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1099 lines
30 KiB
Bash
1099 lines
30 KiB
Bash
#! /bin/sh
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#
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# Copyright by The HDF Group.
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# Copyright by the Board of Trustees of the University of Illinois.
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# All rights reserved.
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#
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# This file is part of HDF5. The full HDF5 copyright notice, including
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# terms governing use, modification, and redistribution, is contained in
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# the files COPYING and Copyright.html. COPYING can be found at the root
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# of the source code distribution tree; Copyright.html can be found at the
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# root level of an installed copy of the electronic HDF5 document set and
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# is linked from the top-level documents page. It can also be found at
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# http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have
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# access to either file, you may request a copy from help@hdfgroup.org.
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#
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# Tests for the h5repack tool
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#
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# Modification:
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# Pedro Vicente Nunes, 11/15/2006
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# Added $FILEN variables for file names
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#
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srcdir=@srcdir@
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USE_FILTER_SZIP="@USE_FILTER_SZIP@"
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USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@"
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USE_FILTER_SHUFFLE="@USE_FILTER_SHUFFLE@"
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USE_FILTER_FLETCHER32="@USE_FILTER_FLETCHER32@"
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USE_FILTER_NBIT="@USE_FILTER_NBIT@"
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USE_FILTER_SCALEOFFSET="@USE_FILTER_SCALEOFFSET@"
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TESTNAME=h5repack
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EXIT_SUCCESS=0
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EXIT_FAILURE=1
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H5REPACK=h5repack # The tool name
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H5REPACK_BIN=`pwd`/$H5REPACK # The path of the tool binary
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H5DIFF=../h5diff/h5diff # The h5diff tool name
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H5DIFF_BIN=`pwd`/$H5DIFF # The path of the h5diff tool binary
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H5DUMP=../h5dump/h5dump # The h5dump tool name
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H5DUMP_BIN=`pwd`/$H5DUMP # The path of the h5dump tool binary
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GREP='grep'
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CP='cp'
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DIRNAME='dirname'
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LS='ls'
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AWK='awk'
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H5DETECTSZIP=testh5repack_detect_szip
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H5DETECTSZIP_BIN=`pwd`/$H5DETECTSZIP
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nerrors=0
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verbose=yes
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# source dirs
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SRC_TOOLS="$srcdir/.."
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SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles"
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# testfiles source dirs for tools
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SRC_H5LS_TESTFILES="$SRC_TOOLS_TESTFILES"
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SRC_H5DUMP_TESTFILES="$SRC_TOOLS_TESTFILES"
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SRC_H5DIFF_TESTFILES="$SRC_TOOLS/h5diff/testfiles"
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SRC_H5COPY_TESTFILES="$SRC_TOOLS/h5copy/testfiles"
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SRC_H5REPACK_TESTFILES="$SRC_TOOLS/h5repack/testfiles"
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SRC_H5JAM_TESTFILES="$SRC_TOOLS/h5jam/testfiles"
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SRC_H5STAT_TESTFILES="$SRC_TOOLS/h5stat/testfiles"
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SRC_H5IMPORT_TESTFILES="$SRC_TOOLS/h5import/testfiles"
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TESTDIR=./testfiles
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test -d $TESTDIR || mkdir $TESTDIR
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######################################################################
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# test files
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# --------------------------------------------------------------------
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# All the test files copy from source directory to test directory
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# NOTE: Keep this framework to add/remove test files.
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# Any test files from other tools can be used in this framework.
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# This list are also used for checking exist.
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# Comment '#' without space can be used.
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# --------------------------------------------------------------------
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LIST_HDF5_TEST_FILES="
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$SRC_H5REPACK_TESTFILES/h5repack_attr.h5
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$SRC_H5REPACK_TESTFILES/h5repack_attr_refs.h5
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$SRC_H5REPACK_TESTFILES/h5repack_deflate.h5
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$SRC_H5REPACK_TESTFILES/h5repack_early.h5
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$SRC_H5REPACK_TESTFILES/h5repack_ext.h5
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$SRC_H5REPACK_TESTFILES/h5repack_fill.h5
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$SRC_H5REPACK_TESTFILES/h5repack_filters.h5
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$SRC_H5REPACK_TESTFILES/h5repack_fletcher.h5
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$SRC_H5REPACK_TESTFILES/h5repack_hlink.h5
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$SRC_H5REPACK_TESTFILES/h5repack_layout.h5
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$SRC_H5REPACK_TESTFILES/h5repack_layouto.h5
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$SRC_H5REPACK_TESTFILES/h5repack_layout2.h5
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$SRC_H5REPACK_TESTFILES/h5repack_layout3.h5
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$SRC_H5REPACK_TESTFILES/h5repack_named_dtypes.h5
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$SRC_H5REPACK_TESTFILES/h5repack_nbit.h5
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$SRC_H5REPACK_TESTFILES/h5repack_objs.h5
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$SRC_H5REPACK_TESTFILES/h5repack_refs.h5
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$SRC_H5REPACK_TESTFILES/h5repack_shuffle.h5
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$SRC_H5REPACK_TESTFILES/h5repack_soffset.h5
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$SRC_H5REPACK_TESTFILES/h5repack_szip.h5
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$SRC_H5DIFF_TESTFILES/h5diff_attr1.h5
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$SRC_TOOLS_TESTFILES/tfamily00000.h5
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$SRC_TOOLS_TESTFILES/tfamily00001.h5
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$SRC_TOOLS_TESTFILES/tfamily00002.h5
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$SRC_TOOLS_TESTFILES/tfamily00003.h5
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$SRC_TOOLS_TESTFILES/tfamily00004.h5
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$SRC_TOOLS_TESTFILES/tfamily00005.h5
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$SRC_TOOLS_TESTFILES/tfamily00006.h5
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$SRC_TOOLS_TESTFILES/tfamily00007.h5
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$SRC_TOOLS_TESTFILES/tfamily00008.h5
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$SRC_TOOLS_TESTFILES/tfamily00009.h5
