/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the COPYING file, which can be found at the root of the source code * * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* * Purpose: Tests various aspects of indexed raw data storage. */ #define H5F_FRIEND /*suppress error about including H5Fpkg */ #include "h5test.h" #include "H5Dprivate.h" #include "H5Iprivate.h" #include "H5Pprivate.h" #include "H5Fpkg.h" #include "H5Gprivate.h" #include "H5Oprivate.h" #include "H5VMprivate.h" static const char *FILENAME[] = {"istore", NULL}; #define TEST_SMALL 0x0001 #define TEST_MEDIUM 0x0002 #define TEST_LARGE 0x0004 /* The datatype of the dataset operated on by this test */ #define TEST_DATATYPE H5T_NATIVE_UCHAR #define TEST_CHUNK_SIZE 50 #define TEST_SPARSE_SIZE 1000000 hsize_t chunk_dims[H5O_LAYOUT_NDIMS]; hsize_t zero[H5O_LAYOUT_NDIMS]; /*------------------------------------------------------------------------- * Function: is_sparse * * Purpose: Determines if the file system of the current working * directory supports holes. * * Return: Success: Non-zero if holes are supported; zero * otherwise. * * Failure: zero * *------------------------------------------------------------------------- */ static int is_sparse(void) { int fd; h5_stat_t sb; if ((fd = HDopen("x.h5", O_RDWR | O_TRUNC | O_CREAT, H5_POSIX_CREATE_MODE_RW)) < 0) return 0; if (HDlseek(fd, (1024 * 1024), SEEK_SET) != 1024 * 1024) return 0; if (5 != HDwrite(fd, "hello", (size_t)5)) return 0; if (HDclose(fd) < 0) return 0; memset(&sb, 0, sizeof(h5_stat_t)); if (HDstat("x.h5", &sb) < 0) return 0; if (HDremove("x.h5") < 0) return 0; #ifdef H5_HAVE_STAT_ST_BLOCKS return ((unsigned long)sb.st_blocks * 512 < (unsigned long)sb.st_size); #else return (0); #endif } /*------------------------------------------------------------------------- * Function: print_array * * Purpose: Prints the values in an array * * Return: void * *------------------------------------------------------------------------- */ static void print_array(uint8_t *array, size_t nx, size_t ny, size_t nz) { size_t i, j, k; for (i = 0; i < nx; i++) { if (nz > 1) { fprintf(stderr, "i=%lu:\n", (unsigned long)i); } else { fprintf(stderr, "%03lu:", (unsigned long)i); } for (j = 0; j < ny; j++) { if (nz > 1) fprintf(stderr, "%03lu:", (unsigned long)j); for (k = 0; k < nz; k++) { fprintf(stderr, " %3d", *array++); } if (nz > 1) fprintf(stderr, "\n"); } fprintf(stderr, "\n"); } } /*------------------------------------------------------------------------- * Function: new_object * * Purpose: Creates a new object that refers to a indexed storage of raw * data. No raw data is stored. * * Return: Success: ID of dataset * * Failure: -1 * *------------------------------------------------------------------------- */ static hid_t new_object(hid_t f, const char *name, int ndims, hsize_t dims[], hsize_t cdims[]) { hid_t dataset; /* Dataset ID */ hid_t space; /* Dataspace ID */ hid_t dcpl; /* Dataset creation property list ID */ /* Create the dataset creation property list */ if ((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) TEST_ERROR; /* Set the chunk dimensions */ if (H5Pset_chunk(dcpl, ndims, cdims) < 0) TEST_ERROR; /* Create the dataspace */ if ((space = H5Screate_simple(ndims, dims, NULL)) < 0) TEST_ERROR; /* Create the dataset */ if ((dataset = H5Dcreate2(f, name, TEST_DATATYPE, space, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) TEST_ERROR; /* Clean