Commit Graph

11287 Commits

Author SHA1 Message Date
Quincey Koziol
f4d4d427b2 [svn-r17461] Description:
Fix a few more problems when the user block is not aligned properly.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.8 (amazon) in debug mode
    Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-09-10 14:02:40 -05:00
Quincey Koziol
eaf4ee3eb9 [svn-r17459] Description:
Correct bad interaction between non-zero userblocks with non-zero
alignments.

    Also add some additional range checking and tests for invalid userblock
sizes.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.8 (amazon) in debug mode
    Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-09-08 15:15:37 -05:00
Allen Byrne
1cad9f4751 [svn-r17456] Added dataspace type check for region, changed dimension_break processing to use boolean.
Tested:
    local linux
2009-09-08 09:51:59 -05:00
Quincey Koziol
eae58095d0 [svn-r17455] Description:
Correct a 'hsize_t *' to 'hsize_t' and vice versa.

Tested on:
    Mac OS X/32 10.5.8 (amazon) in debug mode
    Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
    (too minor to require h5committest)
2009-09-08 08:03:38 -05:00
Albert Cheng
097ae3ae4b [svn-r17454] Bug fix. (Daily test failure).
Generic function name is used but that would fail when v16API is used.
Changed the H5Dcreate() and H5Acreate() to v18 names as H5Dcreate2() and H5Acreate2().

tested: jam (regular and --with-default-api-version=v16).
2009-09-07 02:51:08 -05:00
Allen Byrne
c1f98f4763 [svn-r17451] Added new features for h5dump in tools section. Moved h5dump bug fix to bug fixed section. 2009-09-04 15:38:40 -05:00
Allen Byrne
c7590ca38e [svn-r17450] Bring h5dump single subsetting selection and region reference changes from NPOESS
Tested: local linux smirom
2009-09-04 09:50:13 -05:00
Mike McGreevy
4978a681f9 [svn-r17447] Purpose:
Script Update

Description:

    Updated autoconf version in bin/chkconfigure script to 2.64
2009-09-03 13:38:25 -05:00
Larry Knox
458358f0bd [svn-r17446] Snapshot version 1.9 release 45 2009-09-03 13:02:46 -05:00
Mike McGreevy
49b638104c [svn-r17440] Purpose:
Add warning to configure

Description:

   Patched up the configure script to issue a warning when the user
   has supplied the --enable-static-exec flag on a system that libtool
   indicates does not support the -static linker flag.

Tested:

   jam, smirom, linew, liberty.
2009-08-31 11:21:56 -05:00
Quincey Koziol
f88607ed24 [svn-r17432] Description:
Simplify out dataspace cleanup code.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.8 (amazon) in debug mode
        Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-08-27 14:44:08 -05:00
Quincey Koziol
b1512c79e5 [svn-r17429] Description:
Bring work from "compress group's fractal heap" branch back to trunk:
reove unnecessary v2 B-tree 'retrieve' callback from v2 B-tree clients.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.8 (amazon) in debug mode
        Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-08-27 11:40:57 -05:00
Elena Pourmal
a66a20861d [svn-r17418] Maintenance: At some point the part of the file was lost; restored.
I am cheking in the file and then will test different scripts
             to make sure that they do not destroy the file. 
             (I've already tested bin/h5vers and bin/release in 1.8 ). 
             Similar check-in for 1.8 will follow.
2009-08-25 11:27:44 -05:00
Quincey Koziol
deaa1adff8 [svn-r17414] Description:
Flush the core VFD's buffer before closing the file, also flush the
metadata accumulator before reseting it.  Write the driver info message out
in the superblock flush routine more directly, instead of using wrapper
routine, since the wrapper routine won't work when the superblock is being
shutdown.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode, w/check-vfd
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode, w/check-vfd
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode, w/check-vfd
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode, w/check-vfd
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode, w/check-vfd
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode, w/check-vfd
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode, w/check-vfd
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode, w/check-vfd
        Mac OS X/32 10.5.8 (amazon) in debug mode, w/check-vfd
        Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode, w/check-vfd
2009-08-24 13:13:20 -05:00
Quincey Koziol
e3f4e81b5f [svn-r17413] Description:
Remove vestigial intermediate routine for flushing file and move it
into API routine.  Also, remove private, unused (now) 'H5F_FLUSH_DOWN' symbol
from public header file.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.8 (amazon) in debug mode
        Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-08-24 10:07:17 -05:00
Quincey Koziol
1a3c594abf [svn-r17412] Description:
Seperate 'flush' functionality from 'destroy' functionality at the
H5F level also.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.8 (amazon) in debug mode
        Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-08-23 20:45:16 -05:00
Quincey Koziol
fef5124981 [svn-r17411] Description:
Make H5AC_flush just flush the cache and make H5AC_dest perform the
proper parallel synchronization before destroying the cache.  Also, further
discriminate between 'closing' and 'non-closing' actions in H5F_flush.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.8 (amazon) in debug mode
        Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-08-23 19:50:39 -05:00
Quincey Koziol
02775c2349 [svn-r17408] Description:
Move flush operation on mounted file hierarchy into H5Fmount module.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.8 (amazon) in debug mode
        Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-08-21 17:25:13 -05:00
Raymond Lu
5c839af920 [svn-r17405] I added a condition check for the conversion from unsigned to float. When the configure
detects the conversion working, a macro is set.  If there's problem with this conversion like
Pathscale compiler, skip the test.

