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3956 lines
147 KiB
C
3956 lines
147 KiB
C
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* Copyright by the Board of Trustees of the University of Illinois. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the files COPYING and Copyright.html. COPYING can be found at the root *
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* of the source code distribution tree; Copyright.html can be found at the *
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* root level of an installed copy of the electronic HDF5 document set and *
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* is linked from the top-level documents page. It can also be found at *
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* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
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* access to either file, you may request a copy from help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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/*
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* Programmer: Robb Matzke <matzke@llnl.gov>
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* Thursday, July 23, 1998
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*
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* Purpose: A library for displaying the values of a dataset in a human
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* readable format.
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*/
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#include <stdio.h>
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#include <stdlib.h>
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#include "h5tools.h"
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#include "h5tools_dump.h"
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#include "h5tools_ref.h"
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#include "h5tools_utils.h"
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#include "H5private.h"
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#define SANITY_CHECK
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#define ALIGN(A,Z) ((((A) + (Z) - 1) / (Z)) * (Z))
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h5tool_format_t h5tools_dataformat = {
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0, /*raw */
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"", /*fmt_raw */
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"%d", /*fmt_int */
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"%u", /*fmt_uint */
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"%hhd", /*fmt_schar */
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"%u", /*fmt_uchar */
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"%d", /*fmt_short */
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"%u", /*fmt_ushort */
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"%ld", /*fmt_long */
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"%lu", /*fmt_ulong */
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NULL, /*fmt_llong */
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NULL, /*fmt_ullong */
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"%g", /*fmt_double */
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"%g", /*fmt_float */
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0, /*ascii */
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0, /*str_locale */
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0, /*str_repeat */
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"[ ", /*arr_pre */
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",", /*arr_sep */
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" ]", /*arr_suf */
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1, /*arr_linebreak */
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"", /*cmpd_name */
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",\n", /*cmpd_sep */
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"{", /*cmpd_pre */
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"}", /*cmpd_suf */
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"\n", /*cmpd_end */
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", ", /*vlen_sep */
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"(", /*vlen_pre */
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")", /*vlen_suf */
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"", /*vlen_end */
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"%s", /*elmt_fmt */
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",", /*elmt_suf1 */
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" ", /*elmt_suf2 */
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"", /*idx_n_fmt */
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"", /*idx_sep */
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"", /*idx_fmt */
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80, /*line_ncols *//*standard default columns */
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0, /*line_per_line */
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"", /*line_pre */
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"%s", /*line_1st */
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"%s", /*line_cont */
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"", /*line_suf */
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"", /*line_sep */
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1, /*line_multi_new */
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" ", /*line_indent */
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1, /*skip_first */
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1, /*obj_hidefileno */
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" "H5_PRINTF_HADDR_FMT, /*obj_format */
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1, /*dset_hidefileno */
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"DATASET %s ", /*dset_format */
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"%s", /*dset_blockformat_pre */
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"%s", /*dset_ptformat_pre */
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"%s", /*dset_ptformat */
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1, /*array indices */
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1 /*escape non printable characters */
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};
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const h5tools_dump_header_t h5tools_standardformat = {
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"standardformat", /*name */
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"HDF5", /*fileebgin */
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"", /*fileend */
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SUPER_BLOCK, /*bootblockbegin */
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"", /*bootblockend */
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H5_TOOLS_GROUP, /*groupbegin */
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"", /*groupend */
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H5_TOOLS_DATASET, /*datasetbegin */
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"", /*datasetend */
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ATTRIBUTE, /*attributebegin */
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"", /*attributeend */
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H5_TOOLS_DATATYPE, /*datatypebegin */
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"", /*datatypeend */
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DATASPACE, /*dataspacebegin */
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"", /*dataspaceend */
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DATA, /*databegin */
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"", /*dataend */
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SOFTLINK, /*softlinkbegin */
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"", /*softlinkend */
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EXTLINK, /*extlinkbegin */
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"", /*extlinkend */
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UDLINK, /*udlinkbegin */
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"", /*udlinkend */
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SUBSET, /*subsettingbegin */
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"", /*subsettingend */
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START, /*startbegin */
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"", /*startend */
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STRIDE, /*stridebegin */
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"", /*strideend */
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COUNT, /*countbegin */
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"", /*countend */
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BLOCK, /*blockbegin */
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"", /*blockend */
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"{", /*fileblockbegin */
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"}", /*fileblockend */
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"{", /*bootblockblockbegin */
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"}", /*bootblockblockend */
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"{", /*groupblockbegin */
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"}", /*groupblockend */
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"{", /*datasetblockbegin */
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"}", /*datasetblockend */
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"{", /*attributeblockbegin */
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"}", /*attributeblockend */
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"", /*datatypeblockbegin */
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"", /*datatypeblockend */
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"", /*dataspaceblockbegin */
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"", /*dataspaceblockend */
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"{", /*datablockbegin */
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"}", /*datablockend */
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"{", /*softlinkblockbegin */
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"}", /*softlinkblockend */
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"{", /*extlinkblockbegin */
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"}", /*extlinkblockend */
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"{", /*udlinkblockbegin */
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"}", /*udlinkblockend */
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"{", /*strblockbegin */
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"}", /*strblockend */
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"{", /*enumblockbegin */
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"}", /*enumblockend */
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"{", /*structblockbegin */
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"}", /*structblockend */
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"{", /*vlenblockbegin */
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"}", /*vlenblockend */
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"{", /*subsettingblockbegin */
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"}", /*subsettingblockend */
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"(", /*startblockbegin */
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");", /*startblockend */
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"(", /*strideblockbegin */
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");", /*strideblockend */
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"(", /*countblockbegin */
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");", /*countblockend */
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"(", /*blockblockbegin */
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");", /*blockblockend */
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"", /*dataspacedescriptionbegin */
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"", /*dataspacedescriptionend */
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"(", /*dataspacedimbegin */
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")", /*dataspacedimend */
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};
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const h5tools_dump_header_t* h5tools_dump_header_format;
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table_t *h5dump_type_table = NULL; /*type table reference for datatype dump */
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/* local prototypes */
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static int h5tools_print_region_data_blocks(hid_t region_id,
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FILE *stream, const h5tool_format_t *info, h5tools_context_t *cur_ctx,
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h5tools_str_t *buffer/*string into which to render */, size_t ncols,
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int ndims, hid_t type_id, hssize_t nblocks, hsize_t *ptdata);
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hbool_t h5tools_dump_region_data_points(hid_t region_space, hid_t region_id,
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FILE *stream, const h5tool_format_t *info,
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h5tools_context_t *ctx/*in,out*/,
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h5tools_str_t *buffer/*string into which to render */,
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hsize_t *curr_pos/*total data element position*/,
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size_t ncols, hsize_t region_elmt_counter/*element counter*/,
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hsize_t elmt_counter);
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int h5tools_print_region_data_points(hid_t region_space, hid_t region_id,
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FILE *stream, const h5tool_format_t *info, h5tools_context_t *cur_ctx,
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h5tools_str_t *buffer, size_t ncols,
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int ndims, hid_t type_id, hssize_t npoints, hsize_t *ptdata);
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hbool_t h5tools_dump_region_data_blocks(hid_t region_space, hid_t region_id,
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FILE *stream, const h5tool_format_t *info,
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h5tools_context_t *ctx/*in,out*/,
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h5tools_str_t *buffer/*string into which to render */,
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hsize_t *curr_pos/*total data element position*/,
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size_t ncols, hsize_t region_elmt_counter/*element counter*/,
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hsize_t elmt_counter);
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void
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h5tools_dump_init(void)
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{
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h5tools_dump_header_format = &h5tools_standardformat;
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}
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/*-------------------------------------------------------------------------
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* Audience: Public
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* Chapter: H5Tools Library
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* Purpose: Prints NELMTS data elements to output STREAM.
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* Description:
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* Prints some (NELMTS) data elements to output STREAM. The elements are
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* stored in _MEM as type TYPE and are printed according to the format
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* described in INFO. The CTX struct contains context information shared
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* between calls to this function. The FLAGS is a bit field that
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* indicates whether the data supplied in this call falls at the
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* beginning or end of the total data to be printed (START_OF_DATA and
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* END_OF_DATA).
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* Return: Success: SUCCEED
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* Failure: FAIL
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* Programmer:
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* Robb Matzke, Monday, April 26, 1999
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* Modifications:
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* Robb Matzke, 1999-06-04
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* The `container' argument is the optional dataset for reference types.
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*
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* Robb Matzke, 1999-09-29
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* Understands the `per_line' property which indicates that every Nth
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* element should begin a new line.
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*
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* Robb Matzke, LLNL, 2003-06-05
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* Do not dereference the memory for a variable-length string here.
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* Deref in h5tools_str_sprint() instead so recursive types are
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* handled correctly.
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*
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* Pedro Vicente Nunes, The HDF Group, 2005-10-19
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* pass to the prefix in h5tools_simple_prefix the total position
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* instead of the current stripmine position i; this is necessary
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* to print the array indices
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* new field sm_pos in h5tools_context_t, the current stripmine element position
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*-------------------------------------------------------------------------
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*/
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int
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h5tools_dump_simple_data(FILE *stream, const h5tool_format_t *info, hid_t container,
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h5tools_context_t *ctx/*in,out*/, unsigned flags,
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hsize_t nelmts, hid_t type, void *_mem)
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{
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int ret_value = 0; /*no need to LEAVE() on ERROR: HERR_INIT(int, SUCCEED) */
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unsigned char *mem = (unsigned char*) _mem;
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hsize_t i; /*element counter */
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size_t size; /*size of each datum */
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hid_t region_space = -1;
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hid_t region_id = -1;
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hbool_t dimension_break = TRUE;
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H5S_sel_type region_type;
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size_t ncols = 80; /*available output width */
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h5tools_str_t buffer; /*string into which to render */
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hsize_t curr_pos = 0; /* total data element position */
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hsize_t elmt_counter = 0;/*counts the # elements printed.
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*I (ptl?) needed something that
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*isn't going to get reset when a new
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*line is formed. I'm going to use
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*this var to count elements and
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*break after we see a number equal
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*to the ctx->size_last_dim. */
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/* binary dump */
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if (bin_output) {
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do_bin_output(rawdatastream, rawoutstream, container, nelmts, type, _mem);
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} /* end if */
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else {
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/* setup */
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HDmemset(&buffer, 0, sizeof(h5tools_str_t));
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size = H5Tget_size(type);
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if (info->line_ncols > 0)
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ncols = info->line_ncols;
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/* pass to the prefix in h5tools_simple_prefix the total position
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* instead of the current stripmine position i; this is necessary
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* to print the array indices
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*/
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curr_pos = ctx->sm_pos;
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if (region_output && H5Tequal(type, H5T_STD_REF_DSETREG)) {
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for (i = 0; i < nelmts; i++, ctx->cur_elmt++, elmt_counter++) {
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void* memref = mem + i * size;
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char ref_name[1024];
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/* region data */
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region_id = H5Rdereference2(container, H5P_DEFAULT, H5R_DATASET_REGION, memref);
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if (region_id >= 0) {
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region_space = H5Rget_region(container, H5R_DATASET_REGION, memref);
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if (region_space >= 0) {
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if (h5tools_is_zero(memref, H5Tget_size(type))) {
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ctx->need_prefix = TRUE;
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h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
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/* Render the region element begin */
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h5tools_str_reset(&buffer);
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h5tools_str_append(&buffer, "NULL");
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dimension_break = h5tools_render_element(stream, info,
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ctx, &buffer, &curr_pos, ncols, i, elmt_counter);
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}
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else {
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if(H5Rget_name(region_id, H5R_DATASET_REGION, memref, (char*) ref_name, 1024)<0)
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HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Rget_name failed");
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ctx->need_prefix = TRUE;
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h5tools_simple_prefix(stream, info, ctx, curr_pos+i, 0);
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/* Render the region element begin */
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h5tools_str_reset(&buffer);
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h5tools_str_append(&buffer, info->dset_format, ref_name);
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dimension_break = h5tools_render_element(stream, info,
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ctx, &buffer, &curr_pos, ncols, i, elmt_counter);
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region_type = H5Sget_select_type(region_space);
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if(region_type == H5S_SEL_POINTS)
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/* Print point information */
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dimension_break = h5tools_dump_region_data_points(
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region_space, region_id, stream, info, ctx,
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&buffer, &curr_pos, ncols, i, elmt_counter);
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else if(region_type == H5S_SEL_HYPERSLABS)
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/* Print block information */
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dimension_break = h5tools_dump_region_data_blocks(
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region_space, region_id, stream, info, ctx,
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&buffer, &curr_pos, ncols, i, elmt_counter);
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else
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HERROR(H5E_tools_g, H5E_tools_min_id_g, "invalid region type");
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/* Render the region element end */
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} /* end else to if (h5tools_is_zero(... */
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if(H5Sclose(region_space) < 0)
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HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose failed");
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} /* end if (region_space >= 0) */
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else
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HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Rget_region failed");
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if(H5Dclose(region_id) < 0)
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HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Dclose failed");
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} /* if (region_id >= 0) */
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else {
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/* if (region_id < 0) - could mean that no reference was written do not throw failure */
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H5Epush2(H5tools_ERR_STACK_g, __FILE__, FUNC, __LINE__, H5tools_ERR_CLS_g, H5E_tools_g, H5E_tools_min_id_g, "H5Rdereference failed");
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}
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ctx->need_prefix = TRUE;
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if(FALSE == dimension_break)
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elmt_counter = 0;
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} /* end for (i = 0; i < nelmts... */
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} /* end if (region_output... */
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else {
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for (i = 0; i < nelmts; i++, ctx->cur_elmt++, elmt_counter++) {
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void* memref = mem + i * size;
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/* Render the data element begin*/
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h5tools_str_reset(&buffer);
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h5tools_str_sprint(&buffer, info, container, type, memref, ctx);
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if (i + 1 < nelmts || (flags & END_OF_DATA) == 0)
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h5tools_str_append(&buffer, "%s", OPT(info->elmt_suf1, ","));
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dimension_break = h5tools_render_element(stream, info, ctx, &buffer,
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&curr_pos, ncols, i, elmt_counter);
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/* Render the data element end*/
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if(FALSE == dimension_break)
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elmt_counter = 0;
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} /* end for (i = 0; i < nelmts... */
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}
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h5tools_str_close(&buffer);
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}/* else bin */
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return ret_value;
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}
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/*-------------------------------------------------------------------------
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* Audience: Public
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* Chapter: H5Tools Library
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* Purpose: Print the data values from a dataset referenced by region blocks.
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*
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* Description:
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* This is a special case subfunction to print the data in a region reference of type blocks.
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*
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* Return:
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* The function returns FAIL if there was an error, otherwise SUCEED
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*
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* Parameters Description:
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* h5tools_str_t *buffer is the string into which to render
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* size_t ncols
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* int ndims is the number of dimensions of the region element
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* hssize_t nblocks is the number of blocks in the region
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*-------------------------------------------------------------------------
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*/
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static int
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h5tools_print_region_data_blocks(hid_t region_id,
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FILE *stream, const h5tool_format_t *info, h5tools_context_t *cur_ctx,
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h5tools_str_t *buffer/*string into which to render */, size_t ncols,
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int ndims, hid_t type_id, hssize_t nblocks, hsize_t *ptdata)
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{
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hbool_t dimension_break = TRUE;
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hsize_t *dims1 = NULL;
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hsize_t *start = NULL;
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hsize_t *count = NULL;
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hsize_t blkndx;
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hsize_t total_size[H5S_MAX_RANK];
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hsize_t elmtno; /* elemnt index */
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hsize_t curr_pos = 0;
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unsigned int region_flags; /* buffer extent flags */
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hsize_t numelem;
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hsize_t numindex;
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size_t jndx;
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unsigned indx;
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int type_size;
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int ret_value = SUCCEED;
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hid_t mem_space = -1;
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hid_t sid1 = -1;
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h5tools_context_t ctx;
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void *region_buf = NULL;
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HDassert(info);
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HDassert(cur_ctx);
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HDassert(buffer);
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HDassert(ptdata);
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HDmemset(&ctx, 0, sizeof(ctx));
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/* Get the dataspace of the dataset */
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if((sid1 = H5Dget_space(region_id)) < 0)
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HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dget_space failed");
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/* Allocate space for the dimension array */
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if((dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) == NULL)
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HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for dims");
|
|
|
|
/* find the dimensions of each data space from the block coordinates */
|
|
numelem = 1;
|
|
for (jndx = 0; jndx < ndims; jndx++) {
|
|
dims1[jndx] = ptdata[jndx + ndims] - ptdata[jndx] + 1;
|
|
numelem = dims1[jndx] * numelem;
|
|
}
|
|
|
|
/* Create dataspace for reading buffer */
|
|
if((mem_space = H5Screate_simple(ndims, dims1, NULL)) < 0)
|
|
HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Screate_simple failed");
|
|
|
|
if((type_size = H5Tget_size(type_id)) == 0)
|
|
HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_size failed");
|
|
|
|
if((region_buf = HDmalloc(type_size * (size_t)numelem)) == NULL)
|
|
HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate region buffer");
|
|
|
|
/* Select (x , x , ..., x ) x (y , y , ..., y ) hyperslab for reading memory dataset */
|
|
/* 1 2 n 1 2 n */
|
|
if((start = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) == NULL)
|
|
HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for start");
|
|
|
|
if((count = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) == NULL)
|
|
HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for count");
|
|
|
|
curr_pos = 0;
|
|
ctx.indent_level = cur_ctx->indent_level;
|
|
ctx.cur_column = cur_ctx->cur_column;
|
|
ctx.prev_multiline = cur_ctx->prev_multiline;
|
|
ctx.ndims = ndims;
|
|
for (blkndx = 0; blkndx < nblocks; blkndx++) {
|
|
ctx.need_prefix = TRUE;
|
|
ctx.cur_elmt = 0;
|
|
for (indx = 0; indx < ndims; indx++) {
|
|
start[indx] = ptdata[indx + blkndx * ndims * 2];
|
|
count[indx] = dims1[indx];
|
|
}
|
|
|
|
if(H5Sselect_hyperslab(sid1, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sselect_hyperslab failed");
|
|
|
|
if(H5Dread(region_id, type_id, mem_space, sid1, H5P_DEFAULT, region_buf) < 0)
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Dread failed");
|
|
|
|
ctx.indent_level++;
|
|
if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) < 0)
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed");
|
|
|
|
/* assume entire data space to be printed */
|
|
for (indx = 0; indx < (size_t) ctx.ndims; indx++)
|
|
ctx.p_min_idx[indx] = start[indx];
|
|
init_acc_pos(&ctx, total_size);
|
|
|
|
/* print the data */
|
|
region_flags = START_OF_DATA;
|
|
if (blkndx == nblocks - 1)
|
|
region_flags |= END_OF_DATA;
|
|
|
|
for (indx = 0; indx < (size_t)ctx.ndims; indx++)
|
|
ctx.p_max_idx[indx] = dims1[indx];
|
|
|
|
curr_pos = 0;
|
|
ctx.sm_pos = blkndx*2*ndims;
|
|
ctx.size_last_dim = dims1[ndims-1];
|
|
|
|
h5tools_region_simple_prefix(stream, info, &ctx, curr_pos, ptdata, 0);
|
|
|
|
elmtno = 0;
|
|
for (numindex = 0; numindex < numelem; numindex++, elmtno++, ctx.cur_elmt++) {
|
|
/* Render the region data element begin */
|
|
h5tools_str_reset(buffer);
|
|
|
|
h5tools_str_append(buffer, "%s", numindex ? OPTIONAL_LINE_BREAK "" : "");
|
|
h5tools_str_sprint(buffer, info, region_id, type_id,
|
|
((char*)region_buf + numindex * type_size), &ctx);
|
|
|
|
if (numindex + 1 < numelem || (region_flags & END_OF_DATA) == 0)
|
|
h5tools_str_append(buffer, "%s", OPT(info->elmt_suf1, ","));
|
|
|
|
dimension_break = h5tools_render_region_element(stream, info, &ctx, buffer, &curr_pos,
|
|
ncols, ptdata, numindex, elmtno);
|
|
/* Render the region data element end */
|
|
|
|
if(FALSE == dimension_break)
|
|
elmtno = 0;
|
|
} /* end for (jndx = 0; jndx < numelem; jndx++, region_elmtno++, ctx.cur_elmt++) */
|
|
|
|
ctx.indent_level--;
|
|
} /* end for (blkndx = 0; blkndx < nblocks; blkndx++) */
|
|
|
|
done:
|
|
HDfree(start);
|
|
HDfree(count);
|
|
HDfree(region_buf);
|
|
HDfree(dims1);
|
|
|
|
if(H5Sclose(mem_space) < 0)
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose failed");
|
|
if(H5Sclose(sid1) < 0)
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose failed");
|
|
|
|
return ret_value;
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Audience: Public
|
|
* Chapter: H5Tools Library
|
|
* Purpose: Print some values from a dataset referenced by region blocks.
