mirror of
https://github.com/HDFGroup/hdf5.git
synced 2024-11-27 02:10:55 +08:00
427ff7da28
Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
780 lines
23 KiB
C
780 lines
23 KiB
C
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
|
|
* Copyright by the Board of Trustees of the University of Illinois. *
|
|
* All rights reserved. *
|
|
* *
|
|
* This file is part of HDF5. The full HDF5 copyright notice, including *
|
|
* terms governing use, modification, and redistribution, is contained in *
|
|
* the files COPYING and Copyright.html. COPYING can be found at the root *
|
|
* of the source code distribution tree; Copyright.html can be found at the *
|
|
* root level of an installed copy of the electronic HDF5 document set and *
|
|
* is linked from the top-level documents page. It can also be found at *
|
|
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
|
|
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
|
|
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
|
|
|
|
/*
|
|
* MPIO independent overlapping writes.
|
|
*
|
|
* First n-1 processes open 1 file.
|
|
* Each of the n-1 process writes chunks of data to the file in round-robin
|
|
* fashion, in a interleaved but not overlapped fashion. Using increasing
|
|
* chunk sizes for the benefits of testing different write sizes and also
|
|
* reducing the numbers of writes.
|
|
*
|
|
* Last process (n-1) just waits.
|
|
* First n-1 processes finish writing and cloose the file.
|
|
* Last process opens the same file and verifies the data.
|
|
*/
|
|
|
|
#include "testphdf5.h"
|
|
|
|
/* FILENAME and filenames must have the same number of names */
|
|
const char *FILENAME[2]={
|
|
"MPItest",
|
|
NULL};
|
|
char filenames[2][200];
|
|
int nerrors = 0;
|
|
hid_t fapl; /* file access property list */
|
|
|
|
/* protocols */
|
|
static int errors_sum(int nerrs);
|
|
|
|
#define MPIO_TEST_WRITE_SIZE 1024*1024 /* 1 MB */
|
|
|
|
static int
|
|
test_mpio_overlap_writes(char *filename)
|
|
{
|
|
int mpi_size, mpi_rank;
|
|
MPI_Comm comm;
|
|
MPI_Info info = MPI_INFO_NULL;
|
|
int color, mrc;
|
|
MPI_File fh;
|
|
int i;
|
|
int vrfyerrs, nerrs;
|
|
unsigned char buf[4093]; /* use some prime number for size */
|
|
int bufsize = sizeof(buf);
|
|
MPI_Offset stride;
|
|
MPI_Offset mpi_off;
|
|
MPI_Status mpi_stat;
|
|
|
|
|
|
if (VERBOSE_MED)
|
|
printf("MPIO independent overlapping writes test on file %s\n",
|
|
filename);
|
|
|
|
nerrs = 0;
|
|
/* set up MPI parameters */
|
|
MPI_Comm_size(MPI_COMM_WORLD,&mpi_size);
|
|
MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank);
|
|
|
|
/* Need at least 2 processes */
|
|
if (mpi_size < 2) {
|
|
if (MAINPROCESS)
|
|
printf("Need at least 2 processes to run MPIO test.\n");
|
|
printf(" -SKIP- \n");
|
|
return 0;
|
|
}
|
|
|
|
/* splits processes 0 to n-2 into one comm. and the last one into another */
|
|
color = ((mpi_rank < (mpi_size - 1)) ? 0 : 1);
|
|
mrc = MPI_Comm_split (MPI_COMM_WORLD, color, mpi_rank, &comm);
|
|
VRFY((mrc==MPI_SUCCESS), "Comm_split succeeded");
|
|
|
|
if (color==0){
|
|
/* First n-1 processes (color==0) open a file and write it */
|
|
mrc = MPI_File_open(comm, filename, MPI_MODE_CREATE|MPI_MODE_RDWR,
