2515 Commits

Author SHA1 Message Date
Allen Byrne
e9db2519b5 [svn-r26682] Add new test from test script 2015-03-31 16:16:59 -05:00
Albert Cheng
cf11eef385 [svn-r26677] HDFFV-8957: h52gif crashes when run against one of our own examples
The tool claimed it could handle 24bit images but there was no code to handle it.
(or might be there were but was removed by previous revisions.)
Also discovered that it does not accept multiple images nor -p for palette
as its user document and online help message indicated.

Solution: 
Added code to verify dimension sizes are within 8 bit raster images limit and
added tests to verify the tools correctness.
Need to update user document tool.

Tested: h5committested.
2015-03-31 14:13:34 -05:00
Larry Knox
306775bc98 [svn-r26670] Remove VPATH and LONE_COLON
Tested with h5committest
2015-03-30 19:05:07 -05:00
Allen Byrne
45577d5693 [svn-r26660] HDFFV-9131: autotols rework
Remove CXX_CONDITIONAL
remove unneeded/obsolete sections.

h5commtitest
2015-03-30 13:55:21 -05:00
Mohamad Chaarawi
01093ad350 [svn-r26649] squish warnings. 2015-03-30 10:12:49 -05:00
Quincey Koziol
6f75afd15e [svn-r26635] Description:
Bring r26651 from autotools_rework branch to trunk:

    Remove the VSNPRINTF_WORKS macro, it's working around bugs in old SGI
& HP compilers.

Tested on:
    Linux/32 2.6.18 (jam) w/serial & parallel
    (Daily tested on branch for 2+ days)
2015-03-27 19:37:08 -05:00
Allen Byrne
451a91e53b [svn-r26594] Merge macros and fortran changes from dual_binary feature.
Tested: local linux
2015-03-25 17:08:46 -05:00
Jerome Soumagne
1cd7c16a9d [svn-r26509] Run reconfigure after merges from autotools_rework branch. 2015-03-20 14:15:51 -05:00
Jerome Soumagne
8a1d1b24cf [svn-r26505] Merge r26435 from autotools_rework branch.
Remove DEFAULT_LIBS from configure.ac and irix6.x config file which
was using it.

Remove references to IRIX/irix* platform.
2015-03-20 14:04:30 -05:00
Dana Robinson
7659506fa8 [svn-r26438] Fixed some double promotion warnings from gcc 4.9.2. Most were in
format strings.

Tested on: h5committest
2015-03-11 17:51:14 -05:00
Dana Robinson
5aa5ed84da [svn-r26408] Missed an H5_HAVE_FILTER_SHUFFLE line.
Part of: HDFFV-9086

Tested on: jam (minor change)
2015-03-09 15:12:18 -05:00
Mohamad Chaarawi
89ffc9f2d7 [svn-r26387] warning fixes from Feb27. 2015-03-06 14:53:23 -05:00
Allen Byrne
ec2e071c00 [svn-r26380] Recapture updated error files for h5dump tests 2015-03-06 08:53:42 -05:00
Dana Robinson
d8e3d8e908 [svn-r26333] Eliminates gcc warnings due to -Wunsuffixed-float-constants.
- Adds 'F' suffixes for most float constants.

- A few constants MUST be of type double. These now receive the long
  double L suffix and are then cast to double. I do this via a new
  H5_DOUBLE() macro which was added to H5private.h.

Fixes: HDFFV-9148

Tested on: h5committest
2015-03-01 13:48:54 -05:00
Dana Robinson
7462a7ef1c [svn-r26329] Merge of r26069, r26070, and r26072 from the features/autotools_rework
branch.

Removed the configure option that allows selective disabling of individual
internal filters (fletcher32, shuffle, etc.).

This feature mucked up the code with a lot of #ifdefs, saved very little space,
and was not scalable to a general scheme for library size reduction. We've
decided to remove the feature while we investigate a more general scheme for
decreasing the library size.

