Commit Graph

18283 Commits

Author SHA1 Message Date
Binh-Minh Ribler
fa5d96dc5e Fixed division-by-zero issues
Description:
    Fixed HDFFV-10481 and HDFFV-10477, division by 0.
    Fixed another occurrence beside what were reported.
    Also, changed a local variable to avoid an unnecessary cast.
Platforms tested:
    Linux/64 (jelly)
    Linux/32 (jam)
    Darwin (osx1010test)
2018-07-15 23:31:09 -05:00
Binh-Minh Ribler
ec31438afd Fixed HDFFV-10404
Description:
    Applied the typo fixes from user's report.
    The previous pull request couldn't be merged because it was too old,
    and it was too complicated for me to resolve conflicts.
Platform tested:
    Linux/64 (jelly) - very minor
2018-07-13 13:40:22 -05:00
Allen Byrne
f1beebe80d Merge pull request #1125 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '8f652a87ca4b77779c4e338d255b4a5217b76227':
  HDFFV-10519 add JNI note
  Add actual file names fo diff
2018-07-12 16:21:14 -05:00
Larry Knox
3d08f00101 Merge pull request #1130 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '08a8202eda7a79495a6d48f6be2c0b114e11750f':
  Vailin's fix for H5open fail when file doesn't have write permissions for user in test_misc33().  The test file can be opened read-only because the test doesn't write to it.
2018-07-12 15:26:42 -05:00
Larry Knox
08a8202eda Vailin's fix for H5open fail when file doesn't have write permissions
for user in test_misc33().  The test file can be
opened read-only because the test doesn't write to it.
2018-07-12 14:31:02 -05:00
Allen Byrne
8f652a87ca HDFFV-10519 add JNI note 2018-07-02 09:13:31 -05:00
Allen Byrne
3c07f4738f Add actual file names fo diff 2018-06-29 13:05:15 -05:00
Allen Byrne
b6fcbf4bb0 Merge pull request #1123 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'b1f5c9e9d63e16d67089f08ef2becc5119592a76':
  Fix ptr arith
  Correct function call
  Remove writeVL option
  Region reference in compounds need class check
  Correct cast formatting
  Correct var name
  Need to cast from void ptr
  Update Java util lib, Refactor H5D write VL to match read
2018-06-29 11:17:28 -05:00
Allen Byrne
b1f5c9e9d6 Fix ptr arith 2018-06-29 09:40:34 -05:00
Allen Byrne
2f53075ea9 Correct function call 2018-06-28 16:49:11 -05:00
Allen Byrne
e2d2a410d0 Remove writeVL option 2018-06-28 15:27:08 -05:00
Allen Byrne
5a1d298669 Region reference in compounds need class check 2018-06-28 14:22:50 -05:00
Allen Byrne
c3e666e4b2 Correct cast formatting 2018-06-28 11:33:25 -05:00
Allen Byrne
574941c50d Correct var name 2018-06-28 11:02:40 -05:00
Allen Byrne
f4b8365b32 Need to cast from void ptr 2018-06-28 10:42:02 -05:00
Allen Byrne
792771d52a Update Java util lib, Refactor H5D write VL to match read 2018-06-27 17:53:47 -05:00
Allen Byrne
4095b9260d Merge pull request #1120 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '4c1e89fba31abb357a05044c3f6a92450dfb753c':
  Fix attribute Read
2018-06-26 09:03:14 -05:00
Allen Byrne
4c1e89fba3 Fix attribute Read 2018-06-25 17:08:35 -05:00
Allen Byrne
71fac28803 Merge pull request #1119 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'c7b7c109aba0bce3c8180041a983245944d00c46':
  Correct "," handling
2018-06-25 10:55:29 -05:00
Allen Byrne
c7b7c109ab Correct "," handling 2018-06-25 10:46:14 -05:00
Allen Byrne
2b1be811e7 Merge pull request #1115 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '27047165aaa6838c4653daa56a41d7b64b6bf3cd':
  Remove debug statements
  Split/fix utility for vl types
  fix whitespace
  HDFVIEW compound vlen needed vlen_t size
2018-06-25 08:12:36 -05:00
hdftest
bac6bc52d3 Merge pull request #1117 in HDFFV/hdf5 from ~HDFTEST/hdf5_hft:develop to develop
* commit 'b193bc11c966d79b76ebc3bbe76728f0693693ef':
  Revert "Merge pull request #1116 in HDFFV/hdf5 from ~HDFTEST/hdf5_hft:hdf5_1_10 to develop"
2018-06-24 18:26:17 -05:00
hdftest
b193bc11c9 Revert "Merge pull request #1116 in HDFFV/hdf5 from ~HDFTEST/hdf5_hft:hdf5_1_10 to develop"
This reverts commit e9f476dad4, reversing
changes made to 2ff00b1b93.
