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eaa65c862b
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Author SHA1 Message Date
Quincey Koziol
eaa65c862b Add 'blob' callbacks to VOL, along with a native implementation to store them 
in the global heap, and changed the VL datatype conversion code to use blobs.

Move encode/decode of sequence lengths into VL datatype callbacks, from native
VOL blob routines.
 2019-10-08 14:30:23 -05:00
Dana Robinson
f32e70895e Merge pull request #1985 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:H5Gget_object_behavior_change to develop 
* commit 'ff3278f1a0d57663d73caa6aaa7f209864e9a9bd':
  Fixed a bug (HDFFV-10899) where the behavior of the deprecated H5Gget_objinfo() call had changed and passing in a non-existing soft link with a statbuf of NULL passed instead of failed (as it should as per the RM). The HDF5 1.8 and 1.10 behavior was restored and H5Gget_objinfo() will now fail and return -1 as before.
 2019-10-04 13:28:12 -05:00
Dana Robinson
ff3278f1a0 Fixed a bug (HDFFV-10899) where the behavior of the deprecated 
H5Gget_objinfo() call had changed and passing in a non-existing
soft link with a statbuf of NULL passed instead of failed (as
it should as per the RM). The HDF5 1.8 and 1.10 behavior was
restored and H5Gget_objinfo() will now fail and return -1 as
before.
 2019-10-04 02:03:11 -07:00
Dana Robinson
f2be6da714 Merge pull request #1983 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:small_develop_tweaks to develop 
* commit '638d31a78a9ea5db438d30e78f8cbaa1146b7f87':
  Fixed the java assert issue with H5O cache corking calls.
 2019-10-03 15:34:15 -05:00
Dana Robinson
638d31a78a Fixed the java assert issue with H5O cache corking calls. 2019-10-03 12:12:23 -07:00
Allen Byrne
35bc2d4592 Merge pull request #1980 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit '4394f0776b3e695b9ab383421824e4533da821a8':
  More whitespace changes
  Whitespace cleanup
 2019-10-03 12:54:48 -05:00
Allen Byrne
4394f0776b More whitespace changes 2019-10-03 12:10:24 -05:00
Allen Byrne
8e24fe2bc1 Whitespace cleanup 2019-10-03 11:41:25 -05:00
Allen Byrne
574cc772d5 Merge pull request #1973 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit 'bc6115931877c6f6d63977f2c03c5e2dbffe3e56':
  HDFFV-10919 merge synching
  HDFFV-10408,10918 Add note
 2019-10-02 15:38:39 -05:00
Allen Byrne
bc61159318 HDFFV-10919 merge synching 2019-10-02 15:13:37 -05:00
Allen Byrne
98720d6511 HDFFV-10408,10918 Add note 2019-10-02 13:08:35 -05:00
Allen Byrne
db86b6d397 Merge pull request #1968 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit '643d298823255a684862f4c6eb85ac5afde4b796':
  HDFFV-10918 add tests for h5repack ext storage
 2019-10-02 12:45:29 -05:00
Allen Byrne
643d298823 HDFFV-10918 add tests for h5repack ext storage 2019-10-01 16:38:48 -05:00
Allen Byrne
f4a8792292 Merge pull request #1966 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit '09e6dcbfbb50d359177c9ee72e662287eb04d9c7':
  Add new toolchain file
 2019-10-01 11:48:51 -05:00
Vailin Choi
5c9c07b149 Merge pull request #1959 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/iteration_error_in_test_versionbounds to develop 
* commit '9ea386b6a660bd29225e96a246439db0c7f73da2':
  Fixed the iteration error in test_versionbounds() in test/dtypes.c.
 2019-10-01 10:33:35 -05:00
Allen Byrne
09e6dcbfbb Add new toolchain file 2019-10-01 10:09:16 -05:00
Allen Byrne
69e31596ff Merge pull request #1963 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit 'bbe81a2155bfa42545579761c4f064353d6f68de':
  fix for statement declare of type
 2019-09-30 15:14:02 -05:00
Allen Byrne
bbe81a2155 fix for statement declare of type 2019-09-30 14:50:18 -05:00
Jake Smith
35dc4b56d0 Merge pull request #1958 in HDFFV/hdf5 from ~JAKE.SMITH/hdf5:develop to develop 
* commit 'cab37f63144fd24d1ff39359e3d47a2c16198633':
  Move function-scope macro definition to file-scope.
