Commit Graph

13 Commits

Author SHA1 Message Date
Quincey Koziol
650e88756c [svn-r452] Changed tests to use the new dataspace API calls. Still need to add tests for
point selections and strides.
1998-07-06 16:01:59 -05:00
Robb Matzke
1e8ebeecfc [svn-r410] Changes since 19980604
----------------------

./src/H5A.c
	Named data types can have attributes.

	Fixed bugs where the API functions didn't check the return
	values of their internal counterparts and thus the automatic
	error reporting didn't work.

	Fixed some places where the error stack wasn't cleared after a
	function returned failure.

	Data types returned by H5Aget_type() are always read-only.

	If the `attr_num' argument of H5Aiterate() is null then it
	acts like H5Giterate() instead of failing -- it begins
	processing attributes with the first one.

./src/H5D.c
	We check for allocation overruns when scalar datasets are
	stored in external files.

./src/H5O.c
	H5O_modify() will fail if the message is >=16kB.

./src/H5Oattr.c
	Split some long lines

./src/H5T.c
./src/H5Tprivate.h
	Added H5T_entof() to support attributes on named types.

./src/h5ls.c
	Prints the names of attributes and their sizes.

./test/cmpd_dset.c
./test/dsets.c
./test/dtypes.c
./test/extend.c
./test/external.c
./test/gheap.c
./test/istore.c
./test/links.c
./test/shtype.c
	If the environment variable HDF5_NOCLEANUP is defined then the
	temporary files are not removed.  The testhdf5 program still
	has the bug that it removes *.h5, clobbering test files from
	other programs... oh well.

./test/dtypes.c
	Added attribute tests.
1998-06-05 16:03:49 -05:00
Albert Cheng
1327f0c65e [svn-r402] Added cleanup function that removes all temporary test files when
the tests pass.  Should add a "noclean" option that allows the
temporary to stay around even when the tests pass.
1998-05-28 18:02:29 -05:00
Robb Matzke
d392756a1b [svn-r400] Changes since 19980513
----------------------

./html/Datasets.html
	Fixed a couple of typos.

./src/H5.c
	Added the `Z' modifier to HDfprintf() for `size_t' sizes.  Use
	it like this:
	   HDfprintf(stderr,"size is %Zd\n", (size_t)x);

./src/H5AC.c
./src/H5F.c
./src/H5Fprivate.h
	The maximum number of meta data objects that can be cached can
	be set from the application (but the library might not honor
	it every time; it's a hint).

./src/H5D.c
	Changed a warning message so it's not so alarming.

./src/H5Fistore.c
	Chunks can be cached.

./src/H5O.c
./src/H5Oprivate.h
	Added H5O_copy() and H5O_free() to copy and free messages.

./src/H5P.c
./src/H5Ppublic.h
	Added H5Pset_cache() and H5Pget_cache() and changed lots of
	"template" to "property list".

./src/H5Z.c
./src/H5Zpublic.h
	Miscellaneous little things to clean up.  Mostly just removed
	H5Z_MAXVAL and added H5Z_USERDEF_MIN and H5Z_USERDEF_MAX.

./MANIFEST
./test/Makefile.in
./test/chunk.c		[NEW]
	Added a performance test for chunk caching.  It looks at the
	amount of I/O instead of timing because timing is partly
	dependent on the chunk size and I wanted a measurement that
	was a function of only the cache size.  Run `chunk' with no
	arguments and then say `gnuplot x-gnuplot' to see the plots
	(press return between plots). Postscript files are created for
	each plot.

./test/big.c
./test/cmpd_dset.c
./test/extend.c
./test/external.c
./test/gheap.c
	Added H5F_ACC_DEBUG so we can see cache performance
	statistics.
1998-05-22 10:05:53 -05:00
Robb Matzke
65bb86375c [svn-r383] ./src/H5A.c
./src/H5F.c
./src/H5G.c
./src/H5O.c
./src/H5Osdspace.c
./src/H5T.c
./src/H5Tconv.c
./src/H5Z.c
./test/big.c
./test/cmpd_dset.c
./test/dsets.c
./test/extend.c
./test/istore.c
	Now that I have a home-grown version of Purify I fixed all the
	leaks in all the test files.
1998-05-01 00:16:50 -05:00
Robb Matzke
c01750fa74 [svn-r338] Changes since 19980407
----------------------

