Commit Graph

1468 Commits

Author SHA1 Message Date
Quincey Koziol
6eabeabdaa Refactor infrastructure for setting FAPL information from environment
variables during testing, including connecting native, pass-through, and
dynamically loaded VOL connectors.   Also bring native and pass-through
VOL connectors into alignment, removing the "H5VLnative_private.h" header.
2018-11-28 17:38:03 -06:00
Quincey Koziol
3abf58dce0 Remove example VOL connector, since it's been superceded by the pass-through
VOL connector in the src subdirectory.
2018-11-28 10:38:52 -06:00
Quincey Koziol
238a207f2d Add pass-through VOL connector 2018-11-28 10:26:03 -06:00
Quincey Koziol
340b7a4fb8 Remove unused test for unimplemented routine. 2018-11-22 01:08:47 -06:00
Quincey Koziol
f9b625ef5d Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-11-21 23:13:04 -06:00
Larry Knox
7bf6e98bd9 Move wait_H5init.cmake up to config/cmake. 2018-11-20 12:09:14 -06:00
Larry Knox
8544aae3e8 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into develop 2018-11-20 11:58:27 -06:00
Quincey Koziol
d0d360ff2d Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-11-18 00:39:27 -06:00
Songyu Lu
4f5a52e595 HDFFV-10601: Adding the new hdf5/tools/test/perform/chunk_cache.c to MANIFEST. 2018-11-16 16:25:50 -06:00
Larry Knox
6cbd463d41 Add script and changes to wait for H5Tinit.c
Add more sample batch scripts, specifically for sbatch, not for knl
cross compile.
Don't run parallel tests when no parallel test script is configured in
HDF5options.cmake.
2018-11-14 11:19:28 -06:00
Quincey Koziol
deb75622ca Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-11-04 00:25:36 -05:00
Dana Robinson
99c1e577da Merge pull request #1313 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:vol_tweaks to develop
* commit 'ee12aff2ca89e92b99590f29096794a84c6bacdc':
  Removed a couple of extraneous commas from VOL example.
  Cleaned up VOL example.
  Updated MANIFEST file.
  Fixed VOL example to use a platform-independent format specifier for size_t.
2018-10-30 18:54:05 -05:00
Dana Robinson
ab9e964c3e Updated MANIFEST file. 2018-10-30 09:53:20 -07:00
Larry Knox
f031cc7b7a Add script to run tests with sbatch when not cross compiling.
Add new files to MANIFEST.
2018-10-29 16:17:10 -05:00
Dana Robinson
7db3ea76da Merge pull request #1305 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:cmake_tweaks to develop
* commit '62b92ddf4096d9b8f6235587ec16f34f6c6fa119':
  Makes the installed header files the same between the autotools and CMake.
2018-10-29 09:16:23 -05:00
Dana Robinson
62b92ddf40 Makes the installed header files the same between the autotools
and CMake.

* CMake will no longer install private generated headers and tools
  library headers.
* Several empty public header files (which represent internal packages)
  were removed. These were only installed by CMake.
* Autotools installs will install H5FDwindows.h.

