Commit Graph

19957 Commits

Author SHA1 Message Date
Dana Robinson
8b00d921d7 Updated H5Tcopy() to get the dataset's datatype through the VOL when
that is passed in as the object ID.
2019-06-23 22:34:08 -07:00
Allen Byrne
21e147da71 Fix fortran test and test library linking 2019-06-23 13:52:30 -05:00
Quincey Koziol
60dee604cd Merge pull request #1764 in HDFFV/hdf5 from ~KOZIOL/hdf5:feature/update_gcc_flags to develop
Updated CMake bulids, too.

* commit '17ae90917856e4cbab5a2f1c597197ee98802fc7':
  Update GCC 6 & 7 flags for CMake builds
  Move -Wnormalized down into GCC 6.x flags
  Add support for GCC 7.x warnings, update warnhist script to account for them, clean up warnings.
2019-06-22 19:37:18 -05:00
Quincey Koziol
17ae909178 Update GCC 6 & 7 flags for CMake builds 2019-06-22 19:34:47 -05:00
Quincey Koziol
4e3a0c505c Move -Wnormalized down into GCC 6.x flags 2019-06-22 11:41:33 -05:00
Quincey Koziol
128853b58a Merge branch 'develop' into feature/update_gcc_flags 2019-06-22 11:39:25 -05:00
Allen Byrne
df4ec243d4 Merge pull request #1759 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '468b130be3b77fe07b29709cd3fa854422fefa9c':
  Add lib dir for testing plugins
2019-06-22 10:06:58 -05:00
Dana Robinson
2d1017e381 Merge pull request #1763 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:memcpy_buffer_overlap_check to develop
* commit '5a6afeffd44c3ba51ce0e0fa11053c83e0807685':
  Put the memcpy overlap check back into H5MM.
2019-06-21 20:45:11 -05:00
Dana Robinson
5a6afeffd4 Put the memcpy overlap check back into H5MM. 2019-06-21 17:31:56 -07:00
Dana Robinson
7ef0e3f941 Merge pull request #1761 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:t_filters_parallel_bugs to develop
* commit '5aa8bc154dd9fcfdf6c7cbbe0611cb200f0a420e':
  Fixed the heap overflow in t_filters_parallel
2019-06-21 16:56:53 -05:00
Quincey Koziol
3dcc89625c Merge branch 'develop' into feature/update_gcc_flags 2019-06-21 16:56:11 -05:00
Dana Robinson
5aa8bc154d Fixed the heap overflow in t_filters_parallel 2019-06-21 14:13:16 -07:00
Dana Robinson
8eabdd28af Merge pull request #1760 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:t_filters_parallel_bugs to develop
* commit 'b4bd49ffdd5e313cd840698709f44f05ea323104':
  Fixed some low-hanging fruit from -fsanitize in t_filters_parallel.
2019-06-21 15:48:53 -05:00
Dana Robinson
b4bd49ffdd Fixed some low-hanging fruit from -fsanitize in t_filters_parallel. 2019-06-21 13:18:09 -07:00
Allen Byrne
468b130be3 Add lib dir for testing plugins 2019-06-21 13:46:46 -05:00
Quincey Koziol
1ccbdfee58 Add support for GCC 7.x warnings, update warnhist script to account for them,
clean up warnings.