Part of: HDFFV-9086

Tested on: h5committest
2015-02-27 07:50:38 -05:00
Allen Byrne
aad4250bd6 [svn-r26305] convert dump_dcpl to use switch statement
Add default case
refactor out start ctx and end ctx
Tested: local linux
2015-02-25 15:20:31 -05:00
Mohamad Chaarawi
c4044e0c85 [svn-r26303] remove files with .clog2 extension generated by MPE when doing make clean. 2015-02-25 13:48:31 -05:00
Mohamad Chaarawi
0c29ac42cd [svn-r26279] re-commit 26260 that Dana moved out fixing the versioning of functions to work with v16 default API. 2015-02-23 10:14:43 -05:00
Dana Robinson
7e220930da [svn-r26276] Merged r26075-80, 86 from features/autotools_rework branch.
Cleans up time functions in the autotools input files. Removed deprecated
gettimeofday() time zone code and configure processing. Also removed
some unused time function configure checks and defines.

Fixes: HDFFV-9083 and HDFFV-9085

Tested on: 32-bit linux, serial and parallel (jam)
           OS X (kite)
           Solaris (emu)
2015-02-23 01:56:16 -05:00
Dana Robinson
f634105bdb [svn-r26271] Reverse merge of r26260 which was causing daily test failures.
Tested on: jam w/ parallel and fortran
2015-02-22 03:38:18 -05:00
Mohamad Chaarawi
fcd77ffe7e [svn-r26260] - add an attribute callback to call H5_term_library when MPI_COMM_SELF is destroyed.
- add tests for above.
- this is a fix for HDFFV-883.

tested h5committest
2015-02-20 16:33:48 -05:00
Mohamad Chaarawi
32c030ad2b [svn-r26223] add another H5close before finalize so with-mpe does not fail. 2015-02-18 16:37:25 -05:00
Allen Byrne
73bb11dda3 [svn-r26208] Update cmake minimums 2015-02-18 11:56:22 -05:00
Scot Breitenfeld
b28b5fade9 [svn-r26188] Merged autotools fixes into the trunk:
HDFFV-9089, HDFFV-9091, HDFFV-9092, HDFFV-9094, HDFFV-9095
2015-02-16 12:17:49 -05:00
Mohamad Chaarawi
74fbb9e327 [svn-r26180] merge configure fixes for HDFFV-9068,9069,9096,9097,9135 from autotools_rework branch:
- Remove Infering parallel compilers (C and Fortran) from configure.ac
- Remove restriction to build shared with parallel
- Cleanup parallel sections in configure.ac
- remove large file support checks
- MPE fixes.

tested with h5committest.
2015-02-16 11:17:03 -05:00
Allen Byrne
055348122d [svn-r26040] HDFFV-9018: Install pdb files to bin folder with dlls. 2015-01-26 15:23:19 -05:00
Allen Byrne
5da20c221e [svn-r25955] Added Perform and io_timer back into build.
Tested: local linux cmake
2015-01-05 16:52:26 -05:00
Albert Cheng
6a982a7690 [svn-r25954] HDFFV-9046: reorganize hdf5/perform, step 2
Last changes had caused problems with Windows platform:
1. H5private.h in io_timer.h is not accessible in the distributed shared library of tools.
   Need to move it to io_timer.c.
2. debug_start_stop_time() would not be available outside of h5perf. Some favor of compiler
   does not like it.  Screened it out for now.
3. mere "extern" is not good enough for Windows shared library. Must mark them as DLL. Need to mark them as 
   "H5TOOLS_DLL".
4. STANDALONE mode is broken. Screened out the code for now.

