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hdf5/test/trefer_deprec.c
jhendersonHDF 28d2b6771f
HDF5 API test updates (#3835) 
* HDF5 API test updates

Removed test duplication from bringing API tests
back into the library from external VOL tests
repo

Synced changes between API tests and library's
tests

Updated API tests CMake code to directly use and
install testhdf5, testphdf5, etc. instead of
creating duplicate binaries

Added new h5_using_native_vol() test function to
determine whether the VOL connector being used
is (or the VOL connector stack being used resolves
to) the native VOL connector

* Remove duplicate variable
2023-11-13 13:49:38 -06:00

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/***********************************************************
*
* Test program: trefer_deprec
*
* Test the Reference functionality
*
*************************************************************/
#include "testhdf5.h"
#define FILE1 "trefer1.h5"
#define FILE2 "trefer2.h5"
#define FILE3 "trefer3.h5"
/* 1-D dataset with fixed dimensions */
#define SPACE1_RANK 1
#define SPACE1_DIM1 4
/* 2-D dataset with fixed dimensions */
#define SPACE2_RANK 2
#define SPACE2_DIM1 10
#define SPACE2_DIM2 10
/* Larger 1-D dataset with fixed dimensions */
#define SPACE3_RANK 1
#define SPACE3_DIM1 100
/* Element selection information */
#define POINT1_NPOINTS 10
/* Compound datatype */
typedef struct s1_t {
unsigned int a;
unsigned int b;
float c;
} s1_t;
#define GROUPNAME "/group"
#define GROUPNAME2 "group2"
#define GROUPNAME3 "group3"
#define DSETNAME "/dset"
#define DSETNAME2 "dset2"
#define NAME_SIZE 16
/****************************************************************
**
** test_reference_params(): Test basic H5R (reference) parameters
** for correct processing
**
****************************************************************/
static void
test_reference_params(void)
{
hid_t fid1; /* HDF5 File IDs */
hid_t dataset, /* Dataset ID */
dset2; /* Dereferenced dataset ID */
hid_t group; /* Group ID */
hid_t sid1; /* Dataspace ID */
hid_t tid1; /* Datatype ID */
hid_t dapl_id; /* Dataset access property list */
hsize_t dims1[] = {SPACE1_DIM1};
hobj_ref_t *wbuf, /* buffer to write to disk */
*rbuf, /* buffer read from disk */
*tbuf; /* temp. buffer read from disk */
unsigned *tu32; /* Temporary pointer to uint32 data */
int i; /* counting variables */
const char *write_comment = "Foo!"; /* Comments for group */
hid_t ret_id; /* Generic hid_t return value */
ssize_t name_size; /* Size of reference name */
herr_t ret; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing Reference Parameters\n"));
/* Allocate write & read buffers */
wbuf = (hobj_ref_t *)malloc(MAX(sizeof(unsigned), sizeof(hobj_ref_t)) * SPACE1_DIM1);
CHECK_PTR(wbuf, "malloc");
rbuf = (hobj_ref_t *)malloc(MAX(sizeof(unsigned), sizeof(hobj_ref_t)) * SPACE1_DIM1);
CHECK_PTR(rbuf, "malloc");
tbuf = (hobj_ref_t *)malloc(MAX(sizeof(unsigned), sizeof(hobj_ref_t)) * SPACE1_DIM1);
CHECK_PTR(tbuf, "malloc");
/* Create file */
fid1 = H5Fcreate(FILE1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fcreate");
/* Create dataspace for datasets */
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
CHECK(sid1, FAIL, "H5Screate_simple");
/* Create dataset access property list */
dapl_id = H5Pcreate(H5P_DATASET_ACCESS);
CHECK(dapl_id, FAIL, "H5Pcreate");
/* Create a group */
group = H5Gcreate2(fid1, "Group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(group, FAIL, "H5Gcreate2");
/* Set group's comment */
ret = H5Oset_comment(group, write_comment);
CHECK(ret, FAIL, "H5Oset_comment");
/* Create a dataset (inside Group1) */
dataset = H5Dcreate2(group, "Dataset1", H5T_NATIVE_UINT, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate2");
for (tu32 = (unsigned *)wbuf, i = 0; i < SPACE1_DIM1; i++)
*tu32++ = (unsigned)i * 3;
/* Write selection to disk */
ret = H5Dwrite(dataset, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wbuf);
CHECK(ret, FAIL, "H5Dwrite");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Create another dataset (inside Group1) */
dataset = H5Dcreate2(group, "Dataset2", H5T_NATIVE_UCHAR, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate2");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Create a datatype to refer to */
tid1 = H5Tcreate(H5T_COMPOUND, sizeof(s1_t));
CHECK(tid1, FAIL, "H5Tcreate");
/* Insert fields */
ret = H5Tinsert(tid1, "a", HOFFSET(s1_t, a), H5T_NATIVE_INT);
CHECK(ret, FAIL, "H5Tinsert");
ret = H5Tinsert(tid1, "b", HOFFSET(s1_t, b), H5T_NATIVE_INT);
CHECK(ret, FAIL, "H5Tinsert");
ret = H5Tinsert(tid1, "c", HOFFSET(s1_t, c), H5T_NATIVE_FLOAT);
CHECK(ret, FAIL, "H5Tinsert");
/* Save datatype for later */
ret = H5Tcommit2(group, "Datatype1", tid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Tcommit2");
/* Close datatype */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
/* Close group */
ret = H5Gclose(group);
CHECK(ret, FAIL, "H5Gclose");
/* Create a dataset */
dataset = H5Dcreate2(fid1, "Dataset3", H5T_STD_REF_OBJ, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Dcreate2");
/* Test parameters to H5Rcreate */
ret = H5Rcreate(NULL, fid1, "/Group1/Dataset1", H5R_OBJECT, (hid_t)H5I_INVALID_HID);
VERIFY(ret, FAIL, "H5Rcreate ref");
ret = H5Rcreate(&wbuf[0], (hid_t)H5I_INVALID_HID, "/Group1/Dataset1", H5R_OBJECT, (hid_t)H5I_INVALID_HID);
VERIFY(ret, FAIL, "H5Rcreate loc_id");
ret = H5Rcreate(&wbuf[0], fid1, NULL, H5R_OBJECT, (hid_t)H5I_INVALID_HID);
VERIFY(ret, FAIL, "H5Rcreate name");
ret = H5Rcreate(&wbuf[0], fid1, "", H5R_OBJECT, (hid_t)H5I_INVALID_HID);
VERIFY(ret, FAIL, "H5Rcreate null name");
ret = H5Rcreate(&wbuf[0], fid1, "/Group1/Dataset1", H5R_MAXTYPE, (hid_t)H5I_INVALID_HID);
VERIFY(ret, FAIL, "H5Rcreate type");
ret = H5Rcreate(&wbuf[0], fid1, "/Group1/Dataset1", H5R_DATASET_REGION, (hid_t)H5I_INVALID_HID);
VERIFY(ret, FAIL, "H5Rcreate region space");
ret = H5Rcreate(&wbuf[0], fid1, "/Group1/Dataset1", H5R_MAXTYPE, (hid_t)0);
VERIFY(ret, FAIL, "H5Rcreate space");
/* Test parameters to H5Rdereference */
dset2 = H5Rdereference2((hid_t)H5I_INVALID_HID, H5P_DEFAULT, H5R_OBJECT, &rbuf[0]);
VERIFY(dset2, FAIL, "H5Rdereference2 loc_id");
dset2 = H5Rdereference2(dataset, (hid_t)H5I_INVALID_HID, H5R_OBJECT, &rbuf[0]);
VERIFY(dset2, FAIL, "H5Rdereference2 oapl_id");
dset2 = H5Rdereference2(dataset, dapl_id, H5R_OBJECT, NULL);
VERIFY(dset2, FAIL, "H5Rdereference2 ref");
dset2 = H5Rdereference2(dataset, dapl_id, H5R_MAXTYPE, &rbuf[0]);
VERIFY(dset2, FAIL, "H5Rdereference2 type");
/* Test parameters to H5Rget_obj_type2 */
ret = H5Rget_obj_type2((hid_t)H5I_INVALID_HID, H5R_OBJECT, &rbuf[0], NULL);
VERIFY(ret, FAIL, "H5Rget_obj_type2 loc_id");
ret = H5Rget_obj_type2(fid1, H5R_OBJECT, NULL, NULL);
VERIFY(ret, FAIL, "H5Rget_obj_type2 ref");
ret = H5Rget_obj_type2(fid1, H5R_MAXTYPE, &rbuf[0], NULL);
VERIFY(ret, FAIL, "H5Rget_obj_type2 type");
/* Test parameters to H5Rget_name */
name_size = H5Rget_name((hid_t)H5I_INVALID_HID, H5R_DATASET_REGION, &rbuf[0], NULL, 0);
VERIFY(name_size, FAIL, "H5Rget_name loc_id");
name_size = H5Rget_name(fid1, H5R_DATASET_REGION, NULL, NULL, 0);
VERIFY(name_size, FAIL, "H5Rget_name ref");
name_size = H5Rget_name(fid1, H5R_MAXTYPE, &rbuf[0], NULL, 0);
VERIFY(name_size, FAIL, "H5Rget_name type");
/* Test parameters to H5Rget_region */
ret_id = H5Rget_region((hid_t)H5I_INVALID_HID, H5R_OBJECT, &rbuf[0]);
VERIFY(ret_id, FAIL, "H5Rget_region loc_id");
ret_id = H5Rget_region(fid1, H5R_OBJECT, NULL);
VERIFY(ret_id, FAIL, "H5Rget_region ref");
ret_id = H5Rget_region(fid1, H5R_OBJECT, &rbuf[0]);
VERIFY(ret_id, FAIL, "H5Rget_region type");
/* Close disk dataspace */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
/* Close dataset access property list */
ret = H5Pclose(dapl_id);
CHECK(ret, FAIL, "H5Pclose");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Free memory buffers */
free(wbuf);
free(rbuf);
free(tbuf);
