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Author SHA1 Message Date
Allen Byrne
a0485058d6 [svn-r29232] add debug symbols library to install 2016-02-29 15:56:08 -05:00
Allen Byrne
83b5bed5d4 [svn-r29231] Check if szip is enabled before attempting to run example with szip. 2016-02-29 15:47:35 -05:00
Allen Byrne
6e9e1d67f5 [svn-r29229] Turn java OFF by default. 2016-02-29 12:25:27 -05:00
Allen Byrne
198ceb5fcc [svn-r29227] HDFFV-9552: merge in java code. 
new files added.
 2016-02-28 21:45:23 -05:00
Allen Byrne
63249be0e1 [svn-r29226] HDFFV-9552: merge in java code. 2016-02-28 21:43:00 -05:00
Allen Byrne
a1617b7cdb [svn-r29222] HDFFV-9570: Fix segfault when optional args are last option on command line. 
Tested: java_merge DT
 2016-02-28 12:58:37 -05:00
Vailin Choi
337e62226c [svn-r29202] Fix for unknown message HDFFV-9697. 
Tested on jam, ostrich, platypus, kite, quail, osx1010test, emu, mayll, moohan.
 2016-02-24 16:30:35 -05:00
Allen Byrne
016ebfcdf2 [svn-r29198] Remove if condition for test mask situation 2016-02-24 09:55:14 -05:00
Allen Byrne
f74042d4e8 [svn-r29190] Add checking for *.err file before trying to read 2016-02-23 15:50:02 -05:00
Allen Byrne
f7689087de [svn-r29186] HDFFV-9654: add VDS options to h5dump 
includes new data files
 2016-02-23 15:23:46 -05:00
Dana Robinson
807187e2f2 [svn-r29183] Fixed missing reopen test call in tfile from HDFFV-8740 fix. 
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           autotools serial w/ fortran and C++
 2016-02-22 16:45:28 -05:00
Dana Robinson
19a8216bd5 [svn-r29182] Re-commit of HDFFV-8740 fix, which adds the ability to configure 
external dataset storage path behavior.

This check-in fixes a bug in the original check-in where the
external path stored in the file struct was not copied on reopen
causing subsequent dataset operations to fail.

Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           autotools serial w/ fortran and C++
           autotools parallel (MPICH 3.1.4) w/ fortran
 2016-02-22 16:40:03 -05:00
Dana Robinson
7511d8b469 [svn-r29179] Revert of 29177 which breaks the autotools build. 
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           autotools serial
 2016-02-22 15:32:01 -05:00
Allen Byrne
910d420409 [svn-r29177] HDFFV-9654: add VDS options to h5dump 2016-02-22 11:57:07 -05:00
Scot Breitenfeld
fe2b65f3e4 [svn-r29172] Fixed double word typo in #ifdef H5_FORTRAN_HAVE_C_SIZEOF 2016-02-19 16:12:32 -05:00
Scot Breitenfeld
553374e665 [svn-r29169] Changed #ifdef to use H5_FORTRAN_C_LONG_DOUBLE_IS_UNIQUE instead of H5_FORTRAN_HAVE_C_LONG_DOUBLE 
Tested: jam (gnu)
 2016-02-19 15:39:11 -05:00
Scot Breitenfeld
5126111606 [svn-r29165] Various rododoc fixes. Effects comments only. 2016-02-19 14:09:34 -05:00
Scot Breitenfeld
0859dd40bb [svn-r29163] changed robodoc specs to look for .F90 files 2016-02-19 13:11:26 -05:00
Scot Breitenfeld
f4430184ab [svn-r29162] added robodoc header information 2016-02-19 13:10:27 -05:00
Mike McGreevy
70c24f201c [svn-r29158] HDFFV-9190: Changed configure.ac to define H5_USE_18_API_DEFAULT when 
'v18' is provided to --with-default-api-version.