|
|
*
|
|
* Description:
|
|
* This is a special case subfunction to dump a region reference using blocks.
|
|
*
|
|
* Return:
|
|
* The function returns False if the last dimension has been reached, otherwise True
|
|
*
|
|
* In/Out:
|
|
* h5tools_context_t *ctx
|
|
* hsize_t *curr_pos
|
|
*
|
|
* Parameters Description:
|
|
* h5tools_str_t *buffer is the string into which to render
|
|
* hsize_t curr_pos is the total data element position
|
|
* size_t ncols
|
|
* hsize_t region_elmt_counter is the region element loop counter
|
|
* hsize_t elmt_count is the data element loop counter
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
hbool_t
|
|
h5tools_dump_region_data_blocks(hid_t region_space, hid_t region_id,
|
|
FILE *stream, const h5tool_format_t *info,
|
|
h5tools_context_t *ctx/*in,out*/,
|
|
h5tools_str_t *buffer/*string into which to render */,
|
|
hsize_t *curr_pos/*total data element position*/,
|
|
size_t ncols, hsize_t region_elmt_counter/*element counter*/,
|
|
hsize_t elmt_counter)
|
|
{
|
|
HERR_INIT(hbool_t, TRUE)
|
|
hbool_t dimension_break = TRUE;
|
|
hssize_t nblocks;
|
|
hsize_t alloc_size;
|
|
hsize_t *ptdata = NULL;
|
|
int ndims;
|
|
hid_t dtype = -1;
|
|
hid_t type_id = -1;
|
|
int i;
|
|
|
|
HDassert(info);
|
|
HDassert(ctx);
|
|
HDassert(buffer);
|
|
|
|
if((nblocks = H5Sget_select_hyper_nblocks(region_space)) <= 0)
|
|
H5E_THROW(dimension_break, H5E_tools_min_id_g, "H5Sget_select_hyper_nblocks failed");
|
|
|
|
/* Print block information */
|
|
if((ndims = H5Sget_simple_extent_ndims(region_space)) < 0)
|
|
H5E_THROW(dimension_break, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed");
|
|
|
|
/* Render the region { element begin */
|
|
h5tools_str_reset(buffer);
|
|
|
|
h5tools_str_append(buffer, "{");
|
|
dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter);
|
|
/* Render the region { element end */
|
|
|
|
ctx->indent_level++;
|
|
ctx->need_prefix = TRUE;
|
|
|
|
/* Render the region datatype info and indices element begin */
|
|
h5tools_str_reset(buffer);
|
|
h5tools_str_append(buffer, "REGION_TYPE BLOCK ");
|
|
|
|
alloc_size = nblocks * ndims * 2 * sizeof(ptdata[0]);
|
|
HDassert(alloc_size == (hsize_t) ((size_t) alloc_size)); /*check for overflow*/
|
|
if((ptdata = (hsize_t*) HDmalloc((size_t) alloc_size)) == NULL)
|
|
HGOTO_ERROR(dimension_break, H5E_tools_min_id_g, "Could not allocate buffer for ptdata");
|
|
|
|
H5_CHECK_OVERFLOW(nblocks, hssize_t, hsize_t);
|
|
if(H5Sget_select_hyper_blocklist(region_space, (hsize_t) 0, (hsize_t) nblocks, ptdata) < 0)
|
|
HGOTO_ERROR(dimension_break, H5E_tools_min_id_g, "H5Rget_select_hyper_blocklist failed");
|
|
|
|
for (i = 0; i < nblocks; i++) {
|
|
int j;
|
|
|
|
h5tools_str_append(buffer, info->dset_blockformat_pre,
|
|
i ? "," OPTIONAL_LINE_BREAK " " : "", (unsigned long) i);
|
|
|
|
/* Start coordinates and opposite corner */
|
|
for (j = 0; j < ndims; j++)
|
|
h5tools_str_append(buffer, "%s" HSIZE_T_FORMAT, j ? "," : "(",
|
|
ptdata[i * 2 * ndims + j]);
|
|
|
|
for (j = 0; j < ndims; j++)
|
|
h5tools_str_append(buffer, "%s" HSIZE_T_FORMAT, j ? "," : ")-(",
|
|
ptdata[i * 2 * ndims + j + ndims]);
|
|
|
|
h5tools_str_append(buffer, ")");
|
|
} /* end for (i = 0; i < nblocks; i++) */
|
|
|
|
dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter);
|
|
/* Render the region datatype info and indices element end */
|
|
|
|
ctx->need_prefix = TRUE;
|
|
|
|
if((dtype = H5Dget_type(region_id)) < 0)
|
|
HGOTO_ERROR(dimension_break, H5E_tools_min_id_g, "H5Dget_type failed");
|
|
if((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) < 0)
|
|
HGOTO_ERROR(dimension_break, H5E_tools_min_id_g, "H5Tget_native_type failed");
|
|
|
|
/* Render the datatype element begin */
|
|
h5tools_str_reset(buffer);
|
|
h5tools_str_append(buffer, "%s %s ",
|
|
h5tools_dump_header_format->datatypebegin,
|
|
h5tools_dump_header_format->datatypeblockbegin);
|
|
|
|
ctx->indent_level++;
|
|
h5tools_print_datatype(stream, buffer, info, ctx, dtype, TRUE);
|
|
ctx->indent_level--;
|
|
|
|
if (HDstrlen(h5tools_dump_header_format->datatypeblockend)) {
|
|
h5tools_str_append(buffer, "%s", h5tools_dump_header_format->datatypeblockend);
|
|
if (HDstrlen(h5tools_dump_header_format->datatypeend))
|
|
h5tools_str_append(buffer, " ");
|
|
}
|
|
if (HDstrlen(h5tools_dump_header_format->datatypeend))
|
|
h5tools_str_append(buffer, "%s", h5tools_dump_header_format->datatypeend);
|
|
|
|
dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter);
|
|
/* Render the datatype element end */
|
|
|
|
ctx->need_prefix = TRUE;
|
|
|
|
/* Render the dataspace element begin */
|
|
h5tools_str_reset(buffer);
|
|
h5tools_str_append(buffer, "%s ", h5tools_dump_header_format->dataspacebegin);
|
|
|
|
h5tools_print_dataspace(stream, buffer, info, ctx, region_space);
|
|
|
|
if (HDstrlen(h5tools_dump_header_format->dataspaceblockend)) {
|
|
h5tools_str_append(buffer, "%s", h5tools_dump_header_format->dataspaceblockend);
|
|
if (HDstrlen(h5tools_dump_header_format->dataspaceend))
|
|
h5tools_str_append(buffer, " ");
|
|
}
|
|
if (HDstrlen(h5tools_dump_header_format->dataspaceend))
|
|
h5tools_str_append(buffer, "%s", h5tools_dump_header_format->dataspaceblockend);
|
|
|
|
dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter);
|
|
/* Render the dataspace element end */
|
|
|
|
ctx->need_prefix = TRUE;
|
|
|
|
/* Render the databegin element begin */
|
|
h5tools_str_reset(buffer);
|
|
h5tools_str_append(buffer, "%s %s ",
|
|
h5tools_dump_header_format->databegin,
|
|
h5tools_dump_header_format->datablockbegin);
|
|
dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter);
|
|
/* Render the databegin element end */
|
|
|
|
ctx->need_prefix = TRUE;
|
|
|
|
h5tools_print_region_data_blocks(region_id, rawdatastream, info, ctx,
|
|
buffer, ncols, ndims, type_id, nblocks, ptdata);
|
|
|
|
done:
|
|
HDfree(ptdata);
|
|
|
|
if(H5Tclose(type_id) < 0)
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed");
|
|
|
|
if(H5Tclose(dtype) < 0)
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed");
|
|
|
|
ctx->need_prefix = TRUE;
|
|
|
|
/* Render the dataend element begin */
|
|
h5tools_str_reset(buffer);
|
|
h5tools_str_append(buffer, "%s %s ",
|
|
h5tools_dump_header_format->dataend,
|
|
h5tools_dump_header_format->datablockend);
|
|
dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos,
|
|
ncols, region_elmt_counter, elmt_counter);
|
|
/* Render the dataend element end */
|
|
|
|
ctx->indent_level--;
|
|
ctx->need_prefix = TRUE;
|
|
|
|
/* Render the region } element begin */
|
|
h5tools_str_reset(buffer);
|
|
h5tools_str_append(buffer, "}");
|
|
dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos,
|
|
ncols, region_elmt_counter, elmt_counter);
|
|
/* Render the region } element end */
|
|
|
|
H5_LEAVE(dimension_break)
|
|
|
|
CATCH
|
|
return ret_value;
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Audience: Public
|
|
* Chapter: H5Tools Library
|
|
* Purpose: Print the data values from a dataset referenced by region points.
|
|
*
|
|
* Description:
|
|
* This is a special case subfunction to print the data in a region reference of type points.
|
|
*
|
|
* Return:
|
|
* The function returns FAIL on error, otherwise SUCCEED
|
|
*
|
|
* Parameters Description:
|
|
* h5tools_str_t *buffer is the string into which to render
|
|
* size_t ncols
|
|
* int ndims is the number of dimensions of the region element
|
|
* hssize_t npoints is the number of points in the region
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
int
|
|
h5tools_print_region_data_points(hid_t region_space, hid_t region_id,
|
|
FILE *stream, const h5tool_format_t *info, h5tools_context_t *cur_ctx,
|
|
h5tools_str_t *buffer, size_t ncols,
|
|
int ndims, hid_t type_id, hssize_t npoints, hsize_t *ptdata)
|
|
{
|
|
hbool_t dimension_break = TRUE;
|
|
hsize_t *dims1 = NULL;
|
|
hsize_t elmtno; /* elemnt index */
|
|
hsize_t curr_pos = 0;
|
|
hsize_t total_size[H5S_MAX_RANK];
|
|
size_t jndx;
|
|
unsigned indx;
|
|
int type_size;
|
|
int ret_value = SUCCEED;
|
|
unsigned int region_flags; /* buffer extent flags */
|
|
hid_t mem_space = -1;
|
|
void *region_buf = NULL;
|
|
h5tools_context_t ctx;
|
|
|
|
HDassert(info);
|
|
HDassert(cur_ctx);
|
|
HDassert(buffer);
|
|
HDassert(ptdata);
|
|
|
|
HDmemset(&ctx, 0, sizeof(ctx));
|
|
/* Allocate space for the dimension array */
|
|
if((dims1 = (hsize_t *) HDmalloc(sizeof(hsize_t) * ndims)) == NULL)
|
|
HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for dims");
|
|
|
|
dims1[0] = npoints;
|
|
|
|
/* Create dataspace for reading buffer */
|
|
if((mem_space = H5Screate_simple(1, dims1, NULL)) < 0)
|
|
HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Screate_simple failed");
|
|
|
|
if((type_size = H5Tget_size(type_id)) == 0)
|
|
HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Tget_size failed");
|
|
|
|
if((region_buf = HDmalloc(type_size * (size_t)npoints)) == NULL)
|
|
HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for region");
|
|
|
|
curr_pos = 0;
|
|
ctx.indent_level = cur_ctx->indent_level;
|
|
ctx.cur_column = cur_ctx->cur_column;
|
|
ctx.prev_multiline = cur_ctx->prev_multiline;
|
|
ctx.ndims = ndims;
|
|
|
|
if(H5Dread(region_id, type_id, mem_space, region_space, H5P_DEFAULT, region_buf) < 0)
|
|
HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "H5Dread failed");
|
|
|
|
elmtno = 0;
|
|
for (jndx = 0; jndx < npoints; jndx++, elmtno++) {
|
|
ctx.need_prefix = TRUE;
|
|
ctx.cur_elmt = 0; /* points are always 0 */
|
|
|
|
ctx.indent_level++;
|
|
if(H5Sget_simple_extent_dims(mem_space, total_size, NULL) < 0)
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed");
|
|
|
|
/* assume entire data space to be printed */
|
|
for (indx = 0; indx < (size_t) ctx.ndims; indx++)
|
|
ctx.p_min_idx[indx] = 0;
|
|
init_acc_pos(&ctx, total_size);
|
|
|
|
/* print the data */
|
|
region_flags = START_OF_DATA;
|
|
if (jndx == npoints - 1)
|
|
region_flags |= END_OF_DATA;
|
|
|
|
for (indx = 0; indx < (size_t)ctx.ndims; indx++)
|
|
ctx.p_max_idx[indx] = cur_ctx->p_max_idx[indx];
|
|
|
|
ctx.sm_pos = jndx * ndims;
|
|
if (ctx.ndims > 0) {
|
|
ctx.size_last_dim = (int) (ctx.p_max_idx[ctx.ndims - 1]);
|
|
}
|
|
else
|
|
ctx.size_last_dim = 0;
|
|
|
|
curr_pos = 0; /* points requires constant 0 */
|
|
h5tools_region_simple_prefix(stream, info, &ctx, curr_pos, ptdata, 0);
|
|
|
|
/* Render the point element begin */
|
|
h5tools_str_reset(buffer);
|
|
|
|
h5tools_str_append(buffer, "%s", jndx ? OPTIONAL_LINE_BREAK "" : "");
|
|
h5tools_str_sprint(buffer, info, region_id, type_id,
|
|
((char*)region_buf + jndx * type_size), &ctx);
|
|
|
|
if (jndx + 1 < npoints || (region_flags & END_OF_DATA) == 0)
|
|
h5tools_str_append(buffer, "%s", OPT(info->elmt_suf1, ","));
|
|
|
|
dimension_break = h5tools_render_region_element(stream, info, &ctx, buffer, &curr_pos,
|
|
ncols, ptdata, (hsize_t)0, elmtno);
|
|
/* Render the point element end */
|
|
if(FALSE == dimension_break)
|
|
elmtno = 0;
|
|
|
|
ctx.indent_level--;
|
|
} /* end for (jndx = 0; jndx < npoints; jndx++, elmtno++) */
|
|
|
|
done:
|
|
HDfree(region_buf);
|
|
HDfree(dims1);
|
|
|
|
if(H5Sclose(mem_space) < 0)
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose failed");
|
|
|
|
return ret_value;
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Audience: Public
|
|
* Chapter: H5Tools Library
|
|
* Purpose: Print some values from a dataset referenced by region points.
|
|
*
|
|
* Description:
|
|
* This is a special case subfunction to dump a region reference using points.
