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hdf5/tools/test/h5copy/testh5copy.sh.in
Allen Byrne 3790ba38a1 HDFFV-10905 fix test scripts for no zlib
2019-09-17 14:38:26 -05:00

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#! /bin/sh
#
# Copyright by The HDF Group.
# Copyright by the Board of Trustees of the University of Illinois.
# All rights reserved.
#
# This file is part of HDF5. The full HDF5 copyright notice, including
# terms governing use, modification, and redistribution, is contained in
# the COPYING file, which can be found at the root of the source code
# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
# If you do not have access to either file, you may request a copy from
# help@hdfgroup.org.
#
# Tests for the h5copy tool
#
# Pedro Vicente Nunes (pvn@hdfgroup.org), Albert Cheng (acheng@hdfgroup.org)
# Thursday, July 20, 2006
#
srcdir=@srcdir@
# Determine which filters are available
USE_FILTER_SZIP="@USE_FILTER_SZIP@"
USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@"
# source dirs
SRC_TOOLS="$srcdir/../.."
SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles"
# testfiles source dirs for tools
SRC_H5LS_TESTFILES="$SRC_TOOLS_TESTFILES"
SRC_H5DUMP_TESTFILES="$SRC_TOOLS_TESTFILES"
SRC_H5DIFF_TESTFILES="$SRC_TOOLS/test/h5diff/testfiles"
SRC_H5COPY_TESTFILES="$SRC_TOOLS/test/h5copy/testfiles"
SRC_H5REPACK_TESTFILES="$SRC_TOOLS/test/h5repack/testfiles"
SRC_H5JAM_TESTFILES="$SRC_TOOLS/test/h5jam/testfiles"
SRC_H5STAT_TESTFILES="$SRC_TOOLS/test/h5stat/testfiles"
SRC_H5IMPORT_TESTFILES="$SRC_TOOLS/test/h5import/testfiles"
TESTNAME=h5copy
EXIT_SUCCESS=0
EXIT_FAILURE=1
######################################################################
# test files
# --------------------------------------------------------------------
# All the test files copy from source directory to test directory
# NOTE: Keep this framework to add/remove test files.
# Any test files from other tools can be used in this framework.
# This list are also used for checking exist.
# Comment '#' without space can be used.
# --------------------------------------------------------------------
# List of files that will be copied over to local test dir
LIST_HDF5_TEST_FILES="
$SRC_H5COPY_TESTFILES/h5copytst.h5
$SRC_H5COPY_TESTFILES/h5copy_ref.h5
$SRC_H5COPY_TESTFILES/h5copy_extlinks_src.h5
$SRC_H5COPY_TESTFILES/h5copy_extlinks_trg.h5
"
# List of expect files that will be copied over to local test dir
LIST_OTHER_TEST_FILES="
$SRC_H5COPY_TESTFILES/h5copy_misc1.out
$SRC_H5COPY_TESTFILES/h5copy_misc1.err
"
H5COPY=../../src/h5copy/h5copy # The tool name
H5COPY_BIN=`pwd`/$H5COPY # The path of the tool binary
H5DIFF=../../src/h5diff/h5diff # The h5diff tool name
H5DIFF_BIN=`pwd`/$H5DIFF # The path of the h5diff tool binary
H5LS=../../src/h5ls/h5ls # The h5ls tool name
H5LS_ARGS=-Svr # Arguments to the h5ls tool
H5LS_BIN=`pwd`/$H5LS # The path of the h5ls tool binary
RM='rm -rf'
CMP='cmp -s'
DIFF='diff -c'
CP='cp'
DIRNAME='dirname'
LS='ls'
AWK='awk'
nerrors=0
verbose=yes
h5haveexitcode=yes # default is yes
TESTDIR=./testfiles
test -d $TESTDIR || mkdir $TESTDIR
# RUNSERIAL is used. Check if it can return exit code from executalbe correctly.
if [ -n "$RUNSERIAL_NOEXITCODE" ]; then
echo "***Warning*** Serial Exit Code is not passed back to shell corretly."
echo "***Warning*** Exit code checking is skipped."
h5haveexitcode=no
fi
#
# copy test files and expected output files from source dirs to test dir
#
COPY_TESTFILES="$LIST_HDF5_TEST_FILES $LIST_OTHER_TEST_FILES"
COPY_TESTFILES_TO_TESTDIR()
{
# copy test files. Used -f to make sure get a new copy
for tstfile in $COPY_TESTFILES
do
# ignore '#' comment
echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
RET=$?
if [ $RET -eq 1 ]; then
# skip cp if srcdir is same as destdir
# this occurs when build/test performed in source dir and
# make cp fail
SDIR=`$DIRNAME $tstfile`
INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'`
if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
$CP -f $tstfile $TESTDIR
if [ $? -ne 0 ]; then
echo "Error: FAILED to copy $tstfile ."
