mirror of
https://github.com/HDFGroup/hdf5.git
synced 2024-11-21 01:04:10 +08:00
9f60f016ab
Bring file free space branch changes through r15795 into trunk, which
includes a fair bit of code cleanup & rearrangement along with a couple of
bug fixes also.
Tested on:
Mac OS X/32 10.5.5 (amazon) in debug mode
Mac OS X/32 10.5.5 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
in debug mode
Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
665 lines
18 KiB
C
665 lines
18 KiB
C
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the files COPYING and Copyright.html. COPYING can be found at the root *
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* of the source code distribution tree; Copyright.html can be found at the *
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* root level of an installed copy of the electronic HDF5 document set and *
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* is linked from the top-level documents page. It can also be found at *
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* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
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* access to either file, you may request a copy from help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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/*
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* Programmer: Robb Matzke <matzke@llnl.gov>
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* Wednesday, April 8, 1998
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*/
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#include "h5test.h"
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const char *FILENAME[] = {
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"big",
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"sec2",
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"stdio",
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NULL
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};
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#define DNAME "big.data"
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#define WRT_N 50
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#define WRT_SIZE 4*1024
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#define FAMILY_SIZE 1024*1024*1024
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/* Define big file as 2GB */
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#define BIG_FILE (off_t)0x80000000UL
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#define MAX_TRIES 100
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#if H5_SIZEOF_LONG_LONG >= 8
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# define GB8LL ((unsigned long_long)8*1024*1024*1024)
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#else
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# define GB8LL 0 /*cannot do the test*/
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#endif
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/* Protocols */
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static void usage(void);
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/* Array used to record all addresses at which data has been written */
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/* so far. Used to prevent overlapping writes. */
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static hsize_t values_used[WRT_N];
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/*-------------------------------------------------------------------------
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* Function: randll
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*
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* Purpose: Create a random long_long value.
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* Ensures that a write at this value doesn't overlap any
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* previous write.
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*
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* Return: Success: Random value
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*
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* Failure: Random value which overlaps another write
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*
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* Programmer: Robb Matzke
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* Tuesday, November 24, 1998
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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static hsize_t
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randll(hsize_t limit, int current_index)
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{
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hsize_t acc;
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int overlap = 1;
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int i;
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int tries = 0;
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/* Generate up to MAX_TRIES random numbers until one of them */
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/* does not overlap with any previous writes */
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while(overlap != 0 && tries < MAX_TRIES)
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{
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acc = HDrandom();
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acc *= HDrandom();
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acc = acc % limit;
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overlap = 0;
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for(i = 0; i < current_index; i++)
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{
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if((acc >= values_used[i]) && (acc < values_used[i]+WRT_SIZE))
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overlap = 1;
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if((acc+WRT_SIZE >= values_used[i]) && (acc+WRT_SIZE < values_used[i]+WRT_SIZE))
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overlap = 1;
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}
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tries++;
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}
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values_used[current_index]=acc;
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return acc;
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}
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/*-------------------------------------------------------------------------
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* Function: is_sparse
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*
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* Purpose: Determines if the file system of the current working
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* directory supports holes.
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*
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* Return: Success: Non-zero if holes are supported; zero
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* otherwise.
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*
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* Failure: zero
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*
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* Programmer: Robb Matzke
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* Wednesday, July 15, 1998
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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static int
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is_sparse(void)
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{
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int fd;
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h5_stat_t sb;
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if ((fd=HDopen("x.h5", O_RDWR|O_TRUNC|O_CREAT, 0666)) < 0) return 0;
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if (HDlseek(fd, (off_t)(1024*1024), SEEK_SET)!=1024*1024) return 0;
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if (5!=HDwrite(fd, "hello", (size_t)5)) return 0;
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if (HDclose(fd) < 0) return 0;
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if (HDstat("x.h5", &sb) < 0) return 0;
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if (HDunlink("x.h5") < 0) return 0;
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#ifdef H5_HAVE_STAT_ST_BLOCKS
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return ((unsigned long)sb.st_blocks*512 < (unsigned long)sb.st_size);
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#else
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return (0);
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#endif
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}
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/*-------------------------------------------------------------------------
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* Function: supports_big
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*
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* Purpose: Determines if the file system of the current working
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* directory supports big files.
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*
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* Return: Success: Non-zero if big files are supported; zero
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* otherwise.