|
|
info, &fh);
|
|
VRFY((mrc==MPI_SUCCESS), "");
|
|
|
|
stride = 1;
|
|
mpi_off = mpi_rank*stride;
|
|
while (mpi_off < MPIO_TEST_WRITE_SIZE){
|
|
/* make sure the write does not exceed the TEST_WRITE_SIZE */
|
|
if (mpi_off+stride > MPIO_TEST_WRITE_SIZE)
|
|
stride = MPIO_TEST_WRITE_SIZE - mpi_off;
|
|
|
|
/* set data to some trivial pattern for easy verification */
|
|
for (i=0; i<stride; i++)
|
|
buf[i] = (unsigned char)(mpi_off+i);
|
|
mrc = MPI_File_write_at(fh, mpi_off, buf, (int)stride, MPI_BYTE,
|
|
&mpi_stat);
|
|
VRFY((mrc==MPI_SUCCESS), "");
|
|
|
|
/* move the offset pointer to last byte written by all processes */
|
|
mpi_off += (mpi_size - 1 - mpi_rank) * stride;
|
|
|
|
/* Increase chunk size without exceeding buffer size. */
|
|
/* Then move the starting offset for next write. */
|
|
stride *= 2;
|
|
if (stride > bufsize)
|
|
stride = bufsize;
|
|
mpi_off += mpi_rank*stride;
|
|
}
|
|
|
|
/* close file and free the communicator */
|
|
mrc = MPI_File_close(&fh);
|
|
VRFY((mrc==MPI_SUCCESS), "MPI_FILE_CLOSE");
|
|
mrc = MPI_Comm_free(&comm);
|
|
VRFY((mrc==MPI_SUCCESS), "MPI_Comm_free");
|
|
|
|
/* sync with the other waiting processes */
|
|
mrc = MPI_Barrier(MPI_COMM_WORLD);
|
|
VRFY((mrc==MPI_SUCCESS), "Sync after writes");
|
|
}else{
|
|
/* last process waits till writes are done,
|
|
* then opens file to verify data.
|
|
*/
|
|
mrc = MPI_Barrier(MPI_COMM_WORLD);
|
|
VRFY((mrc==MPI_SUCCESS), "Sync after writes");
|
|
|
|
mrc = MPI_File_open(comm, filename, MPI_MODE_RDONLY,
|
|
info, &fh);
|
|
VRFY((mrc==MPI_SUCCESS), "");
|
|
|
|
stride = bufsize;
|
|
for (mpi_off=0; mpi_off < MPIO_TEST_WRITE_SIZE; mpi_off += bufsize){
|
|
/* make sure it does not read beyond end of data */
|
|
if (mpi_off+stride > MPIO_TEST_WRITE_SIZE)
|
|
stride = MPIO_TEST_WRITE_SIZE - mpi_off;
|
|
mrc = MPI_File_read_at(fh, mpi_off, buf, (int)stride, MPI_BYTE,
|
|
&mpi_stat);
|
|
VRFY((mrc==MPI_SUCCESS), "");
|
|
vrfyerrs=0;
|
|
for (i=0; i<stride; i++){
|
|
unsigned char expected;
|
|
expected = (unsigned char)(mpi_off+i);
|
|
if ((expected != buf[i]) &&
|
|
(vrfyerrs++ < MAX_ERR_REPORT || VERBOSE_MED)) {
|
|
printf("proc %d: found data error at [%ld], expect %u, got %u\n",
|
|
mpi_rank, (long)(mpi_off+i), expected, buf[i]);
|
|
}
|
|
}
|
|
if (vrfyerrs > MAX_ERR_REPORT && !VERBOSE_MED)
|
|
printf("proc %d: [more errors ...]\n", mpi_rank);
|
|
|
|
nerrs += vrfyerrs;
|
|
}
|
|
|
|
/* close file and free the communicator */
|
|
mrc = MPI_File_close(&fh);
|
|
VRFY((mrc==MPI_SUCCESS), "MPI_FILE_CLOSE");
|
|
mrc = MPI_Comm_free(&comm);
|
|
VRFY((mrc==MPI_SUCCESS), "MPI_Comm_free");
|
|
}
|
|
|
|
/*
|
|
* one more sync to ensure all processes have done reading
|
|
* before ending this test.
|
|
*/
|
|
mrc = MPI_Barrier(MPI_COMM_WORLD);
|
|
VRFY((mrc==MPI_SUCCESS), "Sync before leaving test");
|
|
return (nerrs);
|
|
}
|
|
|
|
|
|
#define MB 1048576 /* 1024*1024 == 2**20 */
|
|
#define GB 1073741824 /* 1024**3 == 2**30 */
|
|
#define TWO_GB_LESS1 2147483647 /* 2**31 - 1 */
|
|
#define FOUR_GB_LESS1 4294967295L /* 2**32 - 1 */
|
|
/*
|
|
* Verify that MPI_Offset exceeding 2**31 can be computed correctly.