} /* test_reference_obj() */
/****************************************************************
**
** test_reference_obj(): Test basic H5R (reference) object reference code.
** Tests references to various kinds of objects
**
****************************************************************/
static void
test_reference_obj(void)
{
hid_t fid1; /* HDF5 File IDs */
hid_t dataset, /* Dataset ID */
dset2; /* Dereferenced dataset ID */
hid_t group; /* Group ID */
hid_t sid1; /* Dataspace ID */
hid_t tid1; /* Datatype ID */
hsize_t dims1[] = {SPACE1_DIM1};
hid_t dapl_id; /* Dataset access property list */
hobj_ref_t *wbuf, /* buffer to write to disk */
*rbuf, /* buffer read from disk */
*tbuf; /* temp. buffer read from disk */
hobj_ref_t nvrbuf[3] = {0, 101, 1000000000}; /* buffer with non-valid refs */
unsigned *tu32; /* Temporary pointer to uint32 data */
int i, j; /* counting variables */
const char *write_comment = "Foo!"; /* Comments for group */
char read_comment[10];
H5O_type_t obj_type; /* Object type */
ssize_t size; /* Comment length */
herr_t ret; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing Object Reference Functions\n"));
/* Allocate write & read buffers */
wbuf = (hobj_ref_t *)malloc(MAX(sizeof(unsigned), sizeof(hobj_ref_t)) * SPACE1_DIM1);
CHECK_PTR(wbuf, "malloc");
rbuf = (hobj_ref_t *)malloc(MAX(sizeof(unsigned), sizeof(hobj_ref_t)) * SPACE1_DIM1);
CHECK_PTR(rbuf, "malloc");
tbuf = (hobj_ref_t *)malloc(MAX(sizeof(unsigned), sizeof(hobj_ref_t)) * SPACE1_DIM1);
CHECK_PTR(tbuf, "malloc");
/* Create file */
fid1 = H5Fcreate(FILE1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fcreate");
/* Create dataspace for datasets */
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
CHECK(sid1, FAIL, "H5Screate_simple");
/* Create dataset access property list */
dapl_id = H5Pcreate(H5P_DATASET_ACCESS);
CHECK(dapl_id, FAIL, "H5Pcreate");
/* Create a group */
group = H5Gcreate2(fid1, "Group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(group, FAIL, "H5Gcreate2");
/* Set group's comment */
ret = H5Oset_comment(group, write_comment);
CHECK(ret, FAIL, "H5Oset_comment");
/* Create a dataset (inside Group1) */
dataset = H5Dcreate2(group, "Dataset1", H5T_NATIVE_UINT, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate2");
for (tu32 = (unsigned *)wbuf, i = 0; i < SPACE1_DIM1; i++)
*tu32++ = (unsigned)i * 3;
/* Write selection to disk */
ret = H5Dwrite(dataset, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, wbuf);
CHECK(ret, FAIL, "H5Dwrite");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Create another dataset (inside Group1) */
dataset = H5Dcreate2(group, "Dataset2", H5T_NATIVE_UCHAR, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate2");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Create a datatype to refer to */
tid1 = H5Tcreate(H5T_COMPOUND, sizeof(s1_t));
CHECK(tid1, FAIL, "H5Tcreate");
/* Insert fields */
ret = H5Tinsert(tid1, "a", HOFFSET(s1_t, a), H5T_NATIVE_INT);
CHECK(ret, FAIL, "H5Tinsert");
ret = H5Tinsert(tid1, "b", HOFFSET(s1_t, b), H5T_NATIVE_INT);
CHECK(ret, FAIL, "H5Tinsert");
ret = H5Tinsert(tid1, "c", HOFFSET(s1_t, c), H5T_NATIVE_FLOAT);
CHECK(ret, FAIL, "H5Tinsert");
/* Save datatype for later */
ret = H5Tcommit2(group, "Datatype1", tid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Tcommit2");
/* Close datatype */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
/* Close group */
ret = H5Gclose(group);
CHECK(ret, FAIL, "H5Gclose");
/* Create a dataset */
dataset = H5Dcreate2(fid1, "Dataset3", H5T_STD_REF_OBJ, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate2");
/* Create reference to dataset */
ret = H5Rcreate(&wbuf[0], fid1, "/Group1/Dataset1", H5R_OBJECT, (hid_t)H5I_INVALID_HID);
CHECK(ret, FAIL, "H5Rcreate");
ret = H5Rget_obj_type2(dataset, H5R_OBJECT, &wbuf[0], &obj_type);
CHECK(ret, FAIL, "H5Rget_obj_type2");
VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type2");
/* Create reference to dataset */
ret = H5Rcreate(&wbuf[1], fid1, "/Group1/Dataset2", H5R_OBJECT, (hid_t)H5I_INVALID_HID);
CHECK(ret, FAIL, "H5Rcreate");
ret = H5Rget_obj_type2(dataset, H5R_OBJECT, &wbuf[1], &obj_type);
CHECK(ret, FAIL, "H5Rget_obj_type2");
VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type2");
/* Create reference to group */
ret = H5Rcreate(&wbuf[2], fid1, "/Group1", H5R_OBJECT, (hid_t)H5I_INVALID_HID);
CHECK(ret, FAIL, "H5Rcreate");
ret = H5Rget_obj_type2(dataset, H5R_OBJECT, &wbuf[2], &obj_type);
CHECK(ret, FAIL, "H5Rget_obj_type2");
VERIFY(obj_type, H5O_TYPE_GROUP, "H5Rget_obj_type2");
/* Create reference to named datatype */
ret = H5Rcreate(&wbuf[3], fid1, "/Group1/Datatype1", H5R_OBJECT, (hid_t)H5I_INVALID_HID);
CHECK(ret, FAIL, "H5Rcreate");
ret = H5Rget_obj_type2(dataset, H5R_OBJECT, &wbuf[3], &obj_type);
CHECK(ret, FAIL, "H5Rget_obj_type2");
VERIFY(obj_type, H5O_TYPE_NAMED_DATATYPE, "H5Rget_obj_type2");
/* Write selection to disk */
ret = H5Dwrite(dataset, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, wbuf);
CHECK(ret, FAIL, "H5Dwrite");
/* Close disk dataspace */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Re-open the file */
fid1 = H5Fopen(FILE1, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fopen");
/* Open the dataset */
dataset = H5Dopen2(fid1, "/Dataset3", H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dopen2");
/* Read selection from disk */
ret = H5Dread(dataset, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, rbuf);
CHECK(ret, FAIL, "H5Dread");
/* Open dataset object */
dset2 = H5Rdereference2(dataset, dapl_id, H5R_OBJECT, &rbuf[0]);
CHECK(dset2, FAIL, "H5Rdereference2");
/* Check information in referenced dataset */
sid1 = H5Dget_space(dset2);
CHECK(sid1, FAIL, "H5Dget_space");
ret = (int)H5Sget_simple_extent_npoints(sid1);
VERIFY(ret, 4, "H5Sget_simple_extent_npoints");
/* Read from disk */
ret = H5Dread(dset2, H5T_NATIVE_UINT, H5S_ALL, H5S_ALL, H5P_DEFAULT, tbuf);
CHECK(ret, FAIL, "H5Dread");
for (tu32 = (unsigned *)tbuf, i = 0; i < SPACE1_DIM1; i++, tu32++)
VERIFY(*tu32, (uint32_t)(i * 3), "Data");
/* Close dereferenced Dataset */
ret = H5Dclose(dset2);
CHECK(ret, FAIL, "H5Dclose");
/* Open group object. GAPL isn't supported yet. But it's harmless to pass in */
group = H5Rdereference2(dataset, H5P_DEFAULT, H5R_OBJECT, &rbuf[2]);
CHECK(group, FAIL, "H5Rdereference2");
/* Get group's comment */
size = H5Oget_comment(group, read_comment, (size_t)10);
CHECK(size, FAIL, "H5Oget_comment");
/* Check for correct comment value */
if (strcmp(write_comment, read_comment) != 0)
TestErrPrintf("Error! Incorrect group comment, wanted: %s, got: %s\n", write_comment, read_comment);
/* Close group */
ret = H5Gclose(group);
CHECK(ret, FAIL, "H5Gclose");
/* Open datatype object. TAPL isn't supported yet. But it's harmless to pass in */
tid1 = H5Rdereference2(dataset, H5P_DEFAULT, H5R_OBJECT, &rbuf[3]);
CHECK(tid1, FAIL, "H5Rdereference2");
/* Verify correct datatype */
{
H5T_class_t tclass;
tclass = H5Tget_class(tid1);
VERIFY(tclass, H5T_COMPOUND, "H5Tget_class");
ret = H5Tget_nmembers(tid1);
VERIFY(ret, 3, "H5Tget_nmembers");
}
/* Attempting to retrieve type of object using non-valid refs */
for (j = 0; j < 3; j++) {
H5E_BEGIN_TRY
{
ret = H5Rget_obj_type2(dataset, H5R_OBJECT, &nvrbuf[j], &obj_type);
}
H5E_END_TRY
VERIFY(ret, FAIL, "H5Rget_obj_type2");
} /* end for */
/* Close datatype */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close dataset access property list */
ret = H5Pclose(dapl_id);
CHECK(ret, FAIL, "H5Pclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Free memory buffers */
free(wbuf);
free(rbuf);
free(tbuf);