# Comment out this to CREATE expected file
exit $EXIT_FAILURE
fi
fi
fi
done
}
CLEAN_TESTFILES_AND_TESTDIR()
{
# skip rm if srcdir is same as destdir
# this occurs when build/test performed in source dir and
# make cp fail
SDIR=$SRC_H5COPY_TESTFILES
INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'`
if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
$RM $TESTDIR
fi
}
# Print a "SKIP" message
SKIP() {
TESTING $H5COPY $@
echo " -SKIP-"
}
# Print a line-line message left justified in a field of 70 characters
# beginning with the word "Testing".
TESTING()
{
SPACES=" "
echo "Testing $* $SPACES" |cut -c1-70 |tr -d '\012'
}
# Print a line-line message left justified in a field of 70 characters
# beginning with the word "Verifying".
#
VERIFY()
{
SPACES=" "
echo "Verifying h5diff output $* $SPACES" | cut -c1-70 | tr -d '\012'
}
# Print a line-line message left justified in a field of 70 characters
# beginning with the word "Verifying".
#
VERIFY_OUTPUT()
{
SPACES=" "
echo "Verifying output files $* $SPACES" | cut -c1-70 | tr -d '\012'
}
# Source in the output filter function definitions.
. $srcdir/../../../bin/output_filter.sh
# Run a test and print PASS or *FAIL*. If h5copy can complete
# with exit status 0, consider it pass. If a test fails then increment
# the `nerrors' global variable.
# Assumed arguments:
# $1 is -i
# $2 is input file
# $3 is -o
# $4 is output file
# $* everything else arguments for h5copy.
TOOLTEST()
{
actualout="$TESTDIR/tooltest.actualout"
actualerr="$TESTDIR/tooltest.actualerr"
runh5diff=yes
if [ "$1" = -i ]; then
inputfile=$2
else
if [ "$1" = -f ]; then
inputfile=$4
else
inputfile=$3
fi
runh5diff=no
fi
if [ "$3" = -o ]; then
outputfile=$4
else
if [ "$1" = -f ]; then
outputfile=$6
else
outputfile=$5
fi
runh5diff=no
fi
TESTING $H5COPY $@
(
echo "#############################"
echo " output for '$H5COPY $@'"
echo "#############################"
$RUNSERIAL $H5COPY_BIN $@
) > $actualout 2> $actualerr
RET=$?
if [ $RET != 0 ]; then
echo "*FAILED*"
echo "failed result is:"
cat $actualout
nerrors="`expr $nerrors + 1`"
else
echo " PASSED"
if [ $runh5diff != no ]; then
H5DIFFTEST $inputfile $outputfile $7 $9
fi
# Clean up output file
if test -z "$HDF5_NOCLEANUP"; then
rm -f $actualout $actualerr $outputfile
fi
fi
}
# TOOLTEST back-to-back
TOOLTEST_PREFILL()
{
actualout="$TESTDIR/tooltest.actualout"
actualerr="$TESTDIR/tooltest.actualerr"
runh5diff=yes
if [ "$1" = -i ]; then
inputfile=$2
else
runh5diff=no
fi
if [ "$3" = -o ]; then
outputfile=$4
else
runh5diff=no
fi
grp_name=$5
grp_name2=$6
obj_name=$7
obj_name2=$8
TESTING $H5COPY $@
(
echo "#############################"
echo " output for '$H5COPY $@'"
echo "#############################"
$RUNSERIAL $H5COPY_BIN -i $inputfile -o $outputfile -v -s $grp_name -d $grp_name2
) > $actualout 2> $actualerr
RET=$?
if [ $RET != 0 ]; then
echo "*FAILED*"
echo "failed result is:"
cat $actualout
nerrors="`expr $nerrors + 1`"
else
TESTING $H5COPY $@
(
echo "#############################"
echo " output for '$H5COPY $@'"
echo "#############################"
$RUNSERIAL $H5COPY_BIN -i $inputfile -o $outputfile -v -s $obj_name -d $obj_name2
) > $actualout 2> $actualerr
RET=$?