  Refactor external file addition loop to static function.
  fix declaring variable in for statement
 2019-09-30 14:00:05 -05:00
Jacob Smith
cab37f6314 Move function-scope macro definition to file-scope. 2019-09-30 13:57:09 -05:00
Allen Byrne
d23453e329 Merge pull request #1960 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit 'f6d4ce609b16601f3f4733266bb413a2bd765bc1':
  Add clang toolchain
 2019-09-30 13:35:29 -05:00
Vailin Choi
9ea386b6a6 Fixed the iteration error in test_versionbounds() in test/dtypes.c. 2019-09-30 12:56:49 -05:00
Allen Byrne
f6d4ce609b Add clang toolchain 2019-09-30 12:47:00 -05:00
Jacob Smith
541f50616f Refactor external file addition loop to static function. 2019-09-29 18:52:55 -05:00
Jacob Smith
59aa3afade fix declaring variable in for statement 2019-09-28 16:05:51 -05:00
Larry Knox
4de1fa88c2 Merge pull request #1957 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop 
* commit '3fb711e0ff2516cba7a0cb34f2d8ca38241b06a7':
  Number of arguments requires H5Dopen2.
 2019-09-28 14:33:37 -05:00
Larry Knox
3fb711e0ff Number of arguments requires H5Dopen2. 2019-09-28 13:01:30 -05:00
Dana Robinson
279a3f915b Merge pull request #1956 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to develop 
* commit 'a8a55f3c4863b500c4d0e5a2982d3e2b5a05b3cc':
  Corrected missing parallel #ifdefs.
 2019-09-27 16:50:00 -05:00
Dana Robinson
a8a55f3c48 Corrected missing parallel #ifdefs. 2019-09-27 14:25:04 -07:00
Vailin Choi
a19de0ec83 Merge pull request #1934 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/HDFFV-10585-investigate-slowness-of-regular to develop 
* commit '7924eee0e5ee0745b784c635042b8633886fb799':
  (1) Address the feedback from the PR review (2) Add release notes
  Fix for HDFFV-10585 investigate hyperslab slowness: 1) Improve hyperslab performance when doing I/O from 1-d disjoint file dataspace to 1-d contiguous memory dataspace. 2) Move coding in H5D__chunk_io_init() that is constructing the chunk mappings to a separate routine.
 2019-09-27 12:39:31 -05:00
Dana Robinson
270a363cdc Merge pull request #1955 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:missing_vol_markup to develop 
* commit '4fb64c89fe52a309150ca2d5bb97eb4763e598e9':
  Converted H5O MD cache cork calls to use the VOL.
  Marked up H5Fget/set_mpi_atomicity() to use the VOL.
 2019-09-27 12:34:29 -05:00
Dana Robinson
4fb64c89fe Converted H5O MD cache cork calls to use the VOL. 2019-09-26 19:13:35 -07:00
Dana Robinson
fbb0728f54 Marked up H5Fget/set_mpi_atomicity() to use the VOL. 2019-09-26 19:13:13 -07:00
Vailin Choi
7924eee0e5 (1) Address the feedback from the PR review 
(2) Add release notes
 2019-09-26 14:10:56 -05:00
Vailin Choi
52fef3c6d2 Merge pull request #21 in ~VCHOI/my_third_fork from develop to bugfix/HDFFV-10585-investigate-slowness-of-regular 
* commit '0ea77179d507bd2c29f3b9b357a0c35d4077b29c': (39 commits)
  Fix the errors when updating the versions in the new 1.13 develop branch.
  add missing version to list
  Add new versioned filename to list
  Update N_FSINFO_VERSION_BOUNDS to H5F_LIBVER_NBOUND.
