Bring r29909 from revise_chunks to trunk:
Cleaned up "conflicts with C++ keyword" warnings.
Tested on:
MacOSX/64 10.11.5 (amazon) w/serial, parallel & production
(h5committest forthcoming)
- Cleaned up mixed tabs and spaces that mis-aligned brackets.
- Test functions now return hbool_t to match the global pass variable.
- Main now returns EXIT_SUCCESS/EXIT_FAILURE.
- The invalid_configs array is now allocated dynamically instead
of statically. This reduces the frame size, removing some
warnings and making it easier for platforms/compilers that
have frame size issues (e.g.: zOS).
Tested on: 64-bit Ubuntu Linux w/ gcc 5.3.1
Autotools serial
Minor rearrangements, to align with revise_chunks branch
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
(h5committest forthcoming)
Bring "file pointer patching" code & test from revise_chunks to trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
(h5committest forthcoming)
Bring 'none' chunk index from revise_chunks branch to trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd)
(h5committest forthcoming)
config/linux-gnulibc1 reapply filx for HDFFV-9439 which was partially removed, probably by merge from revise_chunks branch.
Tested with h5committest.new on kituo, ostrich, osx1010dev and platypus.
Close another FAPL in the test_missing_chunk() routine.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd)
(h5committest forthcoming)
Bring "single" chunk index from revise_chunks branch to trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production (w/check-vfd)
(h5committest forthcoming)
Close FAPL that was leaked in zero_dims test.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production, including check-vfd
(h5committest forthcoming)
Bring over more dataset tests from the revise_chunks branch.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
(h5committest forthcoming)
Correct chunk index computation for earrays and farrays, particularly when
copying datasets with H5Ocopy() and other operations (like H5Dget_storage_size)
that require iterating over all chunks.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial & parallel
(h5committest forthcoming)
Bring support for earray and v2 B-trees from revise_chunks branch to
trunk.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
(h5committest forthcoming)
Minor style cleanups, from revise_chunks branch
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel and production
(too minor to require h5committest)
Bring updated layout and EFL property comparisons and new "latest format"
flags from revise_chunks branch.
Tested on:
MacOSX/64 10.11.4 (amazon) w/serial, parallel & production
(h5committest forthcoming)
Corrects a problem where H5Dget_access_plist() returns a dapl that
does not contain all dapl fields.
Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
autotools serial
Svn revisions reverted: 29341, 29326
Branch features/h5check_version was created for further development.
Files changed
test/tcheck_version.c
test/testcheck_version.sh.in
src/H5public.h
src/H5.c
config/lt_vers.am
bin/h5vers
Tested with h5committest.new
bin/h5vers:
Changed to copy the shared lib version from lt_vers.am to H5public.h
(Thanks to Larry who made the changes.)
config/lt_vers.am:
cosmetic change, nothing material.
src/H5public.h:
Changed by bin/h5vers.
src/H5.c:
Changed H5check_version() to use shared library version for compatibility
checking.
test/tcheck_version.c:
test/testcheck_version.sh.in:
Changed to use shared library version numbers instead of the HDF5 library
version numbers for testing.
Tested: tested in Jam (C only), platypus and osx1010dev (enable fortran and C++).
external dataset storage path behavior.
This check-in fixes a bug in the original check-in where the
external path stored in the file struct was not copied on reopen
causing subsequent dataset operations to fail.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
autotools serial w/ fortran and C++
autotools parallel (MPICH 3.1.4) w/ fortran
replace functions like h5_clean_files() that also do things like
reset the error handler and close fapls.
Existing tests have not yet been updated to use these new
functions.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
autotools serial
r29069 and 72 (gheap cleanup)
r29041 and 43 (HDFFV-8740 external storage)
These cause problems in the daily tests. They will be
re-introduced when their respective problems have been
addressed.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
autotools serial (check-vfd) w/ Fortran and C++
autotools parallel w/ Fortran
CMake serial
- Fixed typo in Wsetenv().
- Changed HDoff_t back to off_t in test/external.c. The function signature is off_t so the types must match or you can get conversion errors.
Tested on 64-bit Windows 10 w/ VS 2015
for external dataset files set via H5Pset_external().