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*
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* Failure: zero
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*
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* Programmer: Raymond Lu
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* Wednesday, April 18, 2007
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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static int
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supports_big(void)
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{
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int fd;
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if ((fd=HDopen("y.h5", O_RDWR|O_TRUNC|O_CREAT, 0666)) < 0) return 0;
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/* Write a few bytes at 2GB */
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if (HDlseek(fd, BIG_FILE, SEEK_SET)!=BIG_FILE) return 0;
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if (5!=HDwrite(fd, "hello", (size_t)5)) return 0;
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/* Write a few bytes at 4GB */
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if (HDlseek(fd, 2*BIG_FILE, SEEK_SET) != 2*BIG_FILE) return 0;
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if (5!=HDwrite(fd, "hello", (size_t)5)) return 0;
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if (HDclose(fd) < 0) return 0;
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if (HDunlink("y.h5") < 0) return 0;
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return (1);
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}
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/*-------------------------------------------------------------------------
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* Function: enough_room
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*
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* Purpose: Tries to create a bunch of sparse files to see if quotas will
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* get in the way. Some systems also have problems opening
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* enough files and we'll check that too.
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*
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* Return: Success: Non-zero
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*
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* Failure: zero
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*
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* Programmer: Robb Matzke
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* Thursday, August 6, 1998
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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static int
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enough_room(hid_t fapl)
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{
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int ret_value=0;
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int fd[68];
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size_t i, size = (size_t)1 << 30;
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char filename[1024], name[1024];
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/* Initialize file descriptors */
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for (i=0; i<NELMTS(fd); i++) fd[i] = -1;
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/* Get file name template */
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assert(H5FD_FAMILY==H5Pget_driver(fapl));
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h5_fixname(FILENAME[0], fapl, filename, sizeof filename);
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/* Create files */
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for (i=0; i<NELMTS(fd); i++) {
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HDsnprintf(name, sizeof name, filename, i);
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if ((fd[i]=HDopen(name, O_RDWR|O_CREAT|O_TRUNC, 0666)) < 0) {
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goto done;
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}
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if ((off_t)size != HDlseek(fd[i], (off_t)size, SEEK_SET)) {
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goto done;
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}
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if (1!=HDwrite(fd[i], "X", (size_t)1)) {
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goto done;
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}
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}
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ret_value = 1;
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done:
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for (i=0; i<NELMTS(fd) && fd[i]>=0; i++) {
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HDsnprintf(name, sizeof name, filename, i);
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if(HDclose(fd[i]) < 0)
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ret_value=0;
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HDunlink(name);
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}
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return ret_value;
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}
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/*-------------------------------------------------------------------------
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* Function: writer
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*
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* Purpose: Creates a *big* dataset.
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*
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* Return: Success: 0
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*
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* Failure: >0
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*
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* Programmer: Robb Matzke
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* Wednesday, April 8, 1998
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*
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* Modifications:
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* Robb Matzke, 15 Jul 1998
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* Addresses are written to the file DNAME instead of stdout.
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*
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*-------------------------------------------------------------------------
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*/
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static int
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writer (char* filename, hid_t fapl, int wrt_n)
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{
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hsize_t size1[4] = {8, 1024, 1024, 1024};
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hsize_t size2[1] = {GB8LL};
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hsize_t hs_start[1];
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hsize_t hs_size[1];
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hid_t file=-1, space1=-1, space2=-1, mem_space=-1, d1=-1, d2=-1;
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int *buf = (int*)malloc (sizeof(int) * WRT_SIZE);
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int i, j;
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FILE *out = fopen(DNAME, "w");
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hid_t dcpl;
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TESTING("large dataset write");
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/*
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* We might be on a machine that has 32-bit files, so create an HDF5 file
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* which is a family of files. Each member of the family will be 1GB
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*/
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if ((file=H5Fcreate(filename, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) {
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goto error;
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}
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/* Create simple data spaces according to the size specified above. */
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if ((space1 = H5Screate_simple (4, size1, size1)) < 0 ||
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(space2 = H5Screate_simple (1, size2, size2)) < 0) {
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goto error;
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}
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/* Create the datasets */
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/*
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* The fix below is provided for bug#921
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* H5Dcreate with H5P_DEFAULT creation properties
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* will create a set of solid 1GB files; test will crash if quotas are enforced
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* or it will take some time to write a file.
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* We should create a dataset allocating space late and never writing fill values.