|
|
* Print any failure as information only, not as an error so that this
|
|
* won't abort the remaining test or other separated tests.
|
|
*
|
|
* Test if MPIO can write file from under 2GB to over 2GB and then
|
|
* from under 4GB to over 4GB.
|
|
* Each process writes 1MB in round robin fashion.
|
|
* Then reads the file back in by reverse order, that is process 0
|
|
* reads the data of process n-1 and vice versa.
|
|
*/
|
|
static int
|
|
test_mpio_gb_file(char *filename)
|
|
{
|
|
int mpi_size, mpi_rank;
|
|
MPI_Info info = MPI_INFO_NULL;
|
|
int mrc;
|
|
MPI_File fh;
|
|
int i, j, n;
|
|
int vrfyerrs;
|
|
int writerrs; /* write errors */
|
|
int nerrs;
|
|
int ntimes; /* how many times */
|
|
char *buf = NULL;
|
|
char expected;
|
|
MPI_Offset mpi_off;
|
|
MPI_Offset mpi_off_old;
|
|
MPI_Status mpi_stat;
|
|
int is_signed, sizeof_mpi_offset;
|
|
|
|
nerrs = 0;
|
|
/* set up MPI parameters */
|
|
MPI_Comm_size(MPI_COMM_WORLD,&mpi_size);
|
|
MPI_Comm_rank(MPI_COMM_WORLD,&mpi_rank);
|
|
|
|
if (VERBOSE_MED)
|
|
printf("MPI_Offset range test\n");
|
|
|
|
/* figure out the signness and sizeof MPI_Offset */
|
|
mpi_off = 0;
|
|
is_signed = ((MPI_Offset)(mpi_off - 1)) < 0;
|
|
sizeof_mpi_offset = (int)(sizeof(MPI_Offset));
|
|
|
|
/*
|
|
* Verify the sizeof MPI_Offset and correctness of handling multiple GB
|
|
* sizes.
|
|
*/
|
|
if (MAINPROCESS){ /* only process 0 needs to check it*/
|
|
printf("MPI_Offset is %s %d bytes integeral type\n",
|
|
is_signed ? "signed" : "unsigned", (int)sizeof(MPI_Offset));
|
|
if (sizeof_mpi_offset <= 4 && is_signed){
|
|
printf("Skipped 2GB range test "
|
|
"because MPI_Offset cannot support it\n");
|
|
}else {
|
|
/* verify correctness of assigning 2GB sizes */
|
|
mpi_off = 2 * 1024 * (MPI_Offset)MB;
|
|
INFO((mpi_off>0), "2GB OFFSET assignment no overflow");
|
|
INFO((mpi_off-1)==TWO_GB_LESS1, "2GB OFFSET assignment succeed");
|
|
|
|
/* verify correctness of increasing from below 2 GB to above 2GB */
|
|
mpi_off = TWO_GB_LESS1;
|
|
for (i=0; i < 3; i++){
|
|
mpi_off_old = mpi_off;
|
|
mpi_off = mpi_off + 1;
|
|
/* no overflow */
|
|
INFO((mpi_off>0), "2GB OFFSET increment no overflow");
|
|
/* correct inc. */
|
|
INFO((mpi_off-1)==mpi_off_old, "2GB OFFSET increment succeed");
|
|
}
|
|
}
|
|
|
|
if (sizeof_mpi_offset <= 4){
|
|
printf("Skipped 4GB range test "
|
|
"because MPI_Offset cannot support it\n");
|
|
}else {
|
|
/* verify correctness of assigning 4GB sizes */
|
|
mpi_off = 4 * 1024 * (MPI_Offset)MB;
|
|
INFO((mpi_off>0), "4GB OFFSET assignment no overflow");
|
|
INFO((mpi_off-1)==FOUR_GB_LESS1, "4GB OFFSET assignment succeed");
|
|
|
|
/* verify correctness of increasing from below 4 GB to above 4 GB */
|
|
mpi_off = FOUR_GB_LESS1;
|
|
for (i=0; i < 3; i++){
|
|
mpi_off_old = mpi_off;
|
|
mpi_off = mpi_off + 1;
|
|
/* no overflow */
|
|
INFO((mpi_off>0), "4GB OFFSET increment no overflow");
|
|
/* correct inc. */
|
|
INFO((mpi_off-1)==mpi_off_old, "4GB OFFSET increment succeed");
|
|
}
|
|
}
|
|
}
|
|
|
|
/*
|
|
* Verify if we can write to a file of multiple GB sizes.