|
|
*
|
|
* Return:
|
|
* The function returns False if the last dimension has been reached, otherwise True
|
|
*
|
|
* In/Out:
|
|
* h5tools_context_t *ctx
|
|
* hsize_t *curr_pos
|
|
*
|
|
* Parameters Description:
|
|
* h5tools_str_t *buffer is the string into which to render
|
|
* hsize_t curr_pos is the total data element position
|
|
* size_t ncols
|
|
* hsize_t region_elmt_counter is the region element loop counter
|
|
* hsize_t elmt_count is the data element loop counter
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
hbool_t
|
|
h5tools_dump_region_data_points(hid_t region_space, hid_t region_id,
|
|
FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx,
|
|
h5tools_str_t *buffer, hsize_t *curr_pos, size_t ncols, hsize_t region_elmt_counter,
|
|
hsize_t elmt_counter) {
|
|
HERR_INIT(hbool_t, TRUE)
|
|
hbool_t dimension_break = TRUE;
|
|
hssize_t npoints;
|
|
hsize_t alloc_size;
|
|
hsize_t *ptdata;
|
|
int ndims;
|
|
hssize_t indx;
|
|
hid_t dtype;
|
|
hid_t type_id;
|
|
|
|
HDassert(info);
|
|
HDassert(ctx);
|
|
HDassert(buffer);
|
|
|
|
if((npoints = H5Sget_select_elem_npoints(region_space)) <= 0)
|
|
H5E_THROW(dimension_break, H5E_tools_min_id_g, "H5Sget_select_elem_npoints failed");
|
|
|
|
/* Allocate space for the dimension array */
|
|
if((ndims = H5Sget_simple_extent_ndims(region_space)) < 0)
|
|
H5E_THROW(dimension_break, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed");
|
|
|
|
/* Render the region { element begin */
|
|
h5tools_str_reset(buffer);
|
|
|
|
h5tools_str_append(buffer, "{");
|
|
dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter);
|
|
/* Render the region { element end */
|
|
|
|
/* Render the region datatype info and indices element begin */
|
|
h5tools_str_reset(buffer);
|
|
|
|
ctx->indent_level++;
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_str_append(buffer, "REGION_TYPE POINT ");
|
|
|
|
alloc_size = npoints * ndims * sizeof(ptdata[0]);
|
|
HDassert(alloc_size == (hsize_t) ((size_t) alloc_size)); /*check for overflow*/
|
|
if(NULL == (ptdata = (hsize_t *)HDmalloc((size_t) alloc_size)))
|
|
HGOTO_ERROR(dimension_break, H5E_tools_min_id_g, "Could not allocate buffer for ptdata");
|
|
|
|
H5_CHECK_OVERFLOW(npoints, hssize_t, hsize_t);
|
|
if(H5Sget_select_elem_pointlist(region_space, (hsize_t) 0, (hsize_t) npoints, ptdata) < 0)
|
|
HGOTO_ERROR(dimension_break, H5E_tools_min_id_g, "H5Sget_select_elem_pointlist failed");
|
|
|
|
for (indx = 0; indx < npoints; indx++) {
|
|
int loop_indx;
|
|
|
|
h5tools_str_append(buffer, info->dset_ptformat_pre,
|
|
indx ? "," OPTIONAL_LINE_BREAK " " : "", (unsigned long) indx);
|
|
|
|
for (loop_indx = 0; loop_indx < ndims; loop_indx++)
|
|
h5tools_str_append(buffer, "%s" HSIZE_T_FORMAT, loop_indx ? "," : "(",
|
|
ptdata[indx * ndims + loop_indx]);
|
|
|
|
h5tools_str_append(buffer, ")");
|
|
} /* end for (indx = 0; indx < npoints; indx++) */
|
|
|
|
dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter);
|
|
/* Render the region datatype info and indices element end */
|
|
|
|
ctx->need_prefix = TRUE;
|
|
|
|
if((dtype = H5Dget_type(region_id)) < 0)
|
|
HGOTO_ERROR(dimension_break, H5E_tools_min_id_g, "H5Dget_type failed");
|
|
|
|
if((type_id = H5Tget_native_type(dtype, H5T_DIR_DEFAULT)) < 0)
|
|
HGOTO_ERROR(dimension_break, H5E_tools_min_id_g, "H5Tget_native_type failed");
|
|
|
|
/* Render the datatype element begin */
|
|
h5tools_str_reset(buffer);
|
|
h5tools_str_append(buffer, "%s %s ",
|
|
h5tools_dump_header_format->datatypebegin,
|
|
h5tools_dump_header_format->datatypeblockbegin);
|
|
|
|
ctx->indent_level++;
|
|
h5tools_print_datatype(stream, buffer, info, ctx, dtype, TRUE);
|
|
ctx->indent_level--;
|
|
|
|
if (HDstrlen(h5tools_dump_header_format->datatypeblockend)) {
|
|
h5tools_str_append(buffer, "%s", h5tools_dump_header_format->datatypeblockend);
|
|
if (HDstrlen(h5tools_dump_header_format->datatypeend))
|
|
h5tools_str_append(buffer, " ");
|
|
}
|
|
if (HDstrlen(h5tools_dump_header_format->datatypeend))
|
|
h5tools_str_append(buffer, "%s", h5tools_dump_header_format->datatypeend);
|
|
|
|
dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter);
|
|
/* Render the datatype element end */
|
|
|
|
ctx->need_prefix = TRUE;
|
|
|
|
/* Render the dataspace element begin */
|
|
h5tools_str_reset(buffer);
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_str_append(buffer, "%s ", h5tools_dump_header_format->dataspacebegin);
|
|
|
|
h5tools_print_dataspace(stream, buffer, info, ctx, region_space);
|
|
|
|
if (HDstrlen(h5tools_dump_header_format->dataspaceblockend)) {
|
|
h5tools_str_append(buffer, "%s", h5tools_dump_header_format->dataspaceblockend);
|
|
if (HDstrlen(h5tools_dump_header_format->dataspaceend))
|
|
h5tools_str_append(buffer, " ");
|
|
}
|
|
if (HDstrlen(h5tools_dump_header_format->dataspaceend))
|
|
h5tools_str_append(buffer, "%s", h5tools_dump_header_format->dataspaceblockend);
|
|
|
|
dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter);
|
|
/* Render the dataspace element end */
|
|
|
|
ctx->need_prefix = TRUE;
|
|
|
|
/* Render the databegin element begin */
|
|
h5tools_str_reset(buffer);
|
|
|
|
h5tools_str_append(buffer, "%s %s ",
|
|
h5tools_dump_header_format->databegin,
|
|
h5tools_dump_header_format->datablockbegin);
|
|
|
|
dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos, ncols, region_elmt_counter, elmt_counter);
|
|
|
|
ctx->need_prefix = TRUE;
|
|
|
|
h5tools_print_region_data_points(region_space, region_id,
|
|
rawdatastream, info, ctx, buffer, ncols, ndims, type_id, npoints, ptdata);
|
|
|
|
done:
|
|
HDfree(ptdata);
|
|
|
|
if(H5Tclose(type_id) < 0)
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed");
|
|
|
|
if(H5Tclose(dtype) < 0)
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed");
|
|
|
|
ctx->need_prefix = TRUE;
|
|
|
|
/* Render the dataend element begin */
|
|
h5tools_str_reset(buffer);
|
|
h5tools_str_append(buffer, "%s %s ",
|
|
h5tools_dump_header_format->dataend,
|
|
h5tools_dump_header_format->datablockend);
|
|
dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos,
|
|
ncols, region_elmt_counter, elmt_counter);
|
|
/* Render the dataend element end*/
|
|
|
|
ctx->indent_level--;
|
|
ctx->need_prefix = TRUE;
|
|
|
|
/* Render the region } element begin */
|
|
h5tools_str_reset(buffer);
|
|
h5tools_str_append(buffer, "}");
|
|
dimension_break = h5tools_render_element(stream, info, ctx, buffer, curr_pos,
|
|
ncols, region_elmt_counter, elmt_counter);
|
|
/* Render the region } element end */
|
|
|
|
H5_LEAVE(dimension_break)
|
|
CATCH
|
|
return ret_value;
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Audience: Public
|
|
* Chapter: H5Tools Library
|
|
* Purpose: print out the data for a subset of a dataset.
|
|
* Description:
|
|
*
|
|
* Select a hyperslab from the dataset DSET using the parameters
|
|
* specified in SSET. Dump this out to STREAM.
|
|
*
|
|
* Hyperslabs select "count" blocks of size "block", spaced "stride" elements
|
|
* from each other, starting at coordinate "start".
|
|
*
|
|
* Return:
|
|
* On success, return SUCCEED. Otherwise, the function returns FAIL.
|
|
*
|
|
* Algorithm
|
|
*
|
|
* The parameters from SSET are translated into temporary
|
|
* variables so that 1 row is printed at a time (getting the coordinate indices
|
|
* at each row).
|
|
* We define the stride, count and block to be 1 in the row dimension to achieve
|
|
* this and advance until all points are printed.
|
|
*
|
|
* The element position is obtained from the matrix according to:
|
|
* Given an index I(z,y,x) its position from the beginning of an array
|
|
* of sizes A(size_z, size_y,size_x) is given by
|
|
* Position of I(z,y,x) = index_z * size_y * size_x
|
|
* + index_y * size_x
|
|
* + index_x
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static herr_t
|
|
h5tools_print_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx,
|
|
hid_t dset, hid_t p_type, struct subset_t *sset,
|
|
hid_t f_space, hsize_t hyperslab_count,
|
|
hsize_t *temp_start,/* start inside offset count loop */
|
|
hsize_t *temp_count,/* count inside offset count loop */
|
|
hsize_t *temp_block,/* block size used in loop */
|
|
hsize_t *temp_stride,/* stride size used in loop */
|
|
hsize_t *total_size,/* total size of dataset */
|
|
unsigned int row_dim/* index of row_counter dimension */)
|
|
{
|
|
HERR_INIT(herr_t, SUCCEED)
|
|
size_t i; /* counters */
|
|
size_t j; /* counters */
|
|
hsize_t zero[1] = {0}; /* vector of zeros */
|
|
unsigned int flags; /* buffer extent flags */
|
|
hsize_t elmtno; /* elemnt index */
|
|
hsize_t low[H5S_MAX_RANK]; /* low bound of hyperslab */
|
|
hsize_t high[H5S_MAX_RANK]; /* higher bound of hyperslab */
|
|
size_t p_type_nbytes; /* size of memory type */
|
|
hsize_t sm_size[H5S_MAX_RANK]; /* stripmine size */
|
|
hsize_t sm_nbytes; /* bytes per stripmine */
|
|
hssize_t ssm_nelmts; /* elements per stripmine*/
|
|
hsize_t sm_nelmts; /* elements per stripmine*/
|
|
unsigned char *sm_buf = NULL; /* buffer for raw data */
|
|
hid_t sm_space = -1; /* stripmine data space */
|
|
hsize_t size_row_block; /* size for blocks along rows */
|
|
hsize_t row_counter = 0;
|
|
|
|
/* VL data special information */
|
|
unsigned int vl_data = 0; /* contains VL datatypes */
|
|
|
|
if ((size_t) ctx->ndims > NELMTS(sm_size))
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "ndims and sm_size comparision failed");
|
|
|
|
if (ctx->ndims > 0)
|
|
init_acc_pos(ctx, total_size);
|
|
|
|
size_row_block = sset->block.data[row_dim];
|
|
|
|
/* Check if we have VL data in the dataset's datatype */
|
|
if (h5tools_detect_vlen(p_type) == TRUE)
|
|
vl_data = TRUE;
|
|
|
|
/* display loop */
|
|
for (; hyperslab_count > 0; temp_start[row_dim] += temp_stride[row_dim], hyperslab_count--) {
|
|
/* jump rows if size of block exceeded
|
|
cases where block > 1 only and stride > block */
|
|
if (size_row_block > 1
|
|
&& row_counter == size_row_block
|
|
&& sset->stride.data[row_dim] > sset->block.data[row_dim]) {
|
|
|
|
hsize_t increase_rows = sset->stride.data[row_dim] - sset->block.data[row_dim];
|
|
temp_start[row_dim] += increase_rows;
|
|
row_counter = 0;
|
|
}
|
|
|
|
row_counter++;
|
|
|
|
/* calculate the potential number of elements we're going to print */
|
|
if(H5Sselect_hyperslab(f_space, H5S_SELECT_SET, temp_start, temp_stride, temp_count, temp_block) < 0)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Sselect_hyperslab failed");
|
|
|
|
if((ssm_nelmts = H5Sget_select_npoints(f_space)) < 0)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Sget_select_npoints failed");
|
|
sm_nelmts = (hsize_t)ssm_nelmts;
|
|
|
|
if (sm_nelmts > 0) {
|
|
/*
|
|
* determine the strip mine size and allocate a buffer. the strip mine is
|
|
* a hyperslab whose size is manageable.
|
|
*/
|
|
if((sm_nbytes = p_type_nbytes = H5Tget_size(p_type)) == 0)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_size failed");
|
|
|
|
if (ctx->ndims > 0)
|
|
for (i = ctx->ndims; i > 0; --i) {
|
|
hsize_t size = H5TOOLS_BUFSIZE / sm_nbytes;
|
|
if (size == 0) /* datum size > H5TOOLS_BUFSIZE */
|
|
size = 1;
|
|
sm_size[i - 1] = MIN(total_size[i - 1], size);
|
|
sm_nbytes *= sm_size[i - 1];
|
|
HDassert(sm_nbytes > 0);
|
|
}
|
|
|
|
HDassert(sm_nbytes == (hsize_t) ((size_t) sm_nbytes)); /*check for overflow*/
|
|
if(NULL == (sm_buf = (unsigned char *)HDmalloc((size_t) sm_nelmts * p_type_nbytes)))
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for strip-mine");
|
|
|
|
if((sm_space = H5Screate_simple(1, &sm_nelmts, NULL)) < 0)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Screate_simple failed");
|
|
|
|
if(H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL, &sm_nelmts, NULL) < 0)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Sselect_hyperslab failed");
|
|
|
|
/* read the data */
|
|
if(H5Dread(dset, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf) < 0)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Dread failed");
|
|
|
|
/* print the data */
|
|
flags = START_OF_DATA;
|
|
|
|
if (hyperslab_count == 1)
|
|
flags |= END_OF_DATA;
|
|
|
|
for (i = 0; i < ctx->ndims; i++)
|
|
ctx->p_max_idx[i] = ctx->p_min_idx[i] + MIN(total_size[i], sm_size[i]);
|
|
|
|
/* print array indices. get the lower bound of the hyperslab and calulate
|
|
the element position at the start of hyperslab */
|
|
if(H5Sget_select_bounds(f_space, low, high) < 0)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Sget_select_bounds failed");
|
|
|
|
elmtno = 0;
|
|
for (i = 0; i < (size_t) ctx->ndims - 1; i++) {
|
|
hsize_t offset = 1; /* accumulation of the previous dimensions */
|
|
for (j = i + 1; j < (size_t) ctx->ndims; j++)
|
|
offset *= total_size[j];
|
|
elmtno += low[i] * offset;
|
|
}
|
|
elmtno += low[ctx->ndims - 1];
|
|
|
|
/* initialize the current stripmine position; this is necessary to print the array
|
|
indices */
|
|
ctx->sm_pos = elmtno;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
|
|
if(h5tools_dump_simple_data(stream, info, dset, ctx, flags, sm_nelmts, p_type, sm_buf) < 0)
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "h5tools_dump_simple_data failed");
|
|
|
|
/* Reclaim any VL memory, if necessary */
|
|
if (vl_data)
|
|
H5Dvlen_reclaim(p_type, sm_space, H5P_DEFAULT, sm_buf);
|
|
|
|
if(H5Sclose(sm_space) < 0)
|
|
H5E_THROW(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose failed");
|
|
if(sm_buf)
|
|
HDfree(sm_buf);
|
|
sm_buf = NULL;
|
|
}
|
|
else
|
|
H5E_THROW(SUCCEED, H5E_tools_min_id_g, "nothing to print");
|
|
|
|
ctx->continuation++;
|
|
|
|
} /* hyperslab_count loop */
|
|
|
|
CATCH
|
|
if(sm_buf)
|
|
HDfree(sm_buf);
|
|
|
|
return ret_value;
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Audience: Public
|
|
* Chapter: H5Tools Library
|
|
* Purpose: print out the data for a subset of a dataset.
|
|
* Description:
|
|
*
|
|
* Select a hyperslab from the dataset DSET using the parameters
|
|
* specified in SSET. Dump this out to STREAM.
|
|
*
|
|
* Hyperslabs select "count" blocks of size "block", spaced "stride" elements
|
|
* from each other, starting at coordinate "start".
|
|
*
|
|
* Return:
|
|
* On success, return SUCCEED. Otherwise, the function returns FAIL.
|
|
*
|
|
* Algorithm
|
|
*
|
|
* The parameters from SSET are translated into temporary
|
|
* variables so that 1 row is printed at a time (getting the coordinate indices
|
|
* at each row).
|
|
* We define the stride, count and block to be 1 in the row dimension to achieve
|
|
* this and advance until all points are printed.