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$SRC_TOOLS_TESTFILES/tfamily00010.h5
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"
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LIST_OTHER_TEST_FILES="
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$SRC_H5REPACK_TESTFILES/h5repack-help.txt
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$SRC_H5REPACK_TESTFILES/h5repack_ext.bin
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$SRC_H5REPACK_TESTFILES/ublock.bin
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$SRC_H5REPACK_TESTFILES/h5repack.info
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$SRC_H5REPACK_TESTFILES/deflate_limit.h5repack_layout.h5.ddl
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$SRC_H5REPACK_TESTFILES/h5repack_layout.h5.ddl
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$SRC_H5REPACK_TESTFILES/h5repack_filters.h5.tst
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$SRC_H5REPACK_TESTFILES/h5repack_layout.h5-plugin_test.ddl
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$SRC_H5REPACK_TESTFILES/plugin_test.h5repack_layout.h5.tst
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"
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#
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# copy test files and expected output files from source dirs to test dir
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#
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COPY_TESTFILES="$LIST_HDF5_TEST_FILES $LIST_OTHER_TEST_FILES"
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COPY_TESTFILES_TO_TESTDIR()
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{
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# copy test files. Used -f to make sure get a new copy
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for tstfile in $COPY_TESTFILES
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do
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# ignore '#' comment
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echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
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RET=$?
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if [ $RET -eq 1 ]; then
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# skip cp if srcdir is same as destdir
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# this occurs when build/test performed in source dir and
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# make cp fail
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SDIR=`$DIRNAME $tstfile`
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INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
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INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'`
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if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
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$CP -f $tstfile $TESTDIR
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if [ $? -ne 0 ]; then
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echo "Error: FAILED to copy $tstfile ."
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# Comment out this to CREATE expected file
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exit $EXIT_FAILURE
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fi
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fi
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fi
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done
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}
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# Print a $* message left justified in a field of 70 characters
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#
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MESSAGE() {
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SPACES=" "
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echo "$* $SPACES" | cut -c1-70 | tr -d '\012'
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}
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# Print a line-line message left justified in a field of 70 characters
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# beginning with the word "Testing".
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#
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TESTING() {
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MESSAGE "Testing $*"
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}
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# Print a line-line message left justified in a field of 70 characters
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# beginning with the word "Verifying".
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#
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VERIFY() {
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MESSAGE "Verifying $*"
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}
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# Print a message that a test has been skipped (because a required filter
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# was unavailable)
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SKIP() {
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TESTING $H5REPACK $@
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echo " -SKIP-"
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}
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# Call the h5diff tool
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#
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DIFFTEST()
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{
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VERIFY h5diff output $@
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(
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$RUNSERIAL $H5DIFF_BIN -q "$@"
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)
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RET=$?
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if [ $RET != 0 ] ; then
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echo "*FAILED*"
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nerrors="`expr $nerrors + 1`"
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else
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echo " PASSED"
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fi
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}
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# Call h5repack
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#
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# call TOOLTEST_MAIN and delete $output file
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TOOLTEST()
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{
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echo $@
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infile=$TESTDIR/$2
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outfile=$TESTDIR/out-$1.$2
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shift
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shift
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# Run test.
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TESTING $H5REPACK $@
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(
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$RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
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)
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RET=$?
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if [ $RET != 0 ] ; then
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echo "*FAILED*"
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nerrors="`expr $nerrors + 1`"
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else
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echo " PASSED"
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DIFFTEST $infile $outfile
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fi
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rm -f $outfile
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}
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#------------------------------------------
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# Verifying layouts of a dataset
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VERIFY_LAYOUT_DSET()
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{
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layoutfile=$TESTDIR/layout-$1.$2
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dset=$3
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expectlayout=$4
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infile=$TESTDIR/$2
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outfile=$TESTDIR/out-$1.$2
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shift
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shift
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shift
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shift
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TESTING $H5REPACK $@
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(
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$RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
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)
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RET=$?