} /* test_reference_obj() */
/****************************************************************
**
** test_reference_region(): Test basic H5R (reference) object reference code.
** Tests references to various kinds of objects
**
** Note: The libver_low/libver_high parameters are added to create the file
** with the low and high bounds setting in fapl.
** Please see the RFC for "H5Sencode/H5Sdecode Format Change".
**
****************************************************************/
static void
test_reference_region(H5F_libver_t libver_low, H5F_libver_t libver_high)
{
hid_t fid1; /* HDF5 File IDs */
hid_t fapl = H5I_INVALID_HID; /* File access property list */
hid_t dset1, /* Dataset ID */
dset2; /* Dereferenced dataset ID */
hid_t sid1, /* Dataspace ID #1 */
sid2; /* Dataspace ID #2 */
hid_t dapl_id; /* Dataset access property list */
hsize_t dims1[] = {SPACE1_DIM1}, dims2[] = {SPACE2_DIM1, SPACE2_DIM2};
hsize_t start[SPACE2_RANK]; /* Starting location of hyperslab */
hsize_t stride[SPACE2_RANK]; /* Stride of hyperslab */
hsize_t count[SPACE2_RANK]; /* Element count of hyperslab */
hsize_t block[SPACE2_RANK]; /* Block size of hyperslab */
hsize_t coord1[POINT1_NPOINTS][SPACE2_RANK]; /* Coordinates for point selection */
hsize_t *coords; /* Coordinate buffer */
hsize_t low[SPACE2_RANK]; /* Selection bounds */
hsize_t high[SPACE2_RANK]; /* Selection bounds */
hdset_reg_ref_t *wbuf, /* buffer to write to disk */
*rbuf; /* buffer read from disk */
hdset_reg_ref_t nvrbuf[3] = {{{0}}, {{101}}, {{255}}}; /* buffer with non-valid refs */
uint8_t *dwbuf, /* Buffer for writing numeric data to disk */
*drbuf; /* Buffer for reading numeric data from disk */
uint8_t *tu8; /* Temporary pointer to uint8 data */
H5O_type_t obj_type; /* Type of object */
int i, j; /* counting variables */
hssize_t hssize_ret; /* hssize_t return value */
htri_t tri_ret; /* htri_t return value */
herr_t ret; /* Generic return value */
hdset_reg_ref_t undef_reg[1]; /* test for undefined reference */
hid_t dset_NA; /* Dataset id for undefined reference */
hid_t space_NA; /* Dataspace id for undefined reference */
hsize_t dims_NA[1] = {1}; /* Dims array for undefined reference */
hdset_reg_ref_t wdata_NA[1], /* Write buffer */
rdata_NA[1]; /* Read buffer */
/* Output message about test being performed */
MESSAGE(5, ("Testing Dataset Region Reference Functions\n"));
/* Allocate write & read buffers */
wbuf = (hdset_reg_ref_t *)calloc(sizeof(hdset_reg_ref_t), (size_t)SPACE1_DIM1);
rbuf = (hdset_reg_ref_t *)malloc(sizeof(hdset_reg_ref_t) * SPACE1_DIM1);
dwbuf = (uint8_t *)malloc(sizeof(uint8_t) * SPACE2_DIM1 * SPACE2_DIM2);
drbuf = (uint8_t *)calloc(sizeof(uint8_t), (size_t)(SPACE2_DIM1 * SPACE2_DIM2));
/* Create file access property list */
fapl = H5Pcreate(H5P_FILE_ACCESS);
CHECK(fapl, FAIL, "H5Pcreate");
/* Set the low/high version bounds in fapl */
ret = H5Pset_libver_bounds(fapl, libver_low, libver_high);
CHECK(ret, FAIL, "H5Pset_libver_bounds");
/* Create file with the fapl */
fid1 = H5Fcreate(FILE2, H5F_ACC_TRUNC, H5P_DEFAULT, fapl);
CHECK(fid1, FAIL, "H5Fcreate");
/* Create dataspace for datasets */
sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL);
CHECK(sid2, FAIL, "H5Screate_simple");
/* Create dataset access property list */
dapl_id = H5Pcreate(H5P_DATASET_ACCESS);
CHECK(dapl_id, FAIL, "H5Pcreate");
/* Create a dataset */
dset2 = H5Dcreate2(fid1, "Dataset2", H5T_STD_U8LE, sid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dset2, FAIL, "H5Dcreate2");
for (tu8 = dwbuf, i = 0; i < (SPACE2_DIM1 * SPACE2_DIM2); i++)
*tu8++ = (uint8_t)(i * 3);
/* Write selection to disk */
ret = H5Dwrite(dset2, H5T_STD_U8LE, H5S_ALL, H5S_ALL, H5P_DEFAULT, dwbuf);
CHECK(ret, FAIL, "H5Dwrite");
/* Close Dataset */
ret = H5Dclose(dset2);
CHECK(ret, FAIL, "H5Dclose");
/* Create dataspace for the reference dataset */
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
CHECK(sid1, FAIL, "H5Screate_simple");
/* Create a dataset */
dset1 = H5Dcreate2(fid1, "Dataset1", H5T_STD_REF_DSETREG, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dset1, FAIL, "H5Dcreate2");
/* Create references */
/* Select 6x6 hyperslab for first reference */
start[0] = 2;
start[1] = 2;
stride[0] = 1;
stride[1] = 1;
count[0] = 1;
count[1] = 1;
block[0] = 6;
block[1] = 6;
ret = H5Sselect_hyperslab(sid2, H5S_SELECT_SET, start, stride, count, block);
CHECK(ret, FAIL, "H5Sselect_hyperslab");
ret = (int)H5Sget_select_npoints(sid2);
VERIFY(ret, 36, "H5Sget_select_npoints");
/* Store first dataset region */
ret = H5Rcreate(&wbuf[0], fid1, "/Dataset2", H5R_DATASET_REGION, sid2);
CHECK(ret, FAIL, "H5Rcreate");
ret = H5Rget_obj_type2(dset1, H5R_DATASET_REGION, &wbuf[0], &obj_type);
CHECK(ret, FAIL, "H5Rget_obj_type2");
VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type2");
/* Select sequence of ten points for second reference */
coord1[0][0] = 6;
coord1[0][1] = 9;
coord1[1][0] = 2;
coord1[1][1] = 2;
coord1[2][0] = 8;
coord1[2][1] = 4;
coord1[3][0] = 1;
coord1[3][1] = 6;
coord1[4][0] = 2;
coord1[4][1] = 8;
coord1[5][0] = 3;
coord1[5][1] = 2;
coord1[6][0] = 0;
coord1[6][1] = 4;
coord1[7][0] = 9;
coord1[7][1] = 0;
coord1[8][0] = 7;
coord1[8][1] = 1;
coord1[9][0] = 3;
coord1[9][1] = 3;
ret = H5Sselect_elements(sid2, H5S_SELECT_SET, (size_t)POINT1_NPOINTS, (const hsize_t *)coord1);
CHECK(ret, FAIL, "H5Sselect_elements");
ret = (int)H5Sget_select_npoints(sid2);
VERIFY(ret, 10, "H5Sget_select_npoints");
/* Store second dataset region */
ret = H5Rcreate(&wbuf[1], fid1, "/Dataset2", H5R_DATASET_REGION, sid2);
CHECK(ret, FAIL, "H5Rcreate");
/* Select unlimited hyperslab for third reference */
start[0] = 1;
start[1] = 8;
stride[0] = 4;
stride[1] = 1;
count[0] = H5S_UNLIMITED;
count[1] = 1;
block[0] = 2;
block[1] = 2;
ret = H5Sselect_hyperslab(sid2, H5S_SELECT_SET, start, stride, count, block);
CHECK(ret, FAIL, "H5Sselect_hyperslab");
hssize_ret = H5Sget_select_npoints(sid2);
VERIFY(hssize_ret, (hssize_t)H5S_UNLIMITED, "H5Sget_select_npoints");
/* Store third dataset region */
H5E_BEGIN_TRY
{
ret = H5Rcreate(&wbuf[2], fid1, "/Dataset2", H5R_DATASET_REGION, sid2);
}
H5E_END_TRY
if (libver_high < H5F_LIBVER_V110)
VERIFY(ret, FAIL, "H5Rcreate");
else
CHECK(ret, FAIL, "H5Rcreate");
ret = H5Rget_obj_type2(dset1, H5R_DATASET_REGION, &wbuf[0], &obj_type);
CHECK(ret, FAIL, "H5Rget_obj_type2");
VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type2");
/* Write selection to disk */
ret = H5Dwrite(dset1, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, wbuf);
CHECK(ret, FAIL, "H5Dwrite");
/*
* Store a dataset region reference which will not get written to disk
*/
/* Create reference to an element in dset1 */
ret = H5Sselect_elements(sid2, H5S_SELECT_SET, (size_t)1, (const hsize_t *)coord1);
CHECK(ret, FAIL, "H5Sselect_elements");
ret = H5Rcreate(&wdata_NA[0], fid1, "/Dataset1", H5R_DATASET_REGION, sid2);
CHECK(ret, FAIL, "H5Rcreate");
/* Create the dataspace of the region references */
space_NA = H5Screate_simple(1, dims_NA, NULL);
CHECK(space_NA, FAIL, "H5Screate_simple");
/* Create the dataset and write the region references to it */
dset_NA = H5Dcreate2(fid1, "DS_NA", H5T_STD_REF_DSETREG, space_NA, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dset_NA, FAIL, "H5Dcreate");
/* Close and release resources for undefined region reference tests */
ret = H5Dclose(dset_NA);
CHECK(ret, FAIL, "H5Dclose");
ret = H5Sclose(space_NA);
CHECK(ret, FAIL, "H5Sclose");