|
|
*
|
|
* The element position is obtained from the matrix according to:
|
|
* Given an index I(z,y,x) its position from the beginning of an array
|
|
* of sizes A(size_z, size_y,size_x) is given by
|
|
* Position of I(z,y,x) = index_z * size_y * size_x
|
|
* + index_y * size_x
|
|
* + index_x
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static herr_t
|
|
h5tools_display_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx,
|
|
hid_t dset, hid_t p_type, struct subset_t *sset,
|
|
hid_t f_space, hsize_t *total_size)
|
|
{
|
|
size_t i; /* counters */
|
|
hsize_t n; /* counters */
|
|
hsize_t count; /* hyperslab count */
|
|
hsize_t outer_count; /* offset count */
|
|
unsigned int row_dim; /* index of row_counter dimension */
|
|
int current_outer_dim; /* dimension for start */
|
|
hsize_t temp_start[H5S_MAX_RANK];/* temporary start inside offset count loop */
|
|
hsize_t max_start[H5S_MAX_RANK]; /* maximum start inside offset count loop */
|
|
hsize_t temp_count[H5S_MAX_RANK];/* temporary count inside offset count loop */
|
|
hsize_t temp_block[H5S_MAX_RANK];/* temporary block size used in loop */
|
|
hsize_t temp_stride[H5S_MAX_RANK];/* temporary stride size used in loop */
|
|
int reset_dim;
|
|
herr_t ret_value = SUCCEED;
|
|
|
|
if (ctx->ndims == 1)
|
|
row_dim = 0;
|
|
else
|
|
row_dim = ctx->ndims - 2;
|
|
|
|
/* get the offset count */
|
|
outer_count = 1;
|
|
if (ctx->ndims > 2)
|
|
for (i = 0; i < (size_t) ctx->ndims - 2; i++) {
|
|
/* block size is handled by containing h5tools_print_simple_subset call */
|
|
outer_count = outer_count * sset->count.data[i];
|
|
}
|
|
|
|
/* initialize temporary start, count and maximum start */
|
|
for (i = 0; i < (size_t) ctx->ndims; i++) {
|
|
temp_start[i] = sset->start.data[i];
|
|
temp_count[i] = sset->count.data[i];
|
|
temp_block[i] = sset->block.data[i];
|
|
temp_stride[i] = sset->stride.data[i];
|
|
max_start[i] = 0;
|
|
}
|
|
|
|
if (ctx->ndims > 2) {
|
|
for (i = 0; i < (size_t) ctx->ndims - 2; i++) {
|
|
max_start[i] = temp_start[i] + sset->count.data[i];
|
|
temp_count[i] = 1;
|
|
}
|
|
}
|
|
|
|
/* offset loop */
|
|
for (n = 0; n < outer_count; n++) {
|
|
/* number of read iterations in inner loop, read by rows, to match 2D display */
|
|
if (ctx->ndims > 1) {
|
|
/* count is the number of iterations to display all the rows,
|
|
the block size count times */
|
|
count = sset->count.data[row_dim] * sset->block.data[row_dim];
|
|
|
|
/* always 1 row_counter at a time, that is a block of size 1, 1 time */
|
|
temp_count[row_dim] = 1;
|
|
temp_block[row_dim] = 1;
|
|
|
|
/* advance 1 row_counter at a time */
|
|
if (sset->block.data[row_dim] > 1)
|
|
temp_stride[row_dim] = 1;
|
|
}
|
|
/* for the 1D case */
|
|
else {
|
|
count = 1;
|
|
}
|
|
|
|
h5tools_print_simple_subset(stream, info, ctx, dset, p_type, sset,
|
|
f_space, count, temp_start, temp_count,
|
|
temp_block, temp_stride, total_size, row_dim);
|
|
|
|
if (ctx->ndims > 2) {
|
|
/* dimension for start */
|
|
current_outer_dim = (ctx->ndims - 2) - 1;
|
|
|
|
/* set start to original from current_outer_dim up */
|
|
for (i = current_outer_dim + 1; i < ctx->ndims; i++) {
|
|
temp_start[i] = sset->start.data[i];
|
|
}
|
|
|
|
/* increment start dimension */
|
|
do {
|
|
reset_dim = 0;
|
|
temp_start[current_outer_dim]++;
|
|
if (temp_start[current_outer_dim] >= max_start[current_outer_dim]) {
|
|
temp_start[current_outer_dim] = sset->start.data[current_outer_dim];
|
|
|
|
/* consider block */
|
|
if (sset->block.data[current_outer_dim] > 1)
|
|
temp_start[current_outer_dim]++;
|
|
|
|
current_outer_dim--;
|
|
reset_dim = 1;
|
|
}
|
|
} while (current_outer_dim >= 0 && reset_dim);
|
|
|
|
} /* ctx.ndims > 1 */
|
|
|
|
} /* outer_count */
|
|
|
|
return ret_value;
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Audience: Public
|
|
* Chapter: H5Tools Library
|
|
* Purpose: Dump out a subset of a dataset.
|
|
* Description:
|
|
*
|
|
* Select a hyperslab from the dataset DSET using the parameters
|
|
* specified in SSET. Dump this out to STREAM.
|
|
*
|
|
* Hyperslabs select "count" blocks of size "block", spaced "stride" elements
|
|
* from each other, starting at coordinate "start".
|
|
*
|
|
* Return:
|
|
* On success, return SUCCEED. Otherwise, the function returns FAIL.
|
|
*
|
|
* Original programmer:
|
|
* Bill Wendling, Wednesday, March 07, 2001
|
|
*
|
|
* Rewritten with modified algorithm by:
|
|
* Pedro Vicente, Wednesday, January 16, 2008, contributions from Quincey Koziol
|
|
*
|
|
* Algorithm
|
|
*
|
|
* In a inner loop, the parameters from SSET are translated into temporary
|
|
* variables so that 1 row is printed at a time (getting the coordinate indices
|
|
* at each row).
|
|
* We define the stride, count and block to be 1 in the row dimension to achieve
|
|
* this and advance until all points are printed.
|
|
* An outer loop for cases where dimensionality is greater than 2D is made.
|
|
* In each iteration, the 2D block is displayed in the inner loop. The remaining
|
|
* slower dimensions above the first 2 are incremented one at a time in the outer loop
|
|
*
|
|
* The element position is obtained from the matrix according to:
|
|
* Given an index I(z,y,x) its position from the beginning of an array
|
|
* of sizes A(size_z, size_y,size_x) is given by
|
|
* Position of I(z,y,x) = index_z * size_y * size_x
|
|
* + index_y * size_x
|
|
* + index_x
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static herr_t
|
|
h5tools_dump_simple_subset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t dset,
|
|
hid_t p_type, struct subset_t *sset)
|
|
{
|
|
HERR_INIT(herr_t, SUCCEED)
|
|
int sndims;
|
|
hid_t f_space = -1; /* file data space */
|
|
size_t i; /* counters */
|
|
hsize_t total_size[H5S_MAX_RANK];/* total size of dataset*/
|
|
|
|
if((f_space = H5Dget_space(dset)) < 0)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Dget_space failed");
|
|
|
|
if((sndims = H5Sget_simple_extent_ndims(f_space)) < 0)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_ndims failed");
|
|
ctx->ndims = (unsigned)sndims;
|
|
|
|
/* assume entire data space to be printed */
|
|
if (ctx->ndims > 0)
|
|
for (i = 0; i < (size_t) ctx->ndims; i++)
|
|
ctx->p_min_idx[i] = 0;
|
|
|
|
if(H5Sget_simple_extent_dims(f_space, total_size, NULL) < 0)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed");
|
|
ctx->size_last_dim = total_size[ctx->ndims - 1];
|
|
|
|
h5tools_display_simple_subset(stream, info, ctx, dset, p_type, sset, f_space, total_size);
|
|
|
|
CATCH
|
|
if(f_space >= 0 && H5Sclose(f_space) < 0)
|
|
H5E_THROW(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose failed");
|
|
|
|
return ret_value;
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Audience: Public
|
|
* Chapter: H5Tools Library
|
|
* Purpose: Print some values from a dataset with a simple data space.
|
|
* Description:
|
|
* This is a special case of h5tools_dump_dset(). This function only
|
|
* intended for dumping datasets -- it does strip mining and some other
|
|
* things which are unnecessary for smaller objects such as attributes
|
|
* (to print small objects like attributes simply read the attribute and
|
|
* call h5tools_dump_simple_mem()).
|
|
* Return:
|
|
* On success, the function returns SUCCEED. Otherwise, the function
|
|
* returns FAIL.
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static int
|
|
h5tools_dump_simple_dset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx,
|
|
hid_t dset, hid_t p_type)
|
|
{
|
|
HERR_INIT(herr_t, SUCCEED)
|
|
hid_t f_space = -1; /* file data space */
|
|
hsize_t elmtno; /* counter */
|
|
size_t i; /* counter */
|
|
int carry; /* counter carry value */
|
|
hsize_t zero[8]; /* vector of zeros */
|
|
unsigned int flags; /* buffer extent flags */
|
|
hsize_t total_size[H5S_MAX_RANK]; /* total size of dataset*/
|
|
|
|
/* Print info */
|
|
size_t p_type_nbytes; /* size of memory type */
|
|
hsize_t p_nelmts; /* total selected elmts */
|
|
|
|
/* Stripmine info */
|
|
hsize_t sm_size[H5S_MAX_RANK]; /* stripmine size */
|
|
hsize_t sm_nbytes; /* bytes per stripmine */
|
|
hsize_t sm_nelmts; /* elements per stripmine*/
|
|
unsigned char *sm_buf = NULL; /* buffer for raw data */
|
|
hid_t sm_space = -1; /* stripmine data space */
|
|
|
|
/* Hyperslab info */
|
|
hsize_t hs_offset[H5S_MAX_RANK]; /* starting offset */
|
|
hsize_t hs_size[H5S_MAX_RANK]; /* size this pass */
|
|
hsize_t hs_nelmts; /* elements in request */
|
|
|
|
/* VL data special information */
|
|
unsigned int vl_data = 0; /* contains VL datatypes */
|
|
|
|
f_space = H5Dget_space(dset);
|
|
|
|
if (f_space == FAIL)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Dget_space failed");
|
|
|
|
ctx->ndims = H5Sget_simple_extent_ndims(f_space);
|
|
|
|
if ((size_t)ctx->ndims > NELMTS(sm_size)) {
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "ctx->ndims > NELMTS(sm_size) failed");
|
|
}
|
|
|
|
/* Assume entire data space to be printed */
|
|
if (ctx->ndims > 0)
|
|
for (i = 0; i < (size_t)ctx->ndims; i++)
|
|
ctx->p_min_idx[i] = 0;
|
|
|
|
H5Sget_simple_extent_dims(f_space, total_size, NULL);
|
|
|
|
/* calculate the number of elements we're going to print */
|
|
p_nelmts = 1;
|
|
|
|
if (ctx->ndims > 0) {
|
|
for (i = 0; i < ctx->ndims; i++)
|
|
p_nelmts *= total_size[i];
|
|
ctx->size_last_dim = (total_size[ctx->ndims - 1]);
|
|
} /* end if */
|
|
else
|
|
ctx->size_last_dim = 0;
|
|
|
|
if (p_nelmts == 0) {
|
|
H5_LEAVE(SUCCEED); /* nothing to print */
|
|
}
|
|
|
|
/* Check if we have VL data in the dataset's datatype */
|
|
if (h5tools_detect_vlen(p_type) == TRUE)
|
|
vl_data = TRUE;
|
|
|
|
/*
|
|
* Determine the strip mine size and allocate a buffer. The strip mine is
|
|
* a hyperslab whose size is manageable.
|
|
*/
|
|
sm_nbytes = p_type_nbytes = H5Tget_size(p_type);
|
|
|
|
if (ctx->ndims > 0) {
|
|
for (i = ctx->ndims; i > 0; --i) {
|
|
hsize_t size = H5TOOLS_BUFSIZE / sm_nbytes;
|
|
if ( size == 0) /* datum size > H5TOOLS_BUFSIZE */
|
|
size = 1;
|
|
sm_size[i - 1] = MIN(total_size[i - 1], size);
|
|
sm_nbytes *= sm_size[i - 1];
|
|
HDassert(sm_nbytes > 0);
|
|
}
|
|
}
|
|
|
|
if(!sm_nbytes)
|
|
goto done;
|
|
|
|
HDassert(sm_nbytes == (hsize_t)((size_t)sm_nbytes)); /*check for overflow*/
|
|
sm_buf = (unsigned char *)HDmalloc((size_t)sm_nbytes);
|
|
|
|
sm_nelmts = sm_nbytes / p_type_nbytes;
|
|
sm_space = H5Screate_simple(1, &sm_nelmts, NULL);
|
|
|
|
if (ctx->ndims > 0)
|
|
init_acc_pos(ctx, total_size);
|
|
|
|
/* The stripmine loop */
|
|
HDmemset(hs_offset, 0, sizeof hs_offset);
|
|
HDmemset(zero, 0, sizeof zero);
|
|
|
|
for (elmtno = 0; elmtno < p_nelmts; elmtno += hs_nelmts) {
|
|
/* Calculate the hyperslab size */
|
|
if (ctx->ndims > 0) {
|
|
for (i = 0, hs_nelmts = 1; i < ctx->ndims; i++) {
|
|
hs_size[i] = MIN(total_size[i] - hs_offset[i], sm_size[i]);
|
|
ctx->p_max_idx[i] = ctx->p_min_idx[i] + hs_size[i];
|
|
hs_nelmts *= hs_size[i];
|
|
}
|
|
|
|
H5Sselect_hyperslab(f_space, H5S_SELECT_SET, hs_offset, NULL, hs_size, NULL);
|
|
H5Sselect_hyperslab(sm_space, H5S_SELECT_SET, zero, NULL, &hs_nelmts, NULL);
|
|
}
|
|
else {
|
|
H5Sselect_all(f_space);
|
|
H5Sselect_all(sm_space);
|
|
hs_nelmts = 1;
|
|
}
|
|
|
|
/* Read the data */
|
|
if (H5Dread(dset, p_type, sm_space, f_space, H5P_DEFAULT, sm_buf) < 0) {
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Dread failed");
|
|
}
|
|
|
|
/* Print the data */
|
|
flags = (elmtno == 0) ? START_OF_DATA : 0;
|
|
flags |= ((elmtno + hs_nelmts) >= p_nelmts) ? END_OF_DATA : 0;
|
|
|
|
/* initialize the current stripmine position; this is necessary to print the array
|
|
indices */
|
|
ctx->sm_pos = elmtno;
|
|
|
|
if(h5tools_dump_simple_data(stream, info, dset, ctx, flags, hs_nelmts, p_type, sm_buf) < 0)
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "h5tools_dump_simple_data failed");
|
|
|
|
/* Reclaim any VL memory, if necessary */
|
|
if (vl_data)
|
|
H5Dvlen_reclaim(p_type, sm_space, H5P_DEFAULT, sm_buf);
|
|
|
|
/* Calculate the next hyperslab offset */
|
|
for (i = ctx->ndims, carry = 1; i > 0 && carry; --i) {
|
|
ctx->p_min_idx[i - 1] = ctx->p_max_idx[i - 1];
|
|
hs_offset[i - 1] += hs_size[i - 1];
|
|
|
|
if (hs_offset[i - 1] == total_size[i - 1])
|
|
hs_offset[i - 1] = 0;
|
|
else
|
|
carry = 0;
|
|
}
|
|
|
|
ctx->continuation++;
|
|
}
|
|
|
|
CATCH
|
|
if(sm_buf)
|
|
HDfree(sm_buf);
|
|
|
|
done:
|
|
if(sm_space >= 0 && H5Sclose(sm_space) < 0)
|
|
H5E_THROW(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose failed");
|
|
if(f_space >= 0 && H5Sclose(f_space) < 0)
|
|
H5E_THROW(H5E_tools_g, H5E_tools_min_id_g, "H5Sclose failed");
|
|
|
|
return ret_value;
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: h5tools_dump_simple_mem
|
|
*
|
|
* Purpose: Print some values from memory with a simple data space.
|
|
* This is a special case of h5tools_dump_mem().
|
|
*
|
|
* Return: Success: SUCCEED
|
|
* Failure: FAIL
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
static int
|
|
h5tools_dump_simple_mem(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx, hid_t obj_id,
|
|
hid_t type, hid_t space, void *mem)
|
|
{
|
|
HERR_INIT(herr_t, SUCCEED)
|
|
unsigned i; /*counters */
|
|
hsize_t nelmts; /*total selected elmts */
|
|
|
|
ctx->ndims = H5Sget_simple_extent_ndims(space);
|
|
|
|
if ((size_t) ctx->ndims > NELMTS(ctx->p_min_idx))
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "ctx->ndims > NELMTS(ctx->p_min_idx) failed");
|
|
|
|
/* Assume entire data space to be printed */
|
|
for (i = 0; i < ctx->ndims; i++)
|
|
ctx->p_min_idx[i] = 0;
|
|
|
|
H5Sget_simple_extent_dims(space, ctx->p_max_idx, NULL);
|
|
|
|
for (i = 0, nelmts = 1; ctx->ndims != 0 && i < ctx->ndims; i++)
|
|
nelmts *= ctx->p_max_idx[i] - ctx->p_min_idx[i];
|
|
|
|
if (nelmts == 0)
|
|
H5_LEAVE(SUCCEED); /* nothing to print */
|
|
if (ctx->ndims > 0) {
|
|
HDassert(ctx->p_max_idx[ctx->ndims - 1] == (hsize_t) ((int) ctx->p_max_idx[ctx->ndims - 1]));
|
|
ctx->size_last_dim = (int) (ctx->p_max_idx[ctx->ndims - 1]);
|
|
} /* end if */
|
|
else
|
|
ctx->size_last_dim = 0;
|
|
|
|
if (ctx->ndims > 0)
|
|
init_acc_pos(ctx, ctx->p_max_idx);
|
|
|
|
if(h5tools_dump_simple_data(stream, info, obj_id, ctx, START_OF_DATA | END_OF_DATA, nelmts, type, mem) < 0)
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "h5tools_dump_simple_data failed");
|
|
|
|
CATCH
|
|
return ret_value;
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: h5tools_dump_dset
|
|
*
|
|
* Purpose: Print some values from a dataset DSET to the file STREAM
|
|
* after converting all types to P_TYPE (which should be a
|
|
* native type). If P_TYPE is a negative value then it will be
|
|
* computed from the dataset type using only native types.
|
|
*
|
|
* Note: This function is intended only for datasets since it does
|
|
* some things like strip mining which are unnecessary for
|
|
* smaller objects such as attributes. The easiest way to print
|
|
* small objects is to read the object into memory and call
|
|
* h5tools_dump_mem().
|
|
*
|
|
* Return: Success: SUCCEED
|
|
* Failure: FAIL
|
|
*
|
|
* Modifications:
|
|
* Robb Matzke, 1999-06-07
|
|
* If info->raw is set then the memory datatype will be the same
|
|
* as the file datatype.
|
|
*
|
|
* Bill Wendling, 2001-02-27
|
|
* Renamed to ``h5tools_dump_dset'' and added the subsetting
|
|
* parameter.