Tested on jam.  Need to verify it on pathscale machine.
2009-08-21 13:57:10 -05:00
Quincey Koziol
d591ac4bf7 [svn-r17403] Description:
Eliminate 'closing' flag to dataset flush routine, since all cached
dataset information has already been flushed when a file is closed and the
datasets themselves will be closed (and the dataset caches destroyed).

    Skip calling more flush routines when the file is closing, in preparation
for eventual separation of the 'flush' concept from the 'shutdown the cache'
concept.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.8 (amazon) in debug mode
    Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-08-20 23:54:31 -05:00
Quincey Koziol
055d727f3f [svn-r17402] Description:
Switch from using a 'flags' parameter to the flush routine(s), to just
using a single 'closing' boolean parameter, since that's all we're doing with
the flags anyway and this makes things more obvious.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.8 (amazon) in debug mode
    Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-08-20 23:26:15 -05:00
Quincey Koziol
95fc42d6f5 [svn-r17400] Description:
Refactor H5F_flush into two routines, one which handles the recursion/
iteration necessary to handle mounted files; and one which just handles the
flush operation for a single file.

    Also, remove H5F_FLUSH_INVALIDATE and switch all code to depend on
H5F_FLUSH_CLOSING.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.8 (amazon) in debug mode
    Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-08-20 18:24:36 -05:00
Quincey Koziol
ea5f97cf8f [svn-r17398] Description:
First set of changes to move VFD 'truncate' call out of H5F_flush and defer
it until the file is closed.

Tested on:
    FreeBSD/32 6.3 (duty) in debug mode
    FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
    Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
        in debug mode
    Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
        w/C++ & FORTRAN, in production mode
    Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
        w/szip filter, in production mode
    Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
        in production mode
    Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
    Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
    Mac OS X/32 10.5.8 (amazon) in debug mode
    Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
        in production mode
2009-08-20 15:30:35 -05:00
Raymond Lu
7b6f849286 [svn-r17397] Added a comment to explain what "dst" and "ans" are when errors happen.
Tested the change for v1.8 on jam - simple change.
2009-08-20 14:40:43 -05:00
Quincey Koziol
e6c9d34f58 [svn-r17394] Description:
Update release notes with note about fixing Bz#1473.
2009-08-20 14:17:51 -05:00
Quincey Koziol
75faf535a3 [svn-r17393] Description:
Bring back more changes from the file free space branch to the trunk.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.8 (amazon) in debug mode
        Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-08-20 13:45:55 -05:00
Raymond Lu
0b3b4351e7 [svn-r17392] I added a detection for the correctness of converting from unsigned long to float in the
configure.in.  The Pathscale compiler on Sandia's Linux machine misinterprets the values of 
unsigned long as negative during the conversion to float, when the first bit of unsigned long
is on.  

Tested on jam.  Need to test it on Sandia's machine.
2009-08-20 13:40:50 -05:00
Quincey Koziol
f8c63dd9dc [svn-r17388] Description:
Correct error in freespace test which was relying on free space section
to be valid after the library had taken ownership of it (and therefore could
free it).

	Also correct some checking for return values of H5FS internal routines

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.8 (amazon) in debug mode
        Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-08-19 20:38:33 -05:00
Raymond Lu
7b0b5ebf56 [svn-r17385] I corrected some paths.
Not tested yet.
2009-08-19 16:46:16 -05:00
Allen Byrne
709b497b97 [svn-r17382] Added UNC external links tests for windows only.
Tested: windows
2009-08-19 08:50:10 -05:00
Quincey Koziol
347c41995b [svn-r17376] Description:
Make similar change to windows VFD as sec2 VFD, when converting from
a family file to a single file.

	Tweak file sizes expected for parallel tests.

Tested on:
	tg-login3, w/parallel
	Windows (post facto)
2009-08-18 15:22:14 -05:00
Allen Byrne
cf421eaa74 [svn-r17373] Added new file to library project.
Also removed unused project settings. These were per file settings that should not be used unless a file needs them.