|
|
*/
|
|
if (VERBOSE_MED)
|
|
printf("MPIO GB file test %s\n", filename);
|
|
|
|
if (sizeof_mpi_offset <= 4){
|
|
printf("Skipped GB file range test "
|
|
"because MPI_Offset cannot support it\n");
|
|
}else{
|
|
buf = malloc(MB);
|
|
VRFY((buf!=NULL), "malloc succeed");
|
|
|
|
/* open a new file. Remove it first in case it exists. */
|
|
if (MAINPROCESS)
|
|
remove(filename);
|
|
MPI_Barrier(MPI_COMM_WORLD); /* prevent racing condition */
|
|
|
|
mrc = MPI_File_open(MPI_COMM_WORLD, filename, MPI_MODE_CREATE|MPI_MODE_RDWR,
|
|
info, &fh);
|
|
VRFY((mrc==MPI_SUCCESS), "MPI_FILE_OPEN");
|
|
|
|
printf("MPIO GB file write test %s\n", filename);
|
|
|
|
/* instead of writing every bytes of the file, we will just write
|
|
* some data around the 2 and 4 GB boundaries. That should cover
|
|
* potential integer overflow and filesystem size limits.
|
|
*/
|
|
writerrs = 0;
|
|
for (n=2; n <= 4; n+=2){
|
|
ntimes = GB/MB*n/mpi_size + 1;
|
|
for (i=ntimes-2; i <= ntimes; i++){
|
|
mpi_off = (i*mpi_size + mpi_rank)*(MPI_Offset)MB;
|
|
if (VERBOSE_MED)
|
|
HDfprintf(stdout,"proc %d: write to mpi_off=%016llx, %lld\n",
|
|
mpi_rank, mpi_off, mpi_off);
|
|
/* set data to some trivial pattern for easy verification */
|
|
for (j=0; j<MB; j++)
|
|
*(buf+j) = i*mpi_size + mpi_rank;
|
|
if (VERBOSE_MED)
|
|
HDfprintf(stdout,"proc %d: writing %d bytes at offset %lld\n",
|
|
mpi_rank, MB, mpi_off);
|
|
mrc = MPI_File_write_at(fh, mpi_off, buf, MB, MPI_BYTE, &mpi_stat);
|
|
INFO((mrc==MPI_SUCCESS), "GB size file write");
|
|
if (mrc!=MPI_SUCCESS)
|
|
writerrs++;
|
|
}
|
|
}
|
|
|
|
/* close file and free the communicator */
|
|
mrc = MPI_File_close(&fh);
|
|
VRFY((mrc==MPI_SUCCESS), "MPI_FILE_CLOSE");
|
|
|
|
mrc = MPI_Barrier(MPI_COMM_WORLD);
|
|
VRFY((mrc==MPI_SUCCESS), "Sync after writes");
|
|
|
|
/*
|
|
* Verify if we can read the multiple GB file just created.
|
|
*/
|
|
/* open it again to verify the data written */
|
|
/* but only if there was no write errors */
|
|
printf("MPIO GB file read test %s\n", filename);
|
|
if (errors_sum(writerrs)>0){
|
|
printf("proc %d: Skip read test due to previous write errors\n",
|
|
mpi_rank);
|
|
goto finish;
|
|
}
|
|
mrc = MPI_File_open(MPI_COMM_WORLD, filename, MPI_MODE_RDONLY, info, &fh);
|
|
VRFY((mrc==MPI_SUCCESS), "");
|
|
|
|
/* Only read back parts of the file that have been written. */
|
|
for (n=2; n <= 4; n+=2){
|
|
ntimes = GB/MB*n/mpi_size + 1;
|
|
for (i=ntimes-2; i <= ntimes; i++){
|
|
mpi_off = (i*mpi_size + (mpi_size - mpi_rank - 1))*(MPI_Offset)MB;
|
|
if (VERBOSE_MED)
|
|
HDfprintf(stdout,"proc %d: read from mpi_off=%016llx, %lld\n",
|
|
mpi_rank, mpi_off, mpi_off);
|
|
mrc = MPI_File_read_at(fh, mpi_off, buf, MB, MPI_BYTE, &mpi_stat);
|
|
INFO((mrc==MPI_SUCCESS), "GB size file read");
|
|
expected = i*mpi_size + (mpi_size - mpi_rank - 1);
|
|
vrfyerrs=0;
|
|
for (j=0; j<MB; j++){
|
|
if ((*(buf+j) != expected) &&
|
|
(vrfyerrs++ < MAX_ERR_REPORT || VERBOSE_MED)){
|
|
printf("proc %d: found data error at [%ld+%d], expect %d, got %d\n",
|
|
mpi_rank, (long)mpi_off, j, expected, *(buf+j));
|
|
}
|
|
}
|
|
if (vrfyerrs > MAX_ERR_REPORT && !VERBOSE_MED)
|
|
printf("proc %d: [more errors ...]\n", mpi_rank);
|
|
|
|
nerrs += vrfyerrs;
|
|
}
|
|
}
|
|
|
|
/* close file and free the communicator */
|
|
mrc = MPI_File_close(&fh);
|
|
VRFY((mrc==MPI_SUCCESS), "MPI_FILE_CLOSE");
|
|
|
|
/*
|
|
* one more sync to ensure all processes have done reading
|
|
* before ending this test.