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if [ $RET != 0 ] ; then
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echo "*FAILED*"
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nerrors="`expr $nerrors + 1`"
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else
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echo " PASSED"
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DIFFTEST $infile $outfile
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fi
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#---------------------------------
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# check the layout from a dataset
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VERIFY "a dataset layout"
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(
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$RUNSERIAL $H5DUMP_BIN -d $dset -pH $outfile > $layoutfile
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)
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$GREP $expectlayout $layoutfile > /dev/null
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if [ $? -eq 0 ]; then
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echo " PASSED"
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else
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echo " FAILED"
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nerrors="`expr $nerrors + 1`"
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fi
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# clean up tmp files
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rm -f $outfile
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rm -f $layoutfile
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}
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#----------------------------------------
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# Verifying layouts from entire file
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VERIFY_LAYOUT_ALL()
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{
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infile=$2
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outfile=$TESTDIR/out-$1.$2
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layoutfile=$TESTDIR/layout-$1.$2
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expectlayout=$3
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shift
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shift
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shift
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TESTING $H5REPACK $@
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(
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$RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
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)
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RET=$?
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if [ $RET != 0 ] ; then
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echo "*FAILED*"
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nerrors="`expr $nerrors + 1`"
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else
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echo " PASSED"
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DIFFTEST $infile $outfile
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fi
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#---------------------------------
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# check the layout from a dataset
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# check if the other layouts still exsit
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VERIFY "layouts"
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(
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echo
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# if CONTIGUOUS
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if [ $expectlayout = "CONTIGUOUS" ]; then
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TESTING $H5DUMP_BIN -pH $outfile
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(
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$RUNSERIAL $H5DUMP_BIN -pH $outfile > $layoutfile
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)
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$GREP "COMPACT" $layoutfile > /dev/null
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if [ $? -eq 0 ]; then
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echo " FAILED"
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nerrors="`expr $nerrors + 1`"
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else
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$GREP "CHUNKED" $layoutfile > /dev/null
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if [ $? -eq 0 ]; then
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echo " FAILED"
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nerrors="`expr $nerrors + 1`"
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else
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echo " PASSED"
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fi
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fi
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else
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# if COMPACT
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if [ $expectlayout = "COMPACT" ]; then
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TESTING $H5DUMP_BIN -pH $outfile
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(
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$RUNSERIAL $H5DUMP_BIN -pH $outfile > $layoutfile
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)
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$GREP "CHUNKED" $layoutfile > /dev/null
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if [ $? -eq 0 ]; then
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echo " FAILED"
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nerrors="`expr $nerrors + 1`"
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else
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$GREP "CONTIGUOUS" $layoutfile > /dev/null
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if [ $? -eq 0 ]; then
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echo " FAILED"
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nerrors="`expr $nerrors + 1`"
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else
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echo " PASSED"
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fi
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fi
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else
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# if CHUNKED
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if [ $expectlayout = "CHUNKED" ]; then
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TESTING $H5DUMP_BIN -pH $outfile
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(
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$RUNSERIAL $H5DUMP_BIN -pH $outfile > $layoutfile
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)
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$GREP "CONTIGUOUS" $layoutfile > /dev/null
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if [ $? -eq 0 ]; then
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echo " FAILED"
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nerrors="`expr $nerrors + 1`"
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else
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$GREP "COMPACT" $layoutfile > /dev/null
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if [ $? -eq 0 ]; then
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echo " FAILED"
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nerrors="`expr $nerrors + 1`"
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else
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echo " PASSED"
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fi
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fi
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fi
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fi
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fi
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)
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# clean up tmp files
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rm -f $outfile
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rm -f $layoutfile
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}
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# same as TOOLTEST, but it uses the old syntax -i input_file -o output_file
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#
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TOOLTEST0()
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{
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infile=$TESTDIR/$2
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outfile=$TESTDIR/out-$1.$2
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shift
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shift
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# Run test.
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TESTING $H5REPACK $@
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(
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$RUNSERIAL $H5REPACK_BIN -i $infile -o $outfile "$@"
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)
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RET=$?
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if [ $RET != 0 ] ; then
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echo "*FAILED*"
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nerrors="`expr $nerrors + 1`"
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else
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echo " PASSED"
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DIFFTEST $infile $outfile
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fi
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rm -f $outfile
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}
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# same as TOOLTEST, but it uses without -i -o options
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# used to test the family driver, where these files reside
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#
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TOOLTEST1()
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{
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infile=$TESTDIR/$2
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outfile=$TESTDIR/out-$1.$2
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shift
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shift
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# Run test.
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TESTING $H5REPACK $@
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(
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$RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
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)
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RET=$?
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if [ $RET != 0 ] ; then
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echo "*FAILED*"
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nerrors="`expr $nerrors + 1`"
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else
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echo " PASSED"
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DIFFTEST $infile $outfile
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fi
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rm -f $outfile
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}
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# This is same as TOOLTEST() with comparing display output
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# from -v option
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#
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TOOLTESTV()
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{
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expect="$TESTDIR/$2.tst"
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actual="$TESTDIR/`basename $2 .ddl`.out"
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actual_err="$TESTDIR/`basename $2 .ddl`.err"
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infile=$TESTDIR/$2
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outfile=$TESTDIR/out-$1.$2
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shift
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shift
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# Run test.
