Commit Graph

2388 Commits

Author SHA1 Message Date
Larry Knox
bf9b274e27 [svn-r23964] Corrected "continuous" layout to "contiguous in h5repack -h output and comment.
Jira issue HDFFV-8493.

No test - text only change.
2013-08-02 16:23:39 -05:00
Allen Byrne
7a96201ee1 [svn-r23960] HDFFV-8490: Reorder and group h5dump help text.
Tested: local linux
2013-08-01 09:42:30 -05:00
Allen Byrne
4e1695576c [svn-r23953] Update stream handling to allow binary mode - due to unjam fix.
Tested: local linux
2013-07-31 11:22:40 -05:00
Allen Byrne
ba181d404d [svn-r23952] Update unjam file handling to eliminate infinite loops and use binary mode.
Tested: windows
2013-07-31 11:10:33 -05:00
Peter Cao
5b6ae0b603 [svn-r23945] fixed HDFFV-8306
using file stream for output data
2013-07-30 14:23:24 -05:00
Allen Byrne
ad7624ada3 [svn-r23944] Move stream functions into tools lib.
Tested: local linux
2013-07-30 12:04:23 -05:00
Albert Cheng
3a316cfc63 [svn-r23917] Bug fix: HDFFV-8392
tools/h5diff/testh5diff.sh is run in every "make check", even after it
has passed in the previous run.
The error was in the previous change made to Makefile.am
when testh5diff.sh.in was created.  The mistake was in the
SCRIPT_DEPEND=h5diff$(EXEEXT) $(H5PDIFF) $(srcdir)/testh5diff.sh
$(srcdir)/testh5diff.sh no longer existed. It is now generated in the
current built directory from $(srcdir)/testh5diff.sh.in (which configure
takes care of).

I updated the dependance to
SCRIPT_DEPEND=h5diff$(EXEEXT) $(H5PDIFF) testh5diff.sh
and that fixes the error.

Reviewed: HDF5-149

Tested: h5committested.
2013-07-18 00:12:27 -05:00
Mohamad Chaarawi
dfcb3cebf1 [svn-r23862] Change printfs in perform output and h5dump to prevent overflow.
This fixes: https://jira.hdfgroup.uiuc.edu/browse/HDFFV-8450

Tested on Jam.
2013-07-03 11:12:32 -05:00
Allen Byrne
a4dc3ff34d [svn-r23830] HDFFV-8476: Add the optional arg to the help usage text.
Tested: local linux
2013-06-26 16:28:13 -05:00
Allen Byrne
308106c0e9 [svn-r23829] HDFFV-8134: allow exclusion of attributes. This implements the technique and creates a test. Help changes will be added after trunk tests pass the test cycle.
Tested: local linux
2013-06-26 16:04:20 -05:00
Albert Cheng
c2750822ff [svn-r23825] Bug HDFFV-8469: C++ comments in C code.
Found and removed two more "//" comments.

Tested: in Koala by
$ env CFLAGS="-ansi" ../hdf5/bin/buildhdf5 -fortran -cxx -config # enable fortran and cxx, configure only
$ make AM_CFLAGS=-ansi # compile all source file by setting HDF5 build CFLAGS as "-ansi" only
2013-06-26 01:25:44 -05:00
Allen Byrne
dd89c8e90f [svn-r23819] Change name of generated file in test to use the macro based removal line.
Tested: local linux
2013-06-25 09:06:28 -05:00
Allen Byrne
66490d45e1 [svn-r23811] Remove unused label 2013-06-24 15:01:24 -05:00
Allen Byrne
125e2a0a9d [svn-r23800] Added the HD prefix to the system functions used in the h5tools_str_replace function. 2013-06-20 17:02:17 -05:00
Allen Byrne
e71411f9cf [svn-r23799] HDFFV-8455: moved h5dump in order of subdirs under tools to in front of h5import.
Tested local linux: h5dump executed before h5import
2013-06-20 13:10:07 -05:00
Allen Byrne
74384b3c19 [svn-r23798] HDFFV-8465: dtd reference incorrect. Fixed loading of xml files with respect to XSD file.
Tested: local linux
2013-06-20 12:39:49 -05:00
Allen Byrne
60cce86d0e [svn-r23796] remove commented line with c++ style 2013-06-20 10:06:14 -05:00
Allen Byrne
feb14ea872 [svn-r23745] HDFFV-8461: Add Windows /MT support
This adds the UserMacros.cmake support needed.
2013-06-10 12:46:48 -05:00
Allen Byrne
f0a9b781f3 [svn-r23740] HDFFV-8447: subsetting broke data output file option.
Reviewed in H5T-59, tested local linux
2013-06-07 13:39:54 -05:00
Allen Byrne
fab67b684e [svn-r23733] HDFFV-8366: Patches tested by Larry using h5committest, it creates the intermediate testfiles folder first. 2013-06-05 08:36:45 -05:00
Quincey Koziol
d38fe20df6 [svn-r23695] Description:
Clean up warnings in H5Tconv.c (down to _only_ 9000 lines of output now!)