/* Close disk dataspace */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
/* Close Dataset */
ret = H5Dclose(dset1);
CHECK(ret, FAIL, "H5Dclose");
/* Close uint8 dataset dataspace */
ret = H5Sclose(sid2);
CHECK(ret, FAIL, "H5Sclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Re-open the file */
fid1 = H5Fopen(FILE2, H5F_ACC_RDWR, fapl);
CHECK(fid1, FAIL, "H5Fopen");
/*
* Start the test of an undefined reference
*/
/* Open the dataset of the undefined references */
dset_NA = H5Dopen2(fid1, "DS_NA", H5P_DEFAULT);
CHECK(dset_NA, FAIL, "H5Dopen2");
/* Read the data */
ret = H5Dread(dset_NA, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, rdata_NA);
CHECK(ret, FAIL, "H5Dread");
/*
* Dereference an undefined reference (should fail)
*/
H5E_BEGIN_TRY
{
dset2 = H5Rdereference2(dset_NA, H5P_DEFAULT, H5R_DATASET_REGION, &rdata_NA[0]);
}
H5E_END_TRY
VERIFY(dset2, FAIL, "H5Rdereference2");
/* Close and release resources. */
ret = H5Dclose(dset_NA);
CHECK(ret, FAIL, "H5Dclose");
/* This close should fail since H5Rdereference2 never created
* the id of the referenced object. */
H5E_BEGIN_TRY
{
ret = H5Dclose(dset2);
}
H5E_END_TRY
VERIFY(ret, FAIL, "H5Dclose");
/*
* End the test of an undefined reference
*/
/* Open the dataset */
dset1 = H5Dopen2(fid1, "/Dataset1", H5P_DEFAULT);
CHECK(dset1, FAIL, "H5Dopen2");
/* Read selection from disk */
ret = H5Dread(dset1, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, rbuf);
CHECK(ret, FAIL, "H5Dread");
/* Try to read an unaddressed dataset */
memset(&undef_reg, 0, sizeof(undef_reg));
dset2 = H5Rdereference2(dset1, dapl_id, H5R_DATASET_REGION, undef_reg);
VERIFY(dset2, FAIL, "H5Rdereference2 haddr_undef");
/* Try to open objects */
dset2 = H5Rdereference2(dset1, dapl_id, H5R_DATASET_REGION, &rbuf[0]);
CHECK(dset2, FAIL, "H5Rdereference2");
/* Check what H5Rget_obj_type2 function returns */
ret = H5Rget_obj_type2(dset1, H5R_DATASET_REGION, &rbuf[0], &obj_type);
CHECK(ret, FAIL, "H5Rget_obj_type2");
VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type2");
/* Check information in referenced dataset */
sid1 = H5Dget_space(dset2);
CHECK(sid1, FAIL, "H5Dget_space");
ret = (int)H5Sget_simple_extent_npoints(sid1);
VERIFY(ret, 100, "H5Sget_simple_extent_npoints");
/* Read from disk */
ret = H5Dread(dset2, H5T_STD_U8LE, H5S_ALL, H5S_ALL, H5P_DEFAULT, drbuf);
CHECK(ret, FAIL, "H5Dread");
for (tu8 = (uint8_t *)drbuf, i = 0; i < (SPACE2_DIM1 * SPACE2_DIM2); i++, tu8++)
VERIFY(*tu8, (uint8_t)(i * 3), "Data");
/* Get the hyperslab selection */
sid2 = H5Rget_region(dset1, H5R_DATASET_REGION, &rbuf[0]);
CHECK(sid2, FAIL, "H5Rget_region");
/* Verify correct hyperslab selected */
ret = (int)H5Sget_select_npoints(sid2);
VERIFY(ret, 36, "H5Sget_select_npoints");
ret = (int)H5Sget_select_hyper_nblocks(sid2);
VERIFY(ret, 1, "H5Sget_select_hyper_nblocks");
coords = (hsize_t *)malloc((size_t)ret * SPACE2_RANK * sizeof(hsize_t) *
2); /* allocate space for the hyperslab blocks */
ret = H5Sget_select_hyper_blocklist(sid2, (hsize_t)0, (hsize_t)ret, coords);
CHECK(ret, FAIL, "H5Sget_select_hyper_blocklist");
VERIFY(coords[0], 2, "Hyperslab Coordinates");
VERIFY(coords[1], 2, "Hyperslab Coordinates");
VERIFY(coords[2], 7, "Hyperslab Coordinates");
VERIFY(coords[3], 7, "Hyperslab Coordinates");
free(coords);
ret = H5Sget_select_bounds(sid2, low, high);
CHECK(ret, FAIL, "H5Sget_select_bounds");
VERIFY(low[0], 2, "Selection Bounds");
VERIFY(low[1], 2, "Selection Bounds");
VERIFY(high[0], 7, "Selection Bounds");
VERIFY(high[1], 7, "Selection Bounds");
/* Close region space */
ret = H5Sclose(sid2);
CHECK(ret, FAIL, "H5Sclose");
/* Get the element selection */
sid2 = H5Rget_region(dset1, H5R_DATASET_REGION, &rbuf[1]);
CHECK(sid2, FAIL, "H5Rget_region");
/* Verify correct elements selected */
ret = (int)H5Sget_select_npoints(sid2);
VERIFY(ret, 10, "H5Sget_select_npoints");
ret = (int)H5Sget_select_elem_npoints(sid2);
VERIFY(ret, 10, "H5Sget_select_elem_npoints");
coords = (hsize_t *)malloc((size_t)ret * SPACE2_RANK *
sizeof(hsize_t)); /* allocate space for the element points */
ret = H5Sget_select_elem_pointlist(sid2, (hsize_t)0, (hsize_t)ret, coords);
CHECK(ret, FAIL, "H5Sget_select_elem_pointlist");
VERIFY(coords[0], coord1[0][0], "Element Coordinates");
VERIFY(coords[1], coord1[0][1], "Element Coordinates");
VERIFY(coords[2], coord1[1][0], "Element Coordinates");
VERIFY(coords[3], coord1[1][1], "Element Coordinates");
VERIFY(coords[4], coord1[2][0], "Element Coordinates");
VERIFY(coords[5], coord1[2][1], "Element Coordinates");
VERIFY(coords[6], coord1[3][0], "Element Coordinates");
VERIFY(coords[7], coord1[3][1], "Element Coordinates");
VERIFY(coords[8], coord1[4][0], "Element Coordinates");
VERIFY(coords[9], coord1[4][1], "Element Coordinates");
VERIFY(coords[10], coord1[5][0], "Element Coordinates");
VERIFY(coords[11], coord1[5][1], "Element Coordinates");
VERIFY(coords[12], coord1[6][0], "Element Coordinates");
VERIFY(coords[13], coord1[6][1], "Element Coordinates");
VERIFY(coords[14], coord1[7][0], "Element Coordinates");
VERIFY(coords[15], coord1[7][1], "Element Coordinates");
VERIFY(coords[16], coord1[8][0], "Element Coordinates");
VERIFY(coords[17], coord1[8][1], "Element Coordinates");
VERIFY(coords[18], coord1[9][0], "Element Coordinates");
VERIFY(coords[19], coord1[9][1], "Element Coordinates");
free(coords);
ret = H5Sget_select_bounds(sid2, low, high);
CHECK(ret, FAIL, "H5Sget_select_bounds");
VERIFY(low[0], 0, "Selection Bounds");
VERIFY(low[1], 0, "Selection Bounds");
VERIFY(high[0], 9, "Selection Bounds");
VERIFY(high[1], 9, "Selection Bounds");
/* Close region space */
ret = H5Sclose(sid2);
CHECK(ret, FAIL, "H5Sclose");
if (libver_high >= H5F_LIBVER_V110) {
/* Get the unlimited selection */
sid2 = H5Rget_region(dset1, H5R_DATASET_REGION, &rbuf[2]);
CHECK(sid2, FAIL, "H5Rget_region");
/* Verify correct hyperslab selected */
hssize_ret = H5Sget_select_npoints(sid2);
VERIFY(hssize_ret, (hssize_t)H5S_UNLIMITED, "H5Sget_select_npoints");
tri_ret = H5Sis_regular_hyperslab(sid2);
CHECK(tri_ret, FAIL, "H5Sis_regular_hyperslab");
VERIFY(tri_ret, true, "H5Sis_regular_hyperslab Result");
ret = H5Sget_regular_hyperslab(sid2, start, stride, count, block);
CHECK(ret, FAIL, "H5Sget_regular_hyperslab");
VERIFY(start[0], (hsize_t)1, "Hyperslab Coordinates");
VERIFY(start[1], (hsize_t)8, "Hyperslab Coordinates");
VERIFY(stride[0], (hsize_t)4, "Hyperslab Coordinates");
VERIFY(stride[1], (hsize_t)1, "Hyperslab Coordinates");
VERIFY(count[0], H5S_UNLIMITED, "Hyperslab Coordinates");
VERIFY(count[1], (hsize_t)1, "Hyperslab Coordinates");
VERIFY(block[0], (hsize_t)2, "Hyperslab Coordinates");
VERIFY(block[1], (hsize_t)2, "Hyperslab Coordinates");
/* Close region space */
ret = H5Sclose(sid2);
CHECK(ret, FAIL, "H5Sclose");
}
/* Close first space */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
/* Close dereferenced Dataset */
ret = H5Dclose(dset2);
CHECK(ret, FAIL, "H5Dclose");
/* Attempting to retrieve type of object using non-valid refs */
for (j = 0; j < 3; j++) {
H5E_BEGIN_TRY
{
ret = H5Rget_obj_type2(dset1, H5R_DATASET_REGION, &nvrbuf[j], &obj_type);
}
H5E_END_TRY
VERIFY(ret, FAIL, "H5Rget_obj_type2");
} /* end for */
/* Close Dataset */
ret = H5Dclose(dset1);
CHECK(ret, FAIL, "H5Dclose");
/* Close dataset access property list */
ret = H5Pclose(dapl_id);
CHECK(ret, FAIL, "H5Pclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Free memory buffers */
free(wbuf);
free(rbuf);
free(dwbuf);
free(drbuf);