up */ /* Close property lists */ if (H5Pclose(dcpl) < 0) TEST_ERROR; /* Close dataspace */ if (H5Sclose(space) < 0) TEST_ERROR; return dataset; error: return -1; } /*------------------------------------------------------------------------- * Function: test_create * * Purpose: Creates a named object that refers to indexed storage of raw * data. No raw data is stored. * * Return: Success: SUCCEED * * Failure: FAIL * *------------------------------------------------------------------------- */ static herr_t test_create(hid_t f, const char *prefix) { hid_t dataset; /* Dataset ID */ hsize_t dims[H5O_LAYOUT_NDIMS + 1]; /* Dimensions of dataset */ hsize_t my_chunk_dims[H5O_LAYOUT_NDIMS + 1]; /* Dimensions of chunks */ char name[256]; /* Dataset name */ unsigned u; /* Local index variable */ TESTING("istore create"); dims[0] = my_chunk_dims[0] = 1; for (u = 1; u <= H5S_MAX_RANK; u++) { /* Initialize the dimension size in this new dimension */ dims[u] = my_chunk_dims[u] = 2; /* Create chunked dataset of this dimensionality */ snprintf(name, sizeof name, "%s_%02u", prefix, u); if ((dataset = new_object(f, name, (int)u, dims, my_chunk_dims)) < 0) return FAIL; /* Close dataset created */ if (H5Dclose(dataset) < 0) return FAIL; } PASSED(); return SUCCEED; } /*------------------------------------------------------------------------- * Function: test_extend * * Purpose: Creates an empty object and then writes to it in such a way * as to always extend the object's domain without creating * holes and without causing the object to become concave. * * Return: Success: SUCCEED * * Failure: FAIL * *------------------------------------------------------------------------- */ static herr_t test_extend(hid_t f, const char *prefix, size_t nx, size_t ny, size_t nz) { hid_t dataset; /* Dataset ID */ hid_t fspace; /* Dataset's file dataspace */ hid_t mspace; /* Dataset's memory dataspace */ size_t i, j, k, ctr; int ndims; uint8_t *buf = NULL, *check = NULL, *whole = NULL; char dims[64], s[256], name[256]; hsize_t offset[3]; hsize_t max_corner[3]; hsize_t size[3]; hsize_t whole_size[3]; hsize_t nelmts; if (!nz) { if (!ny) { ndims = 1; ny = nz = 1; snprintf(dims, sizeof(dims), "%lu", (unsigned long)nx); } else { ndims = 2; nz = 1; snprintf(dims, sizeof(dims), "%lux%lu", (unsigned long)nx, (unsigned long)ny); } } else { ndims = 3; snprintf(dims, sizeof(dims), "%lux%lux%lu", (unsigned long)nx, (unsigned long)ny, (unsigned long)nz); } snprintf(s, sizeof(s), "istore extend: %s", dims); TESTING(s); buf = (uint8_t *)malloc(nx * ny * nz); check = (uint8_t *)malloc(nx * ny * nz); whole = (uint8_t *)calloc((size_t)1, nx * ny * nz); whole_size[0] = nx; whole_size[1] = ny; whole_size[2] = nz; max_corner[0] = 0; max_corner[1] = 0; max_corner[2] = 0; /* Build the new empty object */ snprintf(name, sizeof(name), "%s_%s", prefix, dims); if ((dataset = new_object(f, name, ndims, whole_size, whole_size)) < 0) { fprintf(stderr, " Cannot create %u-d object `%s'\n", ndims, name); goto error; } /* Get dataset's dataspace */ if ((fspace = H5Dget_space(dataset)) < 0) TEST_ERROR; for (ctr = 0; H5VM_vector_lt_u((unsigned)ndims, max_corner, whole_size); ctr++) { /* Size and location */ if (0 == ctr) { offset[0] = offset[1] = offset[2] = 0; size[0] = size[1] = size[2] = 1; nelmts = 1; } else { for (i = 0, nelmts = 1; i < (size_t)ndims; i++) { if (ctr % (size_t)ndims == i) { offset[i] = max_corner[i]; size[i] = MIN(1, whole_size[i] - offset[i]); } else { offset[i] = 0; size[i] = max_corner[i]; } nelmts *= size[i]; } } /* Fill the source array */ if (0 == nelmts) continue; memset(buf, (signed)(128 + ctr), (size_t)nelmts); /* Create dataspace for selection in memory */ if ((mspace = H5Screate_simple(1, &nelmts, NULL)) < 0) TEST_ERROR; /* Select region in file dataspace */ if (H5Sselect_hyperslab(fspace, H5S_SELECT_SET, offset, NULL, size, NULL) < 0) TEST_ERROR; /* Write to disk */ if (H5Dwrite(dataset, TEST_DATATYPE, mspace, fspace, H5P_DEFAULT, buf) < 0) { H5_FAILED(); fprintf(stderr, " Write failed: ctr=%lu\n", (unsigned long)ctr); goto error; } /* Read from disk */ memset(check, 0xff, (size_t)nelmts); if (H5Dread(dataset, TEST_DATATYPE, mspace, fspace, H5P_DEFAULT, check) < 0) { H5_FAILED(); fprintf(stderr, " Read failed: ctr=%lu\n", (unsigned long)ctr); goto error; } if (memcmp(buf, check, (size_t)nelmts) != 0) { H5_FAILED(); fprintf(stderr, " Read check failed: ctr=%lu\n", (unsigned long)ctr); fprintf(stderr, " Wrote:\n"); print_array(buf, (size_t)size[0], (size_t)size[1], (size_t)size[2]); fprintf(stderr, " Read:\n"); print_array(check, (size_t)size[0], (size_t)size[1], (size_t)size[2]); goto error; } /* Close memory dataspace */ if (H5Sclose(mspace) < 0) TEST_ERROR; /* Write to `whole' buffer for later checking */ H5VM_hyper_copy((unsigned)ndims, size, whole_size, offset, whole, /*dst*/ size, H5VM_ZERO, buf); /*src*/ /* Update max corner */ for (i = 0; i < (size_t)ndims; i++) max_corner[i] = MAX(max_corner[i], offset[i] + size[i]); } /* Now read the entire array back out and check it */ memset(buf, 0xff, nx * ny * nz); if (H5Dread(dataset, TEST_DATATYPE, H5S_ALL, H5S_ALL, H5P_DEFAULT, buf) < 0) { H5_FAILED(); fprintf(stderr, " Read failed for whole array.\n"); goto error; } for (i = 0; i < nx; i++) { for (j = 0; j < ny; j++) { for (k = 0; k < nz; k++) { if (whole[i * ny * nz + j * nz + k] != buf[i * ny * nz + j * nz + k]) { H5_FAILED(); fprintf(stderr, " Check failed at i=%lu", (unsigned long)i); if (ndims > 1) { fprintf(stderr, ", j=%lu", (unsigned long)j); } if (ndims > 2) { fprintf(stderr, ", k=%lu", (unsigned long)k); } fprintf(stderr, "\n Check array is:\n"); print_array(whole, nx, ny, nz); fprintf(stderr, " Value read is:\n"); print_array(buf, nx, ny, nz); goto error; } } } } /* Close dataset's dataspace */ if (H5Sclose(fspace) < 0) TEST_ERROR; /* Close dataset */ if (H5Dclose(dataset) < 0) TEST_ERROR; /* Free memory used */ free(buf); free(check); free(whole); PASSED(); return SUCCEED; error: free(buf); free(check); free(whole); return FAIL; } /*------------------------------------------------------------------------- * Function: test_sparse * * Purpose: Creates a sparse matrix consisting of NBLOCKS randomly placed * blocks each of size NX,NY,NZ. * * Return: Success: SUCCEED * * Failure: FAIL * *------------------------------------------------------------------------- */ static herr_t test_sparse(hid_t f, const char *prefix, size_t nblocks, size_t nx, size_t ny, size_t nz, int skip_test) { hid_t dataset; /* Dataset ID */ hid_t fspace; /* Dataset's file dataspace */ hid_t mspace; /* Dataset's memory dataspace */ int ndims; hsize_t ctr; char dims[64], s[256], name[256]; hsize_t offset[3]; hsize_t size[3]; uint8_t *buf = NULL; hsize_t whole_size[3]; /* Size