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Author SHA1 Message Date
Jerome Soumagne
ef6db167a8 H5R: fix encoding of references that are part of compound types 
Add corresponding test and some debug information
 2020-07-28 16:36:19 -05:00
Dana Robinson
b201a78b33 Merge pull request #2714 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:h5s_set_extent_none to develop 
* commit 'e4603ff8a171e82de6373ba6eddcf59d5eeab5aa':
  Updated the Java tests to deal with H5Sset_extent_none changes
  Fixed additional typos in tselect.c comments.
  Fixes typo in tselect.c
  Updates H5Sset_extent_none() to set H5S_NULL
 2020-07-28 11:29:04 -05:00
Dana Robinson
e4603ff8a1 Updated the Java tests to deal with H5Sset_extent_none changes 2020-07-28 08:28:38 -07:00
Allen Byrne
10e59f6ba4 Merge pull request #2697 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit '5857bb817019b8513f796c9564de3f1845f9a44a':
  Only one line needed to compare
  Revert err file
  revert error-stack enable
  Add release notes for tools
  add test file ext
  Correct file name in test
  Tools refactor
 2020-07-28 07:13:18 -05:00
Dana Robinson
c78326eb92 Fixed additional typos in tselect.c comments. 2020-07-27 17:40:25 -07:00
Dana Robinson
dbba42c306 Fixes typo in tselect.c 2020-07-27 17:38:41 -07:00
Dana Robinson
91f5320ff0 Updates H5Sset_extent_none() to set H5S_NULL 
The API call used to set the internal H5S_NO_CLASS value which
produced errors when such a dataspace was passed to many other API
calls.

Fixes HDFFV-11027
 2020-07-27 17:32:01 -07:00
Allen Byrne
5857bb8170 Only one line needed to compare 2020-07-27 16:15:50 -05:00
Allen Byrne
799f2891c2 Revert err file 2020-07-27 15:47:10 -05:00
Allen Byrne
e0b86594c2 revert error-stack enable 2020-07-20 16:46:49 -05:00
Allen Byrne
c0bc9d0e60 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit '74e09473c825610d203565e5ed9deb156256d6ea':
  Minor normalization with 1.10.
 2020-07-20 14:08:55 -05:00
Dana Robinson
74e09473c8 Merge pull request #2703 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor to develop 
* commit '242459231b40a88741cbc85df4272914b5d8bed3':
  Minor normalization with 1.10.
 2020-07-20 14:04:41 -05:00
Dana Robinson
242459231b Minor normalization with 1.10. 2020-07-20 11:50:10 -07:00
Allen Byrne
bae8107621 Add release notes for tools 2020-07-20 10:26:17 -05:00
Allen Byrne
a498b4ee79 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit '9d3ea366d4bf3278e8260f4d5cdcc88cb4b61c56':
  Update MANIFEST. Add new test to Cmake.
  Fix for jira issue HDFFV-11080: (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
 2020-07-17 14:39:25 -05:00
Vailin Choi
9d3ea366d4 Merge pull request #2693 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/HDFFV-11080-heap-use-after-free-by-the-call to develop 
* commit '3023b34272cc6ada84aebfa7441a6a55afa3621c':
  Update MANIFEST. Add new test to Cmake.
  Fix for jira issue HDFFV-11080: (1) Patch up the file pointer when reading attribute of variable length datatype (2) Test to verify the fix when doing multiple threads
 2020-07-17 14:27:12 -05:00
Allen Byrne
a2f2887675 add test file ext 2020-07-17 13:22:26 -05:00
Allen Byrne
93c3d7b2f3 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit 'e36047b9b9839d1fd0b4009b7066b8b50b95bc6d':
  Minor normalization with 1.10
 2020-07-17 10:40:49 -05:00
Dana Robinson
e36047b9b9 Merge pull request #2700 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor to develop 
* commit '6388a6750ff1dc476b8631d26cd1742730df9fe8':
  Minor normalization with 1.10
 2020-07-17 10:23:24 -05:00
Dana Robinson
6388a6750f Minor normalization with 1.10 2020-07-17 05:17:48 -07:00
vchoi
3023b34272 Update MANIFEST. 
Add new test to Cmake.
 2020-07-16 16:40:11 -05:00
Allen Byrne
247e2dc546 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit '58d37c2295044ad1a201d6671cdd67ae380b84f8':
  H5R: fix type conversion of references within vlen type
 2020-07-16 08:57:28 -05:00
Allen Byrne
e5145030a4 Correct file name in test 2020-07-16 08:31:48 -05:00
Jerome Soumagne
58d37c2295 Merge pull request #2694 in HDFFV/hdf5 from ~JSOUMAGNE/hdf5:fix_vlen_ref to develop 
* commit 'aa9d2bd9bcce7a1a53c9d9cf519df5401041bb74':
  H5R: fix type conversion of references within vlen type
 2020-07-15 21:02:14 -05:00
Jerome Soumagne
aa9d2bd9bc H5R: fix type conversion of references within vlen type 
Update trefer.c with vlen test case
 2020-07-15 21:00:36 -05:00
Allen Byrne
bac0fc6309 Tools refactor 
Move error_stack setup to tools library
Add structure for h5dump properties
Eliminate duplicated h5diff functions
Use properties structure in place of argument lists.
 2020-07-15 11:20:16 -05:00
Allen Byrne
900e75544e Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit '806f5b5b2a280072f62f58c48e93acdc84f2b3ae':
  Removed POSIX #defines from configure on Solaris.
  Fallback to older time functions in new timer code.