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TESTING $H5REPACK $@
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(
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$RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
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) >$actual 2>$actual_err
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RET=$?
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if [ $RET != 0 ] ; then
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echo "*FAILED*"
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nerrors="`expr $nerrors + 1`"
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else
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echo " PASSED"
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DIFFTEST $infile $outfile
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fi
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# display output compare
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STDOUT_FILTER $actual
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cat $actual_err >> $actual
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VERIFY output from $H5REPACK $@
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if cmp -s $expect $actual; then
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echo " PASSED"
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else
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echo "*FAILED*"
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echo " Expected result (*.tst) differs from actual result (*.out)"
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nerrors="`expr $nerrors + 1`"
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test yes = "$verbose" && diff -c $expect $actual |sed 's/^/ /'
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fi
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rm -f $actual $actual_err
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rm -f $outfile
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}
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|
# This is same as TOOLTESTV() with comparing h5dump output
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|
# from -pH option
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|
#
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TOOLTEST_DUMP()
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|
{
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infile=$TESTDIR/$2
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outfile=$TESTDIR/out-$1.$2
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expect="$TESTDIR/$1.$2.ddl"
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actual="$TESTDIR/out-$1.$2.out"
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actual_err="$TESTDIR/out-$1.$2.err"
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shift
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shift
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# Run test.
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TESTING $H5REPACK $@
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(
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$RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
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) >$actual 2>$actual_err
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RET=$?
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|
if [ $RET != 0 ] ; then
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echo "*FAILED*"
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nerrors="`expr $nerrors + 1`"
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else
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echo " PASSED"
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VERIFY h5dump output $@
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(
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$RUNSERIAL $H5DUMP_BIN -pH $outfile
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) >$actual 2>$actual_err
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cat $actual_err >> $actual
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RET=$?
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fi
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|
|
if cmp -s $expect $actual; then
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echo " PASSED"
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else
|
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echo "*FAILED*"
|
|
echo " Expected result (*.ddl) differs from actual result (*.out)"
|
|
nerrors="`expr $nerrors + 1`"
|
|
test yes = "$verbose" && diff -c $expect $actual |sed 's/^/ /'
|
|
fi
|
|
|
|
rm -f $actual $actual_err
|
|
rm -f $outfile
|
|
}
|
|
|
|
# TOOLTEST_META:
|
|
# Test metadata block size option.
|
|
# Reason to create a function here is to localize all special steps related to
|
|
# metadata block size option in one place. This is a quick solution. More
|
|
# thought out solution needed when there is more time.
|
|
#
|
|
# $1: test input file
|
|
# $2:$: metadata options (either "-M size" or "--metadata_block_size=size")
|
|
#
|
|
# Algorithm:
|
|
# Run it once without the metadata option ($2-$);
|
|
# Save the result output file;
|
|
# Run it second time with the metadata option;
|
|
# Verify the output file of second run is larger than the one of 1st run.
|
|
TOOLTEST_META()
|
|
{
|
|
infile=$TESTDIR/$2
|
|
outfile=$TESTDIR/out-$1.$2
|
|
shift
|
|
shift
|
|
|
|
# Run test.
|
|
TESTING $H5REPACK $@
|
|
(
|
|
$RUNSERIAL $H5REPACK_BIN $infile $outfile
|
|
)
|
|
RET=$?
|
|
if [ $RET != 0 ] ; then
|
|
echo "*FAILED*"
|
|
nerrors="`expr $nerrors + 1`"
|
|
else
|
|
echo " PASSED"
|
|
DIFFTEST $infile $outfile
|
|
fi
|
|
# get the size of the first output file
|
|
size1=`wc -c $outfile | cut -d' ' -f1`
|
|
|
|
# 2nd run with metadata option
|
|
# Run test.
|
|
TESTING $H5REPACK $@
|
|
(
|
|
$RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
|
|
)
|
|
RET=$?
|
|
if [ $RET != 0 ] ; then
|
|
echo "*FAILED*"
|
|
nerrors="`expr $nerrors + 1`"
|
|
else
|
|
echo " PASSED"
|
|
DIFFTEST $infile $outfile
|
|
fi
|
|
# get the size of the second output file
|
|
size2=`wc -c $outfile | cut -d' ' -f1`
|
|
|
|
# verify sizes.
|
|
MESSAGE "Verify the sizes of both output files ($size1 vs $size2)"
|
|
if [ $size1 -lt $size2 ]; then
|
|
# pass
|
|
echo " PASSED"
|
|
else
|
|
#fail
|
|
echo "*FAILED*"
|
|
nerrors="`expr $nerrors + 1`"
|
|
fi
|
|
|
|
rm -f $outfile
|
|
}
|
|
# ADD_HELP_TEST
|
|
TOOLTEST_HELP() {
|
|
|
|
expect="$TESTDIR/$1"
|
|
actual="$TESTDIR/`basename $1 .txt`.out"
|
|
actual_err="$TESTDIR/`basename $1 .txt`.err"