Fixes HDFFV-10614.
2018-10-26 20:44:29 -07:00
Quincey Koziol
4a32895724 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into stackable_vol 2018-10-25 18:32:13 -05:00
Quincey Koziol
0df6e44a6e Squashed commit of private branch changes to support stackable VOL plugins.
modified:   test/dsets.c
2018-10-24 23:52:47 -05:00
Allen Byrne
096279caf7 HDFFV-10608 Move toolchain files into a subfolder 2018-10-22 16:08:52 -05:00
Dana Robinson
46c5b059f1 Split H5VLnative.h into public and private files and updated 2018-10-20 13:06:37 -07:00
Allen Byrne
7e00924d1b EED-258 Add modules uses toolchain files 2018-10-18 14:44:27 -05:00
Dana Robinson
e962df1591 VOL FEATURE 2018-10-10 08:10:15 -07:00
Allen Byrne
284cb8ffc0 TRILABS-21 Add intel compiler support 2018-10-04 10:42:44 -05:00
Dana Robinson
eb78fd8832 Develop normalization with vol_integration.
Mostly peripheral things like the tools and wrappers,
with just enough core library code to support that.
2018-09-18 22:57:37 -07:00
Jordan Henderson
556bfd498c Update MANIFEST file for new t_coll_md_read.c file
Remove old line from copyright notice
2018-08-27 08:56:17 -05:00
Allen Byrne
454b04176a Update cmake warnings to match the autotools files better 2018-08-16 15:45:31 -05:00
Allen Byrne
b14c8bdb1c Add test file with unwritten datasets 2018-07-24 12:00:07 -05:00
Binh-Minh Ribler
55a35a8273 Updated for C2Cppfunction_map.htm 2018-07-23 09:12:30 -05:00
Binh-Minh Ribler
09913e2f8e Added class DSetAccPropList
Description:
    - Added class DSetAccPropList for the dataset access property list.
    - Added wrapper for H5Dget_access_plist to class DataSet
        // Gets the access property list of this dataset.
        DSetAccPropList getAccessPlist() const;

    - Added wrappers for H5Pset_chunk_cache and H5Pget_chunk_cache to class
      DSetAccPropList
        // Sets the raw data chunk cache parameters.
        void setChunkCache(size_t rdcc_nslots, size_t rdcc_nbytes, double rdcc_w0)

        // Retrieves the raw data chunk cache parameters.
        void getChunkCache(size_t &rdcc_nslots, size_t &rdcc_nbytes, double &rdcc_w0)

    - Added two more arguments to H5Location::createDataSet:
        const DSetAccPropList& dapl = DSetAccPropList::DEFAULT
        const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT

    - Added one more argument to H5Location::openDataSet:
        const DSetAccPropList& dapl = DSetAccPropList::DEFAULT

