%.6fs;\tmin=%.6fs\n",
|
||
open_t.func, open_t.avg, open_t.max, open_t.min);
|
||
fprintf(stderr, "\tH5Dclose:\t\tavg=%.6fs;\tmax=%.6fs;\tmin=%.6fs\n",
|
||
close_t.avg, close_t.max, close_t.min);
|
||
if(NUM_ATTRS)
|
||
fprintf(stderr, "\tH5A(create & close):\tavg=%.6fs;\tmax=%.6fs;\tmin=%.6fs\n",
|
||
attr_t.avg, attr_t.max, attr_t.min);
|
||
}
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: main
|
||
*
|
||
* Purpose: Tests
|
||
*
|
||
* Return: Success: exit(0)
|
||
*
|
||
* Failure: exit(1)
|
||
*
|
||
* Programmer: Raymond Lu
|
||
* Friday, Oct 3, 2003
|
||
*
|
||
* Modifications:
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
int
|
||
main(int argc, char **argv)
|
||
{
|
||
#ifdef H5_HAVE_PARALLEL
|
||
int mpi_size, mpi_rank; /* mpi variables */
|
||
#endif /*H5_HAVE_PARALLEL*/
|
||
|
||
if(parse_options(argc, argv) != 0) {
|
||
usage();
|
||
return 0;
|
||
}
|
||
|
||
if(facc_type == FACC_MPIO || facc_type == FACC_MPIPOSIX) {
|
||
#ifdef H5_HAVE_PARALLEL
|
||
MPI_Init(&argc, &argv);
|
||
MPI_Comm_size(MPI_COMM_WORLD, &mpi_size);
|
||
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
|
||
#endif /*H5_HAVE_PARALLEL*/
|
||
}
|
||
|
||
#ifdef H5_HAVE_PARALLEL
|
||
if (facc_type == FACC_DEFAULT || (facc_type != FACC_DEFAULT && MAINPROCESS))
|
||
#endif /*H5_HAVE_PARALLEL*/
|
||
fprintf(stderr, "\t\tPerformance result of metadata for datasets and attributes\n\n");
|
||
|
||
fapl = H5Pcreate (H5P_FILE_ACCESS);
|
||
if(facc_type == FACC_MPIO || facc_type == FACC_MPIPOSIX) {
|
||
#ifdef H5_HAVE_PARALLEL
|
||
if(facc_type == FACC_DEFAULT || facc_type == FACC_MPIO)
|
||
H5Pset_fapl_mpio(fapl, MPI_COMM_WORLD, MPI_INFO_NULL);
|
||
else if(facc_type == FACC_MPIPOSIX)
|
||
H5Pset_fapl_mpiposix(fapl, MPI_COMM_WORLD, FALSE);
|
||
#endif /*H5_HAVE_PARALLEL*/
|
||
}
|
||
|
||
nerrors += create_dspace()<0 ?1:0;
|
||
|
||
if((RUN_TEST & TEST_1) || !RUN_TEST)
|
||
nerrors += create_attrs_1()<0 ?1:0;
|
||
if((RUN_TEST & TEST_2) || !RUN_TEST)
|
||
nerrors += create_attrs_2()<0 ?1:0;
|
||
if(((RUN_TEST & TEST_3) || !RUN_TEST) && BATCH_ATTRS && NUM_ATTRS)
|
||
nerrors += create_attrs_3()<0 ?1:0;
|
||
|
||
if (H5Sclose(space)<0) goto error;
|
||
if (H5Sclose(small_space)<0) goto error;
|
||
|
||
h5_cleanup(FILENAME, fapl);
|
||
|
||
if(facc_type == FACC_MPIO || facc_type == FACC_MPIPOSIX) {
|
||
#ifdef H5_HAVE_PARALLEL
|
||
/* MPI_Finalize must be called AFTER H5close which may use MPI calls */
|
||
MPI_Finalize();
|
||
#endif /*H5_HAVE_PARALLEL*/
|
||
}
|
||
|
||
if (nerrors) goto error;
|
||
#ifdef H5_HAVE_PARALLEL
|
||
if (facc_type != FACC_DEFAULT && MAINPROCESS)
|
||
#endif /*H5_HAVE_PARALLEL*/
|
||
printf("All metadata performance tests passed.\n");
|
||
|
||
return 0;
|
||
|
||
error:
|
||
nerrors = MAX(1, nerrors);
|
||
#ifdef H5_HAVE_PARALLEL
|
||
if (facc_type != FACC_DEFAULT && MAINPROCESS)
|
||
#endif /*H5_HAVE_PARALLEL*/
|
||
printf("***** %d PERFORMANCE TEST%s FAILED! *****\n",
|
||
nerrors, 1 == nerrors ? "" : "S");
|
||
|
||
return 1;
|
||
}
|
||
|