|
|
shift
|
|
|
|
# Run test.
|
|
TESTING $H5REPACK $@
|
|
(
|
|
cd $TESTDIR
|
|
$RUNSERIAL $H5REPACK_BIN "$@"
|
|
) >$actual 2>$actual_err
|
|
cat $actual_err >> $actual
|
|
|
|
if [ ! -f $expect ]; then
|
|
# Create the expect data file if it doesn't yet exist.
|
|
echo " CREATED"
|
|
cp $actual $expect-CREATED
|
|
elif cmp -s $expect $actual; then
|
|
echo " PASSED"
|
|
else
|
|
echo "*FAILED*"
|
|
echo " Expected output (*.txt) differs from actual output (*.out)"
|
|
nerrors="`expr $nerrors + 1`"
|
|
fi
|
|
|
|
# Clean up output file
|
|
if test -z "$HDF5_NOCLEANUP"; then
|
|
rm -f $actual $actual_err
|
|
fi
|
|
|
|
}
|
|
|
|
# This is different from $srcdir/../../bin/output_filter.sh
|
|
STDOUT_FILTER() {
|
|
result_file=$1
|
|
tmp_file=/tmp/h5test_tmp_$$
|
|
# Filter name of files.
|
|
cp $result_file $tmp_file
|
|
sed -e '/^Opening file/d' -e '/^Making file/d' \
|
|
< $tmp_file > $result_file
|
|
# cleanup
|
|
rm -f $tmp_file
|
|
}
|
|
|
|
#
|
|
# The tests
|
|
# We use the files generated by h5repacktst
|
|
# Each run generates "<file>.out.h5" and the tool h5diff is used to
|
|
# compare the input and output files
|
|
#
|
|
# the tests are the same as the program h5repacktst, but run from the CLI
|
|
#
|
|
|
|
# See which filters are usable (and skip tests for filters we
|
|
# don't have). Do this by searching H5pubconf.h to see which
|
|
# filters are defined.
|
|
|
|
# detect whether the encoder is present.
|
|
USE_FILTER_SZIP_ENCODER="no";
|
|
if test $USE_FILTER_SZIP = "yes"; then
|
|
USE_FILTER_SZIP_ENCODER=`$RUNSERIAL $H5DETECTSZIP_BIN`
|
|
fi
|
|
|
|
##############################################################################
|
|
### T H E T E S T S
|
|
##############################################################################
|
|
# prepare for test
|
|
COPY_TESTFILES_TO_TESTDIR
|
|
|
|
TOOLTEST_HELP h5repack-help.txt -h
|
|
|
|
# copy files (these files have no filters)
|
|
TOOLTEST fill h5repack_fill.h5
|
|
TOOLTEST objs h5repack_objs.h5
|
|
TOOLTEST attr h5repack_attr.h5
|
|
TOOLTEST hlink h5repack_hlink.h5
|
|
TOOLTEST layout h5repack_layout.h5
|
|
TOOLTEST early h5repack_early.h5
|
|
|
|
|
|
# use h5repack_layout.h5 to write some filters (this file has no filters)
|
|
|
|
# gzip with individual object
|
|
arg="h5repack_layout.h5 -f dset1:GZIP=1 -l dset1:CHUNK=20x10"
|
|
if test $USE_FILTER_DEFLATE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST gzip_individual $arg
|
|
fi
|
|
|
|
# gzip for all
|
|
arg="h5repack_layout.h5 -f GZIP=1"
|
|
if test $USE_FILTER_DEFLATE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST gzip_all $arg
|
|
fi
|
|
|
|
# szip with individual object
|
|
arg="h5repack_layout.h5 -f dset2:SZIP=8,EC -l dset2:CHUNK=20x10"
|
|
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST szip_individual $arg
|
|
fi
|
|
|
|
# szip for all
|
|
arg="h5repack_layout.h5 -f SZIP=8,NN"
|
|
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST szip_all $arg
|
|
fi
|
|
|
|
# shuffle with individual object
|
|
arg="h5repack_layout.h5 -f dset2:SHUF -l dset2:CHUNK=20x10"
|
|
if test $USE_FILTER_SHUFFLE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST shuffle_individual $arg
|
|
fi
|
|
|
|
|
|
# shuffle for all
|
|
arg="h5repack_layout.h5 -f SHUF"
|
|
if test $USE_FILTER_SHUFFLE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST shuffle_all $arg
|
|
fi
|
|
|
|
# fletcher32 with individual object
|
|
arg="h5repack_layout.h5 -f dset2:FLET -l dset2:CHUNK=20x10"
|
|
if test $USE_FILTER_FLETCHER32 != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST fletcher_individual $arg
|
|
fi
|
|
|
|
# fletcher32 for all
|
|
arg="h5repack_layout.h5 -f FLET"
|
|
if test $USE_FILTER_FLETCHER32 != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST fletcher_all $arg
|
|
fi
|
|
|
|
# all filters
|
|
arg="h5repack_layout.h5 -f dset2:SHUF -f dset2:FLET -f dset2:SZIP=8,NN -f dset2:GZIP=1 -l dset2:CHUNK=20x10"
|
|