if [ $RET != 0 ]; then
echo "*FAILED*"
echo "failed result is:"
cat $actualout
nerrors="`expr $nerrors + 1`"
else
echo " PASSED"
if [ $runh5diff != no ]; then
H5DIFFTEST $inputfile $outputfile $obj_name $obj_name2
fi
# Clean up output file
if test -z "$HDF5_NOCLEANUP"; then
rm -f $actualout $actualerr $outputfile
fi
fi
fi
}
# TOOLTEST back-to-back
TOOLTEST_SAME()
{
actualout="$TESTDIR/tooltest.actualout"
actualerr="$TESTDIR/tooltest.actualerr"
runh5diff=yes
if [ "$1" = -i ]; then
inputfile=$2
else
runh5diff=no
fi
if [ "$3" = -o ]; then
outputfile=$4
else
runh5diff=no
fi
grp_name=$5
grp_name2=$6
TESTING $H5COPY $@
(
echo "#############################"
echo " output for '$H5COPY $@'"
echo "#############################"
$RUNSERIAL $H5COPY_BIN -i $inputfile -o $outputfile -v -s $grp_name -d $grp_name
) > $actualout 2> $actualerr
RET=$?
if [ $RET != 0 ]; then
echo "*FAILED*"
echo "failed result is:"
cat $actualout
nerrors="`expr $nerrors + 1`"
else
TESTING $H5COPY $@
(
echo "#############################"
echo " output for '$H5COPY $@'"
echo "#############################"
$RUNSERIAL $H5COPY_BIN -i $outputfile -o $outputfile -v -s $grp_name -d $grp_name2
) > $actualout 2> $actualerr
RET=$?
if [ $RET != 0 ]; then
echo "*FAILED*"
echo "failed result is:"
cat $actualout
nerrors="`expr $nerrors + 1`"
else
echo " PASSED"
if [ $runh5diff != no ]; then
H5DIFFTEST $outputfile $outputfile $grp_name $grp_name2
fi
# Clean up output file
if test -z "$HDF5_NOCLEANUP"; then
rm -f $actualout $actualerr $outputfile
fi
fi
fi
}
# Compare the two text files
# PASS if same
# FAIL if different, and show the diff
#
# Assumed arguments:
# $1 is text file1 (expected output)
# $2 is text file2 (actual output)
CMP_OUTPUT()
{
expect=$1
actual=$2
VERIFY_OUTPUT $@
if [ ! -f $expect ]; then
# Create the expect file if it doesn't yet exist.
echo " CREATED"
cp $actual $expect
echo " Expected result (*.ddl) missing"
nerrors="`expr $nerrors + 1`"
elif $CMP $expect $actual; then
echo " PASSED"
else
echo "*FAILED*"
echo " Expected output differs from actual output"
nerrors="`expr $nerrors + 1`"
test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
fi
}
TOOLTEST_FAIL()
{
expectout="$TESTDIR/$1"
expecterr="$TESTDIR/`basename $1 .out`.err"
actualout="$TESTDIR/$1.actualout"
actualerr="$TESTDIR/$1.actualerr"
actualout_sav=${actualout}-sav
actualerr_sav=${actualerr}-sav
shift
if [ "$1" = -i ]; then
inputfile=$2
fi
if [ "$3" = -o ]; then
outputfile=$4
fi
TESTING $H5COPY $@
(
#echo "#############################"
#echo " output for '$H5COPY $@'"
#echo "#############################"
$RUNSERIAL $H5COPY_BIN $@
) > $actualout 2> $actualerr
RET=$?