Tested: h5committest.new
        and kituo with --with-default-api-version=v18
 2016-02-19 11:21:00 -05:00
Scot Breitenfeld
1b2c30753d [svn-r29155] HDFFV-9652: Add fortran wrappers/test for collective metadata functions 
Tested: h5committest.new
 2016-02-19 09:24:11 -05:00
Mohamad Chaarawi
70ad55b105 [svn-r29150] fix for Jira issue 9670 - HDF5 segfaults on corrupted file. 
Change compare callback in Btree2 class to correctly account for errors.

tested on bb-8.
 2016-02-18 15:50:37 -05:00
Dana Robinson
b3df4e9c8d [svn-r29142] Updated the Intel files in config to use the new NO_SYMBOLS flags 
and modified the failsafe configure flags in ibm-aix to use the
new scheme.
 2016-02-17 13:15:58 -05:00
Dana Robinson
52705fa6f0 [svn-r29139] Updated PGI compiler files to set NO_SYMBOLS_CFLAGS/FCFLAGS and 
moved the -s (strip symbols) option from the production flags to the
no symbols flags.

Tested on: platypus w/ PGI 15.7 (C, C++, Fortran)
 2016-02-17 10:08:33 -05:00
Dana Robinson
d334af98c1 [svn-r29134] Updated config/solaris to use the latest configure option 
and compiler flag scheme.

Tested on: Solaris 11.1 (emu) w/ SunPro 5.12 CC/FC/CXX
           autotools serial
 2016-02-17 04:54:07 -05:00
Dana Robinson
e43c97fdb2 [svn-r29132] Added new single-responsibility functions to h5test.c/h that can 
replace functions like h5_clean_files() that also do things like
reset the error handler and close fapls.

Existing tests have not yet been updated to use these new
functions.

Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           autotools serial
 2016-02-16 23:30:49 -05:00
Dana Robinson
77f2f1c132 [svn-r29131] Updated the GNU g++ compiler config file to use the new debug/ 
production, etc. system.

Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           autotools serial - prod/debug w/ C++
 2016-02-16 21:16:27 -05:00
Dana Robinson
ad0925c214 [svn-r29129] Added NO_SYMBOLS_CFLAGS, etc. to allow stripping symbols when 
--disable-symbols is specified and to ensure that production
mode (where symbol stripping is usually a part of the FLAGS)
doesn't conflict with --enable-symbols. This will allow better
(though still limited) debugging of production/optimized code.

The PGI, XLC, Intel, and Solaris files were not modified and
do not generate the symbol removal flag at this time. They'll
be updated in future check-ins. In the meantime, production
mode on those platforms still usually strips symbols.

This check-in also updates the Cygwin-specific files to use
the new autotools FLAGS and option scheme when uncommon
(non-gnu, etc.) Fortran compilers are used.

Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           autotools serial (prod/debug w/ and w/o symbols)
           symbol presence/absence checked with objdump
 2016-02-16 20:09:04 -05:00
Dana Robinson
6731dca11f [svn-r29127] Moved the --enable-build-mode check in configure.ac to after the 
platform-specific build information so the debug and production
flags are not clobbered.

Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           autotools serial (production & debug)
 2016-02-16 17:42:40 -05:00
Dana Robinson
944e932662 [svn-r29119] Converted HDoff_t to off_t in test/external.c. 
Fixes Windows errors.

Tested on: 64-bit Ubuntu 15.10 w/ gcc 5.2.1
           64-bit Windows 10 w/ VS2015
 2016-02-15 14:22:03 -05:00
Mohamad Chaarawi
8025f6b712 [svn-r29096] fix bug in internal dxpls generated exposed by production and parallel. 2016-02-12 11:54:39 -05:00
Dana Robinson
2018728897 [svn-r29094] Removed the v-1 B-tree package from the list of packages that 
can be configured to generate extra debugging output in both
the autotools and CMake.

This can still be set by defining H5B_DEBUG manually or by
using a custom string in configure.

Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           autotools serial
           CMake serial
 2016-02-12 09:42:15 -05:00
Scot Breitenfeld
39fa385594 [svn-r29092] Fixed uninitialized return value from fortran API. 2016-02-11 16:50:22 -05:00
Dana Robinson
e7c1236543 [svn-r29090] Changed "smart quotes" to ASCII ' and " in r28960 code. 
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           autotools parallel (MPICH 3.1.4)
           CMake serial (CMake 3.3.2)
 2016-02-11 14:37:14 -05:00
Mohamad Chaarawi
d12a994986 [svn-r29088] - Add a test for retrieving the property values for the new coll md functions. 
- ifdef some code that don't need to be built in parallel
- more minor enhancements

tested on bb-8 with parallel and serial
 2016-02-11 11:03:44 -05:00
Mohamad Chaarawi
fba3bbc7bf [svn-r29086] missed renaming the GET collective metadata read requirement. 2016-02-11 08:12:17 -05:00
Dana Robinson
5655e5a91a [svn-r29084] Revert of: 
r29069 and 72 (gheap cleanup)

r29041 and 43 (HDFFV-8740 external storage)

These cause problems in the daily tests. They will be
re-introduced when their respective problems have been
addressed.

Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           autotools serial (check-vfd) w/ Fortran and C++
           autotools parallel w/ Fortran
           CMake serial
 2016-02-10 23:40:10 -05:00
Mohamad Chaarawi
63c90e5c67 [svn-r29081] - merge in the phdf5_metadata_opt/ branch with the collective metadata optimizations. 
- rename H5AC_dxpl_id to H5AC_ind_read_dxpl_id and update all usage in the library

tested on bb-8 with parallel and serial.
 2016-02-10 15:48:34 -05:00
Mohamad Chaarawi
557a3972ac [svn-r29080] merge from trunk. 2016-02-10 13:36:23 -05:00
Mohamad Chaarawi
25f271d84b [svn-r29079] rename the coll read requirement function. 2016-02-10 13:19:12 -05:00
Quincey Koziol
c8a6c6030a [svn-r29077] Description: 
Normalize against the trunk, in preparation for final merge.

Tested on:
    MacOSX/64 10.11.3 (amazon) w/serial & parallel
    (h5committest not required on this branch)
 2016-02-10 12:55:55 -05:00
Quincey Koziol
4da0790886 [svn-r29076] Description: 
Normalize against the phdf5_metadata_opt branch, in preparation for
merging it to trunk.

Tested on:
    MacOSX/64 10.11.3 (amazon) w/serial, parallel, and production builds
    h5committest forthcoming
 2016-02-10 12:54:15 -05:00
Scot Breitenfeld
745513e2b0 [svn-r29074] fixed integer type for H5Sget_simple_extent_ndims_f argument 2016-02-09 11:51:28 -05:00
Dana Robinson
be36958b77 [svn-r29072] test/gheap stack size cleanup. 
Tested on: 64-bit Ubuntu 15.10 (Linux 4.2.0 x86_64) gcc 5.2.1
           serial autotools (also w/ Valgrind)
 2016-02-08 23:18:53 -05:00
Dana Robinson
1a4e315a5d [svn-r29069] test/gheap cleanup prior to stack size fixes. 
Tested on: Linux VM (minor changes)
 2016-02-08 20:38:44 -05:00
Mohamad Chaarawi
f1283d59b0 [svn-r29066] - fixing some of the internal usage of dxpls. 
- merge from trunk.
 2016-02-08 15:12:07 -05:00
Scot Breitenfeld
c418bc964d [svn-r29062] HDFFV-9564: Implement VDS Fortran wrappers. 
Tested: h5committest.new
 2016-02-08 09:01:29 -05:00
Mohamad Chaarawi
0461830ee3 [svn-r29059] merge from trunk. 2016-02-07 11:38:55 -05:00
Mohamad Chaarawi
48bebcc39e [svn-r29057] added dxpl type checking when debug mode is enabled (H5_DEBUG_BUILD) 
tested on bb-8 with Serial and Parallel, debug and production builds.
 2016-02-07 10:37:33 -05:00
Dana Robinson
6694764120 [svn-r29050] Setting --enable-build-mode=debug now creates an H5_DEBUG_BUILD definition. 
Tested on: linux VM (minor change)
 2016-02-05 16:27:12 -05:00