2018-06-24 18:04:23 -05:00
hdftest
e9f476dad4 Merge pull request #1116 in HDFFV/hdf5 from ~HDFTEST/hdf5_hft:hdf5_1_10 to develop
* commit '25f80cbbec3a7d8036325784168b029cb71cc813': (324 commits)
  Snapshot version 1.10 release 3 (snap3)
  Update document
  HDFFV-10433 Updated text to address issues raised.
  Snapshot version 1.10 release 3 (snap2)
  Updated version to 1.10.3-snap2
  Merge corrections from develop
  HDFFV-10473 add note for attribute fix
  Correct attribute location
  HDFFV-9739 and cmake improvements merge from develop
  Fix for HDFFV-10469: set to latest format for virtual layout encoding.
  Update Windows test machines
  Fix soversion
  Fixed libver bounds underscore issue
  removed extraneous lib. ver. bound, PR comment
  temporary fix for HDFFV-10469
  Updated version to 1.10.3-snap1
  Add new file
  Correct number of tests
  Whitespace and test reclassify merge from develop
  HDFFV-10444 fix so numbers and merge java test changes
  ...
2018-06-24 17:37:20 -05:00
hdftest
25f80cbbec Snapshot version 1.10 release 3 (snap3) 2018-06-24 17:35:05 -05:00
Allen Byrne
27047165aa Remove debug statements 2018-06-21 16:52:07 -05:00
Allen Byrne
4e3b33e4ae Split/fix utility for vl types 2018-06-21 16:43:32 -05:00
Allen Byrne
3f47c38868 fix whitespace 2018-06-21 11:34:13 -05:00
Allen Byrne
651b728a62 HDFVIEW compound vlen needed vlen_t size 2018-06-20 16:06:18 -05:00
Allen Byrne
5c2699fe51 Merge pull request #1110 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10
* commit 'd5e78d2ecfd19e8e912cce654462ccc6e853fb72':
  Update document
  HDFFV-10433 Updated text to address issues raised.
  Merge corrections from develop
2018-06-19 10:06:54 -05:00
Allen Byrne
2ff00b1b93 Merge pull request #1109 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '5f2700f256b981f555a6a6b4b2caa61fa184554b':
  Update documents
  Update document
  HDFFV-10433 Update file with fix for issues
2018-06-19 10:06:33 -05:00
Allen Byrne
5f2700f256 Update documents 2018-06-19 10:04:49 -05:00
Allen Byrne
fd20f7c0bb Update document 2018-06-19 09:52:19 -05:00
Allen Byrne
d5e78d2ecf Update document 2018-06-19 09:51:49 -05:00
hdftest
64a22d4965 Merge pull request #1113 in HDFFV/hdf5 from ~HDFTEST/hdf5_hft:hdf5_1_10 to hdf5_1_10
Update version to snap3

* commit '67d6f8d405b16c99590f112f429a352157be3554':
  Snapshot version 1.10 release 3 (snap2)
2018-06-16 17:52:04 -05:00
hdftest
67d6f8d405 Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)
* commit '87829e06189cd9b29583b5ca8065b52b1f4cd523': (30 commits)
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  Cleaned up H5Fmount/unmount code.
  Normalization with vol_integration branch.
  Add fortran MPI to test and example
  Add mpi include folders for fortran C objects
  Normalization with the vol_integration branch.
  Fixed MANIFEST
  Fix usage of compression lib in shared tests
  Fix jni function call version
  Fix the error found after earlier checkin.