Tested: Windows
2009-08-18 09:56:54 -05:00
Allen Byrne
167af56bfd [svn-r17371] Added Windows version of HDsleep macro needed for a test in test/tfile.c.
Tested: windows
2009-08-17 15:11:49 -05:00
Allen Byrne
0ac57cc17b [svn-r17369] Added h5dump/h5ls display buffer resize fixed in tools library. 2009-08-17 09:19:59 -05:00
Quincey Koziol
173083e1a5 [svn-r17365] Description:
Final merge of changes from sblock_mdc branch back to trunk.  The superblock is now managed by the metadata cache.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.8 (amazon) in debug mode
        Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-08-15 01:26:08 -05:00
Mike McGreevy
ec7ca0dea2 [svn-r17357] Purpose:
Header Installation Fix

Description:

    Updated the bin/install-sh script with the copy from the new Automake 1.11
    distribution. This addresses the problem with Solaris only copying the
    first header file on the one-line command to the install directory.

Tested:

    Linew, Jam, Liberty, Smirom:
     - build, test, install, installcheck.
2009-08-13 15:19:17 -05:00
Quincey Koziol
7bcb57d578 [svn-r17351] Description:
Clean up code (to align w/future sblock_mdc branch changes), tweak
tests for [slightly] easier debugging, fix memory leak when copying chunked
datasets with I/O filters, fix memory leak of free space section when it was
exactly the right size to use for extending an existing block in the file.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
2009-08-13 12:09:55 -05:00
Raymond Lu
aa13114bb8 [svn-r17349] I added the simple test for h5jam and the build for h5repart.
I'm testing it now.
2009-08-13 10:58:47 -05:00
Mike McGreevy
4598a59f86 [svn-r17345] Purpose:
Updating autotools

Description:

    Installed new autotools and used them to reconfigure HDF5.

    - Automake upgraded to 1.11
    - Autoconf upgraded to 2.64
    - bin/reconfigure script edited to use new versions (on jam), and
      run to generate new configure script and Makefile.in's.
    - configure.in script edited to add "_cv_" to all AC_CACHE_VAL strings
      (in order to comply with new autoconf standard).
    
Tested:

    Tested on machines jam, smirom, liberty, linew.
    Tested w/ features c++, fortran, parallel.
    Tested w/ compilers gcc, pgcc, icc.

    Further testing via Daily Tests should catch any other outliers. Upon
    passing DT's, I'll propogate the new tools into 1.8, hdf4, et cetera.
2009-08-12 13:55:25 -05:00
Larry Knox
eb3fc461a4 [svn-r17343] Snapshot version 1.9 release 44 2009-08-12 08:27:39 -05:00
Quincey Koziol
a9032b25ba [svn-r17341] Description:
Tweaks to comments, to better align with changes on sblock_mdc branch

Tested on:
	Just eyeballed, only tweaks to comments
2009-08-11 23:06:18 -05:00
Quincey Koziol
7dc66a5685 [svn-r17336] Description:
Bring more changes from the file_free_space branch into the trunk.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.8 (amazon) in debug mode
        Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-08-11 20:39:05 -05:00
Peter Cao
1f34be9bba [svn-r17334] Add notes about bog fix (1563) 2009-08-11 18:14:40 -05:00
Quincey Koziol
68ecb148b2 [svn-r17331] Description:
Bring back more changes from file free space branch.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.8 (amazon) in debug mode
        Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-08-11 15:34:24 -05:00
Albert Cheng
eccec94aec [svn-r17328] Added the recognization of PathScale compilers. Also added the known
problem of PathScale MPI failure when accessing a Panasas file system.
2009-08-11 15:13:07 -05:00
Quincey Koziol
18b4e80764 [svn-r17324] Description:
Bring more improvements/changes back from file_free_space branch

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.8 (amazon) in debug mode
        Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-08-11 12:24:58 -05:00
Quincey Koziol
bcb872eaaa [svn-r17319] Description:
Bring more superblock manipulation & aggregator changes from file free
space branch.

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.8 (amazon) in debug mode
        Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-08-11 07:47:43 -05:00
Albert Cheng
da73cc2d02 [svn-r17318] Did some code cleanup.
t_file.c: replace the old variable, color, with a more meaningfule name of
    is_old.
t_mpi.c: use the official mpi_file_delete, instead of remove, to delete a file
    in MPI environment.

Tested: 
Only jam in parallel as changes are trivial.
2009-08-11 05:35:29 -05:00
Quincey Koziol
9d27b9765a [svn-r17313] Description:
Bring back various minor code cleanups from the file free space branch

Tested on:
        FreeBSD/32 6.3 (duty) in debug mode
        FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
        Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe,
                                in debug mode
        Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x,
                                w/C++ & FORTRAN, in production mode
        Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
                                w/szip filter, in production mode
        Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
                                in production mode
        Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
        Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
        Mac OS X/32 10.5.8 (amazon) in debug mode
        Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe,
                                in production mode
2009-08-10 12:08:27 -05:00
Quincey Koziol
61c693615a [svn-r17302] Description:
Correct errors on machines (like Windows) that don't have C99 named
initializer support.

Tested on:
    Mac OS X/32 10.5.7 (duty)
    Windows build (by Allen)
2009-08-04 17:55:02 -05:00