Tested; h5committest.
2015-01-05 16:47:34 -05:00
Allen Byrne
6b109315f5 [svn-r25951] HDFFV-9054: disable io_timer in tools lib and perform sub-folder due to SHARED compile issues and other issues. 2015-01-05 11:21:22 -05:00
Albert Cheng
fe1bf91042 [svn-r25946] Removed debug statments that use //.
Tested: env CFLAGS=-ansi buildhdf5 in jam and parallel platypus.
2015-01-03 23:51:03 -05:00
Albert Cheng
c803666ec2 [svn-r25940] HDFFV-9046: reorganize hdf5/perform, step 2
Move timing measurement routines used by h5perf and h5perf_serial to tools/lib
so that they can be used by other tools too.

tools/lib/io_timer.c
tools/lib/io_timer.h
tools/perform/io_timer.c
tools/perform/io_timer.h
    renamed perform/io_timer.[ch] to lib/io_timer.[ch]

tools/lib/Makefile.am
tools/lib/Makefile.in
tools/lib/CMakeLists.txt
tools/perform/Makefile.in
tools/perform/Makefile.am
tools/perform/CMakeLists.txt
MANIFEST
    updated due to the move.

Tested; h5committest and jam (serial)
2015-01-01 11:24:55 -05:00
Allen Byrne
dcc956f594 [svn-r25938] Remove build and test commands for deleted benchpar.c 2014-12-31 13:06:27 -05:00
Albert Cheng
aebc4ae149 [svn-r25932] HDFFV-8902: merge the source code of h5perf and h5perf_serial, stage 1.
tools/perform/sio_timer.h:
tools/perform/pio_timer.c:
tools/perform/io_timer.h:
tools/perform/io_timer.c:
    Renamed pio_timer.[ch] as io_timer.[ch];
    merged content of sio_timer.[ch] into io_timer.[ch] so that both h5perf and h5perf_serial
    call the combined io_timer.[ch].
    Moved the debug printing code segment in set_time() in [sp]io_timer.c to as debug_start_stop_time() in [sp]io_perf.c where it belongs.
    Screened out set_timer_type() and get_timer_type() which were not used by any code.

tools/perform/Makefile.am:
tools/perform/Makefile.in:
tools/perform/CMakeLists.txt
    Adjusted to use io_timer.c for both h5perf and h5perf_serial.

tools/perform/pio_perf.c:
tools/perform/sio_perf.c:
tools/perform/pio_perf.h:
tools/perform/sio_perf.h:
    Renamed [sp]io_time_destory() to same io_time_destroy();
    Moved the debug printing code segment in set_time() in [sp]io_timer.c to as debug_start_stop_time() in [sp]io_perf.c where it belongs.

tools/perform/pio_engine.c:
tools/perform/sio_engine.c:
    Removed #include io_timer.h since it was already #include by [sp]io_perf.h.

MANIFEST:
    Updated the merge of [sp]io_timer.[ch] into io_timer.[ch].

Tested: h5committest and jam in extra.
2014-12-30 00:56:05 -05:00
Allen Byrne
e0c586cd98 [svn-r25918] If not testing skip building test only programs. 2014-12-22 09:45:46 -05:00
Albert Cheng
91f7c2797f [svn-r25909] HDFFV-8156: perform/benchpar failed to run
Benchpar.c is retired/deleted. If it is ever needed, it can be retrieved from the SVN repository
or even previous version of HDF5 source code.

Tested: jam parallel make passed.
2014-12-19 12:02:04 -05:00
Allen Byrne
98958b530a [svn-r25904] Fix CMP0054 warning 2014-12-19 10:13:55 -05:00
Albert Cheng
d9ba0ae35f [svn-r25900] HDFFV-9046: reorganize hdf5/perform/ directory
Moved perform/ to tools/perform. Updated all the configure related files for the new location.

Tested: h5committested plus tested in jam and kite.
2014-12-17 18:07:24 -05:00
Albert Cheng
52bff896a7 [svn-r25771] Bug fix: HDFFV-8954
Previously, ph5diff may hang in a test in Linux 32 platform(HDFFV-587).
No solution was available and a patch to bypass the test is implemented.

Since the company is changing domain name soon, the patch would not be valid any more.
Tests were done (repeat 100 mpiexec -np 6 ./ph5diff -v h5diff_hyper1.h5 h5diff_hyper2.h5)
and the previous hanging problem did not occur. It is likely the newer versions of
mpich no longer have this problem.  Therefore, it is decide to remove this patch
to make the test script cleaner, if nothing else.