    Merge changes from Coverity branch back to trunk:

r20684:
Fix for coverity bug #1721 which was due to the fix for coverity bug #943.

r20685:
Use HDstrncpy. --gh

r20761:
Purpose: Fix valgrind issues

Description:
Free image_data and data as appropriate in test_image.

r20762:
Purpose: Fix coverity issue 600

Description:
Add check for return value of H5O_close in H5Ocopy.  Also cleaned up various
warnings.

r20763:
Purpose: Fix valgrind issues with h5stat

Description:
Modified h5stat to free "iter" before exit, and free "hand" before exit if
parse_command_line exits directly.

r20764:
fixed coverity issues:
69, 327, 614, 684, 685, 696, 697, 1681, 967, 826, 660, 80

r20765:
Fixed coverity bug 668

Pulled x * y * z multiply out of malloc operand into a separate n_elements variable to quiet integer overflow warning.

No actual integer overflow tests are performed since it's just a test program but I did add a check that n_elements is >= 1.

I also changed an error condition from doing its own close and returning -1 to "goto out;" like the rest of the program.

r20766:
Fixed coverity bug 667

Pulled x * y * z multiply out of malloc operand into a separate n_elements variable to quiet integer overflow warning.

No actual integer overflow tests are performed since it's just a test program.


Tested on:
    Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN
    (h5committest upcoming)
2013-05-11 10:59:48 -05:00
Dana Robinson
dd577725d1 [svn-r23572] Removed inappropriate executable properties from a few files. These are
often added by Windows text editors.

Tested on: jam (just tested to make sure it builds - no code changes)
2013-04-10 11:49:28 -05:00
Albert Cheng
6b00c16d2a [svn-r23555] Bug fix: HDFFV-8358
The previous change set exec_prefix, libdir and includedir to actual values.
That removed the option for user to hand edit just the first prefix=...
to make "everything" to work.
Changed h5redeploy to do this by default:
## Installation directories:						  ##
## prefix	architecture-independent files.				  ##
## exec_prefix	architecture-dependent files, default is <prefix>.	  ##
## libdir	libraries, default is <exec_prefix>/lib.		  ##
## includedir	header files, default is <prefix/include>.		  ##
############################################################################
This allows users to just change the first line of prefix=<...> and the
effect will change libdir and includedir too.

This was also try to accommodate the -prefix option of h5XX. Unfortunately,
after changing h5redeploy, I found out the h5XX code to support -prefix
actually does not provide the stated efffect. This will be fixed in the
release.

Tested: h5committested plus hand test.
2013-04-05 13:29:46 -05:00
Allen Byrne
70e0f8e200 [svn-r23548] Fix typo in macro end macro
Warning only.
2013-04-04 11:35:22 -05:00
Allen Byrne
f03301ce82 [svn-r23530] Moved test property into test macro.
Tested: local linux
2013-04-03 10:08:52 -05:00
Larry Knox
0b16cecb99 [svn-r23527] Revised usage to reflect change to use -shlib as default when no static libraries were built.
No test - text only revision of compile scripts.
2013-04-02 17:54:20 -05:00
Albert Cheng
913b88d15b [svn-r23497] Bug fix: HDFFV-8358
Change h5redeploy to change all 4 lines, prefix=..., exec_prefix=...,
libdir=..., and includedir=...  This way, it reset all 4 lines. Should work
for both version of h5cc created by configure or by rpm.

Tested: hand tested in jam.
2013-03-30 00:55:15 -05:00
Raymond Lu
6c974c824d [svn-r23495] ported revisions 23433:23494 from the trunk 2013-03-29 18:13:05 -05:00
Allen Byrne
dabebe412f [svn-r23447] Add new env var to prevent filter plugin loading
Tested: jam
2013-03-25 12:39:14 -05:00
Raymond Lu
865bf6bcb2 [svn-r23435] ported revisions 23346:23432 from the trunk 2013-03-22 17:29:55 -05:00
Raymond Lu
8ffd55478e [svn-r23432] I added a new macro HDF5_PLUGIN_PRELOAD to skip plugin loading during data reading.
Tested on koala and jam.
2013-03-22 16:39:53 -05:00
Larry Knox
99b1524474 [svn-r23431] Fix for HDFFV-8141.
Changes default value for USE_SHARED_LIB in compile scripts to yes when static is disabled.
Comments in scripts about the order of flag variables containing library paths was also corrected.