2019-06-21 10:05:34 -05:00
Allen Byrne
5fc5d947f0 Merge pull request #1749 in HDFFV/hdf5 from ~BYRN/hdf5_merge_adb:develop to develop
* commit 'c24f11070aea56331110628d7645332534e4f227':
  Add H5_HLDLL prefix for windows link
  HDFFV-10805 cleanup examples and test code
  Add missing fortran mods
  HDFFV-10805 Fix test of library libinfo
  Cleanup possible CMake target conflicts
  Correct CMake issues
2019-06-20 17:02:49 -05:00
Vailin Choi
61b2dddc25 Checkin for new shutting down free-space manager. 2019-06-20 16:14:33 -05:00
Allen Byrne
c24f11070a Add H5_HLDLL prefix for windows link 2019-06-20 08:54:49 -05:00
Allen Byrne
1e31a86dab Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '2e973f7e12301975f9d8dfdd5534682525554e77':
  Fix minor typo in H5S_select_iter_release
  Fix memory leak in objcopy test after H5Aread of vlen data
2019-06-20 06:55:29 -05:00
Allen Byrne
b106b883cc HDFFV-10805 cleanup examples and test code 2019-06-20 06:31:01 -05:00
Jordan Henderson
2e973f7e12 Merge pull request #1754 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to develop
* commit '6c62678939b66400247dbbf4f9d0c32381a956d1':
  Fix minor typo in H5S_select_iter_release
2019-06-19 18:54:33 -05:00
Jordan Henderson
6c62678939 Fix minor typo in H5S_select_iter_release 2019-06-19 18:06:05 -05:00
Vailin Choi
246b40f8f8 Merge pull request #6 in ~VCHOI/my_third_fork from develop to bugfix/new_shutdown_fsm
* commit 'ca1ee7fae118c8d4137b1b5efe57660d2e0ff9b1': (64 commits)
  Fix memory leak in objcopy test after H5Aread of vlen data
  HDFFV-10616 add h5fc script
  Fixed a problem in the ohdr test where hard-coded strings passed to H5Awrite() triggered -fsanitize failures.
  Yanked qsort assert
  Switched to HGOTO_DONE() in the links code.
  Updated the HDqsort() macro to ensure we don't pass NULL buffers to qsort(3) in the future.
  Fixed a bug in the links code where iterating over an empty group would pass a NULL pointer to qsort(3), which is undefined behavior.
  Reset the other convenience pointer because why no
  Fixed a memory bug where a pointer is used after it's been freed.
  fixed pass_through vol
  HDFFV-10805 Add option to only build shared targets
  Fixed a warning in H5CX.c concerning incorrect use of freeing VOL connector info.
  Add H5S_SEL_ITER_SHARE_WITH_DATASPACE selection iterator creation flag, to share dataspace's selection with iterator (and with caution about not modifying or closing the dataspace while the iterator is open).
  Added a warning summary script for gcc to bin
  Fix misc. typos, etc. from code review
  Fixed problem with H5Fdelete "test" and split VFD.
  New hyperslab selection routines and new public selection iterator routines.
  Added the creation and use of an attribute access property list to testhdf5.
  Update MANIFEST for move of h5cc.in and h5redeploy.in to bin directory.
  Added missing DELETE enum value.
  ...
2019-06-19 16:43:23 -05:00
Jerome Soumagne
ca1ee7fae1 Merge pull request #1753 in HDFFV/hdf5 from ~JSOUMAGNE/hdf5:topic_fix_objcopy_leak to develop
* commit '552cc1b4a4d1757d64f1b930135e0320a10ce8ce':
  Fix memory leak in objcopy test after H5Aread of vlen data
2019-06-19 16:24:56 -05:00
Allen Byrne
aa9a979fbb Add missing fortran mods 2019-06-19 15:42:35 -05:00
Allen Byrne
72116376b1 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'cc267767af89bf95807afc4e7b25d82638ef4892':
  HDFFV-10616 add h5fc script
2019-06-19 14:05:10 -05:00
Allen Byrne
cc267767af Merge pull request #1751 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to develop
* commit '9397d67d91eb628b3b9096501cdab0a33335564c':
  HDFFV-10616 add h5fc script
2019-06-19 14:03:44 -05:00
Jerome Soumagne
552cc1b4a4 Fix memory leak in objcopy test after H5Aread of vlen data 2019-06-19 14:03:21 -05:00
Allen Byrne
08df37027c HDFFV-10805 Fix test of library libinfo 2019-06-19 13:59:49 -05:00
Allen Byrne
11f83e55ec Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'b9ec6a6400a556b1250c249e158c4fffafccd550':
  fixed pass_through vol
2019-06-19 13:55:34 -05:00
Allen Byrne
9397d67d91 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'b9ec6a6400a556b1250c249e158c4fffafccd550':
  fixed pass_through vol
2019-06-19 13:55:27 -05:00
Scot Breitenfeld
b9ec6a6400 Merge pull request #1746 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to develop
* commit 'a67c578e4b9275fa12b427b6e13021536838a448':
  fixed pass_through vol
2019-06-19 13:52:21 -05:00
Allen Byrne
5c865bd106 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '4d20db43bea4bc4588b20abebef5b0d043dcf31d':
  Fixed a problem in the ohdr test where hard-coded strings passed to H5Awrite() triggered -fsanitize failures.