} /* test_reference_region() */
/****************************************************************
**
** test_reference_region_1D(): Test H5R (reference) object reference code.
** Tests 1-D references to various kinds of objects
**
** Note: The libver_low/libver_high parameters are added to create the file
** with the low and high bounds setting in fapl.
** Please see the RFC for "H5Sencode/H5Sdecode Format Change".
**
****************************************************************/
static void
test_reference_region_1D(H5F_libver_t libver_low, H5F_libver_t libver_high)
{
hid_t fid1; /* HDF5 File IDs */
hid_t fapl = H5I_INVALID_HID; /* File access property list */
hid_t dset1, /* Dataset ID */
dset3; /* Dereferenced dataset ID */
hid_t sid1, /* Dataspace ID #1 */
sid3; /* Dataspace ID #3 */
hid_t dapl_id; /* Dataset access property list */
hsize_t dims1[] = {SPACE1_DIM1}, dims3[] = {SPACE3_DIM1};
hsize_t start[SPACE3_RANK]; /* Starting location of hyperslab */
hsize_t stride[SPACE3_RANK]; /* Stride of hyperslab */
hsize_t count[SPACE3_RANK]; /* Element count of hyperslab */
hsize_t block[SPACE3_RANK]; /* Block size of hyperslab */
hsize_t coord1[POINT1_NPOINTS][SPACE3_RANK]; /* Coordinates for point selection */
hsize_t *coords; /* Coordinate buffer */
hsize_t low[SPACE3_RANK]; /* Selection bounds */
hsize_t high[SPACE3_RANK]; /* Selection bounds */
hdset_reg_ref_t *wbuf, /* buffer to write to disk */
*rbuf; /* buffer read from disk */
uint8_t *dwbuf, /* Buffer for writing numeric data to disk */
*drbuf; /* Buffer for reading numeric data from disk */
uint8_t *tu8; /* Temporary pointer to uint8 data */
H5O_type_t obj_type; /* Object type */
int i; /* counting variables */
herr_t ret; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing 1-D Dataset Region Reference Functions\n"));
/* Allocate write & read buffers */
wbuf = (hdset_reg_ref_t *)calloc(sizeof(hdset_reg_ref_t), (size_t)SPACE1_DIM1);
rbuf = (hdset_reg_ref_t *)malloc(sizeof(hdset_reg_ref_t) * SPACE1_DIM1);
dwbuf = (uint8_t *)malloc(sizeof(uint8_t) * SPACE3_DIM1);
drbuf = (uint8_t *)calloc(sizeof(uint8_t), (size_t)SPACE3_DIM1);
/* Create the file access property list */
fapl = H5Pcreate(H5P_FILE_ACCESS);
CHECK(fapl, FAIL, "H5Pcreate");
/* Set the low/high version bounds in fapl */
ret = H5Pset_libver_bounds(fapl, libver_low, libver_high);
CHECK(ret, FAIL, "H5Pset_libver_bounds");
/* Create file with the fapl */
fid1 = H5Fcreate(FILE2, H5F_ACC_TRUNC, H5P_DEFAULT, fapl);
CHECK(fid1, FAIL, "H5Fcreate");
/* Create dataspace for datasets */
sid3 = H5Screate_simple(SPACE3_RANK, dims3, NULL);
CHECK(sid3, FAIL, "H5Screate_simple");
/* Create dataset access property list */
dapl_id = H5Pcreate(H5P_DATASET_ACCESS);
CHECK(dapl_id, FAIL, "H5Pcreate");
/* Create a dataset */
dset3 = H5Dcreate2(fid1, "Dataset2", H5T_STD_U8LE, sid3, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dset3, FAIL, "H5Dcreate2");
for (tu8 = dwbuf, i = 0; i < SPACE3_DIM1; i++)
*tu8++ = (uint8_t)(i * 3);
/* Write selection to disk */
ret = H5Dwrite(dset3, H5T_STD_U8LE, H5S_ALL, H5S_ALL, H5P_DEFAULT, dwbuf);
CHECK(ret, FAIL, "H5Dwrite");
/* Close Dataset */
ret = H5Dclose(dset3);
CHECK(ret, FAIL, "H5Dclose");
/* Create dataspace for the reference dataset */
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
CHECK(sid1, FAIL, "H5Screate_simple");
/* Create a dataset */
dset1 = H5Dcreate2(fid1, "Dataset1", H5T_STD_REF_DSETREG, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Dcreate2");
/* Create references */
/* Select 15 2x1 hyperslabs for first reference */
start[0] = 2;
stride[0] = 5;
count[0] = 15;
block[0] = 2;
ret = H5Sselect_hyperslab(sid3, H5S_SELECT_SET, start, stride, count, block);
CHECK(ret, FAIL, "H5Sselect_hyperslab");
ret = (int)H5Sget_select_npoints(sid3);
VERIFY(ret, 30, "H5Sget_select_npoints");
/* Store first dataset region */
ret = H5Rcreate(&wbuf[0], fid1, "/Dataset2", H5R_DATASET_REGION, sid3);
CHECK(ret, FAIL, "H5Rcreate");
ret = H5Rget_obj_type2(dset1, H5R_DATASET_REGION, &wbuf[0], &obj_type);
CHECK(ret, FAIL, "H5Rget_obj_type2");
VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type2");
/* Select sequence of ten points for second reference */
coord1[0][0] = 16;
coord1[1][0] = 22;
coord1[2][0] = 38;
coord1[3][0] = 41;
coord1[4][0] = 52;
coord1[5][0] = 63;
coord1[6][0] = 70;
coord1[7][0] = 89;
coord1[8][0] = 97;
coord1[9][0] = 03;
ret = H5Sselect_elements(sid3, H5S_SELECT_SET, (size_t)POINT1_NPOINTS, (const hsize_t *)coord1);
CHECK(ret, FAIL, "H5Sselect_elements");
ret = (int)H5Sget_select_npoints(sid3);
VERIFY(ret, 10, "H5Sget_select_npoints");
/* Store second dataset region */
ret = H5Rcreate(&wbuf[1], fid1, "/Dataset2", H5R_DATASET_REGION, sid3);
CHECK(ret, FAIL, "H5Rcreate");
/* Write selection to disk */
ret = H5Dwrite(dset1, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, wbuf);
CHECK(ret, FAIL, "H5Dwrite");
/* Close disk dataspace */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
/* Close Dataset */
ret = H5Dclose(dset1);
CHECK(ret, FAIL, "H5Dclose");
/* Close uint8 dataset dataspace */
ret = H5Sclose(sid3);
CHECK(ret, FAIL, "H5Sclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Re-open the file */
fid1 = H5Fopen(FILE2, H5F_ACC_RDWR, fapl);
CHECK(fid1, FAIL, "H5Fopen");
/* Open the dataset */
dset1 = H5Dopen2(fid1, "/Dataset1", H5P_DEFAULT);
CHECK(dset1, FAIL, "H5Dopen2");
/* Read selection from disk */
ret = H5Dread(dset1, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, rbuf);
CHECK(ret, FAIL, "H5Dread");
/* Try to open objects */
dset3 = H5Rdereference2(dset1, dapl_id, H5R_DATASET_REGION, &rbuf[0]);
CHECK(dset3, FAIL, "H5Rdereference2");
/* Check what H5Rget_obj_type2 function returns */
ret = H5Rget_obj_type2(dset1, H5R_DATASET_REGION, &rbuf[0], &obj_type);
CHECK(ret, FAIL, "H5Rget_obj_type2");
VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type2");
/* Check information in referenced dataset */
sid1 = H5Dget_space(dset3);
CHECK(sid1, FAIL, "H5Dget_space");
ret = (int)H5Sget_simple_extent_npoints(sid1);
VERIFY(ret, 100, "H5Sget_simple_extent_npoints");
/* Read from disk */
ret = H5Dread(dset3, H5T_STD_U8LE, H5S_ALL, H5S_ALL, H5P_DEFAULT, drbuf);
CHECK(ret, FAIL, "H5Dread");
for (tu8 = (uint8_t *)drbuf, i = 0; i < SPACE3_DIM1; i++, tu8++)
VERIFY(*tu8, (uint8_t)(i * 3), "Data");
/* Get the hyperslab selection */
sid3 = H5Rget_region(dset1, H5R_DATASET_REGION, &rbuf[0]);
CHECK(sid3, FAIL, "H5Rget_region");
/* Verify correct hyperslab selected */
ret = (int)H5Sget_select_npoints(sid3);
VERIFY(ret, 30, "H5Sget_select_npoints");
ret = (int)H5Sget_select_hyper_nblocks(sid3);
VERIFY(ret, 15, "H5Sget_select_hyper_nblocks");
coords = (hsize_t *)malloc((size_t)ret * SPACE3_RANK * sizeof(hsize_t) *
2); /* allocate space for the hyperslab blocks */
ret = H5Sget_select_hyper_blocklist(sid3, (hsize_t)0, (hsize_t)ret, coords);
CHECK(ret, FAIL, "H5Sget_select_hyper_blocklist");
VERIFY(coords[0], 2, "Hyperslab Coordinates");
VERIFY(coords[1], 3, "Hyperslab Coordinates");
VERIFY(coords[2], 7, "Hyperslab Coordinates");
VERIFY(coords[3], 8, "Hyperslab Coordinates");
VERIFY(coords[4], 12, "Hyperslab Coordinates");
