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Author SHA1 Message Date
Dana Robinson
f81103e89e Merge pull request #1482 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:valgrind_fixes to develop 
* commit 'a4e63bb98072868a145c45e8247280ebc86c3a6d':
  Fixed a memory issue flagged by valgrind in the direct_chunk test.
 2019-01-18 10:40:44 -06:00
Dana Robinson
a4e63bb980 Fixed a memory issue flagged by valgrind in the direct_chunk test. 2019-01-16 21:37:07 -08:00
Quincey Koziol
ab0fa80994 Merge pull request #1481 in HDFFV/hdf5 from reduce_cache_image_num_groups to develop 
* commit '47fb7c2ee6541bb006e76c34966102ebbdaec587':
  Update usage for FAPLs, and reduce # of groups for smoke checks
 2019-01-16 11:27:53 -06:00
Quincey Koziol
47fb7c2ee6 Update usage for FAPLs, and reduce # of groups for smoke checks 2019-01-16 10:36:25 -06:00
Allen Byrne
5fdc01ae99 Merge pull request #1476 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit 'fe5650727c55e44e2605b667ac35f74993834643':
  Correct fix for new policy
  Fix for new policy
 2019-01-14 13:54:39 -06:00
Allen Byrne
fe5650727c Correct fix for new policy 2019-01-14 13:11:17 -06:00
Allen Byrne
a7aaf073d2 Fix for new policy 2019-01-14 12:13:03 -06:00
Quincey Koziol
703acba51f Merge pull request #1471 in HDFFV/hdf5 from fix_daily_test_on_platypus to develop 
* commit '3a31d37abb1fe390d4e28502e7de3ad6da092970':
  Work around compiler fussiness on platypus.
 2019-01-11 19:31:48 -06:00
Quincey Koziol
3a31d37abb Work around compiler fussiness on platypus. 2019-01-11 10:11:31 -06:00
Quincey Koziol
ef3c3970fb Merge pull request #1468 in HDFFV/hdf5 from merge_hyperslab_updates_02 to develop 
* commit '4729d04d9123e8cd6b2bba071695ace7ddd2a7b5':
  Delta reduction against hyperslab_updates branch.
 2019-01-11 09:58:46 -06:00
Quincey Koziol
4729d04d91 Delta reduction against hyperslab_updates branch. 2019-01-10 23:08:51 -06:00
Dana Robinson
b9c8ddbfcc Merge pull request #1465 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to develop 
* commit 'b82ced10619731125b9db7b1ac36f3844463df9a':
  Fix for Fortran failures.
 2019-01-10 20:39:29 -06:00
Dana Robinson
b82ced1061 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~derobins/hdf5_der into develop 2019-01-10 19:43:43 -06:00
Dana Robinson
8522539a9e Fix for Fortran failures. 2019-01-10 19:43:17 -06:00
Quincey Koziol
0843353176 Merge pull request #1464 in HDFFV/hdf5 from vol_wrapping_apis to develop 
* commit '6d897f3c10241cbc50a728870d58269d15e36984':
  Add API routines to wrap and retrieve objects
 2019-01-10 18:29:26 -06:00
Quincey Koziol
6d897f3c10 Add API routines to wrap and retrieve objects 2019-01-10 18:00:13 -06:00
Allen Byrne
a7e0ef996a Merge pull request #1462 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit '9b0281736ca488387afd8a301e36e6f5a5315c4a':
  Fix deprecated H5Pget_version
  Fix regex
 2019-01-09 13:18:11 -06:00
Allen Byrne
9b0281736c Fix deprecated H5Pget_version 2019-01-09 12:55:31 -06:00
Allen Byrne
7b39e544c0 Fix regex 2019-01-09 12:05:40 -06:00
Scot Breitenfeld
f75d25707d Merge pull request #1461 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to develop 
* commit 'b3743a44238c284dc3817652271aa1475e3c4946':
  fixed 8 byte integer issue
  fix for xlf compiler