# save actualout and actualerr in case they are needed later.
cp $actualout $actualout_sav
STDOUT_FILTER $actualout
cp $actualerr $actualerr_sav
STDERR_FILTER $actualerr
if [ $RET != 0 ]; then
echo " PASSED"
# Verifying output text from h5copy
if [ "$expectout" != "SKIP" ]; then
CMP_OUTPUT $expecterr $actualerr
fi
else
echo "*FAILED*"
echo "failed result is:"
cat $actualout
nerrors="`expr $nerrors + 1`"
fi
# Clean up output file
if test -z "$HDF5_NOCLEANUP"; then
rm -f $actualout $actualerr $actualout_sav $actualerr_sav $outputfile
fi
}
# Call the h5diff tool
#
H5DIFFTEST()
{
VERIFY $@
$RUNSERIAL $H5DIFF_BIN -q "$@"
RET=$?
if [ $RET != 0 ] ; then
echo "*FAILED*"
nerrors="`expr $nerrors + 1`"
else
echo " PASSED"
fi
}
# Call the h5diff tool with a call that is expected to fail
#
H5DIFFTEST_FAIL()
{
VERIFY $@
$RUNSERIAL $H5DIFF_BIN -q "$@"
RET=$?
if [ $h5haveexitcode = 'yes' -a $RET != 1 ] ; then
echo "*FAILED*"
nerrors="`expr $nerrors + 1`"
else
echo " PASSED"
fi
}
# Copy single datasets of various forms from one group to another,
# adding object copied to the destination file each time
#
# Assumed arguments:
# <none>
COPY_OBJECTS()
{
TESTFILE="$TESTDIR/h5copytst.h5"
echo "Test copying various forms of datasets"
TOOLTEST -i $TESTFILE -o $TESTDIR/simple.out.h5 -v -s simple -d simple
TOOLTEST -i $TESTFILE -o $TESTDIR/chunk.out.h5 -v -s chunk -d chunk
TOOLTEST -i $TESTFILE -o $TESTDIR/compact.out.h5 -v -s compact -d compact
TOOLTEST -i $TESTFILE -o $TESTDIR/compound.out.h5 -v -s compound -d compound
if test $USE_FILTER_DEFLATE = "yes" ; then
TOOLTEST -i $TESTFILE -o $TESTDIR/compressed.out.h5 -v -s compressed -d compressed
fi
TOOLTEST -i $TESTFILE -o $TESTDIR/named_vl.out.h5 -v -s named_vl -d named_vl
TOOLTEST -i $TESTFILE -o $TESTDIR/nested_vl.out.h5 -v -s nested_vl -d nested_vl
TOOLTEST -i $TESTFILE -o $TESTDIR/dset_attr.out.h5 -v -s /dset_attr -d /dset_attr
echo "Test copying dataset within group in source file to root of destination"
TOOLTEST -i $TESTFILE -o $TESTDIR/simple_top.out.h5 -v -s grp_dsets/simple -d simple_top
echo "Test copying & renaming dataset"
TOOLTEST -i $TESTFILE -o $TESTDIR/dsrename.out.h5 -v -s compound -d rename
echo "Test copying empty, 'full' & 'nested' groups"
TOOLTEST -i $TESTFILE -o $TESTDIR/grp_empty.out.h5 -v -s grp_empty -d grp_empty
if test $USE_FILTER_DEFLATE = "yes" ; then
TOOLTEST -i $TESTFILE -o $TESTDIR/grp_dsets.out.h5 -v -s grp_dsets -d grp_dsets
TOOLTEST -i $TESTFILE -o $TESTDIR/grp_nested.out.h5 -v -s grp_nested -d grp_nested
fi
TOOLTEST -i $TESTFILE -o $TESTDIR/grp_attr.out.h5 -v -s grp_attr -d grp_attr
echo "Test copying dataset within group in source file to group in destination"
TOOLTEST_PREFILL -i $TESTFILE -o $TESTDIR/simple_group.out.h5 grp_dsets grp_dsets /grp_dsets/simple /grp_dsets/simple_group
if test $USE_FILTER_DEFLATE = "yes" ; then
echo "Test copying & renaming group"
TOOLTEST -i $TESTFILE -o $TESTDIR/grp_rename.out.h5 -v -s grp_dsets -d grp_rename
echo "Test copying 'full' group hierarchy into group in destination file"
TOOLTEST_PREFILL -i $TESTFILE -o $TESTDIR/grp_dsets_rename.out.h5 grp_dsets grp_rename grp_dsets /grp_rename/grp_dsets
fi
echo "Test copying objects into group hier. that doesn't exist yet in destination file"
TOOLTEST -i $TESTFILE -o $TESTDIR/A_B1_simple.out.h5 -vp -s simple -d /A/B1/simple
TOOLTEST -i $TESTFILE -o $TESTDIR/A_B2_simple2.out.h5 -vp -s simple -d /A/B2/simple2
TOOLTEST -i $TESTFILE -o $TESTDIR/C_D_simple.out.h5 -vp -s /grp_dsets/simple -d /C/D/simple
if test $USE_FILTER_DEFLATE = "yes" ; then
TOOLTEST -i $TESTFILE -o $TESTDIR/E_F_grp_dsets.out.h5 -vp -s /grp_dsets -d /E/F/grp_dsets
TOOLTEST -i $TESTFILE -o $TESTDIR/G_H_grp_nested.out.h5 -vp -s /grp_nested -d /G/H/grp_nested