  H5O_info fixes for java and examples
  Added a RELASE.txt entry for HDFFV-10505.
  Changed 'deprecated' to indicate 'no longer supported' in the --enable-debug/production configure flags.
  (1) Made the change according to the pull request feedback. (2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463.
  Normalize with vol_integration.
  Removed unused H5MF functions and updated FUNC_ENTER macros and naming in H5MFsection.c.
  Restored some unused #defines to the deprecated section of H5Dpublic.h.
  Changes made based on feedback from pull request #1039.
  ...
2018-06-16 17:47:39 -05:00
Scot Breitenfeld
87829e0618 Merge pull request #1111 in HDFFV/hdf5 from hdf5_1_10.sync to hdf5_1_10
* commit '57f64b92d19fed2879ee9bafe1d29bfac865d54c': (30 commits)
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  Cleaned up H5Fmount/unmount code.
  Normalization with vol_integration branch.
  Add fortran MPI to test and example
  Add mpi include folders for fortran C objects
  Normalization with the vol_integration branch.
  Fixed MANIFEST
  Fix usage of compression lib in shared tests
  Fix jni function call version
  Fix the error found after earlier checkin.
  H5O_info fixes for java and examples
  Added a RELASE.txt entry for HDFFV-10505.
  Changed 'deprecated' to indicate 'no longer supported' in the --enable-debug/production configure flags.
  (1) Made the change according to the pull request feedback. (2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463.
  Normalize with vol_integration.
  Removed unused H5MF functions and updated FUNC_ENTER macros and naming in H5MFsection.c.
  Restored some unused #defines to the deprecated section of H5Dpublic.h.
  Changes made based on feedback from pull request #1039.
  ...
2018-06-15 13:53:36 -05:00
M. Scot Breitenfeld
57f64b92d1 Merge branch 'develop' into hdf5_1_10.sync 2018-06-14 09:17:06 -05:00
Dana Robinson
f62969a76a Merge pull request #1101 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:vi_develop_normalize to develop
* commit '18fbdebb977d7a4dbaa99ec6b153a49e3b4883d5':
  Cleaned up H5Fmount/unmount code.
  Normalization with vol_integration branch.
  Normalization with the vol_integration branch.
2018-06-13 14:21:36 -05:00
M. Scot Breitenfeld
88b690c08c Merge branch 'develop' into hdf5_1_10.sync 2018-06-12 10:19:25 -05:00
Allen Byrne
c923219a26 HDFFV-10433 Update file with fix for issues 2018-06-11 14:34:28 -05:00
Allen Byrne
eb9f86e38a HDFFV-10433 Updated text to address issues raised. 2018-06-11 14:32:41 -05:00
Scot Breitenfeld
7bebe91ccf Merge pull request #1108 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to develop
* commit 'fe325fb554eddceccfa1674d804d5c7aed846bde':
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
  HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
2018-06-11 09:36:15 -05:00
M. Scot Breitenfeld
cc2154c13c Merge branch 'develop' into hdf5_1_10.sync 2018-06-08 15:42:31 -05:00
M. Scot Breitenfeld
fe325fb554 HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
misc. clean-up
2018-06-08 14:45:23 -05:00
M. Scot Breitenfeld
e6aa306354 HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
added dependency on H5ff.F90 for H5_ff.F90
2018-06-08 14:38:22 -05:00
M. Scot Breitenfeld
c52d04320b HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
h5fget_obj_count_f with H5F_OBJ_ALL_F counted objects created in h5open_f, which should not be included in the count. The function now returns the correct number of objects (i.e., objects created in h5open are not included in the total).
2018-06-08 14:19:11 -05:00
Dana Robinson
18fbdebb97 Cleaned up H5Fmount/unmount code. 2018-06-06 23:08:29 -07:00
Dana Robinson
91089de53f Normalization with vol_integration branch. 2018-06-06 21:34:11 -07:00
Scot Breitenfeld
e87be2e9e7 Merge pull request #1103 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit 'df64de9eedea0cb7796f37f9c141d81c636742c7':
  Add fortran MPI to test and example
2018-06-06 13:46:14 -05:00