Commit Graph

23 Commits

Author SHA1 Message Date
Quincey Koziol
df36318b5f Rest of changes for 'top' file pointer to 'shared' file pointer for H5F__accum
routines.
2019-08-19 18:00:05 -05:00
Quincey Koziol
85a56a9c4f Partial H5F__accum_* routines. 2019-08-19 17:47:28 -05:00
Dana Robinson
536a32c59b C and POSIX call cleanup 2019-01-10 17:51:42 -08:00
Quincey Koziol
92300f954f Corrected comment in src/H5VLint.c, fixed pass-through info size in
src/H5VLpassthru.c, switched to stashing VOL connector ID & info in
API context (in src/H5CX.c, src/H5CXprivate.h, src/H5F.c, src/H5Fint.c, and
src/H5Fefc.c), patched up all sorts of issues in the tests, to make them work
with 'check-vfd' (and 'check-vol' again).
2019-01-05 23:06:45 -06:00
Quincey Koziol
3217ffa1ac Add using FAPL from h5_fileaccess() to more tests. 2018-11-22 01:21:50 -06:00
Dana Robinson
e962df1591 VOL FEATURE 2018-10-10 08:10:15 -07:00
Dana Robinson
eb78fd8832 Develop normalization with vol_integration.
Mostly peripheral things like the tools and wrappers,
with just enough core library code to support that.
2018-09-18 22:57:37 -07:00
Quincey Koziol
d812c6fe60 Cleanup API context function usage. 2018-03-18 22:51:19 -05:00
Quincey Koziol
4a17aff408 Add API context interface and use it throughout the library. 2018-03-15 16:54:30 -05:00
Larry Knox
89fbe00dec Merge pull request #426 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to hdf5_1_10
* commit '54957d37f5aa73912763dbb6e308555e863c43f4':
  Commit copyright header change for src/H5PLpkg.c which was added after running script to make changes.
  Add new files in release_docs to MANIFEST. Cimmit changes to Makefile.in(s) and H5PL.c that resulted from running autogen.sh.
  Merge pull request #407 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10_1 to hdf5_1_10_1
  Change copyright headers to replace url referring to file to be removed and replace it with new url for COPYING file.
2017-04-25 16:05:36 -05:00
Quincey Koziol
4fad103187 Bring changes to I/O parameters from page_buffering branch. 2017-03-13 08:21:28 -07:00
Quincey Koziol
b772be716d Merge SWMR-oriented accumulator tests from revise_chunks to develop. 2016-12-18 00:41:13 -08:00
Mohamad Chaarawi
63c90e5c67 [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective metadata optimizations.
- rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library

tested on bb-8 with parallel and serial.
2016-02-10 15:48:34 -05:00
Mohamad Chaarawi
48bebcc39e [svn-r29057] added dxpl type checking when debug mode is enabled (H5_DEBUG_BUILD)
tested on bb-8 with Serial and Parallel, debug and production builds.
2016-02-07 10:37:33 -05:00
Dana Robinson
0a00732c4d [svn-r28696] Minor normalization with revise_chunks.
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           serial only
2015-12-17 01:31:27 -05:00
Quincey Koziol
1023374492 [svn-r27768] Description:
Complete revamp of package initialization/shutdown mechanism in the library.
Each package now has a single init/term routine.

    This new way should avoid packages being re-initialized during library
shutdown and is also be _much_ more proactive about giving feedback for
resource leaks internal to the library.

    Introduces a new "module" header file for packages in the library
(e.g src/H5Fmodule.h) which sets up some necessary package configuration macros
for the FUNC_ENTER/LEAVE macros.  (The VFL drivers have their own slightly
modified version of this header, src/H5FDdrvr_module.h)

    Also cleaned up a bunch of resources leaks all across the library and tests,
along with addressing many warnings, as I encountered them.

Tested on:
    MacOSX/64 10.10.5 (amazon) w/serial & parallel
    Linux/64 3.10.x (kituo) w/serial & parallel
    Linux/64 2.6.x (ostrich) w/serial
2015-09-13 22:58:59 -05:00
Quincey Koziol
95e0006dc2 [svn-r25097] Description:
Make progress toward moving from DXPL IDs to property list structures
within the library.  Also move the signature location code from the H5F
package to the H5FD package, where it's a better fit.  Also, clean up some
more compiler warnings along the way.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel
    (h5committest forthcoming)
2014-04-25 09:32:17 -05:00
Quincey Koziol
3bdb116942 [svn-r25092] Description:
More migration to using H5F_io_info_t pointers and away from using
property list IDs internally.  Also, clean up some compiler warnings in the
cache code.