VERIFY(coords[5], 13, "Hyperslab Coordinates");
VERIFY(coords[6], 17, "Hyperslab Coordinates");
VERIFY(coords[7], 18, "Hyperslab Coordinates");
VERIFY(coords[8], 22, "Hyperslab Coordinates");
VERIFY(coords[9], 23, "Hyperslab Coordinates");
VERIFY(coords[10], 27, "Hyperslab Coordinates");
VERIFY(coords[11], 28, "Hyperslab Coordinates");
VERIFY(coords[12], 32, "Hyperslab Coordinates");
VERIFY(coords[13], 33, "Hyperslab Coordinates");
VERIFY(coords[14], 37, "Hyperslab Coordinates");
VERIFY(coords[15], 38, "Hyperslab Coordinates");
VERIFY(coords[16], 42, "Hyperslab Coordinates");
VERIFY(coords[17], 43, "Hyperslab Coordinates");
VERIFY(coords[18], 47, "Hyperslab Coordinates");
VERIFY(coords[19], 48, "Hyperslab Coordinates");
VERIFY(coords[20], 52, "Hyperslab Coordinates");
VERIFY(coords[21], 53, "Hyperslab Coordinates");
VERIFY(coords[22], 57, "Hyperslab Coordinates");
VERIFY(coords[23], 58, "Hyperslab Coordinates");
VERIFY(coords[24], 62, "Hyperslab Coordinates");
VERIFY(coords[25], 63, "Hyperslab Coordinates");
VERIFY(coords[26], 67, "Hyperslab Coordinates");
VERIFY(coords[27], 68, "Hyperslab Coordinates");
VERIFY(coords[28], 72, "Hyperslab Coordinates");
VERIFY(coords[29], 73, "Hyperslab Coordinates");
free(coords);
ret = H5Sget_select_bounds(sid3, low, high);
CHECK(ret, FAIL, "H5Sget_select_bounds");
VERIFY(low[0], 2, "Selection Bounds");
VERIFY(high[0], 73, "Selection Bounds");
/* Close region space */
ret = H5Sclose(sid3);
CHECK(ret, FAIL, "H5Sclose");
/* Get the element selection */
sid3 = H5Rget_region(dset1, H5R_DATASET_REGION, &rbuf[1]);
CHECK(sid3, FAIL, "H5Rget_region");
/* Verify correct elements selected */
ret = (int)H5Sget_select_npoints(sid3);
VERIFY(ret, 10, "H5Sget_select_npoints");
ret = (int)H5Sget_select_elem_npoints(sid3);
VERIFY(ret, 10, "H5Sget_select_elem_npoints");
coords = (hsize_t *)malloc((size_t)ret * SPACE3_RANK *
sizeof(hsize_t)); /* allocate space for the element points */
ret = H5Sget_select_elem_pointlist(sid3, (hsize_t)0, (hsize_t)ret, coords);
CHECK(ret, FAIL, "H5Sget_select_elem_pointlist");
VERIFY(coords[0], coord1[0][0], "Element Coordinates");
VERIFY(coords[1], coord1[1][0], "Element Coordinates");
VERIFY(coords[2], coord1[2][0], "Element Coordinates");
VERIFY(coords[3], coord1[3][0], "Element Coordinates");
VERIFY(coords[4], coord1[4][0], "Element Coordinates");
VERIFY(coords[5], coord1[5][0], "Element Coordinates");
VERIFY(coords[6], coord1[6][0], "Element Coordinates");
VERIFY(coords[7], coord1[7][0], "Element Coordinates");
VERIFY(coords[8], coord1[8][0], "Element Coordinates");
VERIFY(coords[9], coord1[9][0], "Element Coordinates");
free(coords);
ret = H5Sget_select_bounds(sid3, low, high);
CHECK(ret, FAIL, "H5Sget_select_bounds");
VERIFY(low[0], 3, "Selection Bounds");
VERIFY(high[0], 97, "Selection Bounds");
/* Close region space */
ret = H5Sclose(sid3);
CHECK(ret, FAIL, "H5Sclose");
/* Close first space */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
/* Close dereferenced Dataset */
ret = H5Dclose(dset3);
CHECK(ret, FAIL, "H5Dclose");
/* Close Dataset */
ret = H5Dclose(dset1);
CHECK(ret, FAIL, "H5Dclose");
/* Close dataset access property list */
ret = H5Pclose(dapl_id);
CHECK(ret, FAIL, "H5Pclose");
/* Close file access property list */
ret = H5Pclose(fapl);
CHECK(ret, FAIL, "H5Pclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Free memory buffers */
free(wbuf);
free(rbuf);
free(dwbuf);
free(drbuf);
} /* test_reference_region_1D() */
/****************************************************************
**
** test_reference_obj_deleted(): Test H5R (reference) object reference code.
** Tests for correct failures for deleted and non-existent objects
**
****************************************************************/
static void
test_reference_obj_deleted(void)
{
hid_t fid1; /* HDF5 File IDs */
hid_t dataset, /* Dataset ID */
dset2; /* Dereferenced dataset ID */
hid_t sid1; /* Dataspace ID */
hobj_ref_t oref; /* Object Reference to test */
H5O_type_t obj_type; /* Object type */
haddr_t addr = HADDR_UNDEF; /* test for undefined reference */
herr_t ret; /* Generic return value */
/* Create file */
fid1 = H5Fcreate(FILE3, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fcreate");
/* Create scalar dataspace for datasets */
sid1 = H5Screate_simple(0, NULL, NULL);
CHECK(sid1, FAIL, "H5Screate_simple");
/* Create a dataset to reference (deleted later) */
dataset = H5Dcreate2(fid1, "Dataset1", H5T_NATIVE_INT, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate2");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Create a dataset */
dataset = H5Dcreate2(fid1, "Dataset2", H5T_STD_REF_OBJ, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate2");
/* Create reference to dataset */
ret = H5Rcreate(&oref, fid1, "/Dataset1", H5R_OBJECT, (hid_t)H5I_INVALID_HID);
CHECK(ret, FAIL, "H5Rcreate");
ret = H5Rget_obj_type2(dataset, H5R_OBJECT, &oref, &obj_type);
CHECK(ret, FAIL, "H5Rget_obj_type2");
VERIFY(obj_type, H5O_TYPE_DATASET, "H5Rget_obj_type2");
/* Write selection to disk */
ret = H5Dwrite(dataset, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, &oref);
CHECK(ret, FAIL, "H5Dwrite");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Delete referenced dataset */
ret = H5Ldelete(fid1, "/Dataset1", H5P_DEFAULT);
CHECK(ret, FAIL, "H5Ldelete");
/* Close disk dataspace */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Re-open the file */
fid1 = H5Fopen(FILE3, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fopen");
/* Open the dataset */
dataset = H5Dopen2(fid1, "/Dataset2", H5P_DEFAULT);
CHECK(ret, FAIL, "H5Dopen2");
/* Open undefined reference */
dset2 = H5Rdereference2(dataset, H5P_DEFAULT, H5R_OBJECT, &addr);
VERIFY(dset2, FAIL, "H5Rdereference2");
/* Read selection from disk */
memset(&oref, 0, sizeof(hobj_ref_t));
ret = H5Dread(dataset, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, &oref);
CHECK(ret, FAIL, "H5Dread");
/* Open deleted dataset object */
dset2 = H5Rdereference2(dataset, H5P_DEFAULT, H5R_OBJECT, &oref);
VERIFY(dset2, FAIL, "H5Rdereference2");
/* Open nonsense reference */
memset(&oref, 0, sizeof(hobj_ref_t));
dset2 = H5Rdereference2(dataset, H5P_DEFAULT, H5R_OBJECT, &oref);
VERIFY(dset2, FAIL, "H5Rdereference2");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
} /* test_reference_obj_deleted() */
/****************************************************************
**
** test_deref_iter_op(): Iterator callback for test_reference_group_iterate()
** test.
**
****************************************************************/
static herr_t
test_deref_iter_op(hid_t H5_ATTR_UNUSED group, const char *name, const H5L_info2_t H5_ATTR_UNUSED *info,
void *op_data)
{
int *count = (int *)op_data; /* Pointer to name counter */
herr_t ret_value;
/* Simple check for correct names */
if (*count == 0) {
if (strcmp(name, DSETNAME2) == 0)
ret_value = 0;
else
ret_value = -1;
} /* end if */
else if (*count == 1) {
if (strcmp(name, GROUPNAME2) == 0)
ret_value = 0;
else
ret_value = -1;
} /* end if */
else if (*count == 2) {
if (strcmp(name, GROUPNAME3) == 0)
ret_value = 0;
else
ret_value = -1;
} /* end if */
else
ret_value = -1;
(*count)++;
return (ret_value);