of dataset's dataspace */ size_t u; /* Local index variable */ if (!nz) { if (!ny) { ndims = 1; ny = nz = 1; snprintf(dims, sizeof(dims), "%lu", (unsigned long)nx); } else { ndims = 2; nz = 1; snprintf(dims, sizeof(dims), "%lux%lu", (unsigned long)nx, (unsigned long)ny); } } else { ndims = 3; snprintf(dims, sizeof(dims), "%lux%lux%lu", (unsigned long)nx, (unsigned long)ny, (unsigned long)nz); } snprintf(s, sizeof(s), "istore sparse: %s", dims); TESTING(s); if (skip_test) { SKIPPED(); return SUCCEED; } buf = (uint8_t *)malloc(nx * ny * nz); memset(buf, 128, nx * ny * nz); /* Set dimensions of dataset */ for (u = 0; u < (size_t)ndims; u++) whole_size[u] = TEST_SPARSE_SIZE; /* Set dimensions of selection */ size[0] = nx; size[1] = ny; size[2] = nz; /* Build the new empty object */ snprintf(name, sizeof(name), "%s_%s", prefix, dims); if ((dataset = new_object(f, name, ndims, whole_size, chunk_dims)) < 0) { printf(" Cannot create %u-d object `%s'\n", ndims, name); goto error; } /* Get dataset's dataspace */ if ((fspace = H5Dget_space(dataset)) < 0) TEST_ERROR; /* Create dataspace for memory buffer */ if ((mspace = H5Screate_simple(ndims, size, NULL)) < 0) TEST_ERROR; for (ctr = 0; ctr < nblocks; ctr++) { offset[0] = (hsize_t)(rand() % (int)(TEST_SPARSE_SIZE - nx)); offset[1] = (hsize_t)(rand() % (int)(TEST_SPARSE_SIZE - ny)); offset[2] = (hsize_t)(rand() % (int)(TEST_SPARSE_SIZE - nz)); /* Select region in file dataspace */ if (H5Sselect_hyperslab(fspace, H5S_SELECT_SET, offset, NULL, size, NULL) < 0) TEST_ERROR; /* write to disk */ if (H5Dwrite(dataset, TEST_DATATYPE, mspace, fspace, H5P_DEFAULT, buf) < 0) { H5_FAILED(); printf(" Write failed: ctr=%lu\n", (unsigned long)ctr); printf(" offset=(%lu", (unsigned long)(offset[0])); if (ndims > 1) printf(",%lu", (unsigned long)(offset[1])); if (ndims > 2) printf(",%lu", (unsigned long)(offset[2])); printf("), size=(%lu", (unsigned long)(size[0])); if (ndims > 1) printf(",%lu", (unsigned long)(size[1])); if (ndims > 2) printf(",%lu", (unsigned long)(size[2])); printf(")\n"); goto error; } /* We don't test reading yet.... */ } /* Close memory dataspace */ if (H5Sclose(mspace) < 0) TEST_ERROR; /* Close dataset's dataspace */ if (H5Sclose(fspace) < 0) TEST_ERROR; /* Close dataset */ if (H5Dclose(dataset) < 0) TEST_ERROR; free(buf); PASSED(); return SUCCEED; error: free(buf); return FAIL; } /*------------------------------------------------------------------------- * Function: main * * Purpose: Tests indexed storage * * Return: EXIT_SUCCESS/EXIT_FAILURE * *------------------------------------------------------------------------- */ int main(int argc, char *argv[]) { hid_t fapl = H5I_INVALID_HID, file = H5I_INVALID_HID, fcpl = H5I_INVALID_HID; herr_t status; int nerrors = 0; unsigned size_of_test; unsigned u; /* Local index variable */ char filename[1024]; int skip_test = 0; int has_sparse_support = 0; /* Parse arguments or assume these tests (`small', `medium' ) */ if (1 == argc) { size_of_test = TEST_SMALL | TEST_MEDIUM | TEST_LARGE; } else { int i; for (i = 1, size_of_test = 0; i < argc; i++) { if (!strcmp(argv[i], "small")) { size_of_test |= TEST_SMALL; } else if (!strcmp(argv[i], "medium")) { size_of_test |= TEST_MEDIUM; } else if (!strcmp(argv[i], "large")) { size_of_test |= TEST_LARGE; } else { printf("unrecognized argument: %s\n", argv[i]); } } } printf("Test sizes: "); if (size_of_test & TEST_SMALL) printf(" SMALL"); if (size_of_test & TEST_MEDIUM) printf(" MEDIUM"); if (size_of_test & TEST_LARGE) printf(" LARGE"); printf("\n"); /* Set the random # seed */ srand((unsigned)time(NULL)); /* Check to see if the file system supports POSIX-style sparse files. * Windows NTFS does not, so we want to avoid tests which create * very large files. */ has_sparse_support = is_sparse(); /* Reset library */ h5_reset(); fapl = h5_fileaccess(); /* Use larger file addresses... */ fcpl = H5Pcreate(H5P_FILE_CREATE); H5Pset_sizes(fcpl, (size_t)8, (size_t)0); /* Create the test file */ h5_fixname(FILENAME[0], fapl, filename, sizeof filename); if ((file = H5Fcreate(filename, H5F_ACC_TRUNC, fcpl, fapl)) < 0) { printf("Cannot create file %s; test aborted\n", filename); exit(EXIT_FAILURE); } /* Initialize chunk dimensions */ for (u = 0; u < H5O_LAYOUT_NDIMS; u++) chunk_dims[u] = TEST_CHUNK_SIZE; /* * Creation test: Creates empty objects with various raw data sizes * and alignments. */ status = test_create(file, "create"); nerrors += status < 0 ? 1 : 0; if (size_of_test & TEST_SMALL) { status = test_extend(file, "extend", (size_t)10, (size_t)0, (size_t)0); nerrors += status < 0 ? 1 : 0; status = test_extend(file, "extend", (size_t)10, (size_t)10, (size_t)0); nerrors += status < 0 ? 1 : 0; status = test_extend(file, "extend", (size_t)10, (size_t)10, (size_t)10); nerrors += status < 0 ? 1 : 0; } if (size_of_test & TEST_MEDIUM) { status = test_extend(file, "extend", (size_t)10000, (size_t)0, (size_t)0); nerrors += status < 0 ? 1 : 0; status = test_extend(file, "extend", (size_t)2500, (size_t)10, (size_t)0); nerrors += status < 0 ? 1 : 0; status = test_extend(file, "extend", (size_t)10, (size_t)400, (size_t)10); nerrors += status < 0 ? 1 : 0; } skip_test = 0; if (size_of_test & TEST_SMALL) { status = test_sparse(file, "sparse", (size_t)100, (size_t)5, (size_t)0, (size_t)0, skip_test); nerrors += status < 0 ? 1 : 0; status = test_sparse(file, "sparse", (size_t)100, (size_t)3, (size_t)4, (size_t)0, skip_test); nerrors += status < 0 ? 1 : 0; status = test_sparse(file, "sparse", (size_t)100, (size_t)2, (size_t)3, (size_t)4, skip_test); nerrors += status < 0 ? 1 : 0; } if (size_of_test & TEST_MEDIUM) { status = test_sparse(file, "sparse", (size_t)1000, (size_t)30, (size_t)0, (size_t)0, skip_test); nerrors += status < 0 ? 1 : 0; status = test_sparse(file, "sparse", (size_t)2000, (size_t)7, (size_t)3, (size_t)0, skip_test); nerrors += status < 0 ? 1 : 0; status = test_sparse(file, "sparse", (size_t)2000, (size_t)4, (size_t)2, (size_t)3, skip_test); nerrors += status < 0 ? 1 : 0; } skip_test = !has_sparse_support; if (size_of_test & TEST_LARGE) { /* This test is skipped if there is no POSIX-style sparse file support * e.g.: Windows NTFS filesystems */ status = test_sparse(file, "sparse", (size_t)800, (size_t)50, (size_t)50, (size_t)50, skip_test); if (skip_test) printf(" The current VFD does not support sparse files on this platform.\n"); nerrors += status < 0 ? 1 : 0; } /* Close the test file and exit */ H5Pclose(fcpl); H5Fclose(file); /* Verify symbol table messages are cached */ nerrors += (h5_verify_cached_stabs(FILENAME, fapl) < 0 ? 1 : 0); if (nerrors) { printf("***** %d I-STORE TEST%s FAILED! *****\n", nerrors, 1 == nerrors ? "" : "S"); exit(EXIT_FAILURE); } printf("All i-store tests passed.\n"); h5_cleanup(FILENAME, fapl); exit(EXIT_SUCCESS); }