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Bug Fix/Code Cleanup/Doc Cleanup/Optimization/Branch Sync :-) Description: Generally speaking, this is the "signed->unsigned" change to selections. However, in the process of merging code back, things got stickier and stickier until I ended up doing a big "sync the two branches up" operation. So... I brought back all the "infrastructure" fixes from the development branch to the release branch (which I think were actually making some improvement in performance) as well as fixed several bugs which had been fixed in one branch, but not the other. I've also tagged the repository before making this checkin with the label "before_signed_unsigned_changes". Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel & fphdf5 FreeBSD 4.10 (sleipnir) w/threadsafe FreeBSD 4.10 (sleipnir) w/backward compatibility Solaris 2.7 (arabica) w/"purify options" Solaris 2.8 (sol) w/FORTRAN & C++ AIX 5.x (copper) w/parallel & FORTRAN IRIX64 6.5 (modi4) w/FORTRAN Linux 2.4 (heping) w/FORTRAN & C++ Misc. update:
300 lines
7.5 KiB
C
300 lines
7.5 KiB
C
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the files COPYING and Copyright.html. COPYING can be found at the root *
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* of the source code distribution tree; Copyright.html can be found at the *
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* root level of an installed copy of the electronic HDF5 document set and *
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* is linked from the top-level documents page. It can also be found at *
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* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
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* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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#include <stdio.h>
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#include <stdlib.h>
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#include "h5tools_ref.h"
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#include "H5private.h"
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#include "h5tools.h"
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#include "h5tools_utils.h"
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/*
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* Table to look up a path name for an object
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* reference.
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*
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* This table stores mappings of reference -> path
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* for all objects in the file that may be the target of
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* an object reference.
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*
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* The 'path' is an absolute path by which the object
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* can be accessed. When an object has > 1 such path,
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* only one will be used in the table, with no particular
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* method of selecting which one.
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*/
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extern hid_t thefile;
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extern char *prefix;
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extern char *progname;
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extern int d_status;
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ref_path_table_entry_t *ref_path_table = NULL; /* the table */
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/*-------------------------------------------------------------------------
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* Function: ref_path_table_lookup
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*
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* Purpose: Looks up a table entry given a path name.
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* Used during construction of the table.
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*
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* Return: The table entre (pte) or NULL if not in the
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* table.
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*
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* Programmer: REMcG
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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ref_path_table_entry_t *
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ref_path_table_lookup(const char *thepath)
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{
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H5G_stat_t sb;
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ref_path_table_entry_t *pte = ref_path_table;
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if(H5Gget_objinfo(thefile, thepath, TRUE, &sb)<0)
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/* fatal error ? */
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return NULL;
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while(pte!=NULL) {
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if (sb.objno==pte->statbuf.objno)
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return pte;
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pte = pte->next;
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}
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return NULL;
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}
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/*-------------------------------------------------------------------------
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* Function: ref_path_table_put
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*
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* Purpose: Enter the 'obj' with 'path' in the table if
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* not already there.
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* Create an object reference, pte, and store them
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* in the table.
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*
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* Return: The object reference for the object.
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*
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* Programmer: REMcG
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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ref_path_table_entry_t *
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ref_path_table_put(hid_t obj, const char *path)
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{
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ref_path_table_entry_t *pte;
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/* look up 'obj'. If already in table, return */
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pte = ref_path_table_lookup(path);
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if (pte != NULL)
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return pte;
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/* if not found, then make new entry */
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pte = (ref_path_table_entry_t *) malloc(sizeof(ref_path_table_entry_t));
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if (pte == NULL)
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/* fatal error? */
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return NULL;
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pte->obj = obj;
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pte->apath = HDstrdup(path);
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if(H5Gget_objinfo(thefile, path, TRUE, &pte->statbuf)<0) {
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/* fatal error? */
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free(pte);
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return NULL;
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}
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pte->next = ref_path_table;
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ref_path_table = pte;
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return pte;
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}
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/*
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* counter used to disambiguate multiple instances of same object.
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*/
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int xid = 1;
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int get_next_xid() {
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return xid++;
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}
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/*
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* This counter is used to create fake object ID's
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* The idea is to set it to the largest possible offest, which
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* minimizes the chance of collision with a real object id.