|
|
*/
|
|
mrc = MPI_Barrier(MPI_COMM_WORLD);
|
|
VRFY((mrc==MPI_SUCCESS), "Sync before leaving test");
|
|
}
|
|
|
|
finish:
|
|
if (buf)
|
|
HDfree(buf);
|
|
return (nerrs);
|
|
}
|
|
|
|
|
|
/*
|
|
* MPI-IO Test: One writes, Many reads.
|
|
* Verify if only one process writes some data and then all other
|
|
* processes can read them back correctly. This tests if the
|
|
* underlaying parallel I/O and file system supports parallel I/O
|
|
* correctly.
|
|
*
|
|
* Algorithm: Only one process (e.g., process 0) writes some data.
|
|
* Then all processes, including the writing process, read the data
|
|
* back and verify them against the original values.
|
|
*/
|
|
|
|
/*
|
|
* Default filename can be specified via first program argument.
|
|
* Each process writes something, then reads all data back.
|
|
*/
|
|
|
|
#define DIMSIZE 32 /* Dimension size. */
|
|
#define PRINTID printf("Proc %d: ", mpi_rank)
|
|
#define USENONE 0
|
|
#define USEATOM 1 /* request atomic I/O */
|
|
#define USEFSYNC 2 /* request file_sync */
|
|
|
|
|
|
static int
|
|
test_mpio_1wMr(char *filename, int special_request)
|
|
{
|
|
char hostname[128];
|
|
int mpi_size, mpi_rank;
|
|
MPI_File fh;
|
|
char mpi_err_str[MPI_MAX_ERROR_STRING];
|
|
int mpi_err_strlen;
|
|
int mpi_err;
|
|
unsigned char writedata[DIMSIZE], readdata[DIMSIZE];
|
|
unsigned char expect_val;
|
|
int i, irank;
|
|
int nerrs = 0; /* number of errors */
|
|
int atomicity;
|
|
MPI_Offset mpi_off;
|
|
MPI_Status mpi_stat;
|
|
|
|
MPI_Comm_size(MPI_COMM_WORLD, &mpi_size);
|
|
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
|
|
|
|
if (MAINPROCESS && VERBOSE_MED){
|
|
printf("Testing one process writes, all processes read.\n");
|
|
printf("Using %d processes accessing file %s\n", mpi_size, filename);
|
|
printf(" (Filename can be specified via program argument)\n");
|
|
}
|
|
|
|
/* show the hostname so that we can tell where the processes are running */
|
|
if (VERBOSE_DEF){
|
|
if (gethostname(hostname, 128) < 0){
|
|
PRINTID;
|
|
printf("gethostname failed\n");
|
|
return 1;
|
|
}
|
|
PRINTID;
|
|
printf("hostname=%s\n", hostname);
|
|
}
|
|
|
|
/* Delete any old file in order to start anew. */
|
|
/* Must delete because MPI_File_open does not have a Truncate mode. */
|
|
/* Don't care if it has error. */
|
|
MPI_File_delete(filename, MPI_INFO_NULL);
|
|
|
|
if ((mpi_err = MPI_File_open(MPI_COMM_WORLD, filename,
|
|
MPI_MODE_RDWR | MPI_MODE_CREATE ,
|
|
MPI_INFO_NULL, &fh))
|
|
!= MPI_SUCCESS){
|
|
MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
|
|
PRINTID;
|
|
printf("MPI_File_open failed (%s)\n", mpi_err_str);
|
|
return 1;
|
|
}
|
|
|
|
if (special_request & USEATOM){
|
|
/* ==================================================
|
|
* Set atomcity to true (1). A POSIX compliant filesystem
|
|
* should not need this.
