Commit Graph

1520 Commits

Author SHA1 Message Date
Allen Byrne
a03d35dc22 HDFFV-9407 Add test 2019-06-24 07:28:39 -05:00
Allen Byrne
e7f16c6f2c HDFFV-10805 Add option to only build shared targets
HDFFV-10805 Add ONLY_SHARED_LIBS option and prefer shared over static
HDFFV-10803 Update FindSZIP.cmake find module
Remove unneeded modules and update java modules
2019-06-18 07:46:25 -05:00
Dana Robinson
72dd01b76b Added a warning summary script for gcc to bin 2019-06-17 13:35:08 -07:00
Vailin Choi
f7c2a75404 Merge pull request #1729 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/HDFFV-10800-h5ocopy-failure to develop
* commit 'dfdc27b04b2e8bcd1985ba90ce6553d8b3805fda':
  Fix release notes based on feedback from pull request.
  Fix for HDFFV-10800 H5Ocopy failure: The value for the H5F_LIBVER_V18 index in H5O_fill_ver_bounds[], the format version bounds array for fill value message, should be version 3 not 2.
2019-06-17 10:28:58 -05:00
Larry Knox
68fb1c9f37 Merge pull request #1738 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to develop
* commit '6c3f90ae222a8d4e8d8edf172a6745028209b75c':
  Update MANIFEST for move of h5cc.in and h5redeploy.in to bin directory.
2019-06-15 14:30:03 -05:00
Larry Knox
6c3f90ae22 Update MANIFEST for move of h5cc.in and h5redeploy.in to bin directory. 2019-06-15 12:34:07 -05:00
Dana Robinson
bb9370d777 Merge branch 'develop' into vol_dev_headers
Also moved the wrapper functions from the H5VLconnector.h to
H5VLconnector_passthru.h
2019-06-14 12:23:06 -07:00
Scot Breitenfeld
9a82fa66d4 Merge pull request #1708 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:H10621 to develop
* commit '0742c15fca95965ed4eb87c6d54f41bb07bd4526':
  makefile clean-up
  move the vol_info to an optional parameter
  added H5Pset_vol
  added vol connector
  added test for vol_connector
  removed H5VL constants
  removed VOLL NULL connector and replaced it with native VOL
  added connector_name test
  added missing files
  add tests
  added more tests
  added missing files
  Implemented VOL APIs and C constants, no tests
  Implemented VOL APIs and C constants, no tests
  initial API impl.
2019-06-12 16:06:21 -05:00
Vailin Choi
8d72e5e3e0 Fix for HDFFV-10800 H5Ocopy failure:
The value for the H5F_LIBVER_V18 index in H5O_fill_ver_bounds[], the format
version bounds array for fill value message, should be version 3 not 2.
2019-06-12 12:55:12 -05:00
Larry Knox
5385f032dd Modified Makefile.ams for h5repack, h5watch and gif2h5 to allow
disabling tests.
Moved h5cc.in from tools/src/misc to src directory to always create h5cc
whether or not tools are enabled.
Added configuration status of tools and tests to libhdf5.settings.
2019-06-12 10:21:41 -05:00
Dana Robinson
d5a8b2a80c Split VOL connector routines into separate headers:
* H5VLconnector.h for terminal connector things
* H5VLconnector_passthru.h for passthrough connector things

Note that these headers are arranged such that they are included in
hdf5.h so VOL connectors only need to include that. The separation into
multiple headers is mainly for readability.