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SHUFFLE != "yes" -o $USE_FILTER_FLETCHER32 != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST all_filters $arg
|
|
fi
|
|
|
|
# verbose gzip with individual object
|
|
arg="h5repack_filters.h5 -v -f /dset_deflate:GZIP=9"
|
|
if test $USE_FILTER_DEFLATE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
# compare output
|
|
TOOLTESTV gzip_verbose_filters $arg
|
|
fi
|
|
|
|
###########################################################
|
|
# the following tests assume the input files have filters
|
|
###########################################################
|
|
|
|
# szip copy
|
|
arg="h5repack_szip.h5"
|
|
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST szip_copy $arg
|
|
fi
|
|
|
|
# szip remove
|
|
arg="h5repack_szip.h5 --filter=dset_szip:NONE"
|
|
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST szip_remove $arg
|
|
fi
|
|
|
|
# deflate copy
|
|
arg="h5repack_deflate.h5"
|
|
if test $USE_FILTER_DEFLATE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST deflate_copy $arg
|
|
fi
|
|
|
|
# deflate remove
|
|
arg="h5repack_deflate.h5 -f dset_deflate:NONE"
|
|
if test $USE_FILTER_DEFLATE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST deflate_remove $arg
|
|
fi
|
|
|
|
# shuffle copy
|
|
arg="h5repack_shuffle.h5"
|
|
if test $USE_FILTER_SHUFFLE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST shuffle_copy $arg
|
|
fi
|
|
|
|
# shuffle remove
|
|
arg="h5repack_shuffle.h5 -f dset_shuffle:NONE"
|
|
if test $USE_FILTER_SHUFFLE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST shuffle_remove $arg
|
|
fi
|
|
|
|
# fletcher32 copy
|
|
arg="h5repack_fletcher.h5"
|
|
if test $USE_FILTER_FLETCHER32 != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST fletcher_copy $arg
|
|
fi
|
|
|
|
# fletcher32 remove
|
|
arg="h5repack_fletcher.h5 -f dset_fletcher32:NONE"
|
|
if test $USE_FILTER_FLETCHER32 != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST fletcher_remove $arg
|
|
fi
|
|
|
|
# nbit copy
|
|
arg="h5repack_nbit.h5"
|
|
if test $USE_FILTER_NBIT != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST nbit_copy $arg
|
|
fi
|
|
|
|
# nbit remove
|
|
arg="h5repack_nbit.h5 -f dset_nbit:NONE"
|
|
if test $USE_FILTER_NBIT != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST nbit_remove $arg
|
|
fi
|
|
|
|
# nbit add
|
|
arg="h5repack_nbit.h5 -f dset_int31:NBIT"
|
|
if test $USE_FILTER_NBIT != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST nbit_add $arg
|
|
fi
|
|
|
|
# scaleoffset copy
|
|
arg="h5repack_soffset.h5"
|
|
if test $USE_FILTER_SCALEOFFSET != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST scale_copy $arg
|
|
fi
|
|
|
|
# scaleoffset add
|
|
arg="h5repack_soffset.h5 -f dset_none:SOFF=31,IN"
|
|
if test $USE_FILTER_SCALEOFFSET != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST scale_add $arg
|
|
fi
|
|
|
|
# scaleoffset remove
|
|
arg="h5repack_soffset.h5 -f dset_scaleoffset:NONE"
|
|
if test $USE_FILTER_SCALEOFFSET != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST scale_remove $arg
|
|
fi
|
|
|
|
# remove all filters
|
|
arg="h5repack_filters.h5 -f NONE"
|
|
if test $USE_FILTER_FLETCHER32 != "yes" -o $USE_FILTER_DEFLATE != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SHUFFLE != "yes" -o $USE_FILTER_NBIT != "yes" -o $USE_FILTER_SCALEOFFSET != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST remove_all $arg
|
|
fi
|
|
|
|
#filter conversions
|
|
|
|
arg="h5repack_deflate.h5 -f dset_deflate:SZIP=8,NN"
|
|
if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST deflate_convert $arg
|
|
fi
|
|
|
|
arg="h5repack_szip.h5 -f dset_szip:GZIP=1"
|
|
if test $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST szip_convert $arg
|
|
fi
|
|
|
|
|
|
#limit
|
|
arg="h5repack_layout.h5 -f GZIP=1 -m 1024"
|
|
if test $USE_FILTER_DEFLATE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST_DUMP deflate_limit $arg
|
|
fi
|
|
|
|
#file
|
|
arg="h5repack_layout.h5 -e $TESTDIR/h5repack.info"
|
|