  Remove file script
  Update versioning to next major version
  Update develop branch version to 1.13.0 after creation of hdf5_1_12 branch.
  Merge Binh-Minh's changes for code improvement to chunk_info.c (PR #1942) to develop branch.
  Update to current external file population.
  Revert else-if to single line.
  Fix missing option and incorrect close
  Revert "Moved NDEBUG guards to H5EA_DEBUG in H5EA package."
  Revert "Fix for H5EA debug package when built in release mode."
  Change print calls to HD-wrapped. Minor formatting tweaks (inc. regressions and in-file style-matching).
  Refactor h5repackgentest to have more modular internals, for easier addition of new tests. Update manifest and test script for new hdf5 external-storage .h5 files.
  Remove obsolete symbol
  small syntax changes
  Renamed get/set_time() calls in the tools library to avoid name clash when building static parallel HDF5 w/ static linking to OpenMPI.
  Change unused variable to generic form
  Whitespace cleanup
  ...
 2019-09-26 13:41:56 -05:00
Vailin Choi
0ea77179d5 Merge pull request #1954 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/ver_bounds_114 to develop 
* commit '50ba969a61f8f90212c97aa6e11674fe19fb89f4':
  Fix the errors when updating the versions in the new 1.13 develop branch.
 2019-09-26 13:32:42 -05:00
Vailin Choi
50ba969a61 Fix the errors when updating the versions in the new 1.13 develop branch. 2019-09-26 12:35:11 -05:00
Allen Byrne
a38bfab696 Merge pull request #1953 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit 'e6b029e77e799292eb1ee074b24a224f4613a3b2':
  add missing version to list
 2019-09-26 11:52:04 -05:00
Allen Byrne
e6b029e77e add missing version to list 2019-09-26 10:48:37 -05:00
Allen Byrne
7b09c325cb Merge pull request #1951 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop 
* commit 'a08b3adecea1034cf0a20a6ff35b9980fb3d8cb8':
  Add new versioned filename to list
 2019-09-26 08:59:51 -05:00
Allen Byrne
a08b3adece Add new versioned filename to list 2019-09-26 08:43:41 -05:00
Larry Knox
9c88755922 Merge pull request #1948 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop 
* commit 'd931415bb96aae645832898c2f9eee0d02fe69b4':
  Update N_FSINFO_VERSION_BOUNDS to H5F_LIBVER_NBOUND.
 2019-09-25 18:07:40 -05:00
Larry Knox
d931415bb9 Update N_FSINFO_VERSION_BOUNDS to H5F_LIBVER_NBOUND. 2019-09-25 17:56:39 -05:00
Larry Knox
a563949da4 Merge pull request #1947 in HDFFV/hdf5 from ~BYRN/hdf5_merge_adb:develop to develop 
* commit 'd08db4f8550ee023f2303f3064308c1fa9854552':
  Remove file script
  Update versioning to next major version
 2019-09-25 17:36:24 -05:00
Allen Byrne
d08db4f855 Remove file script 2019-09-25 17:35:52 -05:00
Allen Byrne
b2f52d0b07 Update versioning to next major version 2019-09-25 17:28:17 -05:00
Allen Byrne
46f81a33dd Merge pull request #1944 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop 
* commit 'b04e1ad058fd98fc0b303586dd5f6f19aa645ed0':
  Update develop branch version to 1.13.0 after creation of hdf5_1_12 branch.
 2019-09-25 16:23:52 -05:00
Larry Knox
b04e1ad058 Update develop branch version to 1.13.0 after creation of hdf5_1_12 
branch.
 2019-09-25 16:21:23 -05:00
Larry Knox
6632780f41 Merge pull request #1943 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop 
* commit '2a4bc8c63e842d5e7551e6e75a9ca95c0c2d2886':
  Merge Binh-Minh's changes for code improvement to chunk_info.c (PR #1942) to develop branch.
 2019-09-25 15:10:37 -05:00
Larry Knox
2a4bc8c63e Merge Binh-Minh's changes for code improvement to chunk_info.c (PR #1942) 
to develop branch.
 2019-09-25 14:30:54 -05:00