2019-05-24 02:22:08 -07:00
M. Scot Breitenfeld
32c4900e89 removed VOLL NULL connector and replaced it with native VOL 2019-05-16 15:05:12 -05:00
M. Scot Breitenfeld
19d2cea9ae added -M HPC to ctest command 2019-05-10 14:34:56 -05:00
M. Scot Breitenfeld
cf6f2f039d Adding cross-compilation for theta (ANL) and qsub (COBALT) batch controls. 2019-05-09 16:45:22 -05:00
M. Scot Breitenfeld
7dd53873f7 Merge branch 'develop' into H10621 2019-04-24 12:57:30 -05:00
Ray Lu
bdb11caa53 Merge pull request #1600 in HDFFV/hdf5 from ~SONGYULU/hdf5_ray:HDFFV-10658-performance-drop-from-1-8 to develop
* commit 'b5ef82a1786605ae86502bc82086047720b7d4ca': (21 commits)
  Moving the handling of null prefix into H5_combine_path.
  Changing the prefix of external file and VDS from empty string to null for performance improvement.
  Improving the condition checking of empty string.
  Replacing string operation strdup with assignment for empty string.
  Adding back links_env.out which I accidentally removed in my previous commit.
  Taking out two unnecessary diff output files.
  Taking out unnecessary diff files for output.
  Adding some comments.
  Some coding style changes.
  Adding the standard output files for the external_env.c and vds_env.c tests.
  Small correction for my previous commit.
  Forgot to add external_common.c and external_common.h.
  Updated CMake for the splitting of external.c and vds.c.
  Minor fix: removal of unnecessary enum values.
  Minor fixes: updating the test vds_env.c according to the set up of vds.c.
  Left out this file in previous commit.
  HDFFV-10658 - setting and getting properties in API context: 1. switched to use the existing H5F_prefix_open_t for enum type; 2. put the common private function used by external.c and external_env.c into external_common.c
  This commit basically has the following changes: 1. restored the datatype, dataspace, and LCPL of the dataset for VOL connector back to the properties. 2. splitted external.c and vds.c because they called HDsetenv in the program, instead using shell scripts to set the environment variables. 3. changed H5CX_get_vds_prefix and H5CX_get_ext_file_prefix to use H5P_peek instead of H5P_get.
  HDFFV-10658: I left out this file in my previous commit.
  HDFFV-10658: 1. moving HDgetenv to dataset initialization stage to reduce the overhead; 2. restoring the retrieval of three vol properties to H5P_get instead of using API context to prepare for Quincey's upcoming refactoring work.
  ...
2019-04-18 10:25:18 -05:00
Songyu Lu
1d1e96f1dd Some coding style changes. 2019-04-11 15:51:21 -05:00
Dana Robinson
9ee3d47211 Renamed the HDF5_TEST_VOL option to HDF5_TEST_PASSTHROUGH_VOL. 2019-04-11 11:27:12 -07:00
Songyu Lu
c0b13e078e Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/~songyulu/hdf5_ray into HDFFV-10658-performance-drop-from-1-8 2019-04-09 18:11:06 -05:00
Songyu Lu
477dda3c0d HDFFV-10658 - setting and getting properties in API context:
1. switched to use the existing H5F_prefix_open_t for enum type;
2. put the common private function used by external.c and external_env.c into external_common.c
2019-04-09 16:20:19 -05:00
Vailin Choi
2886cd9e45 HDFFV-10365: Changes as described in the RFC: H5Sencode/H5Sdecode Format Change.
This also addresses HDFFV-10255: H5Sencode/decode performance issue.
2019-04-06 16:55:14 -05:00
Dana Robinson
fc3f606d5c Fixed the MANIFEST 2019-03-07 14:38:11 -08:00
M. Scot Breitenfeld
07fde1e25c Merge branch 'develop' into H10621 2019-03-07 14:47:38 -06:00
Jordan Henderson
3acd486b83 Fixes for JNI updates 2019-02-12 11:56:42 -06:00
Allen Byrne
d0be2f5840 CMake script changes to simplify execution 2019-02-08 10:48:49 -06:00
Allen Byrne
3ebfd7edd4 Remove obsolete file 2019-02-06 08:45:59 -06:00
Larry Knox
5352bf4971 Add new files to MANIFEST.
Update permissions for raybsub to 755.