Tested on:
    Mac OSX/64 10.9.2 (amazon) w/C++, FORTRAN & parallel
    (h5committest forthcoming)
2014-04-24 11:30:24 -05:00
Dana Robinson
e6cace9ee4 [svn-r24376] Updated all code to use HDmalloc, HDcalloc, and HDfree.
Prep work for adding a memory free function, part of HDFFV-8551.

Tested on:
    32-bit LE linux (jam) 
        * with C++, Fortran
        * with thread safety on

    These are minor changes (almost entirely renaming foo functions
    to HDfoo) that don't change functionality.  This should not
    require a full commit test.
2013-10-30 23:20:36 -05:00
Quincey Koziol
a3e98d0e36 [svn-r23219] Description:
Bring reviewed changes from Coverity branch back to trunk (QK & JK):

r20457:
Coverity issue 691: return of H5duo could be negative. Fixed by using
STDOUT_FILENO and redesign parse_command_line and main to cleanup file
allocations. The output_file var is null when using stdout. In cleanup do not
close output_file if NULL.

r20510:
Initialize ufid = -1 and predicate HDclose call on ufid != -1

r20511:
Purpose: Fix coverity issue 1715

Description: Free "file" and nested data on failure in H5FD_core_open.

r20512:
Initialize ifid = -1 and predicate HDclose call on ifid != -1

r20514:
Initialize h5fid = -1 and predicate HDclose call on h5fid != -1

r20516:
Added else branch to the if (ret_value < 0) check.

r20522:
Addressed coverity issues 930-933, 850, 836, 835, 1307.  All minor 
potential buffer overwrite bugs, or coverity errors.  Fixed by replacing
strcpy and sprintf with strncpy and snprintf.

r20523:
fixed coverity issues 68, 1120, 1116i

r20524:
Check  H5Z_SZIP->encoder_present < 1 assuming 0 represents absence.

r20601:
Purpose: Fix coverity issues 1703-1705

Description: Modified the cleanup code in test_free in accum.c to reset
allocated buffers to NULL after they are freed, and modified the error cleanup
code to check if these buffers are NULL before freeing them.  Also fixed some
unrelated warnings in accum.c.

r20602:
Use HDsnprintf and HDstrncat

r20603:
Purpose: Fix coverity issues 808-809

Description: Modified test_core in vfd.c to check the returns from malloc, and
keep track of whether points and check are allocated by setting them to NULL
when they are not.  Added code to free points and check on error if they are
not NULL.  Also fixed unrelated warnings in vfd.c.

r20604:
Use HDstrncpy.

r20605:
Use HDstrncpy and HDstrncat.

r20606:
Purpose: Fix coverity issue 807

Description: Modified long_compact in stab.c to keep track of whether objname is
allocated by setting it to NULL when it is not.  Added code to free objname on
error if it is not NULL.

r20607:
Changed string function calls to use versions that specify the string length
to fix coverity issues 832 and 839.


Tested on:
    Mac OSX/64 10.8.2 (amazon)
    (Too minor to require h5committest)
2013-02-01 20:53:32 -05:00
Quincey Koziol
88a94bbe7f [svn-r22646] Description:
Changes resulting from Klocwork static analysis tool, from Mark Miller
@ LLNL (miller86@llnl.gov).

Tested on:
    Mac OS X/64 10.7.4 (amazon) w/debug, C++ & FORTRAN, using gcc 4.7.x
    (too minor to require h5committest)
2012-08-08 18:01:20 -05:00
Mike McGreevy
8cc44e86a3 [svn-r19623] Purpose:
- Fix a bug in each of the metadata accumulator source and test code
Description:
    - In accum.c test file, switch dxpl_id used in H5F_accum_*
      function calls to H5P_DATASET_XFER_DEFAULT (instead of 
      H5AC_dxpl_id), to fix compilation on windows.
    - Changed boundary checking from <= to < when checking
      if a read from disk with overlapping dirty metadata in the 
      accumulator has the read ending such that it aligns exactly
      with the dirty accumulator (line 234 of H5Faccum.c).
Tested:
    - h5committested
2010-10-18 15:46:08 -05:00
Mike McGreevy
c002883bcc [svn-r19617] Purpose:
Merge accum_tests branch back to the trunk.
Description:
    Changes consist of addition of tests for H5Faccum.c source code,
    as well as some fixes that address some discovered bugs in the
    metadata accumulator on several corner cases.
Tested:
    h5committested
2010-10-15 14:16:41 -05:00