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*
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*/
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haddr_t fake_xid = HADDR_MAX;
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haddr_t
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get_fake_xid () {
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return (fake_xid--);
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}
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/*
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* for an object that does not have an object id (e.g., soft link),
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* create a table entry with a fake object id as the key.
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*/
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ref_path_table_entry_t *
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ref_path_table_gen_fake(const char *path)
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{
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ref_path_table_entry_t *pte;
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/* look up 'obj'. If already in table, return */
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pte = ref_path_table_lookup(path);
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if (pte != NULL)
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return pte;
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/* if not found, then make new entry */
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pte = (ref_path_table_entry_t *) malloc(sizeof(ref_path_table_entry_t));
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if (pte == NULL)
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/* fatal error? */
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return NULL;
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pte->obj = (hid_t)-1;
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memset(&pte->statbuf,0,sizeof(H5G_stat_t));
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pte->statbuf.objno = get_fake_xid();
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pte->apath = HDstrdup(path);
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pte->next = ref_path_table;
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ref_path_table = pte;
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return pte;
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}
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/*-------------------------------------------------------------------------
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* Function: lookup_ref_path
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*
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* Purpose: Lookup the path to the object with refernce 'ref'.
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*
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* Return: Return a path to the object, or NULL if not found.
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*
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* Programmer: REMcG
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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char *
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lookup_ref_path(hobj_ref_t ref)
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{
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ref_path_table_entry_t *pte = ref_path_table;
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while(pte!=NULL) {
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if (ref==pte->statbuf.objno)
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return pte->apath;
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pte = pte->next;
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}
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return NULL;
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}
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/*-------------------------------------------------------------------------
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* Function: fill_ref_path_table
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*
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* Purpose: Called by interator to create references for
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* all objects and enter them in the table.
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*
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* Return: Error status.
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*
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* Programmer: REMcG
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*
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* Modifications:
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*
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*-------------------------------------------------------------------------
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*/
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herr_t
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fill_ref_path_table(hid_t group, const char *name, void UNUSED * op_data)
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{
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hid_t obj;
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char *tmp;
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H5G_stat_t statbuf;
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ref_path_table_entry_t *pte;
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char *thepath;
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H5Gget_objinfo(group, name, FALSE, &statbuf);
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tmp = (char *) malloc(strlen(prefix) + strlen(name) + 2);
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if (tmp == NULL)
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return FAIL;
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thepath = (char *) malloc(strlen(prefix) + strlen(name) + 2);
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if (thepath == NULL) {
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free(tmp);
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return FAIL;
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}
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strcpy(tmp, prefix);
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strcpy(thepath, prefix);
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strcat(thepath, "/");
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strcat(thepath, name);
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switch (statbuf.type) {
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case H5G_DATASET:
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if ((obj = H5Dopen(group, name)) >= 0) {
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pte = ref_path_table_lookup(thepath);
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if (pte == NULL)
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ref_path_table_put(obj, thepath);
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H5Dclose(obj);
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} else {
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error_msg(progname, "unable to get dataset \"%s\"\n", name);
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d_status = EXIT_FAILURE;
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}
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break;
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case H5G_GROUP:
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if ((obj = H5Gopen(group, name)) >= 0) {
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strcat(strcat(prefix, "/"), name);
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pte = ref_path_table_lookup(thepath);
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if (pte == NULL) {
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ref_path_table_put(obj, thepath);
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H5Giterate(obj, ".", NULL, fill_ref_path_table, NULL);
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strcpy(prefix, tmp);
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}
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H5Gclose(obj);
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} else {
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error_msg(progname, "unable to dump group \"%s\"\n", name);
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d_status = EXIT_FAILURE;
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}
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break;
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case H5G_TYPE:
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if ((obj = H5Topen(group, name)) >= 0) {
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pte = ref_path_table_lookup(thepath);
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if (pte == NULL)
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ref_path_table_put(obj, thepath);
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H5Tclose(obj);
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} else {
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error_msg(progname, "unable to get dataset \"%s\"\n", name);
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d_status = EXIT_FAILURE;
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}
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break;
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default:
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break;
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}
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free(tmp);
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free(thepath);
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return 0;
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}
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