Platforms tested:
    Linux/64 (jelly)
    Linux/32 (jam)
    Darwin (osx1010test)
2018-07-22 15:22:34 -05:00
Allen Byrne
47780cb4e0 TRILAB-31 Working locally 2018-07-16 13:01:53 -05:00
Vailin Choi
ef30425b1c Merge pull request #1129 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit '08de02c838c05993fea5febb9c320a679e7f841a':
  Changes based on feedback from pull request.
  Fix test_misc33() in test/tmisc.c Open the test file read-only so that it can be accessed for testing.
  Modifications made based on feedback from pull request.
  Fix for HDFFV-10333: 1) Check for valid object header version for a refcount messge 2) Check for invalid fill value size 3) Check for invalid dimension size in a layout message 4) Add --enable-error-stack option to h5stat 5) Add error checks to h5stat.c 6) Add tests to h5stat and h5dump
  Fix daily test failure.
2018-07-13 10:02:24 -05:00
Vailin Choi
d1f8ac3312 Modifications made based on feedback from pull request. 2018-07-11 16:02:51 -05:00
Allen Byrne
792771d52a Update Java util lib, Refactor H5D write VL to match read 2018-06-27 17:53:47 -05:00
Dana Robinson
512f1cac54 Fixed MANIFEST 2018-06-01 08:43:13 -07:00
Vailin Choi
be2fc7dcd1 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '2b0fb7e3f1f7da5b23d430702493ed4fb7f87166': (21 commits)
  HDFFV-9739 only executes H5E tests in production
  Remove link flag from compile command
  fix typo
  Add release note
  Correct attribute location
  HDFFV-9739 fix  copy testfiles command
  HDFFV-9739 remove obsolete test files
  HDFFV-9739 dup test file for concurrent tests
  HDFFV-9739 Fix autotools script
  HDFFV-9739 Change autotools test scripts
  Fix typo
  HDFFV-9739 Update test reference
  Update current windows test machines
  HDFFV-9739 Grab err number before API call
  HDFFV-9739 Add release note
  Adjust test names for concurrent tests
  Fix soversion
  HDFFV-9739 Fix copy name
  HDFFV-9739 factor out tests into separate JUnit
  Updated the threadsafety test to use error macros instead of asserts.
  ...
2018-05-23 14:27:05 -05:00
Allen Byrne
9d0dfc8485 HDFFV-9739 remove obsolete test files 2018-05-21 09:14:34 -05:00
Allen Byrne
427ac6041a HDFFV-9739 factor out tests into separate JUnit 2018-05-15 18:12:19 -05:00
Vailin Choi
ea66ac1e67 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'dcc66a4f157ace0858b788228550f3e104df3242': (35 commits)
  GGC requires attribute before function
  Correct COMPILE defs usage
  Add missing module_dir property
  Text cleanup
  Correct sentence punctuation.
  Add release note.
  Use set_property for MT flag
  Correct command usage
  Remove APPEND
  Fix typo
  Add missing test lib
  add missing folder to path
  Fix another command revert
  Missed a command revert
  Revert to old style for LINK_FLAGS gen expr not working
  LINK_FLAGS must be separate property sets
  Fix link flags syntax
  Revert refactor link flags
  refactor link flags to interface
  Refactor link flags
  ...
2018-05-14 11:20:03 -05:00
Allen Byrne
bc9a773b99 TRILABS-20 Fix fortran configure during fix of CXX configure 2018-04-24 17:22:55 -05:00
Vailin Choi
e6bc326ec0 Fix for HDFFV-10180 Performance issues with H5Oget_info. 2018-04-24 15:10:13 -05:00
Allen Byrne
9a8e1e1a7c Add missing file 2018-04-12 09:10:28 -05:00
Allen Byrne
057a4e7fd6 Fix Java test for DEBUG_APIS 2018-04-09 15:07:29 -05:00
Quincey Koziol
f38864920d Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into merge_func_enter_vol
Plus initial steps toward merging API context push into FUNC_ENTER_API* macros
2018-03-18 18:36:49 -05:00
Quincey Koziol
4a17aff408 Add API context interface and use it throughout the library. 2018-03-15 16:54:30 -05:00
Vailin Choi
a8afb3ab3b Merge pull request #931 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:develop to develop
* commit 'f08b8fa10e7bac5ae26e3b06f938d38ebb3f28e1':
  Enhancement to the tool h5clear (HDFFV-10360)
  Fix for HDFFV-10209 VDS SWMR test failure Free the object header when there are chksum retries.
2018-03-12 18:00:05 -05:00
Allen Byrne
2adf6c741f Remove obsolete files 2018-03-12 13:40:38 -05:00
Vailin Choi
f08b8fa10e Enhancement to the tool h5clear (HDFFV-10360) 2018-03-12 09:02:15 -05:00
Binh-Minh Ribler
7841653359 Updated MANIFEST for H5LcreatProp.[h,cpp] 2018-03-11 23:39:46 -05:00
Allen Byrne
3712738877 HDFFV-4359 Add C,HL,CXX files 2018-03-08 15:54:40 -06:00
Binh-Minh Ribler
e1721103c5 Merge pull request #901 in HDFFV/hdf5 from ~BMRIBLER/version_bounds_bmr:develop to develop
tests for version bounds.

* commit 'f05f9d4cffab5e008c67e19034c1b248e1b01b3c':
  Miscellaneous test fixes Description:     - dtypes.c: added the use of highest version of nested datatypes to       verify the datatype's version.     - miscellaneous typos Platforms tested:     Linux/64 (jelly)     Darwin (osx1010test)
  Added h5repack tests Description:     Added tests SUPERBLOCK and INVALIDBOUNDS, composed by ADB. Platforms tested:     Linux/64 (jelly) - cmake
  Added bounds_latest_latest.h5
  Misc improvement Description:     - Added test file for h5repack test VERIFY_INVALIDBOUNDS     - Updated MANIFEST     - Removed unnecessary header file in test     - Update h5repack script to copy the new file to the test location Platforms tested:     Linux/64 (jelly)     Darwin (osx1010test)
  Improving tests Description:     - Added test for version bounds with nested datatypes     - Added script for additional version bound test in h5repack     - Cleaned up tests for consistency     - Removed extra included header files Platforms tested:     Linux/64 (jelly)     Linux/64 (moohan)     Darwin (osx1010test)
2018-03-07 15:09:15 -06:00