if test $USE_FILTER_DEFLATE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST deflate_file $arg
|
|
fi
|
|
|
|
#########################################################
|
|
# layout options (these files have no filters)
|
|
#########################################################
|
|
VERIFY_LAYOUT_DSET dset2_chunk_20x10 h5repack_layout.h5 dset2 CHUNKED --layout dset2:CHUNK=20x10
|
|
|
|
VERIFY_LAYOUT_ALL chunk_20x10 h5repack_layout.h5 CHUNKED -l CHUNK=20x10
|
|
|
|
VERIFY_LAYOUT_DSET dset2_conti h5repack_layout.h5 dset2 CONTIGUOUS -l dset2:CONTI
|
|
|
|
VERIFY_LAYOUT_ALL conti h5repack_layout.h5 CONTIGUOUS -l CONTI
|
|
|
|
VERIFY_LAYOUT_DSET dset2_compa h5repack_layout.h5 dset2 COMPACT -l dset2:COMPA
|
|
|
|
VERIFY_LAYOUT_ALL compa h5repack_layout.h5 COMPACT -l COMPA
|
|
|
|
################################################################
|
|
# layout conversions (file has no filters)
|
|
###############################################################
|
|
|
|
VERIFY_LAYOUT_DSET dset_compa_conti h5repack_layout.h5 dset_compact CONTIGUOUS -l dset_compact:CONTI
|
|
|
|
VERIFY_LAYOUT_DSET dset_compa_chunk h5repack_layout.h5 dset_compact CHUNKED -l dset_compact:CHUNK=2x5
|
|
|
|
VERIFY_LAYOUT_DSET dset_compa_compa h5repack_layout.h5 dset_compact COMPACT -l dset_compact:COMPA
|
|
|
|
VERIFY_LAYOUT_DSET dset_conti_compa h5repack_layout.h5 dset_contiguous COMPACT -l dset_contiguous:COMPA
|
|
|
|
VERIFY_LAYOUT_DSET dset_conti_chunk h5repack_layout.h5 dset_contiguous CHUNKED -l dset_contiguous:CHUNK=3x6
|
|
|
|
VERIFY_LAYOUT_DSET dset_conti_conti h5repack_layout.h5 dset_contiguous CONTIGUOUS -l dset_contiguous:CONTI
|
|
|
|
VERIFY_LAYOUT_DSET chunk_compa h5repack_layout.h5 dset_chunk COMPACT -l dset_chunk:COMPA
|
|
|
|
VERIFY_LAYOUT_DSET chunk_conti h5repack_layout.h5 dset_chunk CONTIGUOUS -l dset_chunk:CONTI
|
|
|
|
VERIFY_LAYOUT_DSET chunk_18x13 h5repack_layout.h5 dset_chunk CHUNKED -l dset_chunk:CHUNK=18x13
|
|
|
|
# test convert small size dataset ( < 1k) to compact layout without -m
|
|
VERIFY_LAYOUT_DSET contig_small_compa h5repack_layout2.h5 contig_small COMPACT -l contig_small:COMPA
|
|
|
|
VERIFY_LAYOUT_DSET contig_small_fixed_compa h5repack_layout2.h5 chunked_small_fixed COMPACT -l chunked_small_fixed:COMPA
|
|
|
|
#---------------------------------------------------------------------------
|
|
# Test file contains chunked datasets (need multiple dsets) with
|
|
# unlimited max dims. (HDFFV-7933)
|
|
# Use first dset to test.
|
|
#---------------------------------------------------------------------------
|
|
# chunk to chunk - specify chunk dim bigger than any current dim
|
|
VERIFY_LAYOUT_DSET chunk2chunk h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk_unlimit1:CHUNK=100x300
|
|
|
|
# chunk to contiguous
|
|
VERIFY_LAYOUT_DSET chunk2conti h5repack_layout3.h5 chunk_unlimit1 CONTI -l chunk_unlimit1:CONTI
|
|
|
|
# chunk to compact - convert big dataset (should be > 64k) for this purpose,
|
|
# should remain as original layout (chunk)
|
|
VERIFY_LAYOUT_DSET chunk2compa h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk_unlimit1:COMPA
|
|
|
|
#--------------------------------------------------------------------------
|
|
# Test -f for some specific cases. Chunked dataset with unlimited max dims.
|
|
# (HDFFV-8012)
|
|
#--------------------------------------------------------------------------
|
|
# - should not fail
|
|
# - should not change max dims from unlimit
|
|
|
|
# chunk dim is bigger than dataset dim. ( dset size < 64k )
|
|
VERIFY_LAYOUT_DSET error1 h5repack_layout3.h5 chunk_unlimit1 H5S_UNLIMITED -f chunk_unlimit1:NONE
|
|
# chunk dim is bigger than dataset dim. ( dset size > 64k )
|
|
VERIFY_LAYOUT_DSET error2 h5repack_layout3.h5 chunk_unlimit2 H5S_UNLIMITED -f chunk_unlimit2:NONE
|
|
|
|
# chunk dims are smaller than dataset dims. ( dset size < 64k )
|
|
#TOOLTEST_MAIN h5repack_layout3.h5 -f chunk_unlimit3:NONE
|
|
VERIFY_LAYOUT_DSET error3 h5repack_layout3.h5 chunk_unlimit3 H5S_UNLIMITED -f chunk_unlimit3:NONE