Tested with h5committest on duck, jam, koala, and ostrich in addition to specific testing for the 
compile script change.
2013-03-22 16:02:07 -05:00
Quincey Koziol
535456397c [svn-r23415] Description:
Avoid using fpclassify() for detecting zero/non-zero values.

Tested on:
    Mac OSX/64 10.8.3 (amazon) w/debug
2013-03-21 13:19:53 -05:00
Allen Byrne
e7ced517bc [svn-r23411] HDDFV-8322: Free allocations in command line parsing.
Tested: local linux
2013-03-21 09:04:50 -05:00
Jonathan Kim
e8955b876c [svn-r23407] Purpose:
HDFFV-8214 - h5repack failed converting small chunked dataset (size < 1K) to contiguous layout.

Description:
  h5repack failed converting small chunked dataset (size < 1K) to contiguous layout.
  The first case was when chunk dim is bigger than the dataset dim (at leat one), h5repack failed with displaying error stacks.
  The other case is when chunk dim is smaller than the dataset dim, h5repack failed to change layout.

    
Tested: 
    jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), emu (solaris-BE),fred (mac64-LE), Windows (32-LE cmake), cmake (jam)
2013-03-20 15:33:33 -05:00
Quincey Koziol
59dd5665a5 [svn-r23395] Description:
Bring Coverity changes from branch to trunk:

r20682:
fixed coverity:
76, 77, 635, 636, 1164, 1165, 1166, 1121, 1122, 1117, 1343

Tested on:
    Mac OSX/64 10.8.3 (amazon) w/C++ & FORTRAN
    (too minor to require h5committest)
2013-03-19 22:44:28 -05:00
Allen Byrne
8ad18f496a [svn-r23388] HDDFV-8322: Free allocations in parse_command_line function.
Tested: local linux
2013-03-19 15:51:14 -05:00
Allen Byrne
c1ddb82ac1 [svn-r23356] Correct target name 2013-03-15 10:28:32 -05:00
Allen Byrne
3a4c43cbd4 [svn-r23353] Correct target name 2013-03-15 10:26:14 -05:00
Raymond Lu
08359be858 [svn-r23347] ported revision 23248:23346 from the trunk 2013-03-13 17:34:23 -05:00
Allen Byrne
54574a282d [svn-r23314] Correct typo in DEPENDS 2013-02-25 11:41:09 -05:00
Allen Byrne
47af32527b [svn-r23310] Correct duplicate test command 2013-02-21 14:39:29 -05:00
Allen Byrne
e142838d1f [svn-r23308] HDFFV-8311: Correct test dependency
Tested: local linux
2013-02-21 10:47:51 -05:00
Allen Byrne
2c0357db80 [svn-r23307] HDFFV-8311: Correct test dependency
Remove h5ls references

Tested: local linux
2013-02-20 13:43:47 -05:00
Allen Byrne
8a92fbce85 [svn-r23306] HDFFV-8311: Correct test dependency
Tested: local linux
2013-02-20 11:42:11 -05:00
Allen Byrne
aff5c20a6a [svn-r23305] HDFFV-8257: szip still used even if headers are not found. Change configure to test the result of the CHECK HEADERS call before checking for the library.
Tested: local linux, h5committest
2013-02-18 15:56:21 -05:00
Jonathan Kim
dbad502865 [svn-r23304] Purpose:
HDFFV-7643 - h5diff - incorrect exit-code returns for extra attribute exist

Description:
   h5diff: Fixed to return correct exit code 1 when detect unique
   attribute. Prior to this fix, h5diff returned exit code 0 indicating 
   two files are identical.

Tested: 
    jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), fred (mac64-LE), emu (solaris-BE),  Windows (32-LE cmake), cmake (jam)
2013-02-18 14:46:03 -05:00
Allen Byrne
1eeac2048a [svn-r23289] HDFFV-8311: Correct test dependency
Tested: local linux
2013-02-15 16:46:45 -05:00
Allen Byrne
43189639fd [svn-r23286] HDFFV-8311: Correct test dependency
Tested: local linux
2013-02-15 14:35:21 -05:00
Allen Byrne
4149edf118 [svn-r23282] Add folder to outfile name 2013-02-14 15:32:15 -05:00