|
|
* ==================================================*/
|
|
if ((mpi_err = MPI_File_get_atomicity(fh, &atomicity)) != MPI_SUCCESS){
|
|
MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
|
|
PRINTID;
|
|
printf("MPI_File_get_atomicity failed (%s)\n", mpi_err_str);
|
|
}
|
|
if (VERBOSE_HI)
|
|
printf("Initial atomicity = %d\n", atomicity);
|
|
if ((mpi_err = MPI_File_set_atomicity(fh, 1)) != MPI_SUCCESS){
|
|
MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
|
|
PRINTID;
|
|
printf("MPI_File_set_atomicity failed (%s)\n", mpi_err_str);
|
|
}
|
|
if ((mpi_err = MPI_File_get_atomicity(fh, &atomicity)) != MPI_SUCCESS){
|
|
MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
|
|
PRINTID;
|
|
printf("MPI_File_get_atomicity failed (%s)\n", mpi_err_str);
|
|
}
|
|
if (VERBOSE_HI)
|
|
printf("After set_atomicity atomicity = %d\n", atomicity);
|
|
}
|
|
|
|
/* This barrier is not necessary but do it anyway. */
|
|
MPI_Barrier(MPI_COMM_WORLD);
|
|
if (VERBOSE_HI){
|
|
PRINTID;
|
|
printf("between MPI_Barrier and MPI_File_write_at\n");
|
|
}
|
|
|
|
/* ==================================================
|
|
* Each process calculates what to write but
|
|
* only process irank(0) writes.
|
|
* ==================================================*/
|
|
irank=0;
|
|
for (i=0; i < DIMSIZE; i++)
|
|
writedata[i] = irank*DIMSIZE + i;
|
|
mpi_off = irank*DIMSIZE;
|
|
|
|
/* Only one process writes */
|
|
if (mpi_rank==irank){
|
|
if (VERBOSE_HI){
|
|
PRINTID; printf("wrote %d bytes at %ld\n", DIMSIZE, (long)mpi_off);
|
|
}
|
|
if ((mpi_err = MPI_File_write_at(fh, mpi_off, writedata, DIMSIZE,
|
|
MPI_BYTE, &mpi_stat))
|
|
!= MPI_SUCCESS){
|
|
MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
|
|
PRINTID;
|
|
printf("MPI_File_write_at offset(%ld), bytes (%d), failed (%s)\n",
|
|
(long) mpi_off, DIMSIZE, mpi_err_str);
|
|
return 1;
|
|
};
|
|
};
|
|
|
|
/* Bcast the return code and */
|
|
/* make sure all writing are done before reading. */
|
|
MPI_Bcast(&mpi_err, 1, MPI_INT, irank, MPI_COMM_WORLD);
|
|
if (VERBOSE_HI){
|
|
PRINTID;
|
|
printf("MPI_Bcast: mpi_err = %d\n", mpi_err);
|
|
}
|
|
|
|
if (special_request & USEFSYNC){
|
|
/* ==================================================
|
|
* Do a file sync. A POSIX compliant filesystem
|
|
* should not need this.
|
|
* ==================================================*/
|
|
if (VERBOSE_HI)
|
|
printf("Apply MPI_File_sync\n");
|
|
/* call file_sync to force the write out */
|
|
if ((mpi_err = MPI_File_sync(fh)) != MPI_SUCCESS){
|
|
MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
|
|
PRINTID;
|
|
printf("MPI_File_sync failed (%s)\n", mpi_err_str);
|
|
}
|
|
MPI_Barrier(MPI_COMM_WORLD);
|
|
/* call file_sync to force the write out */
|
|
if ((mpi_err = MPI_File_sync(fh)) != MPI_SUCCESS){
|
|
MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
|
|
PRINTID;
|
|
printf("MPI_File_sync failed (%s)\n", mpi_err_str);
|
|
}
|
|
}
|
|
|
|
/* This barrier is not necessary because the Bcase or File_sync above */
|
|
/* should take care of it. Do it anyway. */
|
|
MPI_Barrier(MPI_COMM_WORLD);
|
|
if (VERBOSE_HI){
|
|
PRINTID;
|
|
printf("after MPI_Barrier\n");
|
|
}
|
|
|
|
/* ==================================================
|
|
* Each process reads what process 0 wrote and verify.