./src/H5B.c
./src/H5D.c
./src/H5Dprivate.h
./src/H5Dpublic.h
./src/H5F.c
./src/H5Farray.c
./src/H5Fcore.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fprivate.h
./src/H5Fpublic.h
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5G.c
./src/H5Gent.c
./src/H5Gnode.c
./src/H5HG.c
./src/H5HL.c
./src/H5MF.c
./src/H5MFprivate.h
./src/H5O.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Olayout.c
./src/H5Oname.c
./src/H5Oprivate.h
./src/H5Osdspace.c
./src/H5Oshared.c
./src/H5Ostab.c
./src/H5P.c
./src/H5Ppublic.h
./src/H5S.c
./src/H5Sprivate.h
./src/H5Spublic.h
./src/H5Ssimp.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5V.c
./src/H5Vprivate.h
./src/H5private.h
./src/H5public.h
./src/h5ls.c
./test/cmpd_dset.c
./test/dsets.c
./test/extend.c
./test/external.c
./test/hyperslab.c
./test/iopipe.c
./test/istore.c
./test/shtype.c
./test/tfile.c
./test/th5s.c
	Anything having to do with the size of a dataset now uses the
	types `hsize_t' and `hssize_t' which must be the same size and
	at least as large as `size_t'.  This isn't fully tested yet,
	so hsize_t and hssize_t are defined as size_t and ssize_t in
	H5public.h.  Setting them to larger values will trip up gcc
	versions less than 2.8.1 on x86 platforms.

	Documented unused function formals with `__unused__' before
	the formal name.  This also has the effect of supressing
	warning messages for gcc since it's defined to be
	`__attribute__((unused))' in the H5private.h file.

./src/debug.c
./src/h5ls.c
	If the file name contains a `%' then the file is opened as a
	file family with H5P_DEFAULT for the file member access
	property list.

./src/h5ls.c
	The group name is optional, defaulting to `/'.

./src/hdf5.h
	Added some missing public header files.
1998-04-08 16:43:02 -05:00
Robb Matzke
7bdea74ca9 [svn-r303] Changes since 19980228
----------------------

./html/Dataspaces.html
./html/Errors.html
./html/Files.html
./html/H5.api.html
./html/review1.html
./src/H5private.h
./src/H5public.h
./test/dsets.c
./test/dtypes.c
	Removed all the types like `int32' and `intn' into private
	headers since they violate the naming scheme and pollute
	application name space.  Besides, our test files only use them
	in a handful of places and it's probably useless to export
	them to the app.  The app is always written in terms of
	standard numeric types or its own numeric types and probably
	never in terms of HDF5 numeric types.  If it were, then the
	user would have to copy from their type to hdf5 type for
	almost every hdf5 API function call!  Same goes for return
	values.  I also removed SUCCEED/FAIL from the API since apps
	should be checking against zero anyway.

	       if (FAIL==(space=H5Screate_simple(...))) /*wrong*/
	       if ((space=H5Fcreate_simple(...)<0))     /*right*/


./src/H5.c
	Changed arguments of H5version() from `uintn' to `unsigned'.

./src/H5Tpublic.h
./src/H5T.c
	Changed return type of H5Tget_nmembers() from `intn' to `int'


./src/H5A.c
./src/H5Aprivate.h
./src/H5Apublic.h
	Changed `H5Asearch_func_t' to `H5A_search_func_t' and moved
	its definition from the public to the private header file.


./html/H5.format.html
	Documented changes made to the external file list (H5O_EFL)
	message.

./src/H5D.c
./src/H5Dprivate.h
./src/H5E.c
./src/H5Epublic.h
./src/H5O.c
./src/H5Oefl.c
./src/H5Oprivate.h
./src/H5P.c
./src/H5Ppublic.h
	Added partial support for external raw data files.  HDF5 can
	now describe external raw data files by listing the file
	names, offsets, and size for a dataset. However, we will
	restrict a dataset to be stored "contiguously" when the
	external file list is viewed as a single address space. The
	current implementation is unable to read/write to external
	files--that will come later this week as will documentation.
	For now, take a look at ./test/external.c, particularly the
	calls to H5Pset_external().

./test/Makefile.in
./test/external.c		[NEW]
./MANIFEST
	Added tests for external storage.  Note: the read test is
	supposed to fail at this point since reading external datasets
	is not implemented yet.  There is no write test.

./src/H5S.c
./src/H5Sprivate.h
./src/H5Ssimp.c
	Added H5S_get_npoints_max() to return the maximum possible
	number of data points in a data space.

	Added an extra argument to H5S_get_dims() which returns the
	maximum dims.

./src/H5F.c
./src/H5Fprivate.h
./src/H5Fpublic.h
./src/H5M.c			[DEPRICATED]
./src/H5Mpublic.h		[DEPRICATED]
	Changed `template' to `property list' in lots of places.

./src/H5Osdspace.c
	Removed an extra `\n' from a print statement.