Tested: ran build and test in Jam (linux 32) and the repeat 100 command mentioned above.
All passed.
2014-11-03 19:37:29 -05:00
Dana Robinson
81f7e6b1d3 [svn-r25755] Removed spurious casts in a few HDfree() statements.
Discovered when I temporarily #defined HDfree() to a more complicated
function while investigating something. 

Tested on a local linux VM. This is a very minor change.
2014-10-31 13:11:42 -05:00
Allen Byrne
73465a6bc2 [svn-r25745] Testfiles for h5dump bitfields and opaques 2014-10-27 16:47:24 -05:00
Allen Byrne
573d47083b [svn-r25744] Add bitfield and opague datatype file for tests.
Tested: local linux
2014-10-27 15:50:33 -05:00
Allen Byrne
3fa8cd322f [svn-r25741] Remove obsolete comment and add test to suite. 2014-10-27 13:34:25 -05:00
Allen Byrne
5a4357e4fb [svn-r25570] UNDO:Added option to build tools static when building shared libraries. This will prevent 'dll' being appended to the tool name on windows. See HDFFV-8292.
Windows DLL linkage problem because of defines needed.

Tested: local linux
2014-09-03 14:04:18 -05:00
Allen Byrne
c23f3a7ea5 [svn-r25569] Added option to build tools static when building shared libraries. This will prevent 'dll' being appended to the tool name on windows. See HDFFV-8292.
Tested: local linux
2014-09-03 12:12:52 -05:00
Mohamad Chaarawi
88fb6b1374 [svn-r25531] remove use of C99 PRI that failed on windows in dtypes.c
fix bugs where hid_t were assumed to be 32 bit ints or herr_t.
2014-08-11 14:13:45 -05:00
Quincey Koziol
33ea1ada24 [svn-r25496] Description:
Merge 64-bit ID changes from branch to trunk.  (Plus a few minor cleanups
that aren't on the branch)

Tested on:
    Mac OSX/64 10.9.4 (amazon) w/C++ & FORTRAN
    (h5committested on branch already for a week)
2014-07-30 15:55:14 -05:00
Mohamad Chaarawi
06ef71a37f [svn-r25397] - remove configure checks for MPI_File_get_size and Big
MPI_File_set_size as they are supported by most MPI implementations.
- fix bug in t_mpi.c (HDFFV-8856)
2014-07-07 13:22:48 -05:00
Allen Byrne
d867178192 [svn-r25249] change test to ignore h5diff warnings (endianess issue) 2014-06-10 11:21:30 -05:00
Quincey Koziol
60f8a4100e [svn-r25215] Description:
Bring changes from Coverity branch back to trunk:

r20914:
    Use HDstrncpy and HDstrncat! --gh

20915:
    Use HDstrncpy and HDstrncat! --gh

Tested on:
    Mac OSX/64 10.9.3 (amazon) w/gcc 4.9.0, C++, FORTRAN & parallel
    (too minor to require h5committest)
2014-05-25 00:55:39 -05:00
Quincey Koziol
a613b70f93 [svn-r25197] Description:
Bring changes from hdf5_1_8_coverity branch back to trunk:

r20878:
    Issue 76: Check if H5Tget_nmembers(type) fails and simply return(FALSE). Also move printf to after check.

r20880:
    Issue 192: Create ret_val var set to -1. Add out label for failures to jump to, return ret_val at bottom.

r20882:
    Fixes for coverity:
    1) bug #1679: remove dead code in test/mf.c
    2) bug #1680: remove dead code in tools/lib/h5diff_dset.c

r20883:
    Fix coverity issue 585

    Description:
    Changed variable "c" in processStrData in h5import.c to an int, to match fgetc
    return value, and removed call to feof, instead checking if c == EOF.

Tested on:
    MacOSX/64 10.9.3 (amazon) w/C++, FORTRAN & parallel
    (too minor to require h5committest)
2014-05-16 22:22:51 -05:00