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
int
|
|
h5tools_dump_dset(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx,
|
|
hid_t dset, hid_t _p_type, struct subset_t *sset)
|
|
{
|
|
hid_t f_space;
|
|
hid_t p_type = _p_type;
|
|
hid_t f_type;
|
|
H5S_class_t space_type;
|
|
int status = FAIL;
|
|
h5tool_format_t info_dflt;
|
|
/* Use default values */
|
|
if (!stream)
|
|
stream = rawoutstream;
|
|
|
|
if (!info) {
|
|
HDmemset(&info_dflt, 0, sizeof info_dflt);
|
|
info = &info_dflt;
|
|
}
|
|
|
|
if (p_type < 0) {
|
|
f_type = H5Dget_type(dset);
|
|
|
|
if (info->raw || bin_form == 1)
|
|
p_type = H5Tcopy(f_type);
|
|
else if (bin_form == 2)
|
|
p_type = h5tools_get_little_endian_type(f_type);
|
|
else if (bin_form == 3)
|
|
p_type = h5tools_get_big_endian_type(f_type);
|
|
else
|
|
p_type = h5tools_get_native_type(f_type);
|
|
|
|
H5Tclose(f_type);
|
|
|
|
if (p_type < 0)
|
|
goto done;
|
|
}
|
|
|
|
/* Check the data space */
|
|
f_space = H5Dget_space(dset);
|
|
|
|
space_type = H5Sget_simple_extent_type(f_space);
|
|
|
|
/* Print the data */
|
|
if (space_type == H5S_SIMPLE || space_type == H5S_SCALAR) {
|
|
if(!sset)
|
|
status = h5tools_dump_simple_dset(rawdatastream, info, ctx, dset, p_type);
|
|
else
|
|
status = h5tools_dump_simple_subset(stream, info, ctx, dset, p_type, sset);
|
|
}
|
|
else
|
|
/* space is H5S_NULL */
|
|
status = SUCCEED;
|
|
|
|
/* Close the dataspace */
|
|
H5Sclose(f_space);
|
|
|
|
done:
|
|
if (p_type != _p_type)
|
|
H5Tclose(p_type);
|
|
|
|
return status;
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: h5tools_dump_mem
|
|
*
|
|
* Purpose: Displays the data contained in MEM. MEM must have the
|
|
* specified data TYPE and SPACE. Currently only simple data
|
|
* spaces are allowed and only the `all' selection.
|
|
*
|
|
* Return: Success: SUCCEED
|
|
* Failure: FAIL
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
int
|
|
h5tools_dump_mem(FILE *stream, const h5tool_format_t *info, h5tools_context_t *ctx,
|
|
hid_t obj_id, hid_t type, hid_t space, void *mem)
|
|
{
|
|
HERR_INIT(int, SUCCEED)
|
|
h5tool_format_t info_dflt;
|
|
|
|
/* Use default values */
|
|
if (!stream)
|
|
stream = rawoutstream;
|
|
|
|
if (!info) {
|
|
HDmemset(&info_dflt, 0, sizeof(info_dflt));
|
|
info = &info_dflt;
|
|
}
|
|
|
|
/* Check the data space */
|
|
if (H5Sis_simple(space) <= 0)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Sis_simple failed")
|
|
|
|
H5_LEAVE(h5tools_dump_simple_mem(stream, info, ctx, obj_id, type, space, mem))
|
|
|
|
CATCH
|
|
return ret_value;
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: print_datatype
|
|
*
|
|
* Purpose: print the datatype - do not prefix.
|
|
*
|
|
* Return: void
|
|
*
|
|
* In/Out: h5tools_str_t *buffer
|
|
* h5tools_context_t *ctx
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
int
|
|
h5tools_print_datatype(FILE *stream, h5tools_str_t *buffer, const h5tool_format_t *info,
|
|
h5tools_context_t *ctx, hid_t type, int object_search)
|
|
{
|
|
HERR_INIT(int, SUCCEED)
|
|
char *mname;
|
|
hid_t mtype = -1;
|
|
hid_t str_type = -1;
|
|
hid_t super = -1;
|
|
hid_t tmp_type = -1;
|
|
int snmembers;
|
|
int sndims;
|
|
unsigned nmembers;
|
|
unsigned i;
|
|
size_t size = 0;
|
|
size_t ncols = 80; /*available output width */
|
|
hsize_t dims[H5TOOLS_DUMP_MAX_RANK];
|
|
hsize_t curr_pos = 0; /* total data element position */
|
|
H5T_str_t str_pad;
|
|
H5T_cset_t cset;
|
|
H5T_order_t order;
|
|
H5T_class_t type_class;
|
|
H5T_sign_t sign; /* sign scheme value */
|
|
htri_t is_vlstr = FALSE;
|
|
const char *sign_s = NULL; /* sign scheme string */
|
|
const char *order_s = NULL; /* byte order string */
|
|
|
|
if((type_class = H5Tget_class(type)) < 0)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_class failed");
|
|
if (object_search && H5Tcommitted(type) > 0) {
|
|
H5O_info_t oinfo;
|
|
obj_t *obj = NULL; /* Found object */
|
|
|
|
H5Oget_info(type, &oinfo);
|
|
obj = search_obj(h5dump_type_table, oinfo.addr);
|
|
|
|
if(obj) {
|
|
if(!obj->recorded) {
|
|
h5tools_str_append(buffer,"\"/#"H5_PRINTF_HADDR_FMT"\"", obj->objno);
|
|
}
|
|
else
|
|
h5tools_str_append(buffer, "\"%s\"", obj->objname);
|
|
}
|
|
else {
|
|
error_msg("unknown committed type.\n");
|
|
h5tools_setstatus(EXIT_FAILURE);
|
|
}
|
|
|
|
return ret_value;
|
|
}
|
|
|
|
if (info->line_ncols > 0)
|
|
ncols = info->line_ncols;
|
|
|
|
switch (type_class) {
|
|
case H5T_INTEGER:
|
|
if (H5Tequal(type, H5T_STD_I8BE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_STD_I8BE");
|
|
}
|
|
else if (H5Tequal(type, H5T_STD_I8LE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_STD_I8LE");
|
|
}
|
|
else if (H5Tequal(type, H5T_STD_I16BE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_STD_I16BE");
|
|
}
|
|
else if (H5Tequal(type, H5T_STD_I16LE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_STD_I16LE");
|
|
}
|
|
else if (H5Tequal(type, H5T_STD_I32BE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_STD_I32BE");
|
|
}
|
|
else if (H5Tequal(type, H5T_STD_I32LE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_STD_I32LE");
|
|
}
|
|
else if (H5Tequal(type, H5T_STD_I64BE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_STD_I64BE");
|
|
}
|
|
else if (H5Tequal(type, H5T_STD_I64LE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_STD_I64LE");
|
|
}
|
|
else if (H5Tequal(type, H5T_STD_U8BE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_STD_U8BE");
|
|
}
|
|
else if (H5Tequal(type, H5T_STD_U8LE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_STD_U8LE");
|
|
}
|
|
else if (H5Tequal(type, H5T_STD_U16BE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_STD_U16BE");
|
|
}
|
|
else if (H5Tequal(type, H5T_STD_U16LE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_STD_U16LE");
|
|
}
|
|
else if (H5Tequal(type, H5T_STD_U32BE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_STD_U32BE");
|
|
}
|
|
else if (H5Tequal(type, H5T_STD_U32LE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_STD_U32LE");
|
|
}
|
|
else if (H5Tequal(type, H5T_STD_U64BE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_STD_U64BE");
|
|
}
|
|
else if (H5Tequal(type, H5T_STD_U64LE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_STD_U64LE");
|
|
}
|
|
else if (H5Tequal(type, H5T_NATIVE_SCHAR) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_NATIVE_SCHAR");
|
|
}
|
|
else if (H5Tequal(type, H5T_NATIVE_UCHAR) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_NATIVE_UCHAR");
|
|
}
|
|
else if (H5Tequal(type, H5T_NATIVE_SHORT) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_NATIVE_SHORT");
|
|
}
|
|
else if (H5Tequal(type, H5T_NATIVE_USHORT) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_NATIVE_USHORT");
|
|
}
|
|
else if (H5Tequal(type, H5T_NATIVE_INT) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_NATIVE_INT");
|
|
}
|
|
else if (H5Tequal(type, H5T_NATIVE_UINT) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_NATIVE_UINT");
|
|
}
|
|
else if (H5Tequal(type, H5T_NATIVE_LONG) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_NATIVE_LONG");
|
|
}
|
|
else if (H5Tequal(type, H5T_NATIVE_ULONG) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_NATIVE_ULONG");
|
|
}
|
|
else if (H5Tequal(type, H5T_NATIVE_LLONG) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_NATIVE_LLONG");
|
|
}
|
|
else if (H5Tequal(type, H5T_NATIVE_ULLONG) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_NATIVE_ULLONG");
|
|
}
|
|
else {
|
|
|
|
/* byte order */
|
|
if (H5Tget_size(type) > 1) {
|
|
order = H5Tget_order(type);
|
|
if (H5T_ORDER_LE == order) {
|
|
order_s = " little-endian";
|
|
}
|
|
else if (H5T_ORDER_BE == order) {
|
|
order_s = " big-endian";
|
|
}
|
|
else if (H5T_ORDER_VAX == order) {
|
|
order_s = " mixed-endian";
|
|
}
|
|
else {
|
|
order_s = " unknown-byte-order";
|
|
}
|
|
}
|
|
else {
|
|
order_s = "";
|
|
}
|
|
|
|
/* sign */
|
|
if ((sign = H5Tget_sign(type)) >= 0) {
|
|
if (H5T_SGN_NONE == sign) {
|
|
sign_s = " unsigned";
|
|
}
|
|
else if (H5T_SGN_2 == sign) {
|
|
sign_s = "";
|
|
}
|
|
else {
|
|
sign_s = " unknown-sign";
|
|
}
|
|
}
|
|
else {
|
|
sign_s = " unknown-sign";
|
|
}
|
|
|
|
/* print size, order, and sign */
|
|
h5tools_str_append(buffer, "%lu-bit%s%s integer",
|
|
(unsigned long) (8 * H5Tget_size(type)), order_s, sign_s);
|
|
}
|
|
break;
|
|
|
|
case H5T_FLOAT:
|
|
if (H5Tequal(type, H5T_IEEE_F32BE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_IEEE_F32BE");
|
|
}
|
|
else if (H5Tequal(type, H5T_IEEE_F32LE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_IEEE_F32LE");
|
|
}
|
|
else if (H5Tequal(type, H5T_IEEE_F64BE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_IEEE_F64BE");
|
|
}
|
|
else if (H5Tequal(type, H5T_IEEE_F64LE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_IEEE_F64LE");
|
|
}
|
|
else if (H5Tequal(type, H5T_VAX_F32) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_VAX_F32");
|
|
}
|
|
else if (H5Tequal(type, H5T_VAX_F64) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_VAX_F64");
|
|
}
|
|
else if (H5Tequal(type, H5T_NATIVE_FLOAT) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_NATIVE_FLOAT");
|
|
}
|
|
else if (H5Tequal(type, H5T_NATIVE_DOUBLE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_NATIVE_DOUBLE");
|
|
#if H5_SIZEOF_LONG_DOUBLE !=0
|
|
}
|
|
else if (H5Tequal(type, H5T_NATIVE_LDOUBLE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_NATIVE_LDOUBLE");
|
|
#endif
|
|
}
|
|
else {
|
|
|
|
/* byte order */
|
|
if (H5Tget_size(type) > 1) {
|
|
order = H5Tget_order(type);
|
|
if (H5T_ORDER_LE == order) {
|
|
order_s = " little-endian";
|
|
}
|
|
else if (H5T_ORDER_BE == order) {
|
|
order_s = " big-endian";
|
|
}
|
|
else if (H5T_ORDER_VAX == order) {
|
|
order_s = " mixed-endian";
|
|
}
|
|
else {
|
|
order_s = " unknown-byte-order";
|
|
}
|
|
}
|
|
else {
|
|
order_s = "";
|
|
}
|
|
|
|
/* print size and byte order */
|
|
h5tools_str_append(buffer, "%lu-bit%s floating-point",
|
|
(unsigned long) (8 * H5Tget_size(type)), order_s);
|
|
|
|
}
|
|
break;
|
|
|
|
case H5T_TIME:
|
|
h5tools_str_append(buffer, "H5T_TIME: not yet implemented");
|
|
break;
|
|
|
|
case H5T_STRING:
|
|
/* Make a copy of type in memory in case when TYPE is on disk, the size
|
|
* will be bigger than in memory. This makes it easier to compare
|
|
* types in memory. */
|
|
tmp_type = H5Tcopy(type);
|
|
size = H5Tget_size(tmp_type);
|
|
str_pad = H5Tget_strpad(tmp_type);
|
|
cset = H5Tget_cset(tmp_type);
|
|
is_vlstr = H5Tis_variable_str(tmp_type);
|
|
|
|
curr_pos = ctx->cur_column;
|
|
h5tools_str_append(buffer, "H5T_STRING %s", h5tools_dump_header_format->strblockbegin);
|
|
h5tools_render_element(stream, info, ctx, buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->indent_level++;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, 0, 0);
|
|
|
|
h5tools_str_reset(buffer);
|
|
|
|
if (is_vlstr)
|
|
h5tools_str_append(buffer, "%s H5T_VARIABLE;", STRSIZE);
|
|
else
|
|
h5tools_str_append(buffer, "%s %d;", STRSIZE, (int) size);
|
|
h5tools_render_element(stream, info, ctx, buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, 0, 0);
|
|
|
|
h5tools_str_reset(buffer);
|
|
|
|
h5tools_str_append(buffer, "%s ", STRPAD);
|
|
switch (str_pad) {
|
|
case H5T_STR_NULLTERM:
|
|
h5tools_str_append(buffer, "H5T_STR_NULLTERM;");
|
|
break;
|
|
case H5T_STR_NULLPAD:
|
|
h5tools_str_append(buffer, "H5T_STR_NULLPAD;");
|
|
break;
|
|
case H5T_STR_SPACEPAD:
|
|
h5tools_str_append(buffer, "H5T_STR_SPACEPAD;");
|
|
break;
|
|
case H5T_STR_RESERVED_3:
|
|
case H5T_STR_RESERVED_4:
|
|
case H5T_STR_RESERVED_5:
|
|
case H5T_STR_RESERVED_6:
|
|
case H5T_STR_RESERVED_7:
|
|
case H5T_STR_RESERVED_8:
|
|
case H5T_STR_RESERVED_9:
|
|
case H5T_STR_RESERVED_10:
|
|
case H5T_STR_RESERVED_11:
|
|
case H5T_STR_RESERVED_12:
|
|
case H5T_STR_RESERVED_13:
|
|
case H5T_STR_RESERVED_14:
|
|
case H5T_STR_RESERVED_15:
|
|
h5tools_str_append(buffer, "H5T_STR_UNKNOWN;");
|
|
break;
|
|
case H5T_STR_ERROR:
|
|
h5tools_str_append(buffer, "H5T_STR_ERROR;");
|
|
break;
|
|
default:
|
|
h5tools_str_append(buffer, "ERROR;");
|
|
break;
|
|
}
|
|
h5tools_render_element(stream, info, ctx, buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, 0, 0);
|
|
|
|
h5tools_str_reset(buffer);
|
|
|
|
h5tools_str_append(buffer, "%s ", CSET);
|
|
|
|
switch (cset) {
|
|
case H5T_CSET_ASCII:
|
|
h5tools_str_append(buffer, "H5T_CSET_ASCII;");
|
|
break;
|
|
case H5T_CSET_UTF8:
|
|
h5tools_str_append(buffer, "H5T_CSET_UTF8;");
|
|
break;
|
|
case H5T_CSET_RESERVED_2:
|
|
case H5T_CSET_RESERVED_3:
|
|
case H5T_CSET_RESERVED_4:
|
|
case H5T_CSET_RESERVED_5:
|
|
case H5T_CSET_RESERVED_6:
|
|
case H5T_CSET_RESERVED_7:
|
|
case H5T_CSET_RESERVED_8:
|
|
case H5T_CSET_RESERVED_9:
|
|
case H5T_CSET_RESERVED_10:
|
|
case H5T_CSET_RESERVED_11:
|
|
case H5T_CSET_RESERVED_12:
|
|
case H5T_CSET_RESERVED_13:
|
|
case H5T_CSET_RESERVED_14:
|
|
case H5T_CSET_RESERVED_15:
|
|
h5tools_str_append(buffer, "H5T_CSET_UNKNOWN;");
|
|
case H5T_CSET_ERROR:
|
|
h5tools_str_append(buffer, "H5T_CSET_ERROR;");
|
|
break;
|
|
default:
|
|
h5tools_str_append(buffer, "ERROR;");
|
|
break;
|
|
}
|
|
h5tools_render_element(stream, info, ctx, buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, 0, 0);
|
|
|
|
h5tools_str_reset(buffer);
|
|
|
|
str_type = H5Tcopy(H5T_C_S1);
|
|
if (is_vlstr)
|
|
H5Tset_size(str_type, H5T_VARIABLE);
|
|
else
|
|
H5Tset_size(str_type, size);
|
|
H5Tset_cset(str_type, cset);
|
|
H5Tset_strpad(str_type, str_pad);
|
|
|
|
h5tools_str_append(buffer, "%s ", CTYPE);
|
|
|
|
/* Check C variable-length string first. Are the two types equal? */
|
|
if (H5Tequal(tmp_type, str_type)) {
|
|
h5tools_str_append(buffer, "H5T_C_S1;");
|
|
goto done;
|
|
}
|
|
|
|
/* Change the endianness and see if they're equal. */
|
|
order = H5Tget_order(tmp_type);
|
|
if (order == H5T_ORDER_LE)
|
|
H5Tset_order(str_type, H5T_ORDER_LE);
|
|
else if (order == H5T_ORDER_BE)
|
|
H5Tset_order(str_type, H5T_ORDER_BE);
|
|
|
|
if (H5Tequal(tmp_type, str_type)) {
|
|
h5tools_str_append(buffer, "H5T_C_S1;");
|
|
goto done;
|
|
}
|
|
|
|
/* If not equal to C variable-length string, check Fortran type. */
|
|
if(H5Tclose(str_type) < 0)
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed");
|
|
str_type = H5Tcopy(H5T_FORTRAN_S1);
|
|
|
|
H5Tset_cset(str_type, cset);
|
|
H5Tset_size(str_type, size);
|
|
H5Tset_strpad(str_type, str_pad);
|
|
|
|
/* Are the two types equal? */
|
|
if (H5Tequal(tmp_type, str_type)) {
|
|
h5tools_str_append(buffer, "H5T_FORTRAN_S1;");
|
|
goto done;
|
|
}
|
|
|
|
/* Change the endianness and see if they're equal. */
|
|
order = H5Tget_order(tmp_type);
|
|
if (order == H5T_ORDER_LE)
|
|
H5Tset_order(str_type, H5T_ORDER_LE);
|
|
else if (order == H5T_ORDER_BE)
|
|
H5Tset_order(str_type, H5T_ORDER_BE);
|
|
|
|
if (H5Tequal(tmp_type, str_type)) {
|
|
h5tools_str_append(buffer, "H5T_FORTRAN_S1;");
|
|
goto done;
|
|
}
|
|
|
|
/* Type doesn't match any of above. */
|
|
h5tools_str_append(buffer, "unknown_one_character_type;");
|
|
|
|
done:
|
|
h5tools_render_element(stream, info, ctx, buffer, &curr_pos, ncols, 0, 0);
|
|
ctx->indent_level--;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, 0, 0);
|
|
|
|
h5tools_str_reset(buffer);