./src/H5S_public.h
	Changed H5S_UNLIMITED to the maximum size_t value.

./test/extend.c
	"Extendable" is spelled "extendible".

./src/H5Farray.c
./src/H5V.c
./src/H5Vprivate.h
./test/hyperslab.c
	Strides are now type ssize_t instead of int.  These have
	nothing to do with the sample granularity arguments for
	hyperslabs, which are also called "strides" in the code.

./test/tstab.c
	Changed assumptions about default address and length sizes.
1998-03-04 11:20:23 -05:00
Quincey Koziol
c543632ba5 [svn-r297] Switched templates to "property lists" and changed API prefix from H5C to H5P 1998-02-25 14:13:49 -05:00
Quincey Koziol
faa3f5739e [svn-r296] Switched prefix for dataspaces from H5P to H5S 1998-02-25 13:48:33 -05:00
Robb Matzke
9bfbfbc9a0 [svn-r291] Changes since 19980206
----------------------

./configure.in
./src/H5Fprivate.h
./src/H5Fsec2.c
	We now detect and use lseek64() on systems that have it (e.g.,
	Irix64) and are able to generate >2GB files on Irix XFS file
	systems (and anything else that supports large files).  This
	change also removed some warning messages from the Irix `-64'
	compiler.

	> $ ls -l istore.h5
	> -rw-r--r--    1 matzke   meshtv   8605436856 Feb 17 14:03 istore.h5

./configure.in
./src/H5Fprivate.h
./src/H5Fstdio.h
	We now detect and use fseek64() on systems that have it (e.g.,
	Irix64) and are able to generate >2GB files on Irix XFS file
	systems (and anything else that supports large files).  This
	change also removed some warning messages from the Iris `-64'
	compiler.

./src/H5E.c
./src/H5Epublic.h
	Added the H5E_OVERFLOW error to signal file address overflow.

./src/H5Fpublic.h
./examples/h5_chunk_read.c
./examples/h5_compound.c
./examples/h5_extend_write.c
./examples/h5_group.c
./examples/h5_read.c
./examples/h5_write.c
./html/Datasets.html
./html/Files.html
./html/H5.api.html
./html/H5.intro.html
./html/H5.sample_code.html
./html/ph5example.c
./html/review1.html
./test/cmpd_dset.c
./test/dsets.c
./test/extend.c
./test/tfile.c
./test/th5p.c
./test/theap.c
./test/tohdr.c
./test/tstab.c
./testpar/phdf5.c
	Renamed file access constants to follow the naming scheme.
	Also changed the base names a little to be more accurate as to
	what they do.  The old names H5ACC_WRITE and H5ACC_OVERWRITE
	will temporarily work.

	     H5ACC_DEFAULT     --> H5F_ACC_RDONLY for H5Fopen()
	     H5ACC_DEFAULT     --> H5F_ACC_EXCL   for H5Fcreate()
	     H5ACC_WRITE       --> H5F_ACC_RDWR
	     H5ACC_OVERWRITE   --> H5F_ACC_TRUNC

	Albert or Kim: The H5ACC_INDEPENDENT and H5ACC_COLLECTIVE
	macros in H5Fpublic.h should be an enum typedef and have names
	more like H5F_MPIO_INDEPENDENT and H5F_MPIO_COLLECTIVE.  Also
	change the access_mode argument of H5Cset_mpio().

	H5Fcreate() and H5Fopen() are more strict now about which
	flags are acceptable for the operation.

./src/H5Fprivate.h
./src/H5F.c
./src/H5C.c
	Changed the file access template to make it more general.  A
	union contains a struct for each type of low-level driver and
	the default template is initialized at run-time.

./src/H5Fpublic.h
./src/H5F.c
	Added H5Fget_access_template() and cleaned up
	H5Fget_create_template().

./src/H5C.c
	The H5Cset_mpi() no longer trashes the file access template
	when an error is detected.  We check for errors and *then*
	update the file access template.

	Added H5C_close() so Albert and Kim have a place to release
	the MPI communicator and info from the file access property
	list.

	Kim or Albert: I notice in H5Cset_mpi() you copy the MPI
	communicator.  Do you need to do something similar in
	H5C_copy()?

./src/H5F.c
	Added more error checking for the file creation and access
	property lists because it used to be possible to make the
	library dump core by swapping the creation and access property
	list ID numbers of H5Fcreate().

./test/istore.c
./test/tfile.c
./test/th5p.c
./test/theap.c
./test/tohdr.c
./test/tstab.c
./testpar/testphdf5.c
	One must pass H5C_DEFAULT as the file creation or access
	property list in order to get the default property list.  It
	is no longer possible to pass zero or any other arbitrary bad
	object ID.