} /* end test_deref_iter_op() */
/****************************************************************
**
** test_reference_group(): Test H5R (reference) object reference code.
** Tests for correct behavior of various routines on dereferenced group
**
****************************************************************/
static void
test_reference_group(void)
{
hid_t fid = H5I_INVALID_HID; /* File ID */
hid_t gid = H5I_INVALID_HID, gid2 = H5I_INVALID_HID; /* Group IDs */
hid_t did; /* Dataset ID */
hid_t sid; /* Dataspace ID */
hobj_ref_t wref; /* Reference to write */
hobj_ref_t rref; /* Reference to read */
H5G_info_t ginfo; /* Group info struct */
char objname[NAME_SIZE]; /* Buffer to store name */
H5O_info2_t oinfo; /* Object info struct */
int count = 0; /* Count within iterated group */
ssize_t size; /* Name length */
herr_t ret;
/* Create file with a group and a dataset containing an object reference to the group */
fid = H5Fcreate(FILE1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid, FAIL, "H5Fcreate");
/* Create dataspace to use for dataset */
sid = H5Screate(H5S_SCALAR);
CHECK(sid, FAIL, "H5Screate");
/* Create group to refer to */
gid = H5Gcreate2(fid, GROUPNAME, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(gid, FAIL, "H5Gcreate2");
/* Create nested groups */
gid2 = H5Gcreate2(gid, GROUPNAME2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(gid2, FAIL, "H5Gcreate2");
ret = H5Gclose(gid2);
CHECK(ret, FAIL, "H5Gclose");
gid2 = H5Gcreate2(gid, GROUPNAME3, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(gid2, FAIL, "H5Gcreate2");
ret = H5Gclose(gid2);
CHECK(ret, FAIL, "H5Gclose");
/* Create bottom dataset */
did = H5Dcreate2(gid, DSETNAME2, H5T_NATIVE_INT, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
assert(did > 0);
ret = H5Dclose(did);
assert(ret >= 0);
ret = H5Gclose(gid);
CHECK(ret, FAIL, "H5Gclose");
/* Create dataset */
did = H5Dcreate2(fid, DSETNAME, H5T_STD_REF_OBJ, sid, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(did, FAIL, "H5Dcreate2");
/* Create reference to group */
ret = H5Rcreate(&wref, fid, GROUPNAME, H5R_OBJECT, (hid_t)H5I_INVALID_HID);
CHECK(ret, FAIL, "H5Rcreate");
/* Write reference to disk */
ret = H5Dwrite(did, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, &wref);
CHECK(ret, FAIL, "H5Dwrite");
/* Close objects */
ret = H5Dclose(did);
CHECK(ret, FAIL, "H5Dclose");
ret = H5Sclose(sid);
CHECK(ret, FAIL, "H5Sclose");
ret = H5Fclose(fid);
CHECK(ret, FAIL, "H5Fclose");
/* Re-open file */
fid = H5Fopen(FILE1, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK(fid, FAIL, "H5Fopen");
/* Re-open dataset */
did = H5Dopen2(fid, DSETNAME, H5P_DEFAULT);
CHECK(did, FAIL, "H5Dopen2");
/* Read in the reference */
ret = H5Dread(did, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, &rref);
CHECK(ret, FAIL, "H5Dread");
/* Dereference to get the group */
gid = H5Rdereference2(did, H5P_DEFAULT, H5R_OBJECT, &rref);
CHECK(gid, FAIL, "H5Rdereference2");
/* Iterate through objects in dereferenced group */
ret = H5Literate2(gid, H5_INDEX_NAME, H5_ITER_INC, NULL, test_deref_iter_op, &count);
CHECK(ret, FAIL, "H5Literate");
/* Various queries on the group opened */
ret = H5Gget_info(gid, &ginfo);
CHECK(ret, FAIL, "H5Gget_info");
VERIFY(ginfo.nlinks, 3, "H5Gget_info");
size = H5Lget_name_by_idx(gid, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)0, objname, (size_t)NAME_SIZE,
H5P_DEFAULT);
CHECK(size, FAIL, "H5Lget_name_by_idx");
VERIFY_STR(objname, DSETNAME2, "H5Lget_name_by_idx");
ret = H5Oget_info_by_idx3(gid, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)0, &oinfo, H5O_INFO_BASIC,
H5P_DEFAULT);
CHECK(ret, FAIL, "H5Oget_info_by_idx3");
VERIFY(oinfo.type, H5O_TYPE_DATASET, "H5Oget_info_by_idx3");
/* Unlink one of the objects in the dereferenced group */
ret = H5Ldelete(gid, GROUPNAME2, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Ldelete");
/* Delete dataset object in dereferenced group (with other dataset still open) */
ret = H5Ldelete(gid, DSETNAME2, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Ldelete");
/* Close objects */
ret = H5Dclose(did);
CHECK(ret, FAIL, "H5Dclose");
ret = H5Gclose(gid);
CHECK(ret, FAIL, "H5Gclose");
ret = H5Fclose(fid);
CHECK(ret, FAIL, "H5Fclose");
} /* test_reference_group() */
#ifndef H5_NO_DEPRECATED_SYMBOLS
/****************************************************************
**
** test_reference_compat(): Test basic H5R (reference) object reference code.
** Tests deprecated API routines
**
****************************************************************/
static void
test_reference_compat(void)
{
hid_t fid1; /* HDF5 File IDs */
hid_t dataset, dset2; /* Dataset ID */
hid_t group, group2; /* Group ID */
hid_t sid1, /* Dataspace IDs */
sid2;
hid_t tid1, tid2; /* Datatype ID */
hsize_t dims1[] = {SPACE1_DIM1}, dims2[] = {SPACE2_DIM1, SPACE2_DIM2};
hsize_t start[SPACE2_RANK]; /* Starting location of hyperslab */
hsize_t stride[SPACE2_RANK]; /* Stride of hyperslab */
hsize_t count[SPACE2_RANK]; /* Element count of hyperslab */
hsize_t block[SPACE2_RANK]; /* Block size of hyperslab */
hsize_t coord1[POINT1_NPOINTS][SPACE2_RANK]; /* Coordinates for point selection */
hobj_ref_t *wbuf_obj, /* Buffer to write to disk */
*rbuf_obj; /* Buffer read from disk */
hdset_reg_ref_t *wbuf_reg, /* Buffer to write to disk */
*rbuf_reg; /* Buffer read from disk */
H5G_obj_t obj_type; /* Object type */
herr_t ret; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing Deprecated Object Reference Functions\n"));
/* Allocate write & read buffers */
wbuf_obj = (hobj_ref_t *)calloc(sizeof(hobj_ref_t), SPACE1_DIM1);
rbuf_obj = (hobj_ref_t *)malloc(sizeof(hobj_ref_t) * SPACE1_DIM1);
wbuf_reg = (hdset_reg_ref_t *)calloc(sizeof(hdset_reg_ref_t), SPACE1_DIM1);
rbuf_reg = (hdset_reg_ref_t *)malloc(sizeof(hdset_reg_ref_t) * SPACE1_DIM1);
/* Create file */
fid1 = H5Fcreate(FILE1, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fcreate");
/* Create dataspace for datasets */
sid1 = H5Screate_simple(SPACE1_RANK, dims1, NULL);
CHECK(sid1, FAIL, "H5Screate_simple");
/* Create another dataspace for datasets */
sid2 = H5Screate_simple(SPACE2_RANK, dims2, NULL);
CHECK(sid2, FAIL, "H5Screate_simple");
/* Create a group */
group = H5Gcreate2(fid1, "Group1", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(group, FAIL, "H5Gcreate2");
/* Create a dataset (inside Group1) */
dataset = H5Dcreate2(group, "Dataset1", H5T_NATIVE_UINT, sid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate2");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Create another dataset (inside Group1) */
dataset = H5Dcreate2(group, "Dataset2", H5T_NATIVE_UCHAR, sid2, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate2");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Create a datatype to refer to */
tid1 = H5Tcreate(H5T_COMPOUND, sizeof(s1_t));
CHECK(tid1, FAIL, "H5Tcreate");
/* Insert fields */
ret = H5Tinsert(tid1, "a", HOFFSET(s1_t, a), H5T_NATIVE_INT);
CHECK(ret, FAIL, "H5Tinsert");
ret = H5Tinsert(tid1, "b", HOFFSET(s1_t, b), H5T_NATIVE_INT);
CHECK(ret, FAIL, "H5Tinsert");
ret = H5Tinsert(tid1, "c", HOFFSET(s1_t, c), H5T_NATIVE_FLOAT);
CHECK(ret, FAIL, "H5Tinsert");
/* Save datatype for later */
ret = H5Tcommit2(group, "Datatype1", tid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Tcommit2");
/* Close datatype */
ret = H5Tclose(tid1);
CHECK(ret, FAIL, "H5Tclose");
/* Close group */
ret = H5Gclose(group);
CHECK(ret, FAIL, "H5Gclose");
/* Create a dataset with object reference datatype */
dataset = H5Dcreate2(fid1, "Dataset3", H5T_STD_REF_OBJ, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate2");
/* Create reference to dataset */
ret = H5Rcreate(&wbuf_obj[0], fid1, "/Group1/Dataset1", H5R_OBJECT, (hid_t)H5I_INVALID_HID);