 2019-01-09 11:38:12 -06:00
M. Scot Breitenfeld
b3743a4423 fixed 8 byte integer issue 2019-01-09 11:21:56 -06:00
M. Scot Breitenfeld
8a8cb2fbb5 Merge branch 'develop' of ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into develop 2019-01-09 10:40:28 -06:00
M. Scot Breitenfeld
51d911a7f8 fix for xlf compiler 2019-01-09 10:40:18 -06:00
Dana Robinson
f41195ba8e Merge pull request #1460 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor_pr to develop 
* commit '287b5d03df03f9da5cf47f52e594f9909493d8ff':
  Fixed the MANIFEST
 2019-01-09 09:47:26 -06:00
Dana Robinson
287b5d03df Fixed the MANIFEST 2019-01-09 07:22:46 -08:00
Scot Breitenfeld
3e142c802d Merge pull request #1458 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to develop 
* commit '4f9ecd71e510a3835a49073fc16d3091a7fc25b2':
  replaced uint
  fix uint
 2019-01-08 23:07:30 -06:00
Scot Breitenfeld
4f9ecd71e5 replaced uint 2019-01-08 22:54:19 -06:00
Jordan Henderson
294d9c2847 Merge pull request #1455 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to develop 
* commit '2d7eb9a4c3a841f7612b88f6b559792cb6143930':
  Align behavior of H5Aget_name_by_idx with H5Aget_name when a NULL buffer is supplied
 2019-01-08 20:32:46 -06:00
Binh-Minh Ribler
56b32278c4 Merge pull request #1441 in HDFFV/hdf5 from ~BMRIBLER/hdf5_bmr_fixbug:develop to develop 
* commit '90d13bef33f9e2e80b23996a0c39f16f7c34ecf8':
  Fixed typo Platforms tested:     Darwin (osx1010test)
  Refixed HDFFV-10578 Description:     Applied Neil's fix for this issue after removing previous     attempt.  The resources are now released in init_objs() when     failure occurs there.     Neil will fix HDFFV-10676 separately. Platforms tested:     Linux/64 (jelly)     Linux/64 (platypus)     Darwin (osx1010test)
  Removed previous change in H5O__chunk_deserialize().
  Removed the previous change in H5O__chunk_deserialize()
  Removed previous change in table_list_add().
  Removed the previous change in table_list_add()
  Updated per review Description:     HDFFV-10676 - CVE-2018-13873         Changed the new assert to if statement, per Dana's comment. Platforms tested:     Linux/64 (jelly)
  HDFFV-10578 and HDFFV-10676 Description:     HDFFV-10578 - CVE-2018-17234         The file has some issue, however, there was a bug in h5dump that caused         memory leaks after the problem in the file was encountered. The bug         was that an if statement was missing in the function table_list_add()         resulting in the memory not being freed at a later time.         After the fix had been applied, there were no more leaks after h5dump         detected the issue in the file and reported the error.
 2019-01-08 18:59:22 -06:00
Ray Lu
44a67451be Merge pull request #1450 in HDFFV/hdf5 from ~SONGYULU/hdf5_ray:TRILAB-98-dt_arith-and-cpp_testhdf5-tests to develop 
* commit 'b02de315b93ac29d2483a91d526b110a25073505':
  NNSA Tri-LabsTRILAB-98: Another two test cases out.
  NNSA Tri-Labs TRILAB-98: Taking out a few more test cases.
  NNSA Tri-Labs TRILAB-98 dt_arith and cpp_testhdf5 tests fail on sierra.llnl.gov: According to the group decision, simply provide a macro to disable some failing test cases on sierra (IBM power9 cpu).  All failing cases involve long double data type.