|
|
* ==================================================*/
|
|
irank=0;
|
|
mpi_off = irank*DIMSIZE;
|
|
if ((mpi_err = MPI_File_read_at(fh, mpi_off, readdata, DIMSIZE, MPI_BYTE,
|
|
&mpi_stat))
|
|
!= MPI_SUCCESS){
|
|
MPI_Error_string(mpi_err, mpi_err_str, &mpi_err_strlen);
|
|
PRINTID;
|
|
printf("MPI_File_read_at offset(%ld), bytes (%d), failed (%s)\n",
|
|
(long) mpi_off, DIMSIZE, mpi_err_str);
|
|
return 1;
|
|
};
|
|
for (i=0; i < DIMSIZE; i++){
|
|
expect_val = irank*DIMSIZE + i;
|
|
if (readdata[i] != expect_val){
|
|
PRINTID;
|
|
printf("read data[%d:%d] got %02x, expect %02x\n", irank, i,
|
|
readdata[i], expect_val);
|
|
nerrs++;
|
|
}
|
|
}
|
|
|
|
MPI_File_close(&fh);
|
|
|
|
if (VERBOSE_HI){
|
|
PRINTID;
|
|
printf("%d data errors detected\n", nerrs);
|
|
}
|
|
|
|
mpi_err = MPI_Barrier(MPI_COMM_WORLD);
|
|
return nerrs;
|
|
}
|
|
|
|
|
|
/*
|
|
* parse the command line options
|
|
*/
|
|
static int
|
|
parse_options(int argc, char **argv)
|
|
{
|
|
while (--argc){
|
|
if (**(++argv) != '-'){
|
|
break;
|
|
}else{
|
|
switch(*(*argv+1)){
|
|
case 'v': if (*((*argv+1)+1))
|
|
ParseTestVerbosity((*argv+1)+1);
|
|
else
|
|
SetTestVerbosity(VERBO_MED);
|
|
break;
|
|
case 'f': if (--argc < 1) {
|
|
nerrors++;
|
|
return(1);
|
|
}
|
|
if (**(++argv) == '-') {
|
|
nerrors++;
|
|
return(1);
|
|
}
|
|
paraprefix = *argv;
|
|
break;
|
|
case 'h': /* print help message--return with nerrors set */
|
|
return(1);
|
|
default: nerrors++;
|
|
return(1);
|
|
}
|
|
}
|
|
} /*while*/
|
|
|
|
/* compose the test filenames */
|
|
{
|
|
int i, n;
|
|
hid_t plist;
|
|
|
|
plist = H5Pcreate (H5P_FILE_ACCESS);
|
|
H5Pset_fapl_mpio(plist, MPI_COMM_WORLD, MPI_INFO_NULL);
|
|
n = sizeof(FILENAME)/sizeof(FILENAME[0]) - 1; /* exclude the NULL */
|
|
|
|
for (i=0; i < n; i++)
|
|
if (h5_fixname(FILENAME[i],plist,filenames[i],sizeof(filenames[i]))
|
|
== NULL){
|
|
printf("h5_fixname failed\n");
|
|
nerrors++;
|
|
return(1);
|
|
}
|
|
H5Pclose(plist);
|
|
if (VERBOSE_MED){
|
|
printf("Test filenames are:\n");
|
|
for (i=0; i < n; i++)
|
|
printf(" %s\n", filenames[i]);
|
|
}
|
|
}
|
|
|
|
return(0);
|
|
}
|
|
|
|
|
|
/*
|
|
* Show command usage
|
|
*/
|
|
static void
|
|
usage(void)
|
|
{
|
|
printf("Usage: t_mpi [-v<verbosity>] [-f <prefix>]\n");
|
|
printf("\t-v<verbosity>\tset verbose level (0-9,l,m,h)\n");
|
|
printf("\t-f <prefix>\tfilename prefix\n");
|
|
printf("\n");
|
|
}
|
|
|
|
/*
|
|
* return the sum of all errors.