./src/H5Fcore.c
./src/H5Ffamly.c
./src/H5Flow.c
./src/H5Fmpio.c
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5MF.c
	The file access property list is passed to all H5F_low_...()
	functions and to the drivers.

./src/H5Fcore.c
	The block size can be set at run time on a per-file basis
	instead of at compile time across all files. The "5000 items in
	a group test" now takes 1.6 seconds.

./src/H5private.h
	Removed inclusion of mpi.h and mpio.h since they're included
	from H5public.h.

./src/H5Cpublic.h
./src/H5C.c
	Added H5Cset_stdio(), H5Cset_sec2(), H5Cset_core(),
	H5Cset_split(), and H5Cset_family() in addition to the
	H5Cset_mpio() that Kim and Albert already wrote.  We still
	need the H5Cget_driver() and an H5Cget...() counterpart for
	each of those functions.  The split and family drivers still
	need a little work but I'm checking this in anyway.
1998-02-19 13:26:49 -05:00
Albert Cheng
7e8e3eec42 [svn-r230] Changes were actually made by Robb. I am commiting them for him
while he is visiting LLNL.  I changed the default creation template
offset and length to 4.  Will fix the problem later.

Changes since 19980205
----------------------

./src/H5H.c
./src/H5Hprivate.h
./src/H5O.c
./src/H5Ocont.c
./src/H5Odtype.c
./src/H5Oefl.c
./src/H5Olayout.c
./src/H5Oname.c
./src/H5Onull.c
./src/H5Oprivate.h
./src/H5Odspace.c
./src/H5Ostab.c
./src/debug.c
./html/H5.format.html
        Added an extra 4-byte field after the heap magic number for
        alignment on the DEC alpha. Changed object header message
        alignment to 8-bytes.

./src/H5F.c
./src/H5Farray.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fprivate.h
./src/H5Fsec2.c
./src/H5Fstdio.c
./src/H5Gnode.c
./src/H5O.c
./src/H5Odtype.c
./src/H5P.c
./src/H5Pprivate.h
./src/H5T.c
./src/H5Tconv.c
./src/H5Tpkg.h
./src/H5Tpublic.h
./src/H5V.c
./src/H5detect.c
./test/cmpd_dset.c
./test/dsets.c
./test/dtypes.c
./test/extend.c
./test/hyperslab.c
./test/istore.c
./test/th5p.c
./test/theap.c
        Fixed a few irix64 warnings regarding size_t vs. int,
        variables set but not used, printf formats

./config/irix64
        Added `-woff 1196' to get rid of errors about __vfork() being
        implicitly defined in a system header file.

./src/H5B.c
        Fixed a stack alignment problem.
1998-02-09 14:37:40 -05:00
Robb Matzke
8831ff175c [svn-r210] Changes since 19980130
----------------------

./MANIFEST
./html/study.html		[NEW]
./html/study_1000x1000.gif	[NEW]
./html/study_250x250.gif	[NEW]
./html/study_499x499.gif	[NEW]
./html/study_5000x1000.gif	[NEW]
./html/study_500x500.gif	[NEW]
./html/study_p1.gif		[NEW]
./html/study_p1.obj		[NEW]
	The conclusions from a study of the HDF5 chunking
	layout. Shows overhead and disk seeking.
1998-01-30 22:47:38 -05:00
Robb Matzke
374e5ae39b [svn-r209] Changes since 19980130
----------------------

./INSTALL
	Added instructions for which C flags to set for debugging.

./src/H5C.c
./src/H5Cpublic.h
	H5Cset_chunk() takes const pointer.

./src/H5D.c
./src/H5Dprivate.h
./src/H5Dpublic.h
	Added H5Dextend() to extend the dimensions of a dataset.

./src/H5Osdspace.c
./src/H5P.c
./src/H5Pprivate.h
./src/H5Ppublic.h
./test/cmpd_dset.c
./test/dsets.c
./test/th5p.c
	Added the optional `maxdims' argument to H5Pcreate_simple()
	and defined constant H5P_UNLIMITED which can appear in the
	maxdims.  Added `const' to arguments.

	Implemented H5Pcopy()

	Removed the unused file argument from H5P_modify.

	Added H5P_extend().

	Removed the `flags' field from simple data types and we
	determine if the `max' or `perm' arrays are valid by looking
	at the pointer.  Cleaned up the H5O_sdspace_debug output.

./src/H5T.c
	Fixed a printf format.

./MANIFEST
./test/Makefile.in
./test/extend.c			[NEW]
	Added a test for multi-dimensional unlimited dimensions.
1998-01-30 18:32:28 -05:00