 2020-07-14 12:02:43 -05:00
Dana Robinson
806f5b5b2a Merge pull request #2692 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor to develop 
* commit 'b8013380792a3503003f0a2bd60d7541656b03c7':
  Removed POSIX #defines from configure on Solaris.
  Fallback to older time functions in new timer code.
 2020-07-14 11:46:33 -05:00
vchoi
4bc49d8b2b Fix for jira issue HDFFV-11080: 
(1) Patch up the file pointer when reading attribute of variable length datatype
(2) Test to verify the fix when doing multiple threads
 2020-07-14 10:56:33 -05:00
Dana Robinson
b801338079 Removed POSIX #defines from configure on Solaris. 2020-07-14 07:49:00 -05:00
Dana Robinson
4305d9677b Fallback to older time functions in new timer code. 2020-07-14 05:01:22 -07:00
Allen Byrne
9224c7abaa Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit 'b480d0a38b1e265c55c74262bf384d255a33e07b':
  Remove path to szip header file from AM_CPPFLAGS when configure check of libsz fails. Fix for HDFFV-10830.
  HDFFV-11116 Add option for install location of Fortran MOD files
 2020-07-11 12:53:11 -05:00
Larry Knox
b480d0a38b Merge pull request #2686 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop 
* commit '800f93f7c994f88dfa716746153ded4b1e690e3a':
  Remove path to szip header file from AM_CPPFLAGS when configure check of libsz fails. Fix for HDFFV-10830.
 2020-07-11 08:07:10 -05:00
Allen Byrne
e3f5f59a61 Merge pull request #2684 in HDFFV/hdf5 from ~BYRN/hdf5_adb:feature/HDFFV-11116-trilabs-mod-location to develop 
* commit '07a52ecb2ffa1d8d32f06db23470833899db3deb':
  HDFFV-11116 Add option for install location of Fortran MOD files
 2020-07-11 07:10:31 -05:00
Larry Knox
800f93f7c9 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into develop 2020-07-10 13:44:08 -05:00
Larry Knox
0f3fd8d53d Remove path to szip header file from AM_CPPFLAGS when configure check of libsz fails. 
Fix for HDFFV-10830.
 2020-07-10 13:39:59 -05:00
Allen Byrne
b63c9e81dd Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit 'f5da9b1befeb81aa9f4d97df3ec606f801807420':
  Minor changes from normalization with 1.10
 2020-07-09 16:14:34 -05:00
Dana Robinson
f5da9b1bef Merge pull request #2683 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_normalization to develop 
* commit '127d1cfdf06e9c1cd264595c496a063848358a0a':
  Minor changes from normalization with 1.10
 2020-07-09 15:50:43 -05:00
Allen Byrne
07a52ecb2f HDFFV-11116 Add option for install location of Fortran MOD files 2020-07-09 13:03:58 -05:00
Dana Robinson
127d1cfdf0 Minor changes from normalization with 1.10 2020-07-09 08:34:01 -07:00
Allen Byrne
4b12244091 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit '188c43b8ee78d830c22f30fb9adb802e46722fcd':
  Change load path in libhdf5_java.dylib to unversioned libhdf5.dylib for junit tests on Macs.
  Fixes Autotools builds on Solaris after monotonic timer changes
 2020-07-08 07:16:03 -05:00
Dana Robinson
188c43b8ee Merge pull request #2680 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor to develop 
* commit 'd9105b2fcf04f36ea348bf9726a49c05cacc0b78':
  Fixes Autotools builds on Solaris after monotonic timer changes
 2020-07-07 16:38:47 -05:00
Larry Knox
c5af29321b Merge pull request #2677 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop 
* commit 'da607fe4638c9cc08f717fbe65e799c1676c17ff':
  Change load path in libhdf5_java.dylib to unversioned libhdf5.dylib for junit tests on Macs.
 2020-07-07 16:27:45 -05:00
Larry Knox
da607fe463 Change load path in libhdf5_java.dylib to unversioned libhdf5.dylib for 
junit tests on Macs.
 2020-07-07 10:52:58 -05:00
Dana Robinson
d9105b2fcf Fixes Autotools builds on Solaris after monotonic timer changes 
clock_gettime() wasn't being found, so some configure changes
were needed to set an appropriate POSIX level and use a C99
compiler. This required several compiler flag changes.

Autotools only
 2020-07-06 19:22:26 -05:00
Allen Byrne
c80d6fe451 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit 'd52b27ad1d8142945a92310b79ab79171e76a3c3':
  Address CMake and deprecated API build failures from monotonic timer patch.
 2020-07-03 13:56:43 -05:00
Quincey Koziol
d52b27ad1d Merge pull request #2673 in HDFFV/hdf5 from monotonic_timer_fix_01 to develop 
* commit '13c9b3768e6193db89d06faf59194b77d7747f45':
  Address CMake and deprecated API build failures from monotonic timer patch.
 2020-07-03 11:58:55 -05:00
Quincey Koziol
13c9b3768e Address CMake and deprecated API build failures from monotonic timer patch. 2020-07-03 11:28:12 -05:00
Allen Byrne
6b66c969f5 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop) 
* commit '7443e5d53d1c6f15e095de7c44bcc3a5a46d9cf7':
  Add missing '"'.
 2020-07-03 09:36:16 -05:00
Larry Knox
7443e5d53d Merge pull request #2672 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop 
* commit '870e3ba3f45e90a43ea824d67cc8562aa63a3f6f':
  Add missing '"'.
 2020-07-02 18:49:36 -05:00