|
|
if(H5Tclose(str_type) < 0)
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed");
|
|
if(H5Tclose(tmp_type) < 0)
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed");
|
|
|
|
h5tools_str_append(buffer, "%s", h5tools_dump_header_format->strblockend);
|
|
break;
|
|
|
|
case H5T_BITFIELD:
|
|
if (H5Tequal(type, H5T_STD_B8BE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_STD_B8BE");
|
|
}
|
|
else if (H5Tequal(type, H5T_STD_B8LE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_STD_B8LE");
|
|
}
|
|
else if (H5Tequal(type, H5T_STD_B16BE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_STD_B16BE");
|
|
}
|
|
else if (H5Tequal(type, H5T_STD_B16LE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_STD_B16LE");
|
|
}
|
|
else if (H5Tequal(type, H5T_STD_B32BE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_STD_B32BE");
|
|
}
|
|
else if (H5Tequal(type, H5T_STD_B32LE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_STD_B32LE");
|
|
}
|
|
else if (H5Tequal(type, H5T_STD_B64BE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_STD_B64BE");
|
|
}
|
|
else if (H5Tequal(type, H5T_STD_B64LE) == TRUE) {
|
|
h5tools_str_append(buffer, "H5T_STD_B64LE");
|
|
}
|
|
else {
|
|
h5tools_str_append(buffer, "undefined bitfield");
|
|
}
|
|
break;
|
|
|
|
case H5T_OPAQUE:
|
|
h5tools_str_append(buffer, "H5T_OPAQUE %s", h5tools_dump_header_format->structblockbegin);
|
|
h5tools_render_element(stream, info, ctx, buffer, &curr_pos, ncols, 0, 0);
|
|
ctx->indent_level++;
|
|
{
|
|
char *ttag = H5Tget_tag(type);
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, 0, 0);
|
|
|
|
h5tools_str_reset(buffer);
|
|
h5tools_str_append(buffer, "OPAQUE_TAG \"%s\";", ttag);
|
|
h5tools_render_element(stream, info, ctx, buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
if (ttag)
|
|
HDfree(ttag);
|
|
}
|
|
ctx->indent_level--;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, 0, 0);
|
|
|
|
h5tools_str_reset(buffer);
|
|
h5tools_str_append(buffer, "%s", h5tools_dump_header_format->structblockend);
|
|
break;
|
|
|
|
case H5T_COMPOUND:
|
|
if((snmembers = H5Tget_nmembers(type)) < 0)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_nmembers failed");
|
|
nmembers = (unsigned)snmembers;
|
|
|
|
h5tools_str_append(buffer, "H5T_COMPOUND %s", h5tools_dump_header_format->structblockbegin);
|
|
h5tools_render_element(stream, info, ctx, buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->indent_level++;
|
|
for (i = 0; i < nmembers; i++) {
|
|
mname = H5Tget_member_name(type, i);
|
|
if((mtype = H5Tget_member_type(type, i))>=0) {
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, 0, 0);
|
|
|
|
h5tools_str_reset(buffer);
|
|
h5tools_print_datatype(stream, buffer, info, ctx, mtype, TRUE);
|
|
|
|
h5tools_str_append(buffer, " \"%s\";", mname);
|
|
h5tools_render_element(stream, info, ctx, buffer, &curr_pos, ncols, 0, 0);
|
|
if(H5Tclose(mtype) < 0)
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed");
|
|
}
|
|
else
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tget_member_type failed");
|
|
HDfree(mname);
|
|
}
|
|
ctx->indent_level--;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, 0, 0);
|
|
|
|
h5tools_str_reset(buffer);
|
|
h5tools_str_append(buffer, "%s", h5tools_dump_header_format->structblockend);
|
|
break;
|
|
|
|
case H5T_REFERENCE:
|
|
h5tools_str_append(buffer, "H5T_REFERENCE");
|
|
if (H5Tequal(type, H5T_STD_REF_DSETREG) == TRUE) {
|
|
h5tools_str_append(buffer, " { H5T_STD_REF_DSETREG }");
|
|
}
|
|
else {
|
|
h5tools_str_append(buffer, " { H5T_STD_REF_OBJECT }");
|
|
}
|
|
break;
|
|
|
|
case H5T_ENUM:
|
|
if((super = H5Tget_super(type)) < 0)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_nmembers failed");
|
|
|
|
h5tools_str_append(buffer, "H5T_ENUM %s", h5tools_dump_header_format->enumblockbegin);
|
|
h5tools_render_element(stream, info, ctx, buffer, &curr_pos, ncols, 0, 0);
|
|
ctx->indent_level++;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, 0, 0);
|
|
|
|
h5tools_str_reset(buffer);
|
|
h5tools_print_datatype(stream, buffer, info, ctx, super, TRUE);
|
|
|
|
if(H5Tclose(super) < 0)
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed");
|
|
|
|
h5tools_str_append(buffer, ";");
|
|
h5tools_render_element(stream, info, ctx, buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
h5tools_print_enum(stream, buffer, info, ctx, type);
|
|
|
|
ctx->indent_level--;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, 0, 0);
|
|
|
|
h5tools_str_reset(buffer);
|
|
h5tools_str_append(buffer, "%s", h5tools_dump_header_format->enumblockend);
|
|
|
|
break;
|
|
|
|
case H5T_VLEN:
|
|
if((super = H5Tget_super(type)) < 0)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_nmembers failed");
|
|
|
|
h5tools_str_append(buffer, "H5T_VLEN %s ", h5tools_dump_header_format->vlenblockbegin);
|
|
|
|
h5tools_print_datatype(stream, buffer, info, ctx, super, TRUE);
|
|
|
|
if(H5Tclose(super) < 0)
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed");
|
|
|
|
h5tools_str_append(buffer, "%s", h5tools_dump_header_format->vlenblockend);
|
|
|
|
break;
|
|
|
|
case H5T_ARRAY:
|
|
h5tools_str_append(buffer, "H5T_ARRAY { ");
|
|
|
|
/* Get array information */
|
|
if((sndims = H5Tget_array_ndims(type)) >= 0) {
|
|
unsigned ndims = (unsigned)sndims;
|
|
|
|
if(H5Tget_array_dims2(type, dims) >= 0) {
|
|
/* Print array dimensions */
|
|
for (i = 0; i < ndims; i++)
|
|
h5tools_str_append(buffer, "[" HSIZE_T_FORMAT "]", dims[i]);
|
|
|
|
h5tools_str_append(buffer, " ");
|
|
}
|
|
else
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tget_array_dims2 failed");
|
|
}
|
|
else
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tget_array_ndims failed");
|
|
|
|
/* Get array base type */
|
|
if((super = H5Tget_super(type)) >= 0) {
|
|
/* Print base type */
|
|
h5tools_print_datatype(stream, buffer, info, ctx, super, TRUE);
|
|
/* Close array base type */
|
|
if(H5Tclose(super) < 0)
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tclose failed");
|
|
}
|
|
else
|
|
HERROR(H5E_tools_g, H5E_tools_min_id_g, "H5Tget_super failed");
|
|
|
|
h5tools_str_append(buffer, " }");
|
|
|
|
break;
|
|
|
|
default:
|
|
h5tools_str_append(buffer, "unknown datatype");
|
|
break;
|
|
}
|
|
|
|
CATCH
|
|
return ret_value;
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: print_dataspace
|
|
*
|
|
* Purpose: print the dataspace.
|
|
*
|
|
* Return: void
|
|
*
|
|
* In/Out: h5tools_str_t *buffer
|
|
* h5tools_context_t *ctx
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
int
|
|
h5tools_print_dataspace(FILE *stream, h5tools_str_t *buffer, const h5tool_format_t *info,
|
|
h5tools_context_t *ctx, hid_t space)
|
|
{
|
|
HERR_INIT(int, SUCCEED)
|
|
hsize_t size[H5TOOLS_DUMP_MAX_RANK];
|
|
hsize_t maxsize[H5TOOLS_DUMP_MAX_RANK];
|
|
int ndims = -1;
|
|
H5S_class_t space_type = -1;
|
|
int i;
|
|
|
|
if((ndims = H5Sget_simple_extent_dims(space, size, maxsize)) < 0)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_dims failed");
|
|
|
|
if((space_type = H5Sget_simple_extent_type(space)) < 0)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Sget_simple_extent_type failed");
|
|
|
|
switch(space_type) {
|
|
case H5S_SCALAR:
|
|
/* scalar dataspace */
|
|
h5tools_str_append(buffer, "%s %s", h5tools_dump_header_format->dataspacedescriptionbegin, S_SCALAR);
|
|
break;
|
|
|
|
case H5S_SIMPLE:
|
|
/* simple dataspace */
|
|
h5tools_str_append(buffer, "%s %s { %s " HSIZE_T_FORMAT,
|
|
h5tools_dump_header_format->dataspacedescriptionbegin, S_SIMPLE,
|
|
h5tools_dump_header_format->dataspacedimbegin, size[0]);
|
|
|
|
for(i = 1; i < ndims; i++)
|
|
h5tools_str_append(buffer, ", " HSIZE_T_FORMAT, size[i]);
|
|
|
|
h5tools_str_append(buffer, " %s / ", h5tools_dump_header_format->dataspacedimend);
|
|
|
|
if(maxsize[0] == H5S_UNLIMITED)
|
|
h5tools_str_append(buffer, "%s %s",
|
|
h5tools_dump_header_format->dataspacedimbegin, "H5S_UNLIMITED");
|
|
else
|
|
h5tools_str_append(buffer, "%s " HSIZE_T_FORMAT,
|
|
h5tools_dump_header_format->dataspacedimbegin, maxsize[0]);
|
|
|
|
for(i = 1; i < ndims; i++)
|
|
if(maxsize[i] == H5S_UNLIMITED)
|
|
h5tools_str_append(buffer, ", %s", "H5S_UNLIMITED");
|
|
else
|
|
h5tools_str_append(buffer, ", " HSIZE_T_FORMAT, maxsize[i]);
|
|
|
|
h5tools_str_append(buffer, " %s }", h5tools_dump_header_format->dataspacedimend);
|
|
break;
|
|
|
|
case H5S_NULL:
|
|
/* null dataspace */
|
|
h5tools_str_append(buffer, "%s %s", h5tools_dump_header_format->dataspacedescriptionbegin, S_NULL);
|
|
break;
|
|
|
|
case H5S_NO_CLASS:
|
|
default:
|
|
h5tools_str_append(buffer, "%s unknown dataspace %s\n", BEGIN, END);
|
|
break;
|
|
} /* end switch */
|
|
|
|
CATCH
|
|
return ret_value;
|
|
}
|
|
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: print_enum
|
|
*
|
|
* Purpose: prints the enum data
|
|
*
|
|
* Return: void
|
|
*
|
|
* In/Out: h5tools_str_t *buffer
|
|
* h5tools_context_t *ctx
|
|
*
|
|
*-----------------------------------------------------------------------*/
|
|
int
|
|
h5tools_print_enum(FILE *stream, h5tools_str_t *buffer, const h5tool_format_t *info,
|
|
h5tools_context_t *ctx, hid_t type)
|
|
{
|
|
HERR_INIT(int, SUCCEED)
|
|
char **name = NULL; /*member names */
|
|
unsigned char *value = NULL; /*value array */
|
|
unsigned char *copy = NULL; /*a pointer to value array */
|
|
unsigned i;
|
|
unsigned nmembs = 0; /*number of members */
|
|
int snmembs;
|
|
int nchars; /*number of output characters */
|
|
hid_t super = -1; /*enum base integer type */
|
|
hid_t native = -1; /*native integer datatype */
|
|
H5T_sign_t sign_type; /*sign of value type */
|
|
size_t type_size; /*value type size */
|
|
size_t dst_size; /*destination value type size */
|
|
size_t ncols = 80; /*available output width */
|
|
hsize_t curr_pos = 0; /* total data element position */
|
|
|
|
if (info->line_ncols > 0)
|
|
ncols = info->line_ncols;
|
|
|
|
if((snmembs = H5Tget_nmembers(type)) < 0)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_nmembers failed");
|
|
nmembs = (unsigned)snmembs;
|
|
HDassert(nmembs > 0);
|
|
|
|
if((super = H5Tget_super(type)) < 0)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_super failed");
|
|
|
|
if((type_size = H5Tget_size(type)) <= 0)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_size(type) failed");
|
|
|
|
/*
|
|
* Determine what datatype to use for the native values. To simplify
|
|
* things we entertain three possibilities:
|
|
* 1. long long -- the largest native signed integer
|
|
* 2. unsigned long long -- the largest native unsigned integer
|
|
* 3. raw format
|
|
*/
|
|
if(type_size <= sizeof(long long)) {
|
|
dst_size = sizeof(long long);
|
|
|
|
if((sign_type = H5Tget_sign(type))<0)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_sign failed");
|
|
if(H5T_SGN_NONE == sign_type)
|
|
native = H5T_NATIVE_ULLONG;
|
|
else
|
|
native = H5T_NATIVE_LLONG;
|
|
} /* end if */
|
|
else
|
|
dst_size = type_size;
|
|
|
|
/* Get the names and raw values of all members */
|
|
if(NULL == (name = (char **)HDcalloc(nmembs, sizeof(char *))))
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for member name");
|
|
if(NULL == (value = (unsigned char *)HDcalloc(nmembs, MAX(type_size, dst_size))))
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "Could not allocate buffer for member value");
|
|
|
|
for (i = 0; i < nmembs; i++) {
|
|
name[i] = H5Tget_member_name(type, i);
|
|
if(H5Tget_member_value(type, i, value + i * type_size) < 0)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tget_member_value failed");
|
|
}
|
|
|
|
/* Convert values to native datatype */
|
|
if (native > 0)
|
|
if(H5Tconvert(super, native, nmembs, value, NULL, H5P_DEFAULT) < 0)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "H5Tconvert failed");
|
|
|
|
/*
|
|
* Sort members by increasing value
|
|
* ***not implemented yet***
|
|
*/
|
|
|
|
/* Print members */
|
|
for (i = 0; i < nmembs; i++) {
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, 0, 0);
|
|
|
|
h5tools_str_reset(buffer);
|
|
h5tools_str_append(buffer, "\"%s\"", name[i]);
|
|
nchars = HDstrlen(name[i]);
|
|
h5tools_str_append(buffer, "%*s ", MAX(0, 16 - nchars), "");
|
|
|
|
if (native < 0) {
|
|
size_t j;
|
|
|
|
h5tools_str_append(buffer, "0x");
|
|
|
|
for (j = 0; j < dst_size; j++)
|
|
h5tools_str_append(buffer, "%02x", value[i * dst_size + j]);
|
|
}
|
|
else if (H5T_SGN_NONE == H5Tget_sign(native)) {
|
|
/*On SGI Altix(cobalt), wrong values were printed out with "value+i*dst_size"
|
|
*strangely, unless use another pointer "copy".*/
|
|
copy = value + i * dst_size;
|
|
h5tools_str_append(buffer, HSIZE_T_FORMAT, *((unsigned long long *) ((void *) copy)));
|
|
}
|
|
else {
|
|
/*On SGI Altix(cobalt), wrong values were printed out with "value+i*dst_size"
|
|
*strangely, unless use another pointer "copy".*/
|
|
copy = value + i * dst_size;
|
|
h5tools_str_append(buffer, "%" H5_PRINTF_LL_WIDTH "d", *((long long *) ((void *) copy)));
|
|
}
|
|
|
|
h5tools_str_append(buffer, ";");
|
|
h5tools_render_element(stream, info, ctx, buffer, &curr_pos, ncols, 0, 0);
|
|
}
|
|
|
|
CATCH
|
|
if(name) {
|
|
/* Release resources */
|
|
for(i = 0; i < nmembs; i++)
|
|
if(name[i])
|
|
HDfree(name[i]);
|
|
HDfree(name);
|
|
} /* end if */
|
|
|
|
if(value)
|
|
HDfree(value);
|
|
|
|
if(super >= 0 && H5Tclose(super) < 0)
|
|
H5E_THROW(FAIL, H5E_tools_min_id_g, "Could not close datatype's super class");
|
|
|
|
if(0 == nmembs)
|
|
h5tools_str_append(buffer, "\n<empty>");
|
|
|
|
return ret_value;
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: dump_datatype
|
|
*
|
|
* Purpose: Dump the datatype. Datatype can be HDF5 predefined
|
|
* atomic datatype or committed/transient datatype.
|
|
*
|
|
* Return: void
|
|
*
|
|
* In/Out: h5tools_context_t *ctx
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
void
|
|
h5tools_dump_datatype(FILE *stream, const h5tool_format_t *info,
|
|
h5tools_context_t *ctx, hid_t type)
|
|
{
|
|
h5tools_str_t buffer; /* string into which to render */
|
|
size_t ncols = 80; /* available output width */
|
|
hsize_t curr_pos = ctx->sm_pos; /* total data element position */
|
|
/* pass to the prefix in h5tools_simple_prefix the total position
|
|
* instead of the current stripmine position i; this is necessary
|
|
* to print the array indices
|
|
*/
|
|
|
|
/* setup */
|
|
HDmemset(&buffer, 0, sizeof(h5tools_str_t));
|
|
|
|
if (info->line_ncols > 0)
|
|
ncols = info->line_ncols;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s %s ",
|
|
h5tools_dump_header_format->datatypebegin,
|
|
h5tools_dump_header_format->datatypeblockbegin);
|
|
h5tools_print_datatype(stream, &buffer, info, ctx, type, TRUE);
|
|
if (HDstrlen(h5tools_dump_header_format->datatypeblockend)) {
|
|
h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->datatypeblockend);
|
|
if (HDstrlen(h5tools_dump_header_format->datatypeend))
|
|
h5tools_str_append(&buffer, " ");
|
|
}
|
|
if (HDstrlen(h5tools_dump_header_format->datatypeend))
|
|
h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->datatypeend);
|
|
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
h5tools_str_close(&buffer);
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: dump_dataspace
|
|
*
|
|
* Purpose: Dump the dataspace.