 2019-01-08 17:59:03 -06:00
M. Scot Breitenfeld
69edf8522c Merge branch 'develop' of ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into develop 2019-01-08 17:31:32 -06:00
M. Scot Breitenfeld
9ea06b2e58 fix uint 2019-01-08 17:31:20 -06:00
Scot Breitenfeld
d3b107d1a4 Merge pull request #1456 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to develop 
* commit 'fb5d83e146679f4d0ca16cf54b410f04a262451e':
  Updated Fortran Bug and new features
 2019-01-08 17:03:06 -06:00
M. Scot Breitenfeld
fb5d83e146 Updated Fortran Bug and new features 2019-01-08 16:23:55 -06:00
Jordan Henderson
2d7eb9a4c3 Align behavior of H5Aget_name_by_idx with H5Aget_name when a NULL buffer is supplied 2019-01-08 15:52:30 -06:00
Allen Byrne
3f727a272c Merge pull request #1454 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit 'b88df58cc952563c35107daa1b8ced24b0cc03b5':
  Add missing define created in configure.ac
  Correct regex option
 2019-01-08 14:59:29 -06:00
Allen Byrne
b88df58cc9 Add missing define created in configure.ac 2019-01-08 14:31:46 -06:00
Songyu Lu
b02de315b9 NNSA Tri-LabsTRILAB-98: Another two test cases out. 2019-01-08 14:31:41 -06:00
Allen Byrne
25f272b4cb Correct regex option 2019-01-08 13:25:11 -06:00
Songyu Lu
2efc28cf63 NNSA Tri-Labs TRILAB-98: Taking out a few more test cases. 2019-01-08 12:45:01 -06:00
Jordan Henderson
206da2919d Merge pull request #1452 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to develop 
* commit '805b64685371982e9c7fd693497865197990cbd6':
  Fix for parallel filters tests with new read-proc0-broadcast feature
 2019-01-08 11:32:42 -06:00
Scot Breitenfeld
9b6fe52bcf Merge pull request #1409 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:J10443 to develop 
* commit 'b4d4d371a03158c39f120b1bde6c4bd51f1b2eb6':
  HDFFV-10443: Add "field" parameter to H5Oinfo* and H5Ovisit* APIs.
  Added chunked dataset, H5S_ALL test
  typo
  typo
  updated defined constants
  Documented HDFFV-10652
  HDFFV-10652 Implemented a process-0 read and then broadcast for collective read of full datasets (H5S_ALL) by all the processes in the file communicator.
  Removed reason for breaking read-proc0-and-bcast
  switched to using CX instead of a global var.
  HDFFV-10652 Implemented a process-0 read and then broadcast for collective read of full datasets (H5S_ALL) by all the processes in the file communicator.
 2019-01-08 11:29:48 -06:00
Scot Breitenfeld
b4d4d371a0 HDFFV-10443: Add "field" parameter to H5Oinfo* and H5Ovisit* APIs. 2019-01-08 11:24:00 -06:00
Neil Fortner
7e50055920 Merge pull request #1453 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:develop to develop 
* commit '0dd2c29f284b1ec2a3c070d39805f657f44b216d':
  Remove H5O_BOGUS_INVALID_ID from H5O_msg_class_g initialization, since space for it was removed.
 2019-01-08 10:45:46 -06:00
Neil Fortner
0dd2c29f28 Merge branch 'develop' of ssh://bitbucket.hdfgroup.org:7999/~nfortne2/hdf5_naf into develop 2019-01-08 10:37:28 -06:00
Neil Fortner
214abbfd59 Remove H5O_BOGUS_INVALID_ID from H5O_msg_class_g initialization, since 
space for it was removed.
 2019-01-08 10:36:34 -06:00
Dana Robinson
c8c0cf9fa2 Merge pull request #1451 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:fortran_squash to develop 
* commit '905766fa3e51a470c02328a63d92182d4a8481bf':
  Fortran wrappers for dataset obj header minimization API calls.
 2019-01-08 10:14:26 -06:00
M. Scot Breitenfeld
1421059cfb Merge remote-tracking branch 'upstream/develop' into develop 2019-01-08 09:55:29 -06:00
Jordan Henderson
805b646853 Fix for parallel filters tests with new read-proc0-broadcast feature 2019-01-08 09:45:35 -06:00
Dana Robinson
905766fa3e Fortran wrappers for dataset obj header minimization API calls. 2019-01-08 07:34:58 -08:00