2019-06-19 11:51:17 -05:00
Allen Byrne
d1b4eda28a HDFFV-10616 add h5fc script 2019-06-19 10:42:37 -05:00
Allen Byrne
562cd7f3ab Cleanup possible CMake target conflicts 2019-06-19 10:35:55 -05:00
Dana Robinson
4d20db43be Merge pull request #1750 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:ohdr_test_memory_issue to develop
* commit '6a1e9a1fbe9606d0dd3452092cab17794e131e64':
  Fixed a problem in the ohdr test where hard-coded strings passed to H5Awrite() triggered -fsanitize failures.
2019-06-19 10:23:04 -05:00
Allen Byrne
2051ee9118 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit 'c6e21cede788790b39af4a46a8bc15e49e382346':
  Yanked qsort assert
  Switched to HGOTO_DONE() in the links code.
  Updated the HDqsort() macro to ensure we don't pass NULL buffers to qsort(3) in the future.
  Fixed a bug in the links code where iterating over an empty group would pass a NULL pointer to qsort(3), which is undefined behavior.
2019-06-19 10:06:52 -05:00
Dana Robinson
6a1e9a1fbe Fixed a problem in the ohdr test where hard-coded strings passed
to H5Awrite() triggered -fsanitize failures.
2019-06-18 17:28:37 -07:00
Dana Robinson
c6e21cede7 Merge pull request #1748 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:links_iterate_zero_bug to develop
* commit '0a75da70a61d41a0bf20a5c617f3eb678ed0b103':
  Yanked qsort assert
  Switched to HGOTO_DONE() in the links code.
  Updated the HDqsort() macro to ensure we don't pass NULL buffers to qsort(3) in the future.
  Fixed a bug in the links code where iterating over an empty group would pass a NULL pointer to qsort(3), which is undefined behavior.
2019-06-18 17:36:42 -05:00
Allen Byrne
b3b6dcb44a Correct CMake issues 2019-06-18 17:10:46 -05:00
Allen Byrne
8973ba46c6 Merge pull request #1745 in HDFFV/hdf5 from ~BYRN/hdf5_merge_adb:develop to develop
* commit '6cd728796dee1cbc5b1fdf28900b23b7a6870b67':
  HDFFV-10805 Add option to only build shared targets
2019-06-18 16:32:06 -05:00
Dana Robinson
0a75da70a6 Yanked qsort assert 2019-06-18 12:52:42 -07:00
Dana Robinson
b8c24388ec Switched to HGOTO_DONE() in the links code. 2019-06-18 12:27:51 -07:00
Dana Robinson
ea966597d5 Updated the HDqsort() macro to ensure we don't pass NULL buffers to
qsort(3) in the future.
2019-06-18 12:23:06 -07:00
Dana Robinson
d767e6a067 Fixed a bug in the links code where iterating over an empty group would
pass a NULL pointer to qsort(3), which is undefined behavior.

Fixes HDFFV-10829
2019-06-18 11:42:53 -07:00
Allen Byrne
6cd728796d Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '10535e0376d88e218cab782322bfc06f35835f31':
  Reset the other convenience pointer because why no
  Fixed a memory bug where a pointer is used after it's been freed.
2019-06-18 13:42:03 -05:00
Dana Robinson
10535e0376 Merge pull request #1747 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:vds_memory_bug to develop
* commit '8d67b440f7d94f1b191ce154a41685bcaa90fd12':
  Reset the other convenience pointer because why no
  Fixed a memory bug where a pointer is used after it's been freed.
2019-06-18 12:52:27 -05:00
Dana Robinson
8d67b440f7 Reset the other convenience pointer because why no 2019-06-18 10:24:58 -07:00
Allen Byrne
d118a47a92 Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)
* commit '712a2a13d8add828d053135a172abb2e819d59ad':
  Fixed a warning in H5CX.c concerning incorrect use of freeing VOL connector info.
  Add H5S_SEL_ITER_SHARE_WITH_DATASPACE selection iterator creation flag, to share dataspace's selection with iterator (and with caution about not modifying or closing the dataspace while the iterator is open).
  Fix misc. typos, etc. from code review
  New hyperslab selection routines and new public selection iterator routines.
2019-06-18 12:12:24 -05:00