2019-02-01 08:57:52 -06:00
Binh-Minh Ribler
51e0107d18 Added data file for test and updated MANIFEST 2019-01-25 00:19:16 -06:00
Dana Robinson
287b5d03df Fixed the MANIFEST 2019-01-09 07:22:46 -08:00
Allen Byrne
eaaddcc9e5 Add PGI toolchain 2019-01-02 14:39:38 -06:00
Vailin Choi
d3dff6efe6 Merge branch 'develop' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into develop
Resolve conflicts:
Conflicts:
	test/Makefile.am
2019-01-02 13:23:54 -06:00
Dana Robinson
b30a1fe44a Merge pull request #1400 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:openmpi_tweaks to develop
* commit 'd6c2a96ac2f103d90b96d5b39814810e6a31ef99':
  Updated the parallel install docs.
  Eliminated the need for a separate script variable.
  Added a helpful message to the flush script.
  Added a shell script so we can run the parallel flush test on OpenMPI.
2018-12-31 13:33:31 -06:00
Dana Robinson
a3faa92653 Merge branch 'develop' into openmpi_tweaks 2018-12-30 22:24:42 -08:00
Vailin Choi
e035c7abdd Changes based on feedback from pull request. 2018-12-31 00:11:45 -06:00
Vailin Choi
f808c108ed Fix for HDFFV-10659: The library abort with "infinite loop closing library"
after deleting attributes in densed storage.
The fix: When deleting attribute nodes from the name index v2 B-tree,
if an attribute is found in the intermediate B-tree nodes, which may be
merged/redistributed in the process, we need to free the dynamically
allocated spaces for the intermediate decoded attribute.
2018-12-28 16:49:11 -06:00
Dana Robinson
dac76c579b Merge branch 'develop' into yay_plugins 2018-12-28 12:55:15 -08:00
Dana Robinson
552fec96e9 Merge branch 'develop' into md_cache_logging_squash 2018-12-27 22:22:24 -08:00
Dana Robinson
621014be28 Added a simple test for registration of VOL connector plugins.
Autotools only for right now, but this will be fleshed out in future
work.
2018-12-27 15:50:04 -08:00
Allen Byrne
7d28a4295e Merge pull request #1407 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '991996b25122ff010b9af1bbb6cc05be491ce038':
  Remove unused CMake files
  Update option text
  Add reference file to list
  HDFFV-10656 remove moved source
  HDFFV-10656 Add CHECK_VOL support to CMake
2018-12-21 14:41:29 -06:00
Allen Byrne
991996b251 Remove unused CMake files 2018-12-21 12:22:32 -06:00
Dana Robinson
18e6ec82d0 Squash merge of MDC logging changes. 2018-12-20 20:41:42 -08:00
Allen Byrne
7e8923957f HDFFV-10656 Add CHECK_VOL support to CMake 2018-12-20 15:11:27 -06:00
Dana Robinson
75a03ea0c3 Merge branch 'develop' into vol_tweaks 2018-12-20 12:08:13 -08:00
Dana Robinson
a06249a21b Moved private native VOL connector functions to H5VLnative_private.h. 2018-12-20 10:47:00 -08:00
Dana Robinson
fe1a5b4279 Added a shell script so we can run the parallel flush test
on OpenMPI.
2018-12-20 03:03:16 -08:00
Dana Robinson
9cfe7fd18d Split the native VOL connector code into multiple files and
moved the attribute code over.
2018-12-19 17:41:50 -08:00
Allen Byrne
f9e9c1ad0e HDFFV-10664 Add new functions and constants to java interface 2018-12-19 12:59:05 -06:00
Allen Byrne
c92f11b368 HDFFV-10632 update new files 2018-12-14 08:12:51 -06:00
Scot Breitenfeld
5267454ebd Implemented VOL APIs and C constants, no tests 2018-12-07 12:00:47 -06:00
Allen Byrne
eb1b3f42c4 HDFFV=10632 test cleanup 2018-12-06 07:54:19 -06:00