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* EIP 4/8/03
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*/
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dcpl = H5Pcreate(H5P_DATASET_CREATE);
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H5Pset_alloc_time(dcpl, H5D_ALLOC_TIME_LATE);
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H5Pset_fill_time(dcpl, H5D_FILL_TIME_NEVER);
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if((d1 = H5Dcreate2(file, "d1", H5T_NATIVE_INT, space1, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0 ||
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(d2 = H5Dcreate2(file, "d2", H5T_NATIVE_INT, space2, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) {
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goto error;
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}
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/* Write some things to them randomly */
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hs_size[0] = WRT_SIZE;
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if ((mem_space = H5Screate_simple (1, hs_size, hs_size)) < 0) goto error;
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for (i=0; i<wrt_n; i++) {
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hs_start[0] = randll (size2[0], i);
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HDfprintf (out, "#%03d 0x%016Hx\n", i, hs_start[0]);
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if (H5Sselect_hyperslab (space2, H5S_SELECT_SET, hs_start, NULL,
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hs_size, NULL) < 0) goto error;
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for (j=0; j<WRT_SIZE; j++) {
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buf[j] = i+1;
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}
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if (H5Dwrite (d2, H5T_NATIVE_INT, mem_space, space2,
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H5P_DEFAULT, buf) < 0) goto error;
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}
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if (H5Dclose (d1) < 0) goto error;
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if (H5Dclose (d2) < 0) goto error;
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if (H5Sclose (mem_space) < 0) goto error;
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if (H5Sclose (space1) < 0) goto error;
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if (H5Sclose (space2) < 0) goto error;
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if (H5Fclose (file) < 0) goto error;
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free (buf);
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fclose(out);
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PASSED();
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return 0;
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error:
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H5E_BEGIN_TRY {
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H5Dclose(d1);
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H5Dclose(d2);
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H5Sclose(space1);
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H5Sclose(space2);
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H5Sclose(mem_space);
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H5Fclose(file);
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} H5E_END_TRY;
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if (buf) free(buf);
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if (out) fclose(out);
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return 1;
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}
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/*-------------------------------------------------------------------------
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* Function: reader
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*
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* Purpose: Reads some data from random locations in the dataset.
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*
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* Return: Success: 0
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*
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* Failure: >0
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*
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* Programmer: Robb Matzke
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* Friday, April 10, 1998
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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static int
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reader(char *filename, hid_t fapl)
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{
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FILE *script = NULL;
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hid_t file = -1, mspace = -1, fspace = -1, d2 = -1;
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char ln[128], *s;
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hsize_t hs_offset[1];
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hsize_t hs_size[1] = {WRT_SIZE};
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int *buf = (int *)malloc(sizeof(int) * WRT_SIZE);
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int i, j, zero, wrong, nerrors = 0;
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/* Open script file */
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script = fopen(DNAME, "r");
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/* Open HDF5 file */
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if((file = H5Fopen(filename, H5F_ACC_RDONLY, fapl)) < 0) FAIL_STACK_ERROR
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/* Open the dataset */
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if((d2 = H5Dopen2(file, "d2", H5P_DEFAULT)) < 0) FAIL_STACK_ERROR
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if((fspace = H5Dget_space(d2)) < 0) FAIL_STACK_ERROR
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/* Describe `buf' */
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if((mspace = H5Screate_simple(1, hs_size, hs_size)) < 0) FAIL_STACK_ERROR
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/* Read each region */
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while(fgets(ln, (int)sizeof(ln), script)) {
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if('#' != ln[0])
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break;
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i = (int)strtol(ln + 1, &s, 10);
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hs_offset[0] = HDstrtoll(s, NULL, 0);
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HDfprintf(stdout, "#%03d 0x%016Hx%47s", i, hs_offset[0], "");
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fflush(stdout);
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if(H5Sselect_hyperslab(fspace, H5S_SELECT_SET, hs_offset, NULL,
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hs_size, NULL) < 0) FAIL_STACK_ERROR
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if(H5Dread(d2, H5T_NATIVE_INT, mspace, fspace, H5P_DEFAULT, buf) < 0)
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FAIL_STACK_ERROR
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/* Check */
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for(j = zero = wrong = 0; j < WRT_SIZE; j++) {
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if(0 == buf[j])
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zero++;
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else if(buf[j] != i + 1)
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wrong++;
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}
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if(zero) {
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H5_FAILED();