|
|
*
|
|
* Return: void
|
|
*
|
|
* In/Out: h5tools_context_t *ctx
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
void
|
|
h5tools_dump_dataspace(FILE *stream, const h5tool_format_t *info,
|
|
h5tools_context_t *ctx, hid_t type)
|
|
{
|
|
h5tools_str_t buffer; /* string into which to render */
|
|
size_t ncols = 80; /* available output width */
|
|
hsize_t curr_pos = ctx->sm_pos; /* total data element position */
|
|
/* pass to the prefix in h5tools_simple_prefix the total position
|
|
* instead of the current stripmine position i; this is necessary
|
|
* to print the array indices
|
|
*/
|
|
|
|
/* setup */
|
|
HDmemset(&buffer, 0, sizeof(h5tools_str_t));
|
|
|
|
if (info->line_ncols > 0)
|
|
ncols = info->line_ncols;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s ",
|
|
h5tools_dump_header_format->dataspacebegin);
|
|
|
|
h5tools_print_dataspace(stream, &buffer, info, ctx, type);
|
|
|
|
if (HDstrlen(h5tools_dump_header_format->dataspaceblockend)) {
|
|
h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->dataspaceblockend);
|
|
if (HDstrlen(h5tools_dump_header_format->dataspaceend))
|
|
h5tools_str_append(&buffer, " ");
|
|
}
|
|
if (HDstrlen(h5tools_dump_header_format->dataspaceend))
|
|
h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->dataspaceend);
|
|
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
h5tools_str_close(&buffer);
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: dump_oid
|
|
*
|
|
* Purpose: Dump the oid.
|
|
*
|
|
* Return: void
|
|
*
|
|
* In/Out: h5tools_context_t *ctx
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
void
|
|
h5tools_dump_oid(FILE *stream, const h5tool_format_t *info,
|
|
h5tools_context_t *ctx, hid_t oid)
|
|
{
|
|
h5tools_str_t buffer; /* string into which to render */
|
|
size_t ncols = 80; /* available output width */
|
|
hsize_t curr_pos = ctx->sm_pos; /* total data element position */
|
|
/* pass to the prefix in h5tools_simple_prefix the total position
|
|
* instead of the current stripmine position i; this is necessary
|
|
* to print the array indices
|
|
*/
|
|
|
|
/* setup */
|
|
HDmemset(&buffer, 0, sizeof(h5tools_str_t));
|
|
|
|
if (info->line_ncols > 0)
|
|
ncols = info->line_ncols;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s %s %d %s", OBJID, BEGIN, oid, END);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
h5tools_str_close(&buffer);
|
|
}
|
|
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: dump_fill_value
|
|
*
|
|
* Purpose: prints the fill value
|
|
*
|
|
* Return: void
|
|
*
|
|
* Programmer: pvn
|
|
*
|
|
* Modifications:
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
void
|
|
h5tools_print_fill_value(h5tools_str_t *buffer/*in,out*/, const h5tool_format_t *info, h5tools_context_t *ctx/*in,out*/, hid_t dcpl, hid_t type_id, hid_t obj_id)
|
|
{
|
|
size_t size;
|
|
hid_t n_type;
|
|
hsize_t nelmts = 1;
|
|
void *buf = NULL;
|
|
|
|
n_type = h5tools_get_native_type(type_id);
|
|
|
|
size = H5Tget_size(n_type);
|
|
buf = HDmalloc(size);
|
|
|
|
H5Pget_fill_value(dcpl, n_type, buf);
|
|
|
|
h5tools_str_sprint(buffer, info, obj_id, n_type, buf, ctx);
|
|
|
|
H5Tclose(n_type);
|
|
|
|
if (buf)
|
|
HDfree (buf);
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: dump_dcpl
|
|
*
|
|
* Purpose: prints several dataset create property list properties
|
|
*
|
|
* Return: void
|
|
*
|
|
* Modifications: pvn, March 28, 2008
|
|
* Add a COMPRESSION ratio information for cases when filters are present
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
void
|
|
h5tools_dump_dcpl(FILE *stream, const h5tool_format_t *info,
|
|
h5tools_context_t *ctx, hid_t dcpl_id,hid_t type_id, hid_t obj_id)
|
|
{
|
|
int nfilters; /* number of filters */
|
|
int rank; /* rank */
|
|
int i;
|
|
unsigned j;
|
|
unsigned filt_flags; /* filter flags */
|
|
unsigned cd_values[20]; /* filter client data values */
|
|
unsigned szip_options_mask;
|
|
unsigned szip_pixels_per_block;
|
|
H5Z_filter_t filtn; /* filter identification number */
|
|
H5D_fill_value_t fvstatus;
|
|
H5D_alloc_time_t at;
|
|
H5D_fill_time_t ft;
|
|
size_t ncols = 80; /* available output width */
|
|
size_t cd_nelmts; /* filter client number of values */
|
|
off_t offset; /* offset of external file */
|
|
char f_name[256]; /* filter name */
|
|
char name[256]; /* external file name */
|
|
hsize_t chsize[64]; /* chunk size in elements */
|
|
hsize_t size; /* size of external file */
|
|
hsize_t storage_size;
|
|
hsize_t curr_pos = 0; /* total data element position */
|
|
h5tools_str_t buffer; /* string into which to render */
|
|
|
|
/* setup */
|
|
HDmemset(&buffer, 0, sizeof(h5tools_str_t));
|
|
if (info->line_ncols > 0)
|
|
ncols = info->line_ncols;
|
|
|
|
storage_size = H5Dget_storage_size(obj_id);
|
|
nfilters = H5Pget_nfilters(dcpl_id);
|
|
HDstrcpy(f_name,"\0");
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* STORAGE_LAYOUT
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s %s", STORAGE_LAYOUT, BEGIN);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
if(H5D_CHUNKED == H5Pget_layout(dcpl_id)) {
|
|
ctx->indent_level++;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s ", CHUNKED);
|
|
|
|
rank = H5Pget_chunk(dcpl_id,NELMTS(chsize),chsize);
|
|
h5tools_str_append(&buffer, "%s " HSIZE_T_FORMAT, h5tools_dump_header_format->dataspacedimbegin, chsize[0]);
|
|
for(i = 1; i < rank; i++)
|
|
h5tools_str_append(&buffer, ", " HSIZE_T_FORMAT, chsize[i]);
|
|
h5tools_str_append(&buffer, " %s", h5tools_dump_header_format->dataspacedimend);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
|
|
/* if there are filters, print a compression ratio */
|
|
if(nfilters) {
|
|
hsize_t dims[H5S_MAX_RANK];
|
|
hsize_t nelmts = 1;
|
|
double ratio = 0;
|
|
int ok = 0;
|
|
|
|
hid_t tid = H5Dget_type(obj_id);
|
|
hid_t sid = H5Dget_space(obj_id);
|
|
size_t datum_size = H5Tget_size(tid);
|
|
int ndims = H5Sget_simple_extent_dims(sid, dims, NULL);
|
|
|
|
/* only print the compression ratio for these filters */
|
|
for(i = 0; i < nfilters; i++) {
|
|
cd_nelmts = NELMTS(cd_values);
|
|
filtn = H5Pget_filter2(dcpl_id, (unsigned)i, &filt_flags, &cd_nelmts,
|
|
cd_values, sizeof(f_name), f_name, NULL);
|
|
|
|
switch(filtn) {
|
|
case H5Z_FILTER_DEFLATE:
|
|
case H5Z_FILTER_SZIP:
|
|
case H5Z_FILTER_NBIT:
|
|
case H5Z_FILTER_SCALEOFFSET:
|
|
ok = 1;
|
|
break;
|
|
}
|
|
}
|
|
|
|
if(ndims && ok) {
|
|
hsize_t uncomp_size;
|
|
|
|
for(i = 0; i < ndims; i++) {
|
|
nelmts *= dims[i];
|
|
}
|
|
uncomp_size = nelmts * datum_size;
|
|
|
|
/* compression ratio = uncompressed size / compressed size */
|
|
|
|
if(storage_size != 0)
|
|
ratio = (double) uncomp_size / (double) storage_size;
|
|
|
|
h5tools_str_append(&buffer, "SIZE " HSIZE_T_FORMAT" (%.3f:1 COMPRESSION)", storage_size, ratio);
|
|
|
|
}
|
|
else
|
|
h5tools_str_append(&buffer, "SIZE " HSIZE_T_FORMAT, storage_size);
|
|
|
|
H5Sclose(sid);
|
|
H5Tclose(tid);
|
|
|
|
}
|
|
else {
|
|
h5tools_str_append(&buffer, "SIZE " HSIZE_T_FORMAT, storage_size);
|
|
}
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->indent_level--;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s",END);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
}
|
|
else if(H5D_COMPACT == H5Pget_layout(dcpl_id)) {
|
|
ctx->indent_level++;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s", COMPACT);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "SIZE " HSIZE_T_FORMAT, storage_size);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->indent_level--;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s",END);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
}
|
|
else if(H5D_CONTIGUOUS == H5Pget_layout(dcpl_id)) {
|
|
int next;
|
|
|
|
next = H5Pget_external_count(dcpl_id);
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* EXTERNAL_FILE
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
if(next) {
|
|
ctx->indent_level++;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s", CONTIGUOUS);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s %s", EXTERNAL, BEGIN);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->indent_level++;
|
|
for(j = 0; j < (unsigned)next; j++) {
|
|
H5Pget_external(dcpl_id, j, sizeof(name), name, &offset, &size);
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "FILENAME %s SIZE " HSIZE_T_FORMAT, name, size);
|
|
h5tools_str_append(&buffer, " OFFSET %ld", offset);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
}
|
|
ctx->indent_level--;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s",END);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->indent_level--;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s",END);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
}
|
|
else {
|
|
haddr_t ioffset;
|
|
|
|
ctx->indent_level++;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s", CONTIGUOUS);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer,"SIZE " HSIZE_T_FORMAT, storage_size);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
ioffset = H5Dget_offset(obj_id);
|
|
h5tools_str_append(&buffer,"OFFSET "H5_PRINTF_HADDR_FMT, ioffset);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->indent_level--;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s",END);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
}
|
|
}
|
|
/*-------------------------------------------------------------------------
|
|
* FILTERS
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s %s", FILTERS, BEGIN);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->indent_level++;
|
|
|
|
if(nfilters) {
|
|
for(i = 0; i < nfilters; i++) {
|
|
cd_nelmts = NELMTS(cd_values);
|
|
filtn = H5Pget_filter2(dcpl_id, (unsigned)i, &filt_flags, &cd_nelmts,
|
|
cd_values, sizeof(f_name), f_name, NULL);
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
switch(filtn) {
|
|
case H5Z_FILTER_DEFLATE:
|
|
h5tools_str_append(&buffer, "%s %s %s %d %s", DEFLATE, BEGIN, DEFLATE_LEVEL, cd_values[0], END);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
break;
|
|
case H5Z_FILTER_SHUFFLE:
|
|
h5tools_str_append(&buffer, "%s", SHUFFLE);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
break;
|
|
case H5Z_FILTER_FLETCHER32:
|
|
h5tools_str_append(&buffer, "%s", FLETCHER32);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
break;
|
|
case H5Z_FILTER_SZIP:
|
|
{
|
|
szip_options_mask = cd_values[0];;
|
|
szip_pixels_per_block = cd_values[1];
|
|
|
|
h5tools_str_append(&buffer, "%s %s",SZIP, BEGIN);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->indent_level++;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "PIXELS_PER_BLOCK %d", szip_pixels_per_block);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
if(szip_options_mask & H5_SZIP_CHIP_OPTION_MASK)
|
|
h5tools_str_append(&buffer, "MODE %s", "HARDWARE");
|
|
else if(szip_options_mask & H5_SZIP_ALLOW_K13_OPTION_MASK)
|
|
h5tools_str_append(&buffer, "MODE %s", "K13");
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
if(szip_options_mask & H5_SZIP_EC_OPTION_MASK)
|
|
h5tools_str_append(&buffer, "CODING %s", "ENTROPY");
|
|
else if(szip_options_mask & H5_SZIP_NN_OPTION_MASK)
|
|
h5tools_str_append(&buffer, "CODING %s", "NEAREST NEIGHBOUR");
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
if(szip_options_mask & H5_SZIP_LSB_OPTION_MASK)
|
|
h5tools_str_append(&buffer, "BYTE_ORDER %s", "LSB");
|
|
else if(szip_options_mask & H5_SZIP_MSB_OPTION_MASK)
|
|
h5tools_str_append(&buffer, "BYTE_ORDER %s", "MSB");
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
if(szip_options_mask & H5_SZIP_RAW_OPTION_MASK) {
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "HEADER %s", "RAW");
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
}
|
|
|
|
ctx->indent_level--;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s",END);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
}
|
|
break;
|
|
case H5Z_FILTER_NBIT:
|
|
h5tools_str_append(&buffer, "%s", NBIT);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
break;
|
|
case H5Z_FILTER_SCALEOFFSET:
|
|
h5tools_str_append(&buffer, "%s %s %s %d %s", SCALEOFFSET, BEGIN, SCALEOFFSET_MINBIT, cd_values[0], END);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
break;
|
|
default:
|
|
if(H5Zfilter_avail(filtn))
|
|
h5tools_str_append(&buffer, "%s %s", "USER_REGISTERED_FILTER", BEGIN);
|
|
else
|
|
h5tools_str_append(&buffer, "%s %s", "UNKNOWN_FILTER", BEGIN);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->indent_level++;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "FILTER_ID %d", filtn);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
if(f_name[0] != '\0') {
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "COMMENT %s", f_name);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
}
|
|
if (cd_nelmts) {
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s %s ","PARAMS", BEGIN);
|
|
for (j=0; j<cd_nelmts; j++)
|
|
h5tools_str_append(&buffer, "%d ", cd_values[j]);
|
|
h5tools_str_append(&buffer, "%s", END);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
}
|
|
ctx->indent_level--;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s",END);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
break;
|
|
}/*switch*/
|
|
} /*i*/
|
|
}/*nfilters*/
|
|
else {
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "NONE");
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
}
|
|
ctx->indent_level--;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s",END);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* FILLVALUE
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s %s", FILLVALUE, BEGIN);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->indent_level++;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "FILL_TIME ");
|
|
|
|
H5Pget_fill_time(dcpl_id, &ft);
|
|
switch(ft) {
|
|
case H5D_FILL_TIME_ALLOC:
|
|
h5tools_str_append(&buffer, "%s", "H5D_FILL_TIME_ALLOC");
|
|
break;
|
|
case H5D_FILL_TIME_NEVER:
|
|
h5tools_str_append(&buffer, "%s", "H5D_FILL_TIME_NEVER");
|
|
break;
|
|
case H5D_FILL_TIME_IFSET:
|
|
h5tools_str_append(&buffer, "%s", "H5D_FILL_TIME_IFSET");
|
|
break;
|
|
default:
|
|
HDassert(0);
|
|
break;
|
|
}
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s ", "VALUE ");
|
|
H5Pfill_value_defined(dcpl_id, &fvstatus);
|
|
if(fvstatus == H5D_FILL_VALUE_UNDEFINED)
|
|
h5tools_str_append(&buffer, "%s", "H5D_FILL_VALUE_UNDEFINED");
|
|
else {
|
|
ctx->indent_level--;
|
|
h5tools_print_fill_value(&buffer, info, ctx, dcpl_id, type_id, obj_id);
|
|
ctx->indent_level++;
|
|
}
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
ctx->indent_level--;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s", END);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* ALLOCATION_TIME
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "ALLOCATION_TIME %s", BEGIN);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->indent_level++;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
H5Pget_alloc_time(dcpl_id, &at);
|
|
switch(at) {
|
|
case H5D_ALLOC_TIME_EARLY:
|
|
h5tools_str_append(&buffer, "%s", "H5D_ALLOC_TIME_EARLY");
|
|
break;
|
|
case H5D_ALLOC_TIME_INCR:
|
|
h5tools_str_append(&buffer, "%s", "H5D_ALLOC_TIME_INCR");
|
|
break;
|
|
case H5D_ALLOC_TIME_LATE:
|
|
h5tools_str_append(&buffer, "%s", "H5D_ALLOC_TIME_LATE");
|
|
break;
|
|
default:
|
|
HDassert(0);
|
|
break;
|
|
}
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->indent_level--;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s", END);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
h5tools_str_close(&buffer);
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: dump_comment
|
|
*
|
|
* Purpose: prints the comment for the the object name
|
|
*
|
|
* Return: void
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
void
|
|
h5tools_dump_comment(FILE *stream, const h5tool_format_t *info,
|
|
h5tools_context_t *ctx, hid_t obj_id)
|
|
{
|
|
char *comment = NULL;
|
|
ssize_t cmt_bufsize = -1;
|
|
size_t buf_size = 0;
|
|
size_t ncols = 80; /* available output width */
|
|
h5tools_str_t buffer; /* string into which to render */
|
|
hsize_t curr_pos = ctx->sm_pos; /* total data element position */
|
|
/* pass to the prefix in h5tools_simple_prefix the total position
|
|
* instead of the current stripmine position i; this is necessary
|
|
* to print the array indices
|
|
*/
|
|
|
|
/* setup */
|
|
HDmemset(&buffer, 0, sizeof(h5tools_str_t));
|
|
|
|
if (info->line_ncols > 0)
|
|
ncols = info->line_ncols;
|
|
|
|
cmt_bufsize = H5Oget_comment(obj_id, comment, buf_size);
|
|
|
|
/* call H5Oget_comment again with the correct value.
|
|
* If the call to H5Oget_comment returned an error, skip this block */
|
|
if (cmt_bufsize > 0) {
|
|
comment = (char *)HDmalloc((size_t)(cmt_bufsize+1)); /* new_size including null terminator */
|
|
if(comment) {
|
|
cmt_bufsize = H5Oget_comment(obj_id, comment, cmt_bufsize);
|
|
if(cmt_bufsize > 0) {
|
|
comment[cmt_bufsize] = '\0'; /* necessary because null char is not returned */
|
|
|
|
ctx->need_prefix = TRUE;
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "COMMENT \"%s\"", comment);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
h5tools_str_close(&buffer);
|
|
} /* end if */
|
|
HDfree(comment);
|
|
}
|
|
}
|
|
} /* end dump_comment() */
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: dump_attribute
|
|
*
|
|
* Purpose: Dump the attribute.