|
|
|
|
# file input - should not fail
|
|
TOOLTEST error4 h5repack_layout3.h5 -f NONE
|
|
|
|
#--------------------------------------------------------------------------
|
|
# Test base: Convert CHUNK to CONTI for a chunked dataset with small dataset
|
|
# (dset size < 64K) and with unlimited max dims on a condition as follow.
|
|
# (HDFFV-8214)
|
|
#--------------------------------------------------------------------------
|
|
|
|
# chunk dim is bigger than dataset dim. should succeed.
|
|
VERIFY_LAYOUT_DSET ckdim_biger h5repack_layout3.h5 chunk_unlimit2 CONTI -l chunk_unlimit2:CONTI
|
|
# chunk dim is smaller than dataset dim. should succeed.
|
|
VERIFY_LAYOUT_DSET ckdim_smaller h5repack_layout3.h5 chunk_unlimit3 CONTI -l chunk_unlimit3:CONTI
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# Native option
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# Do not use FILE1, as the named dtype will be converted to native, and h5diff will
|
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# report a difference.
|
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TOOLTEST native_fill h5repack_fill.h5 -n
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TOOLTEST native_attr h5repack_attr.h5 -n
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# latest file format with long switches. use FILE4=h5repack_layout.h5 (no filters)
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arg="h5repack_layout.h5 --layout CHUNK=20x10 --filter GZIP=1 --minimum=10 --native --latest --compact=8 --indexed=6 --ssize=8[:dtype]"
|
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if test $USE_FILTER_DEFLATE != "yes" ; then
|
|
SKIP $arg
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else
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VERIFY_LAYOUT_ALL layout_long_switches h5repack_layout.h5 CHUNKED --layout CHUNK=20x10 --filter GZIP=1 --minimum=10 --native --latest --compact=8 --indexed=6 --ssize=8[:dtype]
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fi
|
|
|
|
# latest file format with short switches. use FILE4=h5repack_layout.h5 (no filters)
|
|
arg="h5repack_layout.h5 -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype]"
|
|
if test $USE_FILTER_DEFLATE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
VERIFY_LAYOUT_ALL layout_short_switches h5repack_layout.h5 CHUNKED -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype]
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|
fi
|
|
|
|
# several global filters
|
|
|
|
arg="h5repack_layout.h5 --filter GZIP=1 --filter SHUF"
|
|
if test $USE_FILTER_DEFLATE != "yes" -o $USE_FILTER_SHUFFLE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST global_filters $arg
|
|
fi
|
|
|
|
# syntax of -i infile -o outfile
|
|
# latest file format with short switches. use FILE4=h5repack_layout.h5 (no filters)
|
|
arg="h5repack_layout.h5 -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype]"
|
|
if test $USE_FILTER_DEFLATE != "yes" ; then
|
|
SKIP $arg
|
|
else
|
|
TOOLTEST0 old_style_layout_short_switches $arg
|
|
fi
|
|
|
|
# add a userblock to file
|
|
arg="h5repack_objs.h5 -u $TESTDIR/ublock.bin -b 2048"
|
|
TOOLTEST add_userblock $arg
|
|
|
|
# add alignment
|
|
arg="h5repack_objs.h5 -t 1 -a 1 "
|
|
TOOLTEST add_alignment $arg
|
|
|
|
# Check repacking file with old version of layout message (should get upgraded
|
|
# to new version and be readable, etc.)
|
|
TOOLTEST pgrade_layout h5repack_layouto.h5
|
|
|
|
# test for datum size > H5TOOLS_MALLOCSIZE
|
|
TOOLTEST gt_mallocsize h5repack_objs.h5 -f GZIP=1
|
|
|
|
# Check repacking file with committed datatypes in odd configurations
|
|
TOOLTEST committed_dt h5repack_named_dtypes.h5
|
|
|
|
# tests family driver (file is located in common testfiles folder, uses TOOLTEST1
|
|
TOOLTEST1 family tfamily%05d.h5
|
|
|
|
# test various references (bug 1814 and 1726)
|
|
TOOLTEST bug1814 h5repack_refs.h5
|
|
|
|
# test attribute with various references (bug1797 / HDFFV-5932)
|
|
# the references in attribute of compund or vlen datatype
|
|
TOOLTEST HDFFV-5932 h5repack_attr_refs.h5
|
|
|
|
# Add test for memory leak in attirbute. This test is verified by CTEST.
|
|
# 1. leak from vlen string
|
|
# 2. leak from compound type without reference member
|
|
# (HDFFV-7840, )
|
|
# Note: this test is experimental for sharing test file among tools
|
|
TOOLTEST HDFFV-7840 h5diff_attr1.h5
|
|
|
|
# tests for metadata block size option
|
|
TOOLTEST_META meta_short h5repack_layout.h5 -M 8192
|
|
TOOLTEST_META meta_long h5repack_layout.h5 --metadata_block_size=8192
|
|
|
|
if test $nerrors -eq 0 ; then
|
|
echo "All $TESTNAME tests passed."
|
|
exit $EXIT_SUCCESS
|
|
else
|
|
echo "$TESTNAME tests failed with $nerrors errors."
|
|
exit $EXIT_FAILURE
|
|
fi
|
|
|