fi
}
# Copy references in various way.
#
# Assumed arguments:
# <none>
COPY_REFERENCES()
{
TESTFILE="$TESTDIR/h5copy_ref.h5"
echo "Test copying object and region references"
TOOLTEST -f ref -i $TESTFILE -o $TESTDIR/region_ref.out.h5 -v -s / -d /COPY
}
# Copy external links.
# adding to the destination file each time compare the result
#
# Assumed arguments:
# <none>
COPY_EXT_LINKS()
{
TESTFILE="$TESTDIR/h5copy_extlinks_src.h5"
echo "Test copying external link directly without -f ext"
TOOLTEST -v -i $TESTFILE -o $TESTDIR/ext_link.out.h5 -s /group_ext/extlink_dset -d /copy1_dset
echo "Test copying external link directly with -f ext"
TOOLTEST -f ext -i $TESTFILE -o $TESTDIR/ext_link_f.out.h5 -v -s /group_ext/extlink_dset -d /copy2_dset
echo "Test copying dangling external link (no obj) directly without -f ext"
TOOLTEST -v -i $TESTFILE -o $TESTDIR/ext_dangle_noobj.out.h5 -s /group_ext/extlink_notyet1 -d /copy_dangle1_1
echo "Test copying dangling external link (no obj) directly with -f ext"
TOOLTEST -f ext -i $TESTFILE -o $TESTDIR/ext_dangle_noobj_f.out.h5 -v -s /group_ext/extlink_notyet1 -d /copy_dangle1_2
echo "Test copying dangling external link (no file) directly without -f ext"
TOOLTEST -v -i $TESTFILE -o $TESTDIR/ext_dangle_nofile.out.h5 -s /group_ext/extlink_notyet2 -d /copy_dangle2_1
echo "Test copying dangling external link (no file) directly with -f ext"
TOOLTEST -f ext -i $TESTFILE -o $TESTDIR/ext_dangle_nofile_f.out.h5 -v -s /group_ext/extlink_notyet2 -d /copy_dangle2_2
echo "Test copying a group contains external links without -f ext"
TOOLTEST -v -i $TESTFILE -o $TESTDIR/ext_link_group.out.h5 -s /group_ext -d /copy1_group
echo "Test copying a group contains external links with -f ext"
TOOLTEST -f ext -i $TESTFILE -o $TESTDIR/ext_link_group_f.out.h5 -v -s /group_ext -d /copy2_group
}
# Test misc.
#
# Assumed arguments:
# <none>
TEST_MISC()
{
TESTFILE="$TESTDIR/h5copytst.h5"
echo "Test copying object into group which doesn't exist, without -p"
TOOLTEST_FAIL h5copy_misc1.out -i $TESTFILE -o $TESTDIR/h5copy_misc1.out.h5 -v -s /simple -d /g1/g2/simple
echo "Test copying objects to the same file "
TOOLTEST_SAME -i $TESTFILE -o $TESTDIR/samefile1.out.h5 /simple /simple_cp
if test $USE_FILTER_DEFLATE = "yes" ; then
TOOLTEST_SAME -i $TESTFILE -o $TESTDIR/samefile2.out.h5 /grp_dsets /grp_dsets_cp
fi
}
##############################################################################
### T H E T E S T S ###
##############################################################################
# prepare for test
COPY_TESTFILES_TO_TESTDIR
# Start tests
COPY_OBJECTS
COPY_REFERENCES
COPY_EXT_LINKS
TEST_MISC
# Clean up temporary files/directories
CLEAN_TESTFILES_AND_TESTDIR
if test $nerrors -eq 0 ; then
echo "All $TESTNAME tests passed."
exit $EXIT_SUCCESS
else
echo "$TESTNAME tests failed with $nerrors errors."
exit $EXIT_FAILURE
fi
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