Resolves HDFFV-8740
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
autotools serial
This test is duplicated more comprehensively in the links.c file so
there is no need to copy it over.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
serial autotools
Buffers that will be written to disk will now always be cleared since
not doing this has huge security implications.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0, x86_64) gcc 5.2.1
serial autotools
parallel autotools (MPICH 3.1.4)
serial CMake
- remove H5AC_ind_dxpl_id and use only H5AC_dxpl_id everywhere instead.
- remove flush_me_collectively flag from cache entries
- add a collective sanity check (MPI_Barrier) for every HDF5 API routine that could possibly touch the file. This is trigerred when the environment variable H5_COLL_API_SANITY_CHECK is set to a non 0 digit.
tested on BB-8 with serial and parallel.
Switch filter plugin to use H5allocate_memory and H5free_memory instead of
malloc and free.
Tested on:
Linux/32 2.6.x (jam) w/serial
Linux/64 2.6.x (jam) w/serial
MacOSX/64 10.11.2 (amazon) w/serial & parallel
Bump the nunmber of v2 B-tree records for the random 4-level B-tree update
test by another 25,000 records.
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
(Too minor to require h5committest)
Clean up many mismatches between malloc/free and H5MM_malloc/H5MM_xfree
in the library and tests (and use of H5free_memory and H5Dvlen_reclaim). Also
make H5Ocopy use a private version of H5Lexists, which doesn't internally
throw (and suppress) errors when an object (or the path to it) isn't found in
the destination.
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
(h5committest forthcoming)
Bump number of records for level 4 B-tree test, so that it's more likely to
always get to level 4.
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
(h5committest forthcoming)
Add 'update' operation to v2 B-trees, which will insert a new record, or
modify an existing one, depending on if the record exists or not.
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
(h5committest forthcoming)
Bring r28708 from revise_chunks branch:
Fix earray, farray and btree2 use of incorrect file pointer when two files
are opened and used to access the data structure. Misc. minor code cleanups
as well.
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
h5committest forthcoming
Revisions to normalize revise chunks vs. trunk, plus push dataset metadata
changes into the cache immediately (instead of holding them within the dataset
data structures).
Tested on:
MacOSX/64 10.11.2 (amazon) w/serial & parallel
(h5committest not required on this branch)
Fix tests accordingly and fix misuse of hbool_t in various places
Fix initialization of H5Pgcpl/ocpl structs in property decoding routines
Tested on:
Linux/32 (jam)
Linux/64 (platypus)
Linux/PPC64 (ostrich)
MacOSX/64 10.11
r27860-27883
r27892-27916
Tested on: - h5committest
- jam (parallel) fails with an existing, unrelated MPI config error
- platypus fails with due to an existing, unrelated cmakehdf5 error
where it does not recognize --enable-fortran2003.
Normalization changes that wouldn't otherwise be necessary if the VDS branch
wasn't coming in shortly.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest forthcoming)
Clean up warnings and some normalization against trunk.
Tested:
McaOSX/64 10.10.5 (amazon) w/serial & parallel
(h5committest not required on this branch)
Close FAPL for external link test, to fix infinite loop closing the library.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial
(too minor to require h5committest)
Refactor property list code to "deep copy" properties in the correct way,
retraining the rest of the library to copy & release things correctly. This
cleans up another batch of memory leaks, etc. within the library.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
Linux/32 2.6.x (jam) w/serial & parallel
(h5committest forthcoming)
compatible between 32 and 64 bit systems.
Expand cross platform property list encode/decode testing.
Fix warning in H5P__fill_value_enc.
Tested: jam, koala, ostrich (h5committest), ummon
NOTES:
- Developers will have to run autogen.sh before building with the autotools.
- autogen.sh takes the -p option to mimic the old bin/reconfigure behavior.
- The generated error, overflow and version headers have been left in place.
- The generated H5LT parser code has also been left in place.
- There are no changes for CMake users at this time.
Tested on: h5committest
Merge in part of Neil's property list fixes: Fix a minor memory leak,
add some sanity checks, clean up the code a little, and verify that encoding/
decoding default versions of the property lists works correctly.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial
(Too minor to require h5committest)
Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.
This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.
Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros. (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)
Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.
Tested on:
MacOSX/64 10.10.5 (amazon) w/serial & parallel
Linux/64 3.10.x (kituo) w/serial & parallel
Linux/64 2.6.x (ostrich) w/serial