|
|
*/
|
|
static int
|
|
errors_sum(int nerrs)
|
|
{
|
|
int temp;
|
|
MPI_Allreduce(&nerrs, &temp, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
|
|
return(temp);
|
|
}
|
|
|
|
|
|
int
|
|
main(int argc, char **argv)
|
|
{
|
|
int mpi_size, mpi_rank; /* mpi variables */
|
|
int ret_code;
|
|
|
|
MPI_Init(&argc, &argv);
|
|
MPI_Comm_size(MPI_COMM_WORLD, &mpi_size);
|
|
MPI_Comm_rank(MPI_COMM_WORLD, &mpi_rank);
|
|
|
|
H5open();
|
|
if (parse_options(argc, argv) != 0){
|
|
if (MAINPROCESS)
|
|
usage();
|
|
goto finish;
|
|
}
|
|
|
|
if (MAINPROCESS){
|
|
printf("===================================\n");
|
|
printf("MPI functionality tests\n");
|
|
printf("===================================\n");
|
|
}
|
|
|
|
if (VERBOSE_MED)
|
|
h5_show_hostname();
|
|
|
|
fapl = H5Pcreate (H5P_FILE_ACCESS);
|
|
H5Pset_fapl_mpio(fapl, MPI_COMM_WORLD, MPI_INFO_NULL);
|
|
|
|
MPI_BANNER("MPIO 1 write Many read test...");
|
|
ret_code = test_mpio_1wMr(filenames[0], USENONE);
|
|
ret_code = errors_sum(ret_code);
|
|
if (mpi_rank==0 && ret_code > 0){
|
|
printf("***FAILED with %d total errors\n", ret_code);
|
|
nerrors += ret_code;
|
|
}
|
|
|
|
/* test atomicity and file sync in high verbose mode only */
|
|
/* since they often hang when broken and PHDF5 does not use them. */
|
|
if (VERBOSE_HI){
|
|
MPI_BANNER("MPIO 1 write Many read test with atomicity...");
|
|
ret_code = test_mpio_1wMr(filenames[0], USEATOM);
|
|
ret_code = errors_sum(ret_code);
|
|
if (mpi_rank==0 && ret_code > 0){
|
|
printf("***FAILED with %d total errors\n", ret_code);
|
|
nerrors += ret_code;
|
|
}
|
|
|
|
MPI_BANNER("MPIO 1 write Many read test with file sync...");
|
|
ret_code = test_mpio_1wMr(filenames[0], USEFSYNC);
|
|
ret_code = errors_sum(ret_code);
|
|
if (mpi_rank==0 && ret_code > 0){
|
|
printf("***FAILED with %d total errors\n", ret_code);
|
|
nerrors += ret_code;
|
|
}
|
|
}
|
|
|
|
MPI_BANNER("MPIO File size range test...");
|
|
ret_code = test_mpio_gb_file(filenames[0]);
|
|
ret_code = errors_sum(ret_code);
|
|
if (mpi_rank==0 && ret_code > 0){
|
|
printf("***FAILED with %d total errors\n", ret_code);
|
|
nerrors += ret_code;
|
|
}
|
|
|
|
MPI_BANNER("MPIO independent overlapping writes...");
|
|
ret_code = test_mpio_overlap_writes(filenames[0]);
|
|
ret_code = errors_sum(ret_code);
|
|
if (mpi_rank==0 && ret_code > 0){
|
|
printf("***FAILED with %d total errors\n", ret_code);
|
|
nerrors += ret_code;
|
|
}
|
|
|
|
finish:
|
|
/* make sure all processes are finished before final report, cleanup
|
|
* and exit.
|
|
*/
|
|
MPI_Barrier(MPI_COMM_WORLD);
|
|
if (MAINPROCESS){ /* only process 0 reports */
|
|
printf("===================================\n");
|
|
if (nerrors){
|
|
printf("***MPI tests detected %d errors***\n", nerrors);
|
|
}
|
|
else{
|
|
printf("MPI tests finished with no errors\n");
|
|
}
|
|
printf("===================================\n");
|
|
}
|
|
|
|
h5_cleanup(FILENAME, fapl);
|
|
H5close();
|
|
|
|
/* MPI_Finalize must be called AFTER H5close which may use MPI calls */
|
|
MPI_Finalize();
|
|
|
|
/* cannot just return (nerrors) because exit code is limited to 1byte */
|
|
return(nerrors!=0);
|
|
}
|
|
|