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printf(" %d zero%s\n", zero, 1 == zero ? "" : "s");
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} else if(wrong) {
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SKIPPED();
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puts(" Possible overlap with another region.");
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nerrors++;
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} else {
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PASSED();
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}
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}
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if(H5Dclose(d2) < 0) FAIL_STACK_ERROR
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if(H5Sclose(mspace) < 0) FAIL_STACK_ERROR
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if(H5Sclose(fspace) < 0) FAIL_STACK_ERROR
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if(H5Fclose(file) < 0) FAIL_STACK_ERROR
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free(buf);
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fclose(script);
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return nerrors;
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error:
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H5E_BEGIN_TRY {
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H5Dclose(d2);
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H5Sclose(mspace);
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H5Sclose(fspace);
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H5Fclose(file);
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} H5E_END_TRY;
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if(buf)
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free(buf);
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if(script)
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fclose(script);
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return 1;
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}
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/*-------------------------------------------------------------------------
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* Function: usage
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*
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* Purpose: Print command usage
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*
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* Return: void
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*
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* Programmer: Albert Chent
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* Mar 28, 2002
|
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*
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* Modifications:
|
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*
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*-------------------------------------------------------------------------
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*/
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static void
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usage(void)
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{
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HDfprintf(stdout,
|
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"Usage: big [-h] [-c] [-fsize <fsize>}\n"
|
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"\t-h\tPrint the help page\n"
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"\t-c\tFile system Checking skipped. Caution: this test generates\n"
|
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"\t\tmany big files and may fill up the file system.\n"
|
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"\t-fsize\tChange family size default to <fsize> where <fsize> is\n"
|
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"\t\ta positive float point number. Default value is %Hu.\n"
|
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"Examples:\n"
|
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"\tbig -fsize 2.1e9 \t# test with file size just under 2GB\n"
|
||
"\tbig -fsize 2.2e9 \t# test with file size just above 2GB\n"
|
||
"\tBe sure the file system can support the file size requested\n"
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, (hsize_t)FAMILY_SIZE);
|
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}
|
||
|
||
|
||
|
||
/*-------------------------------------------------------------------------
|
||
* Function: main
|
||
*
|
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* Purpose:
|
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*
|
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* Return: Success:
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*
|
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* Failure:
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*
|
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* Programmer: Robb Matzke
|
||
* Friday, April 10, 1998
|
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*
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* Modifications:
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* Albert Cheng, 2002/03/28
|
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* Added command option -fsize.
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* Albert Cheng, 2002/04/19
|
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* Added command option -c.
|
||
*
|
||
* Raymond Lu, 2007/05/25
|
||
* Added similar tests for SEC2 and STDIO drivers.
|
||
*
|
||
*-------------------------------------------------------------------------
|
||
*/
|
||
int
|
||
main (int ac, char **av)
|
||
{
|
||
hid_t fapl=-1;
|
||
hsize_t family_size;
|
||
hsize_t family_size_def; /* default family file size */
|
||
double family_size_def_dbl; /* default family file size */
|
||
unsigned long seed = 0; /* Random # seed */
|
||
int cflag=1; /* check file system before test */
|
||
char filename[1024];
|
||
|
||
/* parameters setup */
|
||
family_size_def = FAMILY_SIZE;
|
||
|
||
while (--ac > 0){
|
||
av++;
|
||
if (strcmp("-fsize", *av)==0){
|
||
/* specify a different family file size */
|
||
ac--; av++;
|
||
if (ac > 0){
|
||
family_size_def_dbl = atof(*av);
|
||
H5_ASSIGN_OVERFLOW(family_size_def,family_size_def_dbl,double,hsize_t);
|
||
if (family_size_def <= 0)
|
||
family_size_def = (hsize_t)FAMILY_SIZE;
|
||
}
|
||
else{
|
||
printf("***Missing fsize value***\n");
|
||
usage();
|
||
return 1;
|
||
}
|
||
}
|
||
else if (strcmp("-c", *av)==0){
|
||
/* turn off file system check before test */
|
||
cflag=0;
|
||
}
|
||
else if (strcmp("-h", *av)==0){
|
||
usage();
|
||
return 0;
|
||
}else{
|
||
usage();
|
||
return 1;
|
||
}
|
||
}
|
||
|
||
/* Choose random # seed */
|
||
seed = (unsigned long)HDtime(NULL);
|
||
#ifdef QAK
|
||
/* seed = (unsigned long)1155438845; */
|
||
HDfprintf(stderr, "Random # seed was: %lu\n", seed);
|
||
#endif /* QAK */
|
||
HDsrandom(seed);
|
||
|
||
/* Reset library */
|
||
h5_reset();
|
||
fapl = h5_fileaccess();
|
||
|
||
/* Test big file with the family driver */
|
||
puts("Testing big file with the Family Driver ");
|
||
if (H5FD_FAMILY!=H5Pget_driver(fapl)) {
|
||
HDfprintf(stdout,
|
||
"Changing file drivers to the family driver, %Hu bytes each\n",
|
||
family_size_def);
|
||
if (H5Pset_fapl_family(fapl, family_size_def, H5P_DEFAULT) < 0) goto error;
|
||
} else if (H5Pget_fapl_family(fapl, &family_size, NULL) < 0) {
|
||
goto error;
|
||
} else if (family_size!=family_size_def) {
|
||
HDfprintf(stdout, "Changing family member size from %Hu to %Hu\n",
|
||
family_size, family_size_def);
|
||
if (H5Pset_fapl_family(fapl, family_size_def, H5P_DEFAULT) < 0)
|
||
goto error;
|
||
}
|
||
|
||
if (cflag){
|
||
/*
|
||
* We shouldn't run this test if the file system doesn't support holes
|
||
* because we would generate multi-gigabyte files.