CHECK(ret, FAIL, "H5Rcreate");
/* Create reference to dataset */
ret = H5Rcreate(&wbuf_obj[1], fid1, "/Group1/Dataset2", H5R_OBJECT, (hid_t)H5I_INVALID_HID);
CHECK(ret, FAIL, "H5Rcreate");
/* Create reference to group */
ret = H5Rcreate(&wbuf_obj[2], fid1, "/Group1", H5R_OBJECT, (hid_t)H5I_INVALID_HID);
CHECK(ret, FAIL, "H5Rcreate");
/* Create reference to named datatype */
ret = H5Rcreate(&wbuf_obj[3], fid1, "/Group1/Datatype1", H5R_OBJECT, (hid_t)H5I_INVALID_HID);
CHECK(ret, FAIL, "H5Rcreate");
/* Write references to disk */
ret = H5Dwrite(dataset, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, wbuf_obj);
CHECK(ret, FAIL, "H5Dwrite");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Create a dataset with region reference datatype */
dataset = H5Dcreate2(fid1, "Dataset4", H5T_STD_REF_DSETREG, sid1, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate2");
/* Select 6x6 hyperslab for first reference */
start[0] = 2;
start[1] = 2;
stride[0] = 1;
stride[1] = 1;
count[0] = 1;
count[1] = 1;
block[0] = 6;
block[1] = 6;
ret = H5Sselect_hyperslab(sid2, H5S_SELECT_SET, start, stride, count, block);
CHECK(ret, FAIL, "H5Sselect_hyperslab");
/* Create first dataset region */
ret = H5Rcreate(&wbuf_reg[0], fid1, "/Group1/Dataset1", H5R_DATASET_REGION, sid2);
CHECK(ret, FAIL, "H5Rcreate");
/* Select sequence of ten points for second reference */
coord1[0][0] = 6;
coord1[0][1] = 9;
coord1[1][0] = 2;
coord1[1][1] = 2;
coord1[2][0] = 8;
coord1[2][1] = 4;
coord1[3][0] = 1;
coord1[3][1] = 6;
coord1[4][0] = 2;
coord1[4][1] = 8;
coord1[5][0] = 3;
coord1[5][1] = 2;
coord1[6][0] = 0;
coord1[6][1] = 4;
coord1[7][0] = 9;
coord1[7][1] = 0;
coord1[8][0] = 7;
coord1[8][1] = 1;
coord1[9][0] = 3;
coord1[9][1] = 3;
ret = H5Sselect_elements(sid2, H5S_SELECT_SET, (size_t)POINT1_NPOINTS, (const hsize_t *)coord1);
CHECK(ret, FAIL, "H5Sselect_elements");
/* Create second dataset region */
ret = H5Rcreate(&wbuf_reg[1], fid1, "/Group1/Dataset2", H5R_DATASET_REGION, sid2);
CHECK(ret, FAIL, "H5Rcreate");
/* Write selection to disk */
ret = H5Dwrite(dataset, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, wbuf_reg);
CHECK(ret, FAIL, "H5Dwrite");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close disk dataspaces */
ret = H5Sclose(sid1);
CHECK(ret, FAIL, "H5Sclose");
ret = H5Sclose(sid2);
CHECK(ret, FAIL, "H5Sclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Re-open the file */
fid1 = H5Fopen(FILE1, H5F_ACC_RDWR, H5P_DEFAULT);
CHECK(fid1, FAIL, "H5Fopen");
/* Open the object reference dataset */
dataset = H5Dopen2(fid1, "/Dataset3", H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dopen2");
/* Read selection from disk */
ret = H5Dread(dataset, H5T_STD_REF_OBJ, H5S_ALL, H5S_ALL, H5P_DEFAULT, rbuf_obj);
CHECK(ret, FAIL, "H5Dread");
/* Verify type of objects pointed at */
obj_type = H5Rget_obj_type1(dataset, H5R_OBJECT, &rbuf_obj[0]);
CHECK(obj_type, H5G_UNKNOWN, "H5Rget_obj_type1");
VERIFY(obj_type, H5G_DATASET, "H5Rget_obj_type1");
obj_type = H5Rget_obj_type1(dataset, H5R_OBJECT, &rbuf_obj[1]);
CHECK(obj_type, H5G_UNKNOWN, "H5Rget_obj_type1");
VERIFY(obj_type, H5G_DATASET, "H5Rget_obj_type1");
obj_type = H5Rget_obj_type1(dataset, H5R_OBJECT, &rbuf_obj[2]);
CHECK(obj_type, H5G_UNKNOWN, "H5Rget_obj_type1");
VERIFY(obj_type, H5G_GROUP, "H5Rget_obj_type1");
obj_type = H5Rget_obj_type1(dataset, H5R_OBJECT, &rbuf_obj[3]);
CHECK(obj_type, H5G_UNKNOWN, "H5Rget_obj_type1");
VERIFY(obj_type, H5G_TYPE, "H5Rget_obj_type1");
/* Make sure the referenced objects can be opened */
dset2 = H5Rdereference1(dataset, H5R_OBJECT, &rbuf_obj[0]);
CHECK(dset2, FAIL, "H5Rdereference1");
ret = H5Dclose(dset2);
CHECK(ret, FAIL, "H5Dclose");
dset2 = H5Rdereference1(dataset, H5R_OBJECT, &rbuf_obj[1]);
CHECK(dset2, FAIL, "H5Rdereference1");
ret = H5Dclose(dset2);
CHECK(ret, FAIL, "H5Dclose");
group2 = H5Rdereference1(dataset, H5R_OBJECT, &rbuf_obj[2]);
CHECK(group2, FAIL, "H5Rdereference1");
ret = H5Gclose(group2);
CHECK(ret, FAIL, "H5Gclose");
tid2 = H5Rdereference1(dataset, H5R_OBJECT, &rbuf_obj[3]);
CHECK(tid2, FAIL, "H5Rdereference1");
ret = H5Tclose(tid2);
CHECK(ret, FAIL, "H5Tclose");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Open the dataset region reference dataset */
dataset = H5Dopen2(fid1, "/Dataset4", H5P_DEFAULT);
CHECK(ret, FAIL, "H5Dopen2");
/* Read selection from disk */
ret = H5Dread(dataset, H5T_STD_REF_DSETREG, H5S_ALL, H5S_ALL, H5P_DEFAULT, rbuf_reg);
CHECK(ret, FAIL, "H5Dread");
/* Verify type of objects pointed at */
obj_type = H5Rget_obj_type1(dataset, H5R_DATASET_REGION, &rbuf_reg[0]);
CHECK(obj_type, H5G_UNKNOWN, "H5Rget_obj_type1");
VERIFY(obj_type, H5G_DATASET, "H5Rget_obj_type1");
obj_type = H5Rget_obj_type1(dataset, H5R_DATASET_REGION, &rbuf_reg[1]);
CHECK(obj_type, H5G_UNKNOWN, "H5Rget_obj_type1");
VERIFY(obj_type, H5G_DATASET, "H5Rget_obj_type1");
obj_type = H5Rget_obj_type1(dataset, H5R_DATASET_REGION, &rbuf_reg[2]);
VERIFY(obj_type, H5G_UNKNOWN, "H5Rget_obj_type1");
obj_type = H5Rget_obj_type1(dataset, H5R_DATASET_REGION, &rbuf_reg[3]);
VERIFY(obj_type, H5G_UNKNOWN, "H5Rget_obj_type1");
/* Make sure the referenced objects can be opened */
dset2 = H5Rdereference1(dataset, H5R_DATASET_REGION, &rbuf_reg[0]);
CHECK(dset2, FAIL, "H5Rdereference1");
ret = H5Dclose(dset2);
CHECK(ret, FAIL, "H5Dclose");
dset2 = H5Rdereference1(dataset, H5R_DATASET_REGION, &rbuf_reg[1]);
CHECK(dset2, FAIL, "H5Rdereference1");
ret = H5Dclose(dset2);
CHECK(ret, FAIL, "H5Dclose");
/* Close Dataset */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Close file */
ret = H5Fclose(fid1);
CHECK(ret, FAIL, "H5Fclose");
/* Free memory buffers */
free(wbuf_obj);
free(rbuf_obj);
free(wbuf_reg);
free(rbuf_reg);
} /* test_reference_compat() */
#endif /* H5_NO_DEPRECATED_SYMBOLS */
/****************************************************************
**
** test_reference_deprec(): Main H5R reference testing routine.
**
****************************************************************/
void
test_reference_deprec(void)
{
H5F_libver_t low, high; /* Low and high bounds */
bool vol_is_native;
/* Output message about test being performed */
MESSAGE(5, ("Testing Deprecated References\n"));
/* Check if native VOL is being used */
CHECK(h5_using_native_vol(H5P_DEFAULT, H5I_INVALID_HID, &vol_is_native), FAIL, "h5_using_native_vol");
if (!vol_is_native) {
MESSAGE(5, (" -- SKIPPED --\n"));
return;
}
test_reference_params(); /* Test for correct parameter checking */
test_reference_obj(); /* Test basic H5R object reference code */
/* Loop through all the combinations of low/high version bounds */
for (low = H5F_LIBVER_EARLIEST; low < H5F_LIBVER_NBOUNDS; low++) {
for (high = H5F_LIBVER_EARLIEST; high < H5F_LIBVER_NBOUNDS; high++) {
/* Invalid combinations, just continue */
if (high == H5F_LIBVER_EARLIEST || high < low)
continue;
test_reference_region(low, high); /* Test basic H5R dataset region reference code */
test_reference_region_1D(low, high); /* Test H5R dataset region reference code for 1-D datasets */
} /* end high bound */
} /* end low bound */
test_reference_obj_deleted(); /* Test H5R object reference code for deleted objects */
test_reference_group(); /* Test operations on dereferenced groups */
#ifndef H5_NO_DEPRECATED_SYMBOLS
test_reference_compat(); /* Test operations with old API routines */
#endif /* H5_NO_DEPRECATED_SYMBOLS */
} /* test_reference() */
/*-------------------------------------------------------------------------
* Function: cleanup_reference
*
* Purpose: Cleanup temporary test files
*
* Return: none
*
*-------------------------------------------------------------------------
*/
void
cleanup_reference_deprec(void)
{
HDremove(FILE1);
HDremove(FILE2);
HDremove(FILE3);
}
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