|
|
*
|
|
* Return: void
|
|
*
|
|
* In/Out: h5tools_context_t *ctx
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
void
|
|
h5tools_dump_attribute(FILE *stream, const h5tool_format_t *info,
|
|
h5tools_context_t *ctx, hid_t oid, const char *attr_name, hid_t attr_id,
|
|
int display_index, int display_char)
|
|
{
|
|
h5tools_str_t buffer; /* string into which to render */
|
|
size_t ncols = 80; /* available output width */
|
|
hsize_t curr_pos = ctx->sm_pos; /* total data element position */
|
|
/* pass to the prefix in h5tools_simple_prefix the total position
|
|
* instead of the current stripmine position i; this is necessary
|
|
* to print the array indices
|
|
*/
|
|
|
|
/* setup */
|
|
HDmemset(&buffer, 0, sizeof(h5tools_str_t));
|
|
|
|
if (info->line_ncols > 0)
|
|
ncols = info->line_ncols;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, curr_pos, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s \"%s\" %s",
|
|
h5tools_dump_header_format->attributebegin, attr_name,
|
|
h5tools_dump_header_format->attributeblockbegin);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
if(attr_id < 0) {
|
|
error_msg("unable to open attribute \"%s\"\n", attr_name);
|
|
}
|
|
else {
|
|
hid_t type, space;
|
|
|
|
ctx->indent_level++;
|
|
|
|
type = H5Aget_type(attr_id);
|
|
h5tools_dump_datatype(stream, info, ctx, type);
|
|
|
|
space = H5Aget_space(attr_id);
|
|
h5tools_dump_dataspace(stream, info, ctx, space);
|
|
|
|
if(oid_output)
|
|
h5tools_dump_oid(stream, info, ctx, attr_id);
|
|
|
|
if(data_output || attr_data_output)
|
|
h5tools_dump_data(stream, info, ctx, attr_id, FALSE, NULL, display_index, display_char);
|
|
|
|
ctx->indent_level--;
|
|
|
|
H5Tclose(type);
|
|
H5Sclose(space);
|
|
H5Aclose(attr_id);
|
|
}
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, 0, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
|
|
if (HDstrlen(h5tools_dump_header_format->attributeblockend)) {
|
|
h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->attributeblockend);
|
|
if (HDstrlen(h5tools_dump_header_format->attributeend))
|
|
h5tools_str_append(&buffer, " ");
|
|
}
|
|
if (HDstrlen(h5tools_dump_header_format->attributeend))
|
|
h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->attributeend);
|
|
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
h5tools_str_close(&buffer);
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: dump_dims
|
|
*
|
|
* Purpose: Dump the dimensions handed to it in a comma separated list
|
|
*
|
|
* Return: void
|
|
*
|
|
* Programmer: Bill Wendling
|
|
* Tuesday, 27. February 2001
|
|
*
|
|
* Modifications:
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
void
|
|
h5tools_print_dims(h5tools_str_t *buffer, hsize_t *s, int dims)
|
|
{
|
|
int i;
|
|
|
|
for (i = 0; i < dims; i++) {
|
|
h5tools_str_append(buffer, HSIZE_T_FORMAT, s[i]);
|
|
|
|
if (i + 1 != dims) h5tools_str_append(buffer, ", ");
|
|
}
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: print_packed_bits
|
|
*
|
|
* Purpose: Prints the packed bits offset and length
|
|
*
|
|
* Return: void
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
void
|
|
h5tools_print_packed_bits(h5tools_str_t *buffer, hid_t type)
|
|
{
|
|
int packed_bits_size = 0;
|
|
|
|
hid_t n_type = h5tools_get_native_type(type);
|
|
if(H5Tget_class(n_type)==H5T_INTEGER) {
|
|
if(H5Tequal(n_type, H5T_NATIVE_SCHAR) == TRUE) {
|
|
packed_bits_size = 8 * sizeof(char);
|
|
}
|
|
else if(H5Tequal(n_type, H5T_NATIVE_UCHAR) == TRUE) {
|
|
packed_bits_size = 8 * sizeof(unsigned char);
|
|
}
|
|
else if(H5Tequal(n_type, H5T_NATIVE_SHORT) == TRUE) {
|
|
packed_bits_size = 8 * sizeof(short);
|
|
}
|
|
else if(H5Tequal(n_type, H5T_NATIVE_USHORT) == TRUE) {
|
|
packed_bits_size = 8 * sizeof(unsigned short);
|
|
}
|
|
else if(H5Tequal(n_type, H5T_NATIVE_INT) == TRUE) {
|
|
packed_bits_size = 8 * sizeof(int);
|
|
}
|
|
else if(H5Tequal(n_type, H5T_NATIVE_UINT) == TRUE) {
|
|
packed_bits_size = 8 * sizeof(unsigned int);
|
|
}
|
|
else if(H5Tequal(n_type, H5T_NATIVE_LONG) == TRUE) {
|
|
packed_bits_size = 8 * sizeof(long);
|
|
}
|
|
else if(H5Tequal(n_type, H5T_NATIVE_ULONG) == TRUE) {
|
|
packed_bits_size = 8 * sizeof(unsigned long);
|
|
}
|
|
else if(H5Tequal(n_type, H5T_NATIVE_LLONG) == TRUE) {
|
|
packed_bits_size = 8 * sizeof(long long);
|
|
}
|
|
else if(H5Tequal(n_type, H5T_NATIVE_ULLONG) == TRUE) {
|
|
packed_bits_size = 8 * sizeof(unsigned long long);
|
|
}
|
|
else
|
|
error_msg("Packed Bit not valid for this datatype");
|
|
}
|
|
|
|
if ((packed_bits_size>0) && (packed_data_offset + packed_data_length) > packed_bits_size) {
|
|
error_msg("Packed Bit offset+length value(%d) too large. Max is %d\n", packed_data_offset+packed_data_length, packed_bits_size);
|
|
packed_data_mask = 0;
|
|
};
|
|
h5tools_str_append(buffer, "%s %s=%d %s=%d", PACKED_BITS, PACKED_OFFSET, packed_data_offset, PACKED_LENGTH, packed_data_length);
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: dump_subsetting_header
|
|
*
|
|
* Purpose: Dump the subsetting header like specified in the DDL.
|
|
*
|
|
* Return: void
|
|
*
|
|
* Programmer: Bill Wendling
|
|
* Tuesday, 27. February 2001
|
|
*
|
|
* Modifications:
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
void
|
|
h5tools_dump_subsetting_header(FILE *stream, const h5tool_format_t *info,
|
|
h5tools_context_t *ctx, struct subset_t *sset, int dims)
|
|
{
|
|
h5tools_str_t buffer; /* string into which to render */
|
|
hsize_t curr_pos = 0; /* total data element position */
|
|
size_t ncols = 80; /* available output width */
|
|
|
|
/* setup */
|
|
HDmemset(&buffer, 0, sizeof(h5tools_str_t));
|
|
if (info->line_ncols > 0)
|
|
ncols = info->line_ncols;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, 0, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s %s", h5tools_dump_header_format->subsettingbegin, h5tools_dump_header_format->subsettingblockbegin);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->indent_level++;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, 0, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s %s ", h5tools_dump_header_format->startbegin, h5tools_dump_header_format->startblockbegin);
|
|
h5tools_print_dims(&buffer, sset->start.data, dims);
|
|
h5tools_str_append(&buffer, "%s %s", h5tools_dump_header_format->startend, h5tools_dump_header_format->startblockend);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, 0, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s %s ", h5tools_dump_header_format->stridebegin, h5tools_dump_header_format->strideblockbegin);
|
|
h5tools_print_dims(&buffer, sset->stride.data, dims);
|
|
h5tools_str_append(&buffer, "%s %s", h5tools_dump_header_format->strideend, h5tools_dump_header_format->strideblockend);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, 0, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s %s ", h5tools_dump_header_format->countbegin, h5tools_dump_header_format->countblockbegin);
|
|
|
|
if(sset->count.data)
|
|
h5tools_print_dims(&buffer, sset->count.data, dims);
|
|
else
|
|
h5tools_str_append(&buffer, "DEFAULT");
|
|
|
|
h5tools_str_append(&buffer, "%s %s", h5tools_dump_header_format->countend, h5tools_dump_header_format->countblockend);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, ctx, 0, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s %s ", h5tools_dump_header_format->blockbegin, h5tools_dump_header_format->blockblockbegin);
|
|
|
|
if(sset->block.data)
|
|
h5tools_print_dims(&buffer, sset->block.data, dims);
|
|
else
|
|
h5tools_str_append(&buffer, "DEFAULT");
|
|
|
|
h5tools_str_append(&buffer, "%s %s", h5tools_dump_header_format->blockend, h5tools_dump_header_format->blockblockend);
|
|
h5tools_render_element(stream, info, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
ctx->indent_level--;
|
|
|
|
h5tools_str_close(&buffer);
|
|
}
|
|
|
|
/*-------------------------------------------------------------------------
|
|
* Function: dump_data
|
|
*
|
|
* Purpose: Dump attribute or dataset data
|
|
*
|
|
* Return: void
|
|
*
|
|
*-------------------------------------------------------------------------
|
|
*/
|
|
void
|
|
h5tools_dump_data(FILE *stream, const h5tool_format_t *info,
|
|
h5tools_context_t *ctx, hid_t obj_id, int obj_data, struct subset_t *sset,
|
|
int display_index, int display_char)
|
|
{
|
|
H5S_class_t space_type;
|
|
int ndims;
|
|
int i;
|
|
hid_t space;
|
|
hid_t type;
|
|
hid_t p_type;
|
|
hsize_t size[64];
|
|
hsize_t alloc_size;
|
|
hsize_t nelmts = 1;
|
|
int status = -1;
|
|
void *buf = NULL;
|
|
h5tools_str_t buffer; /* string into which to render */
|
|
hsize_t curr_pos = 0; /* total data element position */
|
|
size_t ncols = 80; /* available output width */
|
|
h5tool_format_t string_dataformat;
|
|
h5tool_format_t outputformat;
|
|
|
|
/* setup */
|
|
HDmemset(&buffer, 0, sizeof(h5tools_str_t));
|
|
if (info->line_ncols > 0)
|
|
ncols = info->line_ncols;
|
|
|
|
outputformat = *info;
|
|
string_dataformat = *info;
|
|
/* print the matrix indices */
|
|
string_dataformat.pindex = display_index;
|
|
|
|
/* do not print indices for regions */
|
|
if(obj_data) {
|
|
hid_t f_type = H5Dget_type(obj_id);
|
|
|
|
if (H5Tequal(f_type, H5T_STD_REF_DSETREG)) {
|
|
/* For the region option, correct the display of indices */
|
|
if (region_output) {
|
|
if (!string_dataformat.pindex) {
|
|
string_dataformat.idx_fmt = "";
|
|
string_dataformat.idx_n_fmt = "";
|
|
string_dataformat.idx_sep = "";
|
|
string_dataformat.line_pre = "";
|
|
}
|
|
}
|
|
else
|
|
string_dataformat.pindex = 0;
|
|
}
|
|
H5Tclose(f_type);
|
|
}
|
|
|
|
if (string_dataformat.pindex) {
|
|
string_dataformat.idx_fmt = "(%s): ";
|
|
string_dataformat.idx_n_fmt = HSIZE_T_FORMAT;
|
|
string_dataformat.idx_sep = ",";
|
|
string_dataformat.line_pre = "%s";
|
|
}
|
|
info = &string_dataformat;
|
|
|
|
if (sset && obj_data) {
|
|
hid_t f_space = H5Dget_space(obj_id);
|
|
|
|
h5tools_dump_subsetting_header(stream, &outputformat, ctx, sset, H5Sget_simple_extent_ndims(f_space));
|
|
H5Sclose(f_space);
|
|
|
|
ctx->indent_level++;
|
|
}
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "%s %s", h5tools_dump_header_format->databegin, h5tools_dump_header_format->datablockbegin);
|
|
h5tools_render_element(stream, &outputformat, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
/* Print all the values. */
|
|
if(obj_data) {
|
|
h5tools_context_t datactx = *ctx; /* print context */
|
|
hid_t f_type = H5Dget_type(obj_id);
|
|
|
|
if((display_char && H5Tget_size(f_type) == 1) && (H5Tget_class(f_type) == H5T_INTEGER)) {
|
|
/*
|
|
* Print 1-byte integer data as an ASCII character string
|
|
* instead of integers if the `-r' or `--string' command-line
|
|
* option was given.
|
|
*
|
|
* We don't want to modify the global dataformat, so make a
|
|
* copy of it instead.
|
|
*/
|
|
string_dataformat = *info;
|
|
string_dataformat.idx_fmt = "\"";
|
|
info = &string_dataformat;
|
|
datactx.indent_level++;
|
|
datactx.need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, &datactx, 0, 0);
|
|
|
|
string_dataformat = *info;
|
|
string_dataformat.idx_fmt = "\"";
|
|
string_dataformat.line_multi_new = 1;
|
|
string_dataformat.str_repeat = 8;
|
|
string_dataformat.ascii = TRUE;
|
|
string_dataformat.elmt_suf1 = "";
|
|
string_dataformat.elmt_suf2 = "";
|
|
string_dataformat.line_suf = "\"";
|
|
info = &string_dataformat;
|
|
}
|
|
else
|
|
datactx.need_prefix = TRUE;
|
|
status = h5tools_dump_dset(stream, info, &datactx, obj_id, -1, sset);
|
|
if((display_char && H5Tget_size(f_type) == 1) && (H5Tget_class(f_type) == H5T_INTEGER)) {
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "\"");
|
|
h5tools_render_element(stream, &outputformat, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
}
|
|
H5Tclose(f_type);
|
|
}
|
|
else {
|
|
h5tools_context_t datactx = *ctx; /* print context */
|
|
/* need to call h5tools_dump_mem for the attribute data */
|
|
space = H5Aget_space(obj_id);
|
|
space_type = H5Sget_simple_extent_type(space);
|
|
if(space_type == H5S_NULL || space_type == H5S_NO_CLASS) {
|
|
status = SUCCEED;
|
|
}
|
|
else {
|
|
/* VL data special information */
|
|
unsigned int vl_data = 0; /* contains VL datatypes */
|
|
|
|
type = H5Aget_type(obj_id);
|
|
p_type = h5tools_get_native_type(type);
|
|
|
|
ndims = H5Sget_simple_extent_dims(space, size, NULL);
|
|
|
|
/* Check if we have VL data in the dataset's datatype */
|
|
if (h5tools_detect_vlen(p_type) == TRUE)
|
|
vl_data = TRUE;
|
|
|
|
for (i = 0; i < ndims; i++)
|
|
nelmts *= size[i];
|
|
|
|
alloc_size = nelmts * MAX(H5Tget_size(type), H5Tget_size(p_type));
|
|
HDassert(alloc_size == (hsize_t)((size_t)alloc_size)); /*check for overflow*/
|
|
|
|
if(alloc_size) {
|
|
buf = HDmalloc((size_t)alloc_size);
|
|
HDassert(buf);
|
|
|
|
if (H5Aread(obj_id, p_type, buf) >= 0)
|
|
if (display_char && H5Tget_size(type) == 1 && H5Tget_class(type) == H5T_INTEGER) {
|
|
/*
|
|
* Print 1-byte integer data as an ASCII character string
|
|
* instead of integers if the `-r' or `--string' command-line
|
|
* option was given.
|
|
*
|
|
* We don't want to modify the global dataformat, so make a
|
|
* copy of it instead.
|
|
*/
|
|
string_dataformat = *info;
|
|
string_dataformat.idx_fmt = "\"";
|
|
info = &string_dataformat;
|
|
datactx.indent_level++;
|
|
datactx.need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, info, &datactx, 0, 0);
|
|
|
|
string_dataformat = *info;
|
|
string_dataformat.idx_fmt = "\"";
|
|
string_dataformat.line_multi_new = 1;
|
|
string_dataformat.str_repeat = 8;
|
|
string_dataformat.ascii = TRUE;
|
|
string_dataformat.elmt_suf1 = "";
|
|
string_dataformat.elmt_suf2 = "";
|
|
string_dataformat.line_suf = "\"";
|
|
info = &string_dataformat;
|
|
}
|
|
else
|
|
datactx.need_prefix = TRUE;
|
|
|
|
status = h5tools_dump_mem(stream, info, &datactx, obj_id, p_type, space, buf);
|
|
if (display_char && H5Tget_size(type) == 1 && H5Tget_class(type) == H5T_INTEGER) {
|
|
h5tools_str_reset(&buffer);
|
|
h5tools_str_append(&buffer, "\"");
|
|
h5tools_render_element(stream, &outputformat, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
}
|
|
|
|
/* Reclaim any VL memory, if necessary */
|
|
if (vl_data)
|
|
H5Dvlen_reclaim(p_type, space, H5P_DEFAULT, buf);
|
|
|
|
HDfree(buf);
|
|
}
|
|
else
|
|
status = SUCCEED;
|
|
|
|
H5Tclose(p_type);
|
|
H5Tclose(type);
|
|
}
|
|
H5Sclose(space);
|
|
}
|
|
|
|
if (status == FAIL) {
|
|
error_msg("unable to print data\n");
|
|
h5tools_setstatus(EXIT_FAILURE);
|
|
}
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, &outputformat, ctx, 0, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
if(HDstrlen(h5tools_dump_header_format->datablockend)) {
|
|
h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->datablockend);
|
|
if(HDstrlen(h5tools_dump_header_format->dataend))
|
|
h5tools_str_append(&buffer, " ");
|
|
}
|
|
if(HDstrlen(h5tools_dump_header_format->dataend))
|
|
h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->dataend);
|
|
h5tools_render_element(stream, &outputformat, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
|
|
if (sset && obj_data) {
|
|
ctx->indent_level--;
|
|
|
|
ctx->need_prefix = TRUE;
|
|
h5tools_simple_prefix(stream, &outputformat, ctx, 0, 0);
|
|
|
|
h5tools_str_reset(&buffer);
|
|
if(HDstrlen(h5tools_dump_header_format->subsettingblockend)) {
|
|
h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->subsettingblockend);
|
|
if(HDstrlen(h5tools_dump_header_format->subsettingend))
|
|
h5tools_str_append(&buffer, " ");
|
|
}
|
|
if(HDstrlen(h5tools_dump_header_format->subsettingend))
|
|
h5tools_str_append(&buffer, "%s", h5tools_dump_header_format->subsettingend);
|
|
h5tools_render_element(stream, &outputformat, ctx, &buffer, &curr_pos, ncols, 0, 0);
|
|
}
|
|
|
|
h5tools_str_close(&buffer);
|
|
}
|
|
|