|
||
*/
|
||
puts("Checking if file system is adequate for this test...");
|
||
if (sizeof(long_long)<8 || 0==GB8LL) {
|
||
puts("Test skipped because sizeof(long_long) is too small. This");
|
||
puts("hardware apparently doesn't support 64-bit integer types.");
|
||
usage();
|
||
goto quit;
|
||
}
|
||
if (!is_sparse()) {
|
||
puts("Test skipped because file system does not support holes.");
|
||
usage();
|
||
goto quit;
|
||
}
|
||
if (!enough_room(fapl)) {
|
||
puts("Test skipped because of quota (file size or num open files).");
|
||
usage();
|
||
goto quit;
|
||
}
|
||
}
|
||
|
||
/* Do the test with the Family Driver */
|
||
h5_fixname(FILENAME[0], fapl, filename, sizeof filename);
|
||
|
||
if (writer(filename, fapl, WRT_N)) goto error;
|
||
if (reader(filename, fapl)) goto error;
|
||
|
||
puts("Test passed with the Family Driver.");
|
||
|
||
/*
|
||
* We shouldn't run this test if the file system doesn't support big files
|
||
* because we would generate multi-gigabyte files.
|
||
*/
|
||
puts("\nChecking if file system supports big files...");
|
||
if (!supports_big()) {
|
||
puts("Tests for sec2 and stdio are skipped because file system does not support big files.");
|
||
usage();
|
||
goto quit;
|
||
}
|
||
|
||
/* Clean up the test file */
|
||
if (h5_cleanup(FILENAME, fapl)) remove(DNAME);
|
||
|
||
/* Test big file with the SEC2 driver */
|
||
puts("Testing big file with the SEC2 Driver ");
|
||
|
||
fapl = h5_fileaccess();
|
||
if(H5Pset_fapl_sec2(fapl) < 0)
|
||
|
||
HDmemset(filename, 0, sizeof(filename));
|
||
h5_fixname(FILENAME[1], fapl, filename, sizeof filename);
|
||
|
||
if (writer(filename, fapl, WRT_N)) goto error;
|
||
if (reader(filename, fapl)) goto error;
|
||
|
||
puts("Test passed with the SEC2 Driver.");
|
||
|
||
#ifdef H5_HAVE_FSEEKO
|
||
/* Clean up the test file */
|
||
if (h5_cleanup(FILENAME, fapl)) remove(DNAME);
|
||
|
||
/* Test big file with the STDIO driver only if fseeko is supported,
|
||
* because the OFFSET parameter of fseek has the type LONG, not big
|
||
* enough to support big files. */
|
||
puts("\nTesting big file with the STDIO Driver ");
|
||
|
||
fapl = h5_fileaccess();
|
||
if(H5Pset_fapl_stdio(fapl) < 0)
|
||
|
||
HDmemset(filename, 0, sizeof(filename));
|
||
h5_fixname(FILENAME[2], fapl, filename, sizeof filename);
|
||
|
||
if (writer(filename, fapl, WRT_N)) goto error;
|
||
if (reader(filename, fapl)) goto error;
|
||
puts("Test passed with the STDIO Driver.");
|
||
#endif
|
||
|
||
quit:
|
||
/* End with normal exit code */
|
||
if (h5_cleanup(FILENAME, fapl)) remove(DNAME);
|
||
return 0;
|
||
|
||
error:
|
||
if (fapl>=0) H5Pclose(fapl);
|
||
puts("*** TEST FAILED ***");
|